Query 006661
Match_columns 636
No_of_seqs 393 out of 2212
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.4E-24 4.8E-29 200.8 16.5 123 28-152 7-133 (134)
2 1irz_A ARR10-B; helix-turn-hel 99.9 4.9E-23 1.7E-27 168.2 7.7 62 217-278 2-63 (64)
3 3gl9_A Response regulator; bet 99.9 8.4E-21 2.9E-25 167.0 16.8 116 34-151 3-121 (122)
4 3f6p_A Transcriptional regulat 99.9 7.7E-21 2.6E-25 166.4 16.3 117 34-152 3-119 (120)
5 3t6k_A Response regulator rece 99.9 2.2E-20 7.5E-25 167.3 17.9 119 33-153 4-125 (136)
6 3r0j_A Possible two component 99.9 8.6E-20 2.9E-24 180.5 23.6 120 32-153 22-142 (250)
7 2lpm_A Two-component response 99.8 6.6E-23 2.2E-27 187.4 -0.1 114 31-150 6-120 (123)
8 3mm4_A Histidine kinase homolo 99.8 1.9E-20 6.4E-25 181.2 16.6 143 9-153 17-197 (206)
9 2r25_B Osmosensing histidine p 99.8 3.5E-20 1.2E-24 165.3 16.3 119 33-151 2-126 (133)
10 3h1g_A Chemotaxis protein CHEY 99.8 1.7E-19 5.9E-24 159.4 17.1 118 33-151 5-126 (129)
11 3m6m_D Sensory/regulatory prot 99.8 1.4E-19 4.6E-24 163.8 16.6 120 31-152 12-136 (143)
12 1kgs_A DRRD, DNA binding respo 99.8 5.9E-19 2E-23 169.9 21.2 119 33-153 2-121 (225)
13 1a04_A Nitrate/nitrite respons 99.8 2E-19 6.9E-24 172.7 17.7 165 32-198 4-179 (215)
14 2pl1_A Transcriptional regulat 99.8 5.2E-19 1.8E-23 152.9 18.5 117 34-152 1-118 (121)
15 2a9o_A Response regulator; ess 99.8 3.3E-19 1.1E-23 153.6 17.1 117 34-152 2-118 (120)
16 1zgz_A Torcad operon transcrip 99.8 5.1E-19 1.7E-23 153.6 18.4 117 34-152 3-119 (122)
17 3gt7_A Sensor protein; structu 99.8 3.3E-19 1.1E-23 162.9 17.6 121 32-154 6-129 (154)
18 3crn_A Response regulator rece 99.8 4.4E-19 1.5E-23 157.4 17.7 119 33-153 3-122 (132)
19 2qzj_A Two-component response 99.8 3.3E-19 1.1E-23 159.6 17.0 120 32-153 3-122 (136)
20 3q9s_A DNA-binding response re 99.8 9E-20 3.1E-24 181.6 14.5 154 33-188 37-197 (249)
21 1xhf_A DYE resistance, aerobic 99.8 5.8E-19 2E-23 153.4 17.7 118 33-152 3-120 (123)
22 3rqi_A Response regulator prot 99.8 6.3E-20 2.1E-24 173.4 12.4 120 32-153 6-126 (184)
23 1dbw_A Transcriptional regulat 99.8 5.6E-19 1.9E-23 154.8 17.4 118 33-152 3-121 (126)
24 1i3c_A Response regulator RCP1 99.8 6.3E-19 2.2E-23 159.8 18.2 123 31-153 6-138 (149)
25 1zh2_A KDP operon transcriptio 99.8 5E-19 1.7E-23 152.7 16.4 118 34-153 2-119 (121)
26 1srr_A SPO0F, sporulation resp 99.8 4.6E-19 1.6E-23 154.6 16.0 116 34-151 4-120 (124)
27 3lua_A Response regulator rece 99.8 1.1E-19 3.6E-24 162.3 12.2 121 32-154 3-129 (140)
28 3hv2_A Response regulator/HD d 99.8 7.1E-19 2.4E-23 159.8 17.9 123 30-154 11-135 (153)
29 3jte_A Response regulator rece 99.8 1E-18 3.5E-23 156.0 18.5 122 33-154 3-125 (143)
30 1yio_A Response regulatory pro 99.8 7.7E-20 2.6E-24 174.4 11.6 162 32-196 3-165 (208)
31 1jbe_A Chemotaxis protein CHEY 99.8 9.7E-19 3.3E-23 153.0 17.6 119 32-152 3-125 (128)
32 1tmy_A CHEY protein, TMY; chem 99.8 6.9E-19 2.4E-23 152.3 16.4 116 33-150 2-119 (120)
33 1p6q_A CHEY2; chemotaxis, sign 99.8 4.3E-19 1.5E-23 155.5 14.9 120 31-152 4-127 (129)
34 3grc_A Sensor protein, kinase; 99.8 3E-19 1E-23 159.0 14.1 123 31-155 4-130 (140)
35 3heb_A Response regulator rece 99.8 9.7E-19 3.3E-23 158.4 17.4 121 32-152 3-135 (152)
36 3h5i_A Response regulator/sens 99.8 2.1E-19 7.1E-24 161.0 12.5 122 32-154 4-126 (140)
37 1k68_A Phytochrome response re 99.8 1.3E-18 4.5E-23 153.0 17.2 122 33-154 2-133 (140)
38 3kht_A Response regulator; PSI 99.8 9.5E-19 3.3E-23 156.8 16.6 122 32-155 4-131 (144)
39 3hdv_A Response regulator; PSI 99.8 1.4E-18 4.7E-23 153.9 17.4 122 31-153 5-128 (136)
40 4e7p_A Response regulator; DNA 99.8 8E-19 2.7E-23 159.0 16.2 124 28-153 15-141 (150)
41 2oqr_A Sensory transduction pr 99.8 1.9E-18 6.7E-23 167.1 19.8 118 34-153 5-122 (230)
42 3hdg_A Uncharacterized protein 99.8 8E-19 2.7E-23 155.6 15.6 122 32-155 6-128 (137)
43 3ilh_A Two component response 99.8 1.2E-18 4.1E-23 155.1 16.7 120 31-152 7-139 (146)
44 3eod_A Protein HNR; response r 99.8 7E-19 2.4E-23 154.7 15.0 120 32-153 6-127 (130)
45 3kto_A Response regulator rece 99.8 2.9E-19 1E-23 159.3 12.7 121 32-154 5-128 (136)
46 3cnb_A DNA-binding response re 99.8 1.9E-18 6.6E-23 153.2 17.8 122 30-153 5-131 (143)
47 1mb3_A Cell division response 99.8 6.7E-19 2.3E-23 152.9 14.5 116 34-151 2-120 (124)
48 3nhm_A Response regulator; pro 99.8 8.4E-19 2.9E-23 154.4 15.3 120 31-154 2-124 (133)
49 3b2n_A Uncharacterized protein 99.8 1.1E-18 3.9E-23 154.9 16.2 119 33-153 3-124 (133)
50 1dz3_A Stage 0 sporulation pro 99.8 9.6E-19 3.3E-23 154.1 15.4 119 33-153 2-124 (130)
51 3i42_A Response regulator rece 99.8 4.6E-19 1.6E-23 155.2 13.2 117 33-152 3-122 (127)
52 2zay_A Response regulator rece 99.8 1.2E-18 4.1E-23 156.3 15.5 122 31-154 6-130 (147)
53 3f6c_A Positive transcription 99.8 6E-19 2.1E-23 155.5 13.3 120 33-154 1-122 (134)
54 1k66_A Phytochrome response re 99.8 2.5E-18 8.4E-23 153.2 17.1 123 32-154 5-140 (149)
55 3cfy_A Putative LUXO repressor 99.8 1.4E-18 4.8E-23 155.7 15.3 118 34-153 5-123 (137)
56 3n0r_A Response regulator; sig 99.8 1.7E-19 5.7E-24 185.2 10.6 117 33-153 160-278 (286)
57 1mvo_A PHOP response regulator 99.8 2.2E-18 7.7E-23 152.2 16.4 119 33-153 3-122 (136)
58 3hzh_A Chemotaxis response reg 99.8 1.3E-18 4.6E-23 159.3 15.4 119 32-150 35-155 (157)
59 3cg0_A Response regulator rece 99.8 3.5E-18 1.2E-22 151.3 16.9 121 32-154 8-130 (140)
60 1s8n_A Putative antiterminator 99.8 1.5E-18 5E-23 165.8 15.4 122 30-153 10-132 (205)
61 3luf_A Two-component system re 99.8 2.1E-18 7.2E-23 173.4 17.3 122 32-154 123-247 (259)
62 2gwr_A DNA-binding response re 99.8 7.6E-19 2.6E-23 172.1 13.5 154 33-188 5-168 (238)
63 4dad_A Putative pilus assembly 99.8 1.1E-18 3.8E-23 156.7 13.0 124 28-153 15-142 (146)
64 3snk_A Response regulator CHEY 99.8 1.6E-19 5.6E-24 160.4 7.3 120 31-152 12-133 (135)
65 3lte_A Response regulator; str 99.8 4.2E-18 1.4E-22 149.7 16.2 120 31-153 4-126 (132)
66 2jba_A Phosphate regulon trans 99.8 4.9E-19 1.7E-23 154.3 10.0 118 33-152 2-122 (127)
67 1ys7_A Transcriptional regulat 99.8 1.6E-18 5.6E-23 167.6 14.5 155 33-189 7-175 (233)
68 3n53_A Response regulator rece 99.8 1.1E-18 3.8E-23 155.7 12.1 119 33-154 3-124 (140)
69 3c3m_A Response regulator rece 99.8 3.5E-18 1.2E-22 152.7 15.5 118 33-152 3-123 (138)
70 3eul_A Possible nitrate/nitrit 99.8 6.3E-18 2.1E-22 153.1 17.2 125 28-154 10-137 (152)
71 2ayx_A Sensor kinase protein R 99.8 4.4E-18 1.5E-22 170.1 17.6 121 31-153 127-248 (254)
72 1p2f_A Response regulator; DRR 99.8 1.3E-17 4.3E-22 160.7 19.7 116 33-153 2-118 (220)
73 3kcn_A Adenylate cyclase homol 99.8 7.2E-18 2.4E-22 152.9 16.7 122 31-154 2-125 (151)
74 3cg4_A Response regulator rece 99.8 1.8E-18 6.2E-23 153.9 12.3 121 32-154 6-129 (142)
75 2qxy_A Response regulator; reg 99.8 4.9E-18 1.7E-22 151.4 14.9 119 32-153 3-122 (142)
76 3c3w_A Two component transcrip 99.8 3.9E-19 1.3E-23 173.4 7.8 165 33-199 1-175 (225)
77 3klo_A Transcriptional regulat 99.8 3.9E-19 1.3E-23 172.8 7.6 168 32-201 6-187 (225)
78 2qr3_A Two-component system re 99.8 9.7E-18 3.3E-22 148.5 15.8 119 33-153 3-127 (140)
79 1dcf_A ETR1 protein; beta-alph 99.8 5.1E-18 1.8E-22 150.6 14.0 118 32-152 6-129 (136)
80 2rjn_A Response regulator rece 99.8 1.2E-17 4.3E-22 151.5 16.8 120 32-153 6-127 (154)
81 3dzd_A Transcriptional regulat 99.8 3.3E-18 1.1E-22 181.8 14.1 118 34-153 1-119 (368)
82 3a10_A Response regulator; pho 99.8 5.8E-18 2E-22 145.6 12.9 113 34-150 2-115 (116)
83 2qvg_A Two component response 99.8 1.7E-17 5.8E-22 147.8 16.0 120 32-151 6-134 (143)
84 3cu5_A Two component transcrip 99.8 4.2E-18 1.4E-22 153.3 11.7 119 33-153 2-124 (141)
85 3eq2_A Probable two-component 99.7 5.7E-18 2E-22 178.9 14.0 119 33-153 5-125 (394)
86 1qkk_A DCTD, C4-dicarboxylate 99.7 1.9E-17 6.4E-22 150.4 15.3 120 32-153 2-122 (155)
87 2gkg_A Response regulator homo 99.7 1.5E-17 5.2E-22 143.8 13.8 115 34-151 6-124 (127)
88 3cz5_A Two-component response 99.7 2E-17 6.8E-22 149.9 15.2 120 32-153 4-126 (153)
89 2jk1_A HUPR, hydrogenase trans 99.7 3.6E-17 1.2E-21 145.9 16.4 117 34-153 2-120 (139)
90 3kyj_B CHEY6 protein, putative 99.7 1.1E-17 3.8E-22 150.3 11.7 116 30-146 10-129 (145)
91 1w25_A Stalked-cell differenti 99.7 2.9E-17 1E-21 176.1 16.9 118 34-153 2-122 (459)
92 1ny5_A Transcriptional regulat 99.7 3.6E-17 1.2E-21 174.7 16.6 118 34-153 1-119 (387)
93 2pln_A HP1043, response regula 99.7 7.1E-17 2.4E-21 143.4 15.8 119 28-152 13-133 (137)
94 3t8y_A CHEB, chemotaxis respon 99.7 4.6E-17 1.6E-21 150.7 15.1 118 31-150 23-153 (164)
95 2qv0_A Protein MRKE; structura 99.7 1.2E-16 4.2E-21 142.5 17.0 119 32-154 8-129 (143)
96 2qsj_A DNA-binding response re 99.7 2.6E-17 9E-22 149.0 12.4 120 33-154 3-126 (154)
97 3c97_A Signal transduction his 99.7 2.5E-17 8.6E-22 147.1 12.0 116 33-153 10-131 (140)
98 2rdm_A Response regulator rece 99.7 1.3E-16 4.5E-21 139.8 15.7 119 32-153 4-124 (132)
99 2j48_A Two-component sensor ki 99.7 3.3E-17 1.1E-21 139.1 11.4 113 33-150 1-116 (119)
100 2hqr_A Putative transcriptiona 99.7 2.9E-17 9.9E-22 158.5 12.2 150 34-189 1-159 (223)
101 3bre_A Probable two-component 99.7 5.3E-17 1.8E-21 167.7 14.0 117 33-151 18-138 (358)
102 3eqz_A Response regulator; str 99.7 3.7E-17 1.3E-21 143.5 10.5 117 33-152 3-125 (135)
103 1qo0_D AMIR; binding protein, 99.7 5.9E-17 2E-21 153.6 10.0 115 32-153 11-126 (196)
104 2b4a_A BH3024; flavodoxin-like 99.7 6.6E-17 2.2E-21 143.8 8.8 119 27-151 9-130 (138)
105 3sy8_A ROCR; TIM barrel phosph 99.7 1.1E-16 3.8E-21 170.4 12.2 120 33-153 3-129 (400)
106 1dc7_A NTRC, nitrogen regulati 99.7 4.1E-18 1.4E-22 147.2 -1.8 119 33-153 3-122 (124)
107 1a2o_A CHEB methylesterase; ba 99.6 3.4E-15 1.2E-19 157.8 15.9 118 33-152 3-133 (349)
108 3luf_A Two-component system re 99.6 1.5E-15 5.3E-20 152.5 9.2 104 33-140 4-108 (259)
109 2vyc_A Biodegradative arginine 99.5 8.7E-15 3E-19 169.0 8.9 119 34-153 1-134 (755)
110 1w25_A Stalked-cell differenti 98.9 1.8E-08 6.1E-13 107.9 17.8 118 32-153 151-271 (459)
111 3cwo_X Beta/alpha-barrel prote 98.9 6.8E-10 2.3E-14 106.9 6.1 92 58-151 6-100 (237)
112 2ayx_A Sensor kinase protein R 97.1 0.00081 2.8E-08 66.7 7.2 98 30-151 8-105 (254)
113 3n75_A LDC, lysine decarboxyla 96.4 0.0032 1.1E-07 72.6 6.9 104 45-152 18-123 (715)
114 3q7r_A Transcriptional regulat 95.8 0.038 1.3E-06 49.1 8.6 101 35-152 14-118 (121)
115 3cwo_X Beta/alpha-barrel prote 95.6 0.064 2.2E-06 50.9 10.3 81 65-146 131-220 (237)
116 2yxb_A Coenzyme B12-dependent 94.6 0.62 2.1E-05 43.7 14.0 119 32-153 17-146 (161)
117 3q58_A N-acetylmannosamine-6-p 89.8 1.5 5.1E-05 43.5 10.1 99 33-135 101-210 (229)
118 3fkq_A NTRC-like two-domain pr 89.2 3.3 0.00011 43.3 12.7 105 32-151 20-127 (373)
119 1wv2_A Thiazole moeity, thiazo 88.9 2.2 7.5E-05 43.6 10.6 114 33-151 105-237 (265)
120 3igs_A N-acetylmannosamine-6-p 87.2 2.7 9.2E-05 41.7 10.0 99 33-135 101-210 (232)
121 1ccw_A Protein (glutamate muta 85.8 19 0.00063 32.5 14.1 107 40-148 14-132 (137)
122 2i2x_B MTAC, methyltransferase 81.8 14 0.00049 36.8 12.6 112 31-150 121-242 (258)
123 1r8j_A KAIA; circadian clock p 80.2 20 0.00069 36.8 12.8 125 26-153 2-130 (289)
124 1y80_A Predicted cobalamin bin 79.0 8.4 0.00029 36.9 9.4 98 32-134 87-196 (210)
125 2htm_A Thiazole biosynthesis p 78.7 6.3 0.00022 40.4 8.7 107 40-151 108-228 (268)
126 3ezx_A MMCP 1, monomethylamine 77.7 7.7 0.00026 37.9 8.8 100 31-135 90-203 (215)
127 2l69_A Rossmann 2X3 fold prote 76.1 28 0.00095 30.5 10.7 42 35-76 4-45 (134)
128 1geq_A Tryptophan synthase alp 74.8 7 0.00024 38.1 7.7 54 94-147 68-127 (248)
129 3qja_A IGPS, indole-3-glycerol 74.4 33 0.0011 34.7 12.8 89 43-135 148-242 (272)
130 2ekc_A AQ_1548, tryptophan syn 74.2 8.2 0.00028 38.7 8.2 83 67-149 31-143 (262)
131 2xij_A Methylmalonyl-COA mutas 74.1 27 0.00091 40.7 13.3 119 32-153 603-732 (762)
132 2yum_A ZZZ3 protein, zinc fing 74.1 6.7 0.00023 31.9 6.2 48 223-272 9-59 (75)
133 1xrs_B D-lysine 5,6-aminomutas 73.5 20 0.00068 36.5 10.8 115 32-151 119-257 (262)
134 1xi3_A Thiamine phosphate pyro 73.5 22 0.00074 33.4 10.6 69 62-134 114-189 (215)
135 2hzd_A Transcriptional enhance 72.4 4.4 0.00015 34.5 4.7 56 222-277 6-77 (82)
136 3kp1_A D-ornithine aminomutase 72.2 14 0.00047 42.4 10.0 116 33-153 602-736 (763)
137 4fo4_A Inosine 5'-monophosphat 72.1 31 0.001 36.6 12.3 100 32-135 119-240 (366)
138 1qop_A Tryptophan synthase alp 71.5 8.8 0.0003 38.5 7.7 71 79-149 44-143 (268)
139 2q5c_A NTRC family transcripti 71.1 43 0.0015 32.0 12.2 57 30-86 1-58 (196)
140 1req_A Methylmalonyl-COA mutas 70.9 27 0.00091 40.5 12.2 118 32-152 595-723 (727)
141 3ffs_A Inosine-5-monophosphate 69.1 26 0.00089 37.6 11.0 100 33-135 156-275 (400)
142 3vnd_A TSA, tryptophan synthas 68.5 8.9 0.00031 38.9 7.0 55 95-149 83-144 (267)
143 1yad_A Regulatory protein TENI 67.2 20 0.00068 34.3 8.9 69 62-134 116-191 (221)
144 3f4w_A Putative hexulose 6 pho 66.6 70 0.0024 30.0 12.5 99 33-134 77-186 (211)
145 2lci_A Protein OR36; structura 65.3 16 0.00054 32.0 6.8 39 37-75 81-119 (134)
146 3o63_A Probable thiamine-phosp 64.8 42 0.0014 33.4 10.9 69 62-134 141-218 (243)
147 1xm3_A Thiazole biosynthesis p 62.3 22 0.00076 35.6 8.4 88 44-135 114-207 (264)
148 3khj_A Inosine-5-monophosphate 62.3 37 0.0013 35.8 10.5 100 33-135 117-236 (361)
149 1ujp_A Tryptophan synthase alp 58.4 14 0.00047 37.5 6.1 84 65-149 28-140 (271)
150 1ka9_F Imidazole glycerol phos 56.6 70 0.0024 30.8 10.7 78 67-146 155-242 (252)
151 2cqr_A RSGI RUH-043, DNAJ homo 56.6 42 0.0014 27.6 7.7 44 222-269 18-64 (73)
152 4dzz_A Plasmid partitioning pr 56.1 18 0.00063 33.1 6.2 53 32-87 29-83 (206)
153 2gjl_A Hypothetical protein PA 56.0 96 0.0033 31.5 12.1 80 53-135 114-201 (328)
154 3bo9_A Putative nitroalkan dio 55.7 67 0.0023 33.0 10.9 80 53-135 120-205 (326)
155 2cu7_A KIAA1915 protein; nucle 55.0 29 0.00099 27.9 6.4 46 221-271 8-53 (72)
156 2gek_A Phosphatidylinositol ma 54.7 45 0.0015 33.4 9.3 107 33-151 240-348 (406)
157 3nav_A Tryptophan synthase alp 54.4 14 0.00046 37.7 5.3 55 94-148 84-145 (271)
158 3usb_A Inosine-5'-monophosphat 54.0 97 0.0033 34.0 12.4 101 32-135 267-388 (511)
159 3r2g_A Inosine 5'-monophosphat 53.7 1.7E+02 0.0057 31.0 13.7 97 33-134 112-227 (361)
160 2c6q_A GMP reductase 2; TIM ba 52.8 1E+02 0.0035 32.2 11.8 101 33-137 132-255 (351)
161 1ep3_A Dihydroorotate dehydrog 52.3 39 0.0013 33.8 8.3 88 43-132 150-267 (311)
162 2yus_A SWI/SNF-related matrix- 52.3 16 0.00056 30.4 4.6 43 222-269 18-60 (79)
163 1rd5_A Tryptophan synthase alp 51.8 20 0.00068 35.4 6.0 55 94-149 82-139 (262)
164 3qz6_A HPCH/HPAI aldolase; str 51.1 1E+02 0.0036 30.7 11.2 99 49-149 6-110 (261)
165 1x41_A Transcriptional adaptor 50.9 43 0.0015 26.0 6.6 44 223-270 9-52 (60)
166 3bw2_A 2-nitropropane dioxygen 50.7 1.1E+02 0.0038 31.7 11.8 76 56-134 144-236 (369)
167 3gnn_A Nicotinate-nucleotide p 50.5 1E+02 0.0034 31.9 11.1 66 60-132 213-278 (298)
168 1y0e_A Putative N-acetylmannos 50.2 66 0.0023 30.4 9.2 86 47-135 108-204 (223)
169 1thf_D HISF protein; thermophI 50.0 1.2E+02 0.0041 29.2 11.2 78 66-145 153-240 (253)
170 2w6r_A Imidazole glycerol phos 50.0 67 0.0023 31.3 9.4 68 66-135 158-229 (266)
171 3fro_A GLGA glycogen synthase; 49.5 1.3E+02 0.0043 30.3 11.7 107 32-151 284-394 (439)
172 2cjj_A Radialis; plant develop 49.5 46 0.0016 28.6 7.1 51 224-278 10-63 (93)
173 2tps_A Protein (thiamin phosph 49.2 50 0.0017 31.2 8.2 69 62-134 122-199 (227)
174 1geq_A Tryptophan synthase alp 49.0 24 0.00082 34.2 6.0 84 48-135 124-220 (248)
175 3rht_A (gatase1)-like protein; 48.7 4.2 0.00014 41.2 0.4 50 33-86 4-57 (259)
176 4adt_A Pyridoxine biosynthetic 48.6 1.1E+02 0.0037 31.5 11.0 88 60-150 129-258 (297)
177 4avf_A Inosine-5'-monophosphat 48.6 1.1E+02 0.0038 33.3 11.8 99 33-135 241-361 (490)
178 1jcn_A Inosine monophosphate d 48.5 1.2E+02 0.0042 32.9 12.2 99 33-134 267-386 (514)
179 3l0g_A Nicotinate-nucleotide p 48.4 91 0.0031 32.3 10.3 90 36-132 181-276 (300)
180 1h5y_A HISF; histidine biosynt 48.1 99 0.0034 29.2 10.1 68 65-134 155-226 (253)
181 2w6r_A Imidazole glycerol phos 47.0 59 0.002 31.7 8.5 70 65-136 31-104 (266)
182 3paj_A Nicotinate-nucleotide p 46.9 1.6E+02 0.0054 30.8 12.0 92 35-134 204-302 (320)
183 3duw_A OMT, O-methyltransferas 46.7 92 0.0031 28.9 9.5 72 28-101 78-153 (223)
184 1ka9_F Imidazole glycerol phos 46.5 87 0.003 30.1 9.6 69 65-135 32-104 (252)
185 1h5y_A HISF; histidine biosynt 46.4 88 0.003 29.6 9.5 70 63-134 32-105 (253)
186 2z6i_A Trans-2-enoyl-ACP reduc 45.2 93 0.0032 31.8 10.0 77 55-134 108-190 (332)
187 2v5j_A 2,4-dihydroxyhept-2-ENE 45.1 2.1E+02 0.0071 29.0 12.5 97 49-148 30-132 (287)
188 1eep_A Inosine 5'-monophosphat 44.9 94 0.0032 32.7 10.2 89 43-134 179-284 (404)
189 2bfw_A GLGA glycogen synthase; 44.1 1.7E+02 0.006 26.0 11.5 106 33-151 70-179 (200)
190 3c3y_A Pfomt, O-methyltransfer 43.9 93 0.0032 29.8 9.3 70 30-101 92-167 (237)
191 1tqj_A Ribulose-phosphate 3-ep 43.9 34 0.0012 33.5 6.1 82 65-149 18-108 (230)
192 2vws_A YFAU, 2-keto-3-deoxy su 43.8 2.4E+02 0.0084 27.9 12.6 98 49-148 9-111 (267)
193 3ajx_A 3-hexulose-6-phosphate 43.3 21 0.00073 33.5 4.4 82 65-148 11-98 (207)
194 2v82_A 2-dehydro-3-deoxy-6-pho 43.2 96 0.0033 29.1 9.1 92 51-149 95-196 (212)
195 3tqv_A Nicotinate-nucleotide p 43.1 1.5E+02 0.0053 30.4 11.1 66 60-133 202-268 (287)
196 2f9f_A First mannosyl transfer 42.8 1.6E+02 0.0055 26.2 10.3 107 33-152 50-162 (177)
197 2cqq_A RSGI RUH-037, DNAJ homo 42.3 67 0.0023 26.3 6.7 44 223-271 9-55 (72)
198 2oo3_A Protein involved in cat 41.7 18 0.0006 37.3 3.8 70 32-101 112-182 (283)
199 3beo_A UDP-N-acetylglucosamine 41.7 1.9E+02 0.0066 28.4 11.5 59 80-151 283-341 (375)
200 1sui_A Caffeoyl-COA O-methyltr 41.2 2.4E+02 0.0081 27.2 11.8 71 29-101 100-176 (247)
201 3fwz_A Inner membrane protein 41.0 1.1E+02 0.0039 26.6 8.7 94 32-134 29-124 (140)
202 3bul_A Methionine synthase; tr 41.0 96 0.0033 34.9 9.9 102 32-135 97-211 (579)
203 4fxs_A Inosine-5'-monophosphat 40.5 1.9E+02 0.0064 31.6 12.0 100 33-135 243-363 (496)
204 3tdn_A FLR symmetric alpha-bet 39.5 78 0.0027 30.7 8.0 68 65-134 36-107 (247)
205 2d00_A V-type ATP synthase sub 38.8 1.8E+02 0.006 25.4 9.4 77 33-115 3-81 (109)
206 1qo2_A Molecule: N-((5-phospho 38.6 1.2E+02 0.0041 29.1 9.1 78 65-145 145-239 (241)
207 3tsm_A IGPS, indole-3-glycerol 38.4 1.6E+02 0.0055 29.8 10.3 87 45-135 157-249 (272)
208 3dr5_A Putative O-methyltransf 38.2 43 0.0015 32.1 5.8 69 29-101 77-149 (221)
209 3c48_A Predicted glycosyltrans 38.2 1.5E+02 0.005 30.1 10.2 108 33-151 276-390 (438)
210 3tr6_A O-methyltransferase; ce 37.4 1.1E+02 0.0036 28.4 8.3 73 27-101 83-160 (225)
211 3cbg_A O-methyltransferase; cy 37.2 1.2E+02 0.004 28.9 8.7 72 28-101 92-168 (232)
212 3ovp_A Ribulose-phosphate 3-ep 37.2 94 0.0032 30.4 8.1 54 80-134 135-196 (228)
213 1qv9_A F420-dependent methylen 37.1 47 0.0016 33.7 5.9 60 74-136 61-120 (283)
214 3kts_A Glycerol uptake operon 37.0 42 0.0014 32.6 5.4 62 67-134 117-178 (192)
215 1qpo_A Quinolinate acid phosph 36.8 1.8E+02 0.0063 29.6 10.5 95 36-134 168-268 (284)
216 1thf_D HISF protein; thermophI 36.7 1.6E+02 0.0056 28.2 9.8 69 65-135 31-103 (253)
217 2y88_A Phosphoribosyl isomeras 36.6 1.8E+02 0.0062 27.7 10.0 67 66-134 151-224 (244)
218 3lab_A Putative KDPG (2-keto-3 36.6 1.7E+02 0.0059 28.8 9.9 82 60-144 18-101 (217)
219 3f4w_A Putative hexulose 6 pho 36.6 37 0.0013 31.9 5.0 83 65-149 11-99 (211)
220 1rzu_A Glycogen synthase 1; gl 36.3 2E+02 0.0067 29.8 11.0 107 33-150 320-438 (485)
221 1vzw_A Phosphoribosyl isomeras 36.0 1.4E+02 0.0049 28.5 9.2 68 65-134 147-221 (244)
222 2avd_A Catechol-O-methyltransf 35.9 1.3E+02 0.0043 28.0 8.6 72 28-101 89-165 (229)
223 4had_A Probable oxidoreductase 35.5 2.6E+02 0.0087 28.1 11.4 108 31-151 21-135 (350)
224 2l2q_A PTS system, cellobiose- 35.4 40 0.0014 29.1 4.6 78 31-114 2-84 (109)
225 2iw5_B Protein corest, REST co 35.4 45 0.0015 33.4 5.4 55 215-274 126-180 (235)
226 1yxy_A Putative N-acetylmannos 35.2 1.3E+02 0.0044 28.7 8.7 84 47-135 122-215 (234)
227 3iwp_A Copper homeostasis prot 35.2 1.4E+02 0.0049 30.6 9.3 90 58-148 40-150 (287)
228 1v4v_A UDP-N-acetylglucosamine 35.1 2.5E+02 0.0085 27.8 11.2 100 34-151 231-333 (376)
229 3l4e_A Uncharacterized peptida 34.9 1.4E+02 0.0049 28.6 8.9 62 33-102 27-98 (206)
230 1qdl_B Protein (anthranilate s 34.7 21 0.00071 33.6 2.8 50 34-85 1-51 (195)
231 4e38_A Keto-hydroxyglutarate-a 33.8 1.3E+02 0.0045 29.8 8.6 90 51-143 29-120 (232)
232 2eqr_A N-COR1, N-COR, nuclear 33.8 95 0.0032 24.2 6.1 45 218-267 8-52 (61)
233 1vgv_A UDP-N-acetylglucosamine 33.1 1.9E+02 0.0064 28.7 9.8 42 105-151 300-341 (384)
234 2elk_A SPCC24B10.08C protein; 33.1 74 0.0025 24.5 5.3 45 224-272 11-56 (58)
235 2cvh_A DNA repair and recombin 32.8 35 0.0012 31.5 4.0 100 14-116 29-156 (220)
236 2ixa_A Alpha-N-acetylgalactosa 32.3 1.4E+02 0.0047 31.6 9.1 112 33-150 20-139 (444)
237 3okp_A GDP-mannose-dependent a 31.8 94 0.0032 30.8 7.3 74 67-151 264-343 (394)
238 3s5p_A Ribose 5-phosphate isom 31.8 2.6E+02 0.009 26.5 9.8 120 23-151 11-146 (166)
239 2xxa_A Signal recognition part 31.7 74 0.0025 34.2 6.9 53 33-87 129-191 (433)
240 2akz_A Gamma enolase, neural; 31.7 75 0.0026 34.3 6.9 105 40-147 217-357 (439)
241 1dxe_A 2-dehydro-3-deoxy-galac 31.7 3.6E+02 0.012 26.4 11.5 98 49-148 10-112 (256)
242 3o07_A Pyridoxine biosynthesis 31.7 75 0.0026 32.8 6.5 59 94-152 186-251 (291)
243 1rd5_A Tryptophan synthase alp 31.6 74 0.0025 31.2 6.4 42 94-135 189-230 (262)
244 1qop_A Tryptophan synthase alp 31.4 1.5E+02 0.0051 29.4 8.7 41 95-135 194-234 (268)
245 3u81_A Catechol O-methyltransf 31.4 98 0.0034 28.9 7.0 63 28-90 78-145 (221)
246 2iw1_A Lipopolysaccharide core 31.1 1.5E+02 0.0052 29.1 8.7 106 33-151 228-336 (374)
247 3inp_A D-ribulose-phosphate 3- 30.9 75 0.0026 31.8 6.3 84 64-149 40-130 (246)
248 2r60_A Glycosyl transferase, g 30.7 3.2E+02 0.011 28.4 11.6 111 34-151 295-423 (499)
249 4e5v_A Putative THUA-like prot 30.6 60 0.0021 32.9 5.6 59 32-93 3-72 (281)
250 3tfw_A Putative O-methyltransf 30.6 2.6E+02 0.0089 26.7 10.1 72 27-101 82-156 (248)
251 1vrd_A Inosine-5'-monophosphat 30.4 3.2E+02 0.011 29.3 11.8 99 33-134 249-368 (494)
252 2qzs_A Glycogen synthase; glyc 30.4 2.8E+02 0.0096 28.6 11.0 107 33-150 321-439 (485)
253 3ffs_A Inosine-5-monophosphate 29.8 1.1E+02 0.0038 32.7 7.8 65 67-134 146-211 (400)
254 3tha_A Tryptophan synthase alp 29.8 34 0.0012 34.5 3.6 54 95-151 79-138 (252)
255 2fhp_A Methylase, putative; al 29.7 2.8E+02 0.0095 24.4 9.5 68 34-101 68-138 (187)
256 1h6d_A Precursor form of gluco 29.4 2.1E+02 0.0072 30.2 9.9 107 33-150 83-198 (433)
257 2hnk_A SAM-dependent O-methylt 28.9 2.3E+02 0.0079 26.6 9.3 70 30-101 82-167 (239)
258 2al1_A Enolase 1, 2-phospho-D- 28.7 73 0.0025 34.4 6.2 95 40-137 219-347 (436)
259 1p0k_A Isopentenyl-diphosphate 28.4 4.7E+02 0.016 26.6 12.2 88 45-135 166-280 (349)
260 3ceu_A Thiamine phosphate pyro 28.4 74 0.0025 30.3 5.6 69 61-134 93-171 (210)
261 1h1y_A D-ribulose-5-phosphate 28.0 58 0.002 31.4 4.8 83 52-135 108-201 (228)
262 3euw_A MYO-inositol dehydrogen 27.8 3.2E+02 0.011 27.3 10.7 105 32-149 3-112 (344)
263 3ip3_A Oxidoreductase, putativ 27.5 53 0.0018 33.3 4.7 34 118-151 81-116 (337)
264 3llv_A Exopolyphosphatase-rela 27.5 2.1E+02 0.0071 24.5 8.0 91 33-133 29-121 (141)
265 3tqp_A Enolase; energy metabol 27.4 83 0.0028 34.0 6.3 72 65-137 264-339 (428)
266 3vk5_A MOEO5; TIM barrel, tran 27.4 98 0.0034 31.9 6.5 56 80-136 200-257 (286)
267 2f6u_A GGGPS, (S)-3-O-geranylg 27.2 55 0.0019 32.6 4.5 58 67-134 23-83 (234)
268 3s83_A Ggdef family protein; s 27.2 2.3E+02 0.0078 27.2 9.0 113 32-147 123-253 (259)
269 1ypf_A GMP reductase; GUAC, pu 27.2 5.1E+02 0.018 26.4 14.1 90 41-134 132-238 (336)
270 1izc_A Macrophomate synthase i 26.8 4.1E+02 0.014 27.5 11.4 88 60-149 46-139 (339)
271 3ot5_A UDP-N-acetylglucosamine 26.8 4.2E+02 0.014 27.4 11.6 43 104-151 318-360 (403)
272 1tqx_A D-ribulose-5-phosphate 26.5 1.2E+02 0.0039 29.9 6.7 82 52-135 109-201 (227)
273 1j8m_F SRP54, signal recogniti 26.0 25 0.00085 35.8 1.8 54 32-87 125-188 (297)
274 2ho3_A Oxidoreductase, GFO/IDH 25.7 4.8E+02 0.016 25.8 11.4 103 34-149 2-109 (325)
275 3qhp_A Type 1 capsular polysac 25.4 2E+02 0.0068 24.8 7.5 107 32-151 31-139 (166)
276 3lp8_A Phosphoribosylamine-gly 25.4 1.5E+02 0.0053 31.4 8.0 63 23-87 11-91 (442)
277 3q2i_A Dehydrogenase; rossmann 25.3 4.2E+02 0.014 26.6 11.0 107 32-151 12-124 (354)
278 2p10_A MLL9387 protein; putati 25.3 3.9E+02 0.013 27.4 10.5 76 58-136 165-260 (286)
279 2px0_A Flagellar biosynthesis 25.1 98 0.0034 31.2 6.1 59 32-93 133-194 (296)
280 3jy6_A Transcriptional regulat 24.9 2.8E+02 0.0095 26.2 9.1 66 44-116 24-95 (276)
281 3rc1_A Sugar 3-ketoreductase; 24.9 5.5E+02 0.019 25.9 14.1 106 32-151 26-138 (350)
282 2x6q_A Trehalose-synthase TRET 24.7 4.9E+02 0.017 26.0 11.4 106 33-151 262-378 (416)
283 2qfm_A Spermine synthase; sper 24.4 1.3E+02 0.0044 31.9 7.0 56 34-89 212-277 (364)
284 3gr7_A NADPH dehydrogenase; fl 24.2 4.6E+02 0.016 26.9 11.2 39 95-133 266-304 (340)
285 1mu5_A Type II DNA topoisomera 24.2 14 0.00047 40.5 -0.5 100 1-102 113-244 (471)
286 1wgx_A KIAA1903 protein; MYB D 24.0 1.1E+02 0.0039 25.2 5.1 40 224-267 10-52 (73)
287 1viz_A PCRB protein homolog; s 23.9 98 0.0034 30.8 5.7 54 67-134 23-83 (240)
288 2xci_A KDO-transferase, 3-deox 23.7 1.4E+02 0.0048 30.6 7.1 50 97-151 295-345 (374)
289 1ws6_A Methyltransferase; stru 23.7 2.9E+02 0.0098 23.8 8.3 67 35-102 65-132 (171)
290 3khj_A Inosine-5-monophosphate 23.5 3.4E+02 0.012 28.3 10.1 65 67-134 107-172 (361)
291 2pyy_A Ionotropic glutamate re 23.5 1.9E+02 0.0066 25.7 7.2 49 32-87 111-159 (228)
292 3tj4_A Mandelate racemase; eno 23.3 3.5E+02 0.012 27.9 10.1 78 65-144 209-287 (372)
293 2xzm_U Ribosomal protein L7AE 23.3 2.7E+02 0.0092 24.9 8.0 74 38-113 1-74 (126)
294 2fli_A Ribulose-phosphate 3-ep 23.2 69 0.0024 30.2 4.3 55 79-134 131-197 (220)
295 3ic5_A Putative saccharopine d 23.1 2.3E+02 0.0078 22.9 7.1 54 32-88 4-58 (118)
296 3l9w_A Glutathione-regulated p 23.0 1.5E+02 0.0051 31.5 7.2 93 32-134 26-121 (413)
297 1jvn_A Glutamine, bifunctional 22.8 3.9E+02 0.013 29.4 10.8 79 66-146 454-543 (555)
298 4gqa_A NAD binding oxidoreduct 22.7 5.9E+02 0.02 26.1 11.8 111 28-151 21-145 (412)
299 1wa3_A 2-keto-3-deoxy-6-phosph 22.6 4.2E+02 0.015 24.4 9.7 81 61-145 16-99 (205)
300 3axs_A Probable N(2),N(2)-dime 22.6 3E+02 0.01 29.1 9.5 77 34-116 78-160 (392)
301 2iuy_A Avigt4, glycosyltransfe 22.6 79 0.0027 31.1 4.7 106 33-150 188-306 (342)
302 3kru_A NADH:flavin oxidoreduct 22.4 4.5E+02 0.016 27.2 10.7 69 66-134 229-305 (343)
303 3ec7_A Putative dehydrogenase; 22.3 5.4E+02 0.019 26.0 11.2 107 33-151 23-136 (357)
304 1gox_A (S)-2-hydroxy-acid oxid 22.2 2.7E+02 0.0094 28.9 9.0 86 47-135 215-309 (370)
305 2iuy_A Avigt4, glycosyltransfe 22.0 1.9E+02 0.0064 28.3 7.4 55 33-89 3-94 (342)
306 3u3x_A Oxidoreductase; structu 22.0 4.2E+02 0.014 27.0 10.3 104 33-149 26-135 (361)
307 1jub_A Dihydroorotate dehydrog 21.9 2.2E+02 0.0076 28.4 8.0 66 67-134 109-191 (311)
308 3cea_A MYO-inositol 2-dehydrog 21.8 4.7E+02 0.016 26.0 10.5 106 32-149 7-118 (346)
309 1zh8_A Oxidoreductase; TM0312, 21.8 6.1E+02 0.021 25.4 12.5 106 32-150 17-130 (340)
310 2glx_A 1,5-anhydro-D-fructose 21.6 5.1E+02 0.018 25.5 10.7 45 106-150 62-110 (332)
311 3kux_A Putative oxidoreductase 21.5 4.3E+02 0.015 26.6 10.2 106 30-150 4-115 (352)
312 1rpx_A Protein (ribulose-phosp 21.5 57 0.002 31.2 3.3 55 80-135 141-207 (230)
313 4fxs_A Inosine-5'-monophosphat 21.5 1.8E+02 0.006 31.8 7.6 65 67-134 233-299 (496)
314 3mz0_A Inositol 2-dehydrogenas 21.4 6.2E+02 0.021 25.3 12.8 107 33-151 2-115 (344)
315 4gud_A Imidazole glycerol phos 21.4 96 0.0033 29.1 4.8 43 35-85 4-46 (211)
316 1qap_A Quinolinic acid phospho 21.4 6.5E+02 0.022 25.5 12.4 90 36-133 182-278 (296)
317 3ajd_A Putative methyltransfer 21.3 3.8E+02 0.013 26.0 9.5 56 32-87 107-164 (274)
318 1lst_A Lysine, arginine, ornit 21.2 2E+02 0.0067 26.1 6.9 52 33-87 111-162 (239)
319 2kpo_A Rossmann 2X2 fold prote 21.1 3.8E+02 0.013 22.7 10.6 43 34-76 3-45 (110)
320 1vlj_A NADH-dependent butanol 21.0 2.4E+02 0.0083 29.6 8.4 64 34-102 44-121 (407)
321 3p9n_A Possible methyltransfer 20.8 3.5E+02 0.012 24.1 8.5 67 34-102 68-138 (189)
322 2gl5_A Putative dehydratase pr 20.8 2.5E+02 0.0086 29.3 8.4 78 65-144 230-308 (410)
323 3ctl_A D-allulose-6-phosphate 20.7 1.7E+02 0.0059 28.6 6.7 81 65-149 14-102 (231)
324 1x1o_A Nicotinate-nucleotide p 20.7 6.5E+02 0.022 25.4 11.2 93 35-134 168-267 (286)
325 1rpx_A Protein (ribulose-phosp 20.5 2.6E+02 0.009 26.5 7.9 57 93-149 55-114 (230)
326 3tsa_A SPNG, NDP-rhamnosyltran 20.5 1.9E+02 0.0064 29.0 7.1 72 33-112 1-141 (391)
327 3db2_A Putative NADPH-dependen 20.4 4.9E+02 0.017 26.1 10.4 106 32-151 4-115 (354)
328 2i1o_A Nicotinate phosphoribos 20.3 5E+02 0.017 27.5 10.7 86 46-132 197-295 (398)
329 3sjm_A Telomeric repeat-bindin 20.3 2.8E+02 0.0097 21.7 6.7 43 221-265 10-52 (64)
330 1jcn_A Inosine monophosphate d 20.2 2.5E+02 0.0086 30.4 8.5 66 66-134 256-323 (514)
331 3pfn_A NAD kinase; structural 20.1 1.5E+02 0.0051 31.4 6.4 102 35-155 40-167 (365)
332 2gjl_A Hypothetical protein PA 20.1 3.5E+02 0.012 27.3 9.1 62 65-135 84-145 (328)
333 4hkt_A Inositol 2-dehydrogenas 20.1 6.4E+02 0.022 24.9 12.7 104 33-150 3-111 (331)
334 2ffh_A Protein (FFH); SRP54, s 20.1 68 0.0023 34.5 3.9 55 31-87 124-188 (425)
335 2dul_A N(2),N(2)-dimethylguano 20.0 3.6E+02 0.012 28.1 9.4 76 34-115 72-165 (378)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=1.4e-24 Score=200.84 Aligned_cols=123 Identities=28% Similarity=0.561 Sum_probs=112.0
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-- 104 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-- 104 (636)
.-+.+++|||||||++..|+.++.+|+..||. |.+|.+|.+|++.+++.. ||+||+|++||+|||++++++||..
T Consensus 7 ~~m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~ 84 (134)
T 3to5_A 7 AILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEE 84 (134)
T ss_dssp --CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTT
T ss_pred HHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCC
Confidence 34567899999999999999999999999986 678999999999999876 9999999999999999999999753
Q ss_pred -CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 105 -MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 105 -~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.++|||++|++.+.+.+.+|++.||++||.||++.++|...+++++++
T Consensus 85 ~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 85 LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999887643
No 2
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.88 E-value=4.9e-23 Score=168.20 Aligned_cols=62 Identities=65% Similarity=1.082 Sum_probs=60.3
Q ss_pred CCCCCcceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 006661 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRL 278 (636)
Q Consensus 217 ~~KKpRVvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASHLQKyRl~LKrl 278 (636)
..+|+|+.||.|||++|++||++||.++|+||+|+++|+|+|||++||+|||||||++++|+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 56899999999999999999999999999999999999999999999999999999999986
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=8.4e-21 Score=166.96 Aligned_cols=116 Identities=27% Similarity=0.432 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPVI 110 (636)
.|||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|++||++||++++++++.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999997765 9999999999999999999999753 579999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
++|+..+.+...++++.||++||.||++.++|...++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988763
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=7.7e-21 Score=166.42 Aligned_cols=117 Identities=30% Similarity=0.491 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
.|||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++....+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+..+.....++++.||++||.||++.++|...+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999887653
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.85 E-value=2.2e-20 Score=167.28 Aligned_cols=119 Identities=32% Similarity=0.542 Sum_probs=111.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~iPV 109 (636)
..+||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999999999999999999999999999999999999998765 999999999999999999999975 357999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|++|+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 6
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.85 E-value=8.6e-20 Score=180.45 Aligned_cols=120 Identities=33% Similarity=0.541 Sum_probs=113.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVI 110 (636)
..+||||||||+..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|++||++||++++++|+.. +.+|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999998876 9999999999999999999999754 689999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
No 7
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=6.6e-23 Score=187.44 Aligned_cols=114 Identities=26% Similarity=0.388 Sum_probs=102.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
.+.+|||||||++.++..++.+|+..||+|+ +|.++.+|++++++.. ||+||+|++||+|||++++++|+. .++||
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipv 82 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPF 82 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCE
Confidence 4578999999999999999999999999985 7999999999998865 999999999999999999999985 57999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
|++|++.+.... .++|+.+||.||++.++|..+++++.
T Consensus 83 I~lTa~~~~~~~---~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 83 IFATGYGSKGLD---TRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CCBCTTCTTSCC---SSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEEecCccHHHH---HhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 999999876543 46799999999999999999887654
No 8
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.84 E-value=1.9e-20 Score=181.20 Aligned_cols=143 Identities=29% Similarity=0.433 Sum_probs=108.3
Q ss_pred HHcCCC-------CCCCcccccccCC-------------CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHH
Q 006661 9 QSSGGS-------GYGSSRAADVAVP-------------DQFPAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAA 67 (636)
Q Consensus 9 ~~~gG~-------~~~s~~~~d~~~~-------------d~fP~glRVLIVDDD~~~re~L~~lL~~~gy-~V~tasdg~ 67 (636)
-+|||. +.|++|.+.+++. .....+++|||||||+..+..++.+|...+| .|..+.++.
T Consensus 17 ~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~ 96 (206)
T 3mm4_A 17 GSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGK 96 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHH
T ss_pred cccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHH
Confidence 468883 7888888777642 1123468999999999999999999999998 899999999
Q ss_pred HHHHHHHHc-----------CCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCCcEEEEecCC-CHHHHHHHHHcCCC
Q 006661 68 VALDILRER-----------KGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDLPVIMMSADG-RVSAVMRGIRHGAC 130 (636)
Q Consensus 68 eALe~Lre~-----------k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-----~~iPVIILSa~~-d~e~v~kAle~GA~ 130 (636)
+|++.++.. ...|||||+|+.||++||++++++|+.. +.+|||++|++. +.+.+.++++.||+
T Consensus 97 eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~ 176 (206)
T 3mm4_A 97 EALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMD 176 (206)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCS
T ss_pred HHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCC
Confidence 999999874 1249999999999999999999999753 789999999998 88889999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHh
Q 006661 131 DYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 131 DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+||.||++ +|..+++++++++
T Consensus 177 ~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 177 AFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp EEEETTCT--THHHHHHHHC---
T ss_pred EEEcCcHH--HHHHHHHHHHhhh
Confidence 99999999 8988888887654
No 9
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.84 E-value=3.5e-20 Score=165.33 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=107.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy-~V~tasdg~eALe~Lre~---k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~ 106 (636)
.+|||||||++..+..++.+|...+| .|..+.++.+|++.++.. ...||+||+|++||++||+++++.|+. ...
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 47899999999999999999998887 588999999999998761 124999999999999999999999975 357
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
+|||++|++.+.+...++++.||++||.||++.++|..++++++.
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988754
No 10
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.83 E-value=1.7e-19 Score=159.38 Aligned_cols=118 Identities=29% Similarity=0.557 Sum_probs=108.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iP 108 (636)
++|||||||++..++.++.+|++.+|. |..+.++.+|++.+... ..||+||+|++||++||++++++|+.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999999985 88999999999988764 249999999999999999999999753 5789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
||++|++.+.....++++.||++||.||++.++|..+++.++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
No 11
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.4e-19 Score=163.80 Aligned_cols=120 Identities=28% Similarity=0.450 Sum_probs=106.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-----cC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-----EM 105 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-----~~ 105 (636)
..++|||||||++..+..++.+|.+.+|.|..+.++.+|++.++... ||+||+|++||++||++++++|+. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 45689999999999999999999999999999999999999998765 999999999999999999999963 24
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.+|||++|+..+.+...++++.||++||.||++.++|..++..+...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887543
No 12
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.82 E-value=5.9e-19 Score=169.86 Aligned_cols=119 Identities=29% Similarity=0.543 Sum_probs=112.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+++|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 579999999999999999999999999999999999999998765 999999999999999999999975 46899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999998765
No 13
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.82 E-value=2e-19 Score=172.66 Aligned_cols=165 Identities=18% Similarity=0.292 Sum_probs=132.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
.+++||||||++..+..++.+|... +|.+ ..+.++.+|++.+.... ||+||+|+.||++||+++++.|+. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 4589999999999999999999986 4887 68999999999998866 999999999999999999999975 46799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc-----c--c-CCcccccccCCCchhHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----N--S-GSLEETDHHKRGSDEIE 180 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~-----~--s-~sle~~~~~klt~rEie 180 (636)
||++|+..+.+...++++.||++||.||++.++|..++++++++......... . . ..........++.+|.+
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 161 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 161 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999876432211100 0 0 00001122457889999
Q ss_pred HHHhhccCCcceeehhhh
Q 006661 181 YASSVNEGTEGTFKAQRK 198 (636)
Q Consensus 181 ~lssv~eG~e~~~ka~~k 198 (636)
++..+.+|.....++...
T Consensus 162 vl~~l~~g~s~~~Ia~~l 179 (215)
T 1a04_A 162 ILKLIAQGLPNKMIARRL 179 (215)
T ss_dssp HHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 999888886544444433
No 14
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.82 E-value=5.2e-19 Score=152.94 Aligned_cols=117 Identities=27% Similarity=0.409 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999999974 467999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|+..+.....++++.||++|+.||++.++|...+++++++
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988765
No 15
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.82 E-value=3.3e-19 Score=153.59 Aligned_cols=117 Identities=26% Similarity=0.470 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
.+||||||++..+..++..|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999877889999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+..+.....++++.||++||.||++.++|...+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999887753
No 16
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.82 E-value=5.1e-19 Score=153.56 Aligned_cols=117 Identities=21% Similarity=0.385 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
.+||||||++..+..++.+|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765
No 17
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.82 E-value=3.3e-19 Score=162.88 Aligned_cols=121 Identities=25% Similarity=0.400 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iP 108 (636)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 3579999999999999999999999999999999999999997654 9999999999999999999999764 6799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987653
No 18
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=4.4e-19 Score=157.40 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=111.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 468999999999999999999999999999999999999998765 999999999999999999999975 46899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988654
No 19
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=3.3e-19 Score=159.62 Aligned_cols=120 Identities=21% Similarity=0.364 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
..++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+|||+
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ 80 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVY 80 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEE
Confidence 3579999999999999999999998999999999999999998765 99999999999999999999998656899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987654
No 20
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.82 E-value=9e-20 Score=181.64 Aligned_cols=154 Identities=26% Similarity=0.359 Sum_probs=129.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
.++|||||||+..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999988788999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccc-----cC--CcccccccCCCchhHHHHHhh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----SG--SLEETDHHKRGSDEIEYASSV 185 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~-----s~--sle~~~~~klt~rEie~lssv 185 (636)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.......... .. .........++.+|.+++..+
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll 194 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 194 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764322111000 00 000112235889999999888
Q ss_pred ccC
Q 006661 186 NEG 188 (636)
Q Consensus 186 ~eG 188 (636)
.++
T Consensus 195 ~~g 197 (249)
T 3q9s_A 195 IRQ 197 (249)
T ss_dssp HHS
T ss_pred HHC
Confidence 776
No 21
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.81 E-value=5.8e-19 Score=153.39 Aligned_cols=118 Identities=20% Similarity=0.410 Sum_probs=110.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
..+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|+|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 358999999999999999999998999999999999999998765 999999999999999999999976678999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|+..+.....++++.||++||.||++.++|...+++++++
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765
No 22
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.81 E-value=6.3e-20 Score=173.37 Aligned_cols=120 Identities=21% Similarity=0.354 Sum_probs=111.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|++||++||++++++|+. .+++|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 3579999999999999999999999999999999999999997655 999999999999999999999975 5689999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|++.+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998877654
No 23
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.81 E-value=5.6e-19 Score=154.82 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=109.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
+.+||||||++..+..++.+|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999887654 999999999999999999999975 46899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988653
No 24
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.81 E-value=6.3e-19 Score=159.83 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=110.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHc-----CCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER-----KGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre~-----k~~pDLVIlDI~MPdmDG~ELLk~Ir~ 103 (636)
...++||||||++..+..++.+|...++ .|..+.++.+|++.++.. ...||+||+|+.||++||+++++.|+.
T Consensus 6 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 6 NPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ 85 (149)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 4468999999999999999999998876 788999999999998752 134999999999999999999999976
Q ss_pred c---CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 104 ~---~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
. +.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++.+..
T Consensus 86 ~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 86 NPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp CTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 4 5789999999999999999999999999999999999999999987654
No 25
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.81 E-value=5e-19 Score=152.70 Aligned_cols=118 Identities=28% Similarity=0.380 Sum_probs=110.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
++||||||++..+..++.+|...+|.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++..+.+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 68999999999999999999999999999999999999888765 9999999999999999999999876789999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887653
No 26
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.81 E-value=4.6e-19 Score=154.62 Aligned_cols=116 Identities=25% Similarity=0.466 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999999975 578999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|+..+.+...++++.||++||.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987653
No 27
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.81 E-value=1.1e-19 Score=162.26 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH-cCCCceEEEEeCCCC-CCCHHHHHHHHhc---cC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMP-DMDGFKLLEHIGL---EM 105 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~-~gy~V~tasdg~eALe~Lre-~k~~pDLVIlDI~MP-dmDG~ELLk~Ir~---~~ 105 (636)
.+++||||||++..+..++.+|.. .+|.|..+.++.+|++.++. .. ||+||+|+.|| +++|++++++|+. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 468999999999999999999999 89999999999999999976 54 99999999999 9999999999975 57
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
.+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886543
No 28
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.81 E-value=7.1e-19 Score=159.82 Aligned_cols=123 Identities=28% Similarity=0.438 Sum_probs=114.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
...+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSE
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCe
Confidence 445689999999999999999999999999999999999999998865 999999999999999999999975 46899
Q ss_pred EEEEecCCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 109 VIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~G-A~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
||++|+..+.+...++++.| |++||.||++.++|..++++++++..
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 99999999999999999999 99999999999999999999987653
No 29
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=1e-18 Score=156.01 Aligned_cols=122 Identities=26% Similarity=0.476 Sum_probs=112.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
.+|||||||++..+..++.+|...+|.|..+.++.+|++.+......||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 47999999999999999999999999999999999999999853345999999999999999999999974 46799999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
+|+..+.+...++++.||++||.||++.++|..+++++++++.
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK 125 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987653
No 30
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.81 E-value=7.7e-20 Score=174.38 Aligned_cols=162 Identities=23% Similarity=0.349 Sum_probs=129.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
...+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||++||+++++.|+. .+.+|||
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 80 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQ--HGCLVLDMRMPGMSGIELQEQLTAISDGIPIV 80 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTS--CEEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3468999999999999999999999999999999999999886544 999999999999999999999975 4689999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHHhhccCCc
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s~sle~~~~~klt~rEie~lssv~eG~e 190 (636)
++|++.+.+...++++.||++||.||++.++|...+++++++............ ........++.+|.+++..+.+|..
T Consensus 81 ~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~Lt~rE~~vl~~l~~g~s 159 (208)
T 1yio_A 81 FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQD-QLEQLFSSLTGREQQVLQLTIRGLM 159 (208)
T ss_dssp EEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCHHHHHHHHHHTTTCC
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHcCCc
Confidence 999999998999999999999999999999999999998875432111100000 0011123578888888888877754
Q ss_pred ceeehh
Q 006661 191 GTFKAQ 196 (636)
Q Consensus 191 ~~~ka~ 196 (636)
...++.
T Consensus 160 ~~~Ia~ 165 (208)
T 1yio_A 160 NKQIAG 165 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 31
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=9.7e-19 Score=153.02 Aligned_cols=119 Identities=32% Similarity=0.546 Sum_probs=109.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~i 107 (636)
..+|||||||++..+..++.+|...+| .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--YGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCC--CCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457999999999999999999999898 7899999999999987654 999999999999999999999975 3578
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|||++|+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 32
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.81 E-value=6.9e-19 Score=152.29 Aligned_cols=116 Identities=28% Similarity=0.485 Sum_probs=107.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
+++||||||++..+..++.+|...+|. +..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 478999999999999999999999999 568999999999998765 999999999999999999999964 4689999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
++|+..+.+...++++.||++||.||++.++|...+++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888753
No 33
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.81 E-value=4.3e-19 Score=155.50 Aligned_cols=120 Identities=27% Similarity=0.468 Sum_probs=110.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD 106 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy-~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~ 106 (636)
..+++||||||++..+..++.+|...+| .|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 4 AEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTT
T ss_pred cccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccC
Confidence 3457999999999999999999999898 7889999999999998754 9999999999999999999999763 57
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999987653
No 34
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.80 E-value=3e-19 Score=158.95 Aligned_cols=123 Identities=24% Similarity=0.390 Sum_probs=112.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~i 107 (636)
...++||||||++..+..++.+|.+.+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDL 81 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTC
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCC
Confidence 34579999999999999999999999999999999999999998865 999999999999999999999975 4689
Q ss_pred cEEEEecCCCHHHHH-HHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 108 PVIMMSADGRVSAVM-RGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 108 PVIILSa~~d~e~v~-kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
|||++|+..+..... ++++.||++||.||++.++|..++++++++...
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 82 AIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 999999998887777 899999999999999999999999999987643
No 35
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.80 E-value=9.7e-19 Score=158.45 Aligned_cols=121 Identities=23% Similarity=0.419 Sum_probs=109.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-------cCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-------RKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre-------~k~~pDLVIlDI~MPdmDG~ELLk~Ir 102 (636)
.+++||||||++..+..++.+|...++ .|..+.++.+|++.++. ....||+||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 468999999999999999999999988 89999999999999961 124599999999999999999999997
Q ss_pred c---cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 103 L---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 103 ~---~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
. .+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++.+.
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLF 135 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 5 4679999999999999999999999999999999999999999998654
No 36
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.80 E-value=2.1e-19 Score=161.04 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=111.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~Ir~~~~iPVI 110 (636)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|+..+.+|||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 357999999999999999999999999999999999999999762 24999999999995 9999999999877899999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
++|+..+.+.+.++++.||++||.||++.++|..++++++++..
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999987653
No 37
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.3e-18 Score=153.00 Aligned_cols=122 Identities=19% Similarity=0.311 Sum_probs=111.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC-----CCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK-----GCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre~k-----~~pDLVIlDI~MPdmDG~ELLk~Ir~~- 104 (636)
+++||||||++..+..++.+|...++ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.|+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999988 8999999999999997610 349999999999999999999999764
Q ss_pred --CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 105 --~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
+.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999987653
No 38
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.80 E-value=9.5e-19 Score=156.78 Aligned_cols=122 Identities=17% Similarity=0.302 Sum_probs=112.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~--V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~ 106 (636)
.+++||||||++..+..++.+|...++. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 4579999999999999999999999887 889999999999997654 999999999999999999999976 468
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHhhc
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRWN 155 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi-~~eeLk~~Iq~vlrkk~~ 155 (636)
+|||++|+..+.+...++++.||++||.||+ +.++|..++++++++...
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999987543
No 39
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.80 E-value=1.4e-18 Score=153.93 Aligned_cols=122 Identities=23% Similarity=0.303 Sum_probs=110.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCCc
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP 108 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~--~~iP 108 (636)
+.+.+||||||++..+..++.+|...+|.|..+.++.+|+..+... ..||+||+|+.||+++|++++++|+.. +.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 4568999999999999999999999999999999999999998764 249999999999999999999999764 6799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
||++|+..+.+...++++.||++||.||++.++|..+++++..+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999887654
No 40
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.80 E-value=8e-19 Score=158.99 Aligned_cols=124 Identities=22% Similarity=0.326 Sum_probs=111.4
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E 104 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~ 104 (636)
.....++|||||||++..++.++.+|...+ +.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .
T Consensus 15 ~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~ 92 (150)
T 4e7p_A 15 VPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEK 92 (150)
T ss_dssp -----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred CCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 334457899999999999999999999876 78999999999999998755 999999999999999999999975 5
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+.+|||++|+..+.+...++++.||++||.||++.++|..+++++++++
T Consensus 93 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 93 LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999999999999999998764
No 41
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.80 E-value=1.9e-18 Score=167.13 Aligned_cols=118 Identities=28% Similarity=0.424 Sum_probs=111.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+..+.+|||++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 69999999999999999999999999999999999999998765 9999999999999999999999877889999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 114 a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999988654
No 42
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.80 E-value=8e-19 Score=155.64 Aligned_cols=122 Identities=21% Similarity=0.366 Sum_probs=113.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
.++|||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4689999999999999999999998999999999999999998876 999999999999999999999975 4679999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999886543
No 43
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1.2e-18 Score=155.09 Aligned_cols=120 Identities=19% Similarity=0.310 Sum_probs=111.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-----cCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-----RKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre-----~k~~pDLVIlDI~MPdmDG~ELLk~Ir~ 103 (636)
...++||||||++..+..++.+|...++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+.
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~ 84 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRW--PSIICIDINMPGINGWELIDLFKQ 84 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCC--CSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCC--CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999999998 89999999999999987 44 999999999999999999999975
Q ss_pred -----cCCCcEEEEecCCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 104 -----EMDLPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 104 -----~~~iPVIILSa~~d~e~v~kAle~G-A~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
.+.+|||++|+..+.+...+++..| |++||.||++.++|..+++++...
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999 999999999999999999987653
No 44
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=7e-19 Score=154.66 Aligned_cols=120 Identities=26% Similarity=0.445 Sum_probs=103.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
.++|||||||++..+..++.+|...+|.+..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4679999999999999999999999999999999999999997655 999999999999999999999974 4689999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi-~~eeLk~~Iq~vlrkk 153 (636)
++|+..+.+...++++.||++||.||+ +.++|..+++++++++
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999988654
No 45
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.80 E-value=2.9e-19 Score=159.28 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=111.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhc-cCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir~-~~~iP 108 (636)
..++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+ ++|++++++|+. .+.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDD--AIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTT--EEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 4579999999999999999999999999999999999999887654 999999999999 999999999975 46899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
||++|+..+.+...++++.||++||.||++.++|..+++++..+..
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999987653
No 46
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.80 E-value=1.9e-18 Score=153.21 Aligned_cols=122 Identities=26% Similarity=0.351 Sum_probs=111.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---c
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRR-CLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---E 104 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~-~gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~ 104 (636)
...+++||||||++..+..++.+|.. .+|. |..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .
T Consensus 5 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~ 82 (143)
T 3cnb_A 5 VKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPAT 82 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTT
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCccc
Confidence 34578999999999999999999999 8999 999999999999998865 999999999999999999999976 4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+.+|||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 83 ANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 6799999999999999999999999999999999999999999998764
No 47
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.80 E-value=6.7e-19 Score=152.86 Aligned_cols=116 Identities=22% Similarity=0.401 Sum_probs=102.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPVI 110 (636)
.+||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999999999999999999999998765 9999999999999999999999753 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
++|+..+.+...++++.||++||.||++.++|...++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999988888999999999999999999999999988764
No 48
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.80 E-value=8.4e-19 Score=154.39 Aligned_cols=120 Identities=26% Similarity=0.346 Sum_probs=104.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~i 107 (636)
...++||||||++..+..++.+|. .+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+.. +.+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~ 78 (133)
T 3nhm_A 2 SLKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHI 78 (133)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCC
Confidence 346799999999999999999998 7899999999999999998865 9999999999999999999999763 579
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
|||++|+..+... .++++.||++||.||++.++|..++++++++..
T Consensus 79 pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 79 PVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp CEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 9999999988877 899999999999999999999999999998654
No 49
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.80 E-value=1.1e-18 Score=154.93 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=108.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
.++||||||++..+..++.+|...+ +.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcE
Confidence 3689999999999999999999876 56788999999999998765 999999999999999999999975 468999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 81 IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887543
No 50
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.80 E-value=9.6e-19 Score=154.12 Aligned_cols=119 Identities=28% Similarity=0.469 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~iP 108 (636)
+++||||||++..+..++.+|... +|.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCc
Confidence 368999999999999999999987 88865 8999999999998765 999999999999999999999975 35788
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
||++|+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999887643
No 51
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.80 E-value=4.6e-19 Score=155.21 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=107.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~iPV 109 (636)
+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 479999999999999999999999999999999999999998865 999999999999999999999975 467999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|++|+..+.+. .+++..||++||.||++.++|...+++..+.
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 99999998887 8899999999999999999999999887654
No 52
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.79 E-value=1.2e-18 Score=156.31 Aligned_cols=122 Identities=18% Similarity=0.370 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~i 107 (636)
..+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 45689999999999999999999999999999999999999998875 999999999999999999999975 4689
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987653
No 53
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.79 E-value=6e-19 Score=155.52 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=108.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
.+|||||||++..++.++.+|.+.+|.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 37999999999999999999999999987 8999999999998876 999999999999999999999974 4679999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999999999999999987653
No 54
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.79 E-value=2.5e-18 Score=153.18 Aligned_cols=123 Identities=23% Similarity=0.373 Sum_probs=112.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC--------CCceEEEEeCCCCCCCHHHHHHHH
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK--------GCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre~k--------~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
.+++||||||++..+..++.+|...+| .|..+.++.+|++.++... ..||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 467899999999999999999999988 8999999999999998611 349999999999999999999999
Q ss_pred hcc---CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 102 GLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 102 r~~---~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
+.. +.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++...
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 864 57999999999999999999999999999999999999999999987653
No 55
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.4e-18 Score=155.70 Aligned_cols=118 Identities=26% Similarity=0.453 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999999999999999999988999999999999999998765 999999999999999999999975 467899999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988654
No 56
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.79 E-value=1.7e-19 Score=185.15 Aligned_cols=117 Identities=23% Similarity=0.339 Sum_probs=108.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MP-dmDG~ELLk~Ir~~~~iPVI 110 (636)
+.+||||||++.++..++.+|+..||.|. .+.++.+|++.+.... |||||+|++|| +|||+++++.|+...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999999999999 9999999999999865 99999999999 79999999999876699999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|++.+ ...+|++.||++||.||++.++|..++++++.+.
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 9999864 4677999999999999999999999999998764
No 57
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.79 E-value=2.2e-18 Score=152.22 Aligned_cols=119 Identities=28% Similarity=0.501 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVII 111 (636)
+.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 468999999999999999999999999999999999999998765 9999999999999999999999754 6799999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999998888899999999999999999999999999887653
No 58
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.79 E-value=1.3e-18 Score=159.30 Aligned_cols=119 Identities=26% Similarity=0.387 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
.+++||||||++..++.++.+|...+|.|. .+.++.+|++.+++....|||||+|++||+++|++++++|+. .+.+||
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 457999999999999999999999999988 999999999999887213899999999999999999999974 568999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
|++|+..+.+...++++.||++||.||++.++|..++++++
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998765
No 59
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.78 E-value=3.5e-18 Score=151.33 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=112.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MP-dmDG~ELLk~Ir~~~~iPV 109 (636)
.+++||||||++..+..++.+|...+|.|. .+.++.+|++.++... ||+||+|+.|| +++|+++++.|+..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 468999999999999999999999999999 5999999999998876 99999999998 7999999999975588999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
|++|+..+.+...++++.|+++||.||++.++|..++++++++..
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999987653
No 60
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.78 E-value=1.5e-18 Score=165.76 Aligned_cols=122 Identities=26% Similarity=0.361 Sum_probs=112.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
++..++||||||++..+..++.+|...+|.|. .+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.....|
T Consensus 10 ~~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~p 87 (205)
T 1s8n_A 10 AAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAP 87 (205)
T ss_dssp -CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSC
T ss_pred cCCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCC
Confidence 34457999999999999999999999999988 8999999999998866 99999999999999999999998666679
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
||++|++.+.+...++++.||++||.||++.++|..++++++++.
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 61
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.78 E-value=2.1e-18 Score=173.39 Aligned_cols=122 Identities=30% Similarity=0.402 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iP 108 (636)
..+|||||||++..+..+...|...+|.|..+.++.+|++.++... .||+||+|++||++||++++++|+.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 4689999999999999999999999999999999999999997642 48999999999999999999999753 3589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
||++|+..+.....++++.||++||.||++.++|...++++++...
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999987653
No 62
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.78 E-value=7.6e-19 Score=172.13 Aligned_cols=154 Identities=25% Similarity=0.402 Sum_probs=127.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
.++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+|||++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 369999999999999999999999999999999999999998765 999999999999999999999987678999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCc----------ccccccCCCchhHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL----------EETDHHKRGSDEIEYA 182 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s~sl----------e~~~~~klt~rEie~l 182 (636)
|+..+...+.++++.||++||.||++.++|..+++.++++.............. .......++.+|.+++
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 162 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLL 162 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEEcccCHHHHHHH
Confidence 999999999999999999999999999999999999886542211110000000 0111235788999988
Q ss_pred HhhccC
Q 006661 183 SSVNEG 188 (636)
Q Consensus 183 ssv~eG 188 (636)
..+.++
T Consensus 163 ~~l~~~ 168 (238)
T 2gwr_A 163 VALARK 168 (238)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 887776
No 63
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.78 E-value=1.1e-18 Score=156.70 Aligned_cols=124 Identities=19% Similarity=0.303 Sum_probs=112.4
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHH--cCCCceEEEEeCCCCCCCHHHHHHHHhc-
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRE--RKGCFDVVLSDVHMPDMDGFKLLEHIGL- 103 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~g-y~V~tasdg~eALe~Lre--~k~~pDLVIlDI~MPdmDG~ELLk~Ir~- 103 (636)
.....+.+||||||++..+..++.+|...+ |.|..+.++.+++..+.+ .. ||+||+|+.||+++|++++++|+.
T Consensus 15 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~ 92 (146)
T 4dad_A 15 LYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDA--FDILMIDGAALDTAELAAIEKLSRL 92 (146)
T ss_dssp CCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTT--CSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCC--CCEEEEeCCCCCccHHHHHHHHHHh
Confidence 334457899999999999999999999988 999999999999887754 44 999999999999999999999974
Q ss_pred cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 104 ~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
.+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++++++
T Consensus 93 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 93 HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 46899999999999999999999999999999999999999999998754
No 64
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=1.6e-19 Score=160.39 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=109.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~g-y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iP 108 (636)
..+++||||||++..+..++.+|+..+ |.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 89 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTR--PGIVILDLGGGDLLGKPGIVEARALWATVP 89 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCC--CSEEEEEEETTGGGGSTTHHHHHGGGTTCC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccC--CCEEEEeCCCCCchHHHHHHHHHhhCCCCc
Confidence 346799999999999999999999999 99999999999999886654 9999999999999999999999754 5899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
||++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 90 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 90 LIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887643
No 65
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.78 E-value=4.2e-18 Score=149.74 Aligned_cols=120 Identities=23% Similarity=0.368 Sum_probs=102.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC---CC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DL 107 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~---~i 107 (636)
..+++||||||++..+..++.+|.+.+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+... ..
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQP 81 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCC
Confidence 34689999999999999999999999999999999999999998765 99999999999999999999997643 34
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+||+++...+. ...++++.||++||.||++.++|..+++++..+.
T Consensus 82 ~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 82 KILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 55555555544 7889999999999999999999999999887543
No 66
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.78 E-value=4.9e-19 Score=154.34 Aligned_cols=118 Identities=27% Similarity=0.452 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPV 109 (636)
.++||||||++..+..++.+|...+|.|..+.++.+|++.++.. .||+||+|+.||+++|++++++++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 36899999999999999999999999999999999999988654 49999999999999999999999754 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|++|+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
No 67
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.78 E-value=1.6e-18 Score=167.63 Aligned_cols=155 Identities=31% Similarity=0.426 Sum_probs=128.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
.++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999975 46899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhcc--c-ccccccCCc----------ccccccCCCchh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE--N-KEHENSGSL----------EETDHHKRGSDE 178 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~--~-ke~~~s~sl----------e~~~~~klt~rE 178 (636)
+|+..+.+...++++.||++||.||++.++|..++++++++.... . ......... .......++.+|
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE 164 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKRE 164 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEEEECCEEeccCHHH
Confidence 999999888899999999999999999999999999998865331 1 110000000 011224578899
Q ss_pred HHHHHhhccCC
Q 006661 179 IEYASSVNEGT 189 (636)
Q Consensus 179 ie~lssv~eG~ 189 (636)
.+++..+.++.
T Consensus 165 ~~vL~~l~~g~ 175 (233)
T 1ys7_A 165 FDLLAVLAEHK 175 (233)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99988887773
No 68
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.78 E-value=1.1e-18 Score=155.65 Aligned_cols=119 Identities=21% Similarity=0.320 Sum_probs=101.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPV 109 (636)
+++||||||++..+..++.+|... |.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 479999999999999999999987 99999999999999998876 9999999999999999999999754 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
|++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 999999999889999999999999999999999999999987653
No 69
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.78 E-value=3.5e-18 Score=152.65 Aligned_cols=118 Identities=30% Similarity=0.428 Sum_probs=106.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPV 109 (636)
.++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. ..+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 368999999999999999999999999999999999999998765 9999999999999999999999753 47899
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
|++|+..+......++..|+++||.||++.++|..++++++++
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 9999988766666667778899999999999999999988754
No 70
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=6.3e-18 Score=153.10 Aligned_cols=125 Identities=25% Similarity=0.334 Sum_probs=111.3
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E 104 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~--V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~ 104 (636)
...+.+.|||||||++..++.++.+|...++. |..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .
T Consensus 10 ~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~ 87 (152)
T 3eul_A 10 NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYE 87 (152)
T ss_dssp ----CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred CCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 44567789999999999999999999998754 558999999999998876 999999999999999999999974 4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
+.+|||++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 67999999999999999999999999999999999999999999987653
No 71
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.77 E-value=4.4e-18 Score=170.12 Aligned_cols=121 Identities=31% Similarity=0.475 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
..+++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|++||+|||++++++|+. .+.+||
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcE
Confidence 35689999999999999999999999999999999999999998765 999999999999999999999975 468999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|++|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654
No 72
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.77 E-value=1.3e-17 Score=160.65 Aligned_cols=116 Identities=27% Similarity=0.372 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVII 111 (636)
+++||||||++..+..++.+|...+ .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 76 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETRPETWVIL 76 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 4699999999999999999999888 899999999999876 3 49999999999999999999999754 7899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999998764
No 73
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.77 E-value=7.2e-18 Score=152.87 Aligned_cols=122 Identities=25% Similarity=0.458 Sum_probs=111.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
..+++||||||++..++.++.+|+. +|.|..+.++.+|++.++... +||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 2 ~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 79 (151)
T 3kcn_A 2 SLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVY 79 (151)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEE
Confidence 3468999999999999999999976 899999999999999998753 3599999999999999999999974 578999
Q ss_pred EEEecCCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 110 IMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~G-A~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
|++|+..+.+...++++.| +++||.||++.++|..+++.++++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 80 LMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999987643
No 74
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.77 E-value=1.8e-18 Score=153.93 Aligned_cols=121 Identities=25% Similarity=0.391 Sum_probs=112.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~~iP 108 (636)
.+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 5689999999999999999999999999999999999999998765 999999999999999999999975 46789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 9999999988888899999999999999999999999999987653
No 75
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.77 E-value=4.9e-18 Score=151.43 Aligned_cols=119 Identities=24% Similarity=0.365 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+ ||+++|+++++.|+. .+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 4679999999999999999999999999999999999999998754 99999999 999999999999975 4679999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998754
No 76
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.76 E-value=3.9e-19 Score=173.40 Aligned_cols=165 Identities=22% Similarity=0.251 Sum_probs=132.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~g-y~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
+++||||||++..+..++.+|...+ |.+ ..+.++.+|++.+.... ||+||+|+.||++||+++++.|+. .+.+||
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 78 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRC 78 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 3799999999999999999999886 885 47999999999998765 999999999999999999999975 578999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccccc--CCc-----ccccccCCCchhHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS--GSL-----EETDHHKRGSDEIEYA 182 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~~s--~sl-----e~~~~~klt~rEie~l 182 (636)
|++|+..+.+...++++.||++||.||++.++|..+++.++++........... ... .......++.+|.+++
T Consensus 79 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 158 (225)
T 3c3w_A 79 LILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLL 158 (225)
T ss_dssp EEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999988654322110000 000 0012345788999999
Q ss_pred HhhccCCcceeehhhhc
Q 006661 183 SSVNEGTEGTFKAQRKR 199 (636)
Q Consensus 183 ssv~eG~e~~~ka~~k~ 199 (636)
..+.+|.....++....
T Consensus 159 ~~l~~g~s~~eIa~~l~ 175 (225)
T 3c3w_A 159 GLLSEGLTNKQIADRMF 175 (225)
T ss_dssp HHHHTTCCHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHhC
Confidence 98888865554444433
No 77
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.76 E-value=3.9e-19 Score=172.76 Aligned_cols=168 Identities=10% Similarity=0.012 Sum_probs=128.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTT-CSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~-~gy~V~t-asdg~eALe-~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~ 106 (636)
..++|||||||+..+..++.+|.. .+|.|.. +.++.+++. .+.... ||+||+|++||++||++++++|+. .++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRS--IQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGG--CCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccC--CCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 468999999999999999999994 5888854 456666665 355444 999999999999999999999976 678
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc---------ccCCcccccccCCCch
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---------NSGSLEETDHHKRGSD 177 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~~~ke~~---------~s~sle~~~~~klt~r 177 (636)
+|||++|++.+.+....+++.||++||.||++.++|..+++.++++......... ............++.+
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~r 163 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKR 163 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCHH
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCHH
Confidence 9999999999998999999999999999999999999999999876433221100 0000011123457889
Q ss_pred hHHHHHhhccCCcceeehhhhccc
Q 006661 178 EIEYASSVNEGTEGTFKAQRKRIS 201 (636)
Q Consensus 178 Eie~lssv~eG~e~~~ka~~k~Is 201 (636)
|.+++..+.+|.....++....++
T Consensus 164 E~~vL~~l~~g~s~~~Ia~~l~~s 187 (225)
T 3klo_A 164 EQQIIKLLGSGASNIEIADKLFVS 187 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC
Confidence 999999888876554444444333
No 78
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.76 E-value=9.7e-18 Score=148.49 Aligned_cols=119 Identities=27% Similarity=0.442 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhc-cCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGL-EMD 106 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MP-----dmDG~ELLk~Ir~-~~~ 106 (636)
+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.|| +++|+++++.|+. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 579999999999999999999999999999999999999998865 99999999999 9999999999975 468
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988654
No 79
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.76 E-value=5.1e-18 Score=150.57 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=105.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC----C
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM----D 106 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~----~ 106 (636)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.++.. +|+||+|+.||+++|+++++.|+. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999999999999999999999987532 499999999999999999999963 22 3
Q ss_pred C-cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 107 L-PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 107 i-PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
. +||++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 3 578899999999999999999999999999999999999887643
No 80
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.76 E-value=1.2e-17 Score=151.45 Aligned_cols=120 Identities=24% Similarity=0.441 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 4689999999999999999999999999999999999999998755 999999999999999999999975 4689999
Q ss_pred EEecCCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~G-A~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|+..+.+...++++.| |++||.||++.++|..++++++++.
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999999999998754
No 81
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.76 E-value=3.3e-18 Score=181.80 Aligned_cols=118 Identities=31% Similarity=0.444 Sum_probs=111.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
.||||||||+..+..++.+|...+|.|..+.++.+|++.++... ||+||+|++||+|||++++++|+. .+.+|||++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 37999999999999999999999999999999999999998876 999999999999999999999974 578999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|++.+.+.+.+|++.||+|||.||++.++|..++++++.+.
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
No 82
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.76 E-value=5.8e-18 Score=145.61 Aligned_cols=113 Identities=25% Similarity=0.406 Sum_probs=103.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
++||||||++..+..++..|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999999975 467999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
|+..+.. .++++.||++||.||++.++|...+++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9987665 67889999999999999999999887753
No 83
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.75 E-value=1.7e-17 Score=147.76 Aligned_cols=120 Identities=20% Similarity=0.311 Sum_probs=108.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHc----CCCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER----KGCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre~----k~~pDLVIlDI~MPdmDG~ELLk~Ir~~- 104 (636)
..++||||||++..+..++.+|...++ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.|+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 457899999999999999999999888 899999999999999861 1349999999999999999999999764
Q ss_pred --CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 105 --~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
+.+|||++|...+.+...++++.|+++||.||++.++|..++.+...
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988776543
No 84
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.75 E-value=4.2e-18 Score=153.31 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=101.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRR--CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~--~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
+++||||||++..++.++.+|.+ .+|.+. .+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ 79 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKLYPDCS 79 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Confidence 36899999999999999999974 578776 9999999999987654 999999999999999999999975 46899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 80 VIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999998888899999999999999999999999999988654
No 85
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.75 E-value=5.7e-18 Score=178.88 Aligned_cols=119 Identities=28% Similarity=0.510 Sum_probs=108.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
.++||||||++..+..++.+|++.+|.|..+.++.+|++.++... |||||+|++||+|||++++++|+. .+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 579999999999999999999999999999999999999998765 999999999999999999999975 46899999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi-~~eeLk~~Iq~vlrkk 153 (636)
+|++.+.+.+.++++.||++||.||+ ..++|..++++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6899999998887653
No 86
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.75 E-value=1.9e-17 Score=150.44 Aligned_cols=120 Identities=30% Similarity=0.506 Sum_probs=110.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVI 110 (636)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF--AGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 3579999999999999999999999999999999999999887654 999999999999999999999975 4689999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|+..+.+...++++.|+++||.||++.++|..+++++++++
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 87
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.74 E-value=1.5e-17 Score=143.81 Aligned_cols=115 Identities=17% Similarity=0.340 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhcc---CCCcE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLE---MDLPV 109 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MP-dmDG~ELLk~Ir~~---~~iPV 109 (636)
++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.|| +++|+++++.++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 58999999999999999999999999999999999999998866 99999999999 99999999999754 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|++ +..+.+...++++.|+++|+.||++.++|...++++++
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 999 88888889999999999999999999999999988764
No 88
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.74 E-value=2e-17 Score=149.93 Aligned_cols=120 Identities=21% Similarity=0.352 Sum_probs=110.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
.+++||||||++..+..++.+|.. .+|.+. .+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCe
Confidence 357999999999999999999998 699988 8999999999998765 999999999999999999999975 46899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
||++|...+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999887654
No 89
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.74 E-value=3.6e-17 Score=145.91 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=106.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
.+||||||++..+..++.+|... |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|+|++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 37999999999999999999875 99999999999999998765 999999999999999999999975 467899999
Q ss_pred ecCCCHHHHHHHHHc-CCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~-GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|+..+.....+++.. ||++||.||++.++|..+++++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999988888899876 59999999999999999999887643
No 90
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.73 E-value=1.1e-17 Score=150.33 Aligned_cols=116 Identities=23% Similarity=0.310 Sum_probs=96.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
.+...+||||||++..+..++.+|+.. +|.++ .+.++.+|++.+.... .||+||+|+.||+++|++++++|+.....
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 345678999999999999999999988 88865 8999999999998761 39999999999999999999999876668
Q ss_pred cEEEEec--CCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006661 108 PVIMMSA--DGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (636)
Q Consensus 108 PVIILSa--~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~I 146 (636)
|+|+++. ..+.+.+.++++.||++||.||++.++|...+
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 9999987 66677788999999999999999976665443
No 91
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.73 E-value=2.9e-17 Score=176.07 Aligned_cols=118 Identities=32% Similarity=0.499 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPVI 110 (636)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|++||+|||+++++.|+.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 48999999999999999999999999999999999999998765 9999999999999999999999753 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|++.+.+.+.++++.||++||.||++.++|...++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887643
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.73 E-value=3.6e-17 Score=174.71 Aligned_cols=118 Identities=29% Similarity=0.515 Sum_probs=110.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIIL 112 (636)
|+|||||||+..+..++.+|...+|.|..+.++.+|++.++... ||+||+|++||++||++++++|+. .+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999988999999999999999998765 999999999999999999999974 578999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|++.+.+.+.++++.||+|||.||++.++|..+++++++.+
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988643
No 93
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=7.1e-17 Score=143.37 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=107.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-C
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-D 106 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~-~ 106 (636)
.....+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ .
T Consensus 13 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~ 86 (137)
T 2pln_A 13 LVPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSS 86 (137)
T ss_dssp --CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTT
T ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCC
Confidence 33456789999999999999999999999999999999999999998765 99999 89999999999997557 8
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRK 152 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi-~~eeLk~~Iq~vlrk 152 (636)
+|||++|+..+.+...++++.||++||.||+ +.++|..++++++++
T Consensus 87 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 87 IVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 999999999887654
No 94
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.73 E-value=4.6e-17 Score=150.65 Aligned_cols=118 Identities=27% Similarity=0.367 Sum_probs=100.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~g-y~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
..+++||||||++..+..++.+|...+ +. |..+.++.+|++.++... ||+||+|+.||+++|+++++.|+....+|
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTR 100 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCE
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCce
Confidence 456899999999999999999999874 33 458999999999998876 99999999999999999999998655599
Q ss_pred EEEEecCCCHH--HHHHHHHcCCCeEEeCCCC---------HHHHHHHHHHHH
Q 006661 109 VIMMSADGRVS--AVMRGIRHGACDYLIKPIR---------EEELKNIWQHVV 150 (636)
Q Consensus 109 VIILSa~~d~e--~v~kAle~GA~DYLlKPi~---------~eeLk~~Iq~vl 150 (636)
||++|+..+.. .+.++++.||++||.||++ .++|...+++++
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~ 153 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAM 153 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHT
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHh
Confidence 99999977654 6779999999999999999 455555555544
No 95
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.72 E-value=1.2e-16 Score=142.48 Aligned_cols=119 Identities=19% Similarity=0.372 Sum_probs=104.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~-~iP 108 (636)
..++||||||++..+..++.+|... ++.+ ..+.++.+|++.++... ||+||+|+.||+++|+++++.|+... ..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 4589999999999999999999986 7884 58999999999998765 99999999999999999999997654 566
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
||++|+..+ ...++++.||++||.||++.++|..+++++++...
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 888888744 57789999999999999999999999999887653
No 96
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.72 E-value=2.6e-17 Score=148.98 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=99.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy-~V~tasdg~eALe~Lre-~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
.++||||||++..+..++.+|... ++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999987 77 68899999999999987 54 999999999999999999999975 46899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~ 154 (636)
||++|+..+.+...++++.|+++||.||++.++|..++++++++..
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 9999999998999999999999999999999999999999887653
No 97
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.72 E-value=2.5e-17 Score=147.13 Aligned_cols=116 Identities=24% Similarity=0.442 Sum_probs=102.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc------cCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL------EMD 106 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~------~~~ 106 (636)
.++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 369999999999999999999998999999999999999998765 999999999999999999999975 267
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|||++|+........ +.||++||.||++.++|..++++++++.
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 8999999876554332 7899999999999999999999887543
No 98
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.72 E-value=1.3e-16 Score=139.78 Aligned_cols=119 Identities=21% Similarity=0.360 Sum_probs=107.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~Ir~-~~~iPV 109 (636)
.+++||||||++..+..++..|...+|.|..+.++.+|++.++.. ..||+||+|+.||+ ++|++++++++. .+.+||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 357999999999999999999999999999999999999999875 13999999999998 999999999975 468999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
|++|+..+.+...+++..| +||.||++.++|..+++++++..
T Consensus 83 i~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 9999999988888887776 79999999999999999988654
No 99
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.72 E-value=3.3e-17 Score=139.09 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=103.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iPV 109 (636)
+.+||||||++..+..++.+|...+|.|..+.++.++++.++... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 368999999999999999999999999999999999999998875 9999999999999999999999754 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
|++|...+.. ++++.|+++|+.||++.++|...+++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999988776 8999999999999999999998887653
No 100
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.71 E-value=2.9e-17 Score=158.47 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=121.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~-~iPVIIL 112 (636)
|+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ ++|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 58999999999999999999999999999999999999997654 99999 99999999999997556 8999999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh--hcccc-cc--cccCC-c-ccccccCCCchhHHHHHh
Q 006661 113 SADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR--WNENK-EH--ENSGS-L-EETDHHKRGSDEIEYASS 184 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DYLlKPi-~~eeLk~~Iq~vlrkk--~~~~k-e~--~~s~s-l-e~~~~~klt~rEie~lss 184 (636)
|+..+.+...++++.||++||.||+ +.++|..++++++++. ..... .. ..... . .......++.+|.+++..
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~ 154 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTH 154 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHH
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEecCHHHHHHHHH
Confidence 9999999999999999999999999 9999999999988754 11100 00 00000 0 011123478889898888
Q ss_pred hccCC
Q 006661 185 VNEGT 189 (636)
Q Consensus 185 v~eG~ 189 (636)
+.++.
T Consensus 155 l~~~~ 159 (223)
T 2hqr_A 155 LARHR 159 (223)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 77763
No 101
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.71 E-value=5.3e-17 Score=167.75 Aligned_cols=117 Identities=27% Similarity=0.365 Sum_probs=107.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~-~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iP 108 (636)
..+||||||++..+..++.+|.+ .+|.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+.. +.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 35799999999999999999974 5899999999999999998865 9999999999999999999999753 5799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
||++|++.+.+.+.++++.||++||.||++.++|..+++.+.+
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887754
No 102
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.70 E-value=3.7e-17 Score=143.50 Aligned_cols=117 Identities=22% Similarity=0.351 Sum_probs=105.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
+++||||||++..+..++.+|...++.|..+.+++++++.+.. . ||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999987653 3 999999999999999999999974 46799999
Q ss_pred EecCCCH-----HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 112 MSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 112 LSa~~d~-----e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+|+..+. +...++++.||++||.||++.++|..+++++..+
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 9999875 6777899999999999999999999999987654
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.68 E-value=5.9e-17 Score=153.60 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=104.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iPVI 110 (636)
.+++||||||++..+..++.+|...+|.|..+.++.+|+ . ..||+||+|+.||++||+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999998899999888887776 2 349999999999999999 88888766 789999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|++.+.+.+.++++.||++||.||++.++|...++.++++.
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.68 E-value=6.6e-17 Score=143.76 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=101.6
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhc-c
Q 006661 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-E 104 (636)
Q Consensus 27 ~d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre-~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~ 104 (636)
....+.+.+||||||++..+..++.+|...+|.|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+. .
T Consensus 9 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 9 HHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp -----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSS
T ss_pred ccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 3445678999999999999999999999999999999999999999877 55 999999999999999999999975 4
Q ss_pred CCCcEEEEe-cCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 105 MDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 105 ~~iPVIILS-a~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
+.+|||++| +..+... .+++ +++||.||++.++|...++++++
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 579999999 8877666 6666 99999999999999999987654
No 105
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.68 E-value=1.1e-16 Score=170.38 Aligned_cols=120 Identities=23% Similarity=0.315 Sum_probs=105.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~-~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~-~iPVI 110 (636)
.+||||||||+..+..++.+|+. .+|.|..+.++.+|++.++.. ..||+||+|++||+|||++++++++... ..+||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 47999999999999999999998 578999999999999999873 1399999999999999999999997544 45667
Q ss_pred EEecCCCH-----HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 111 MMSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 111 ILSa~~d~-----e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
++|+..+. ..+.++++.||++||.||++.++|..++++++++.
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 77777666 66788999999999999999999999999988754
No 106
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.65 E-value=4.1e-18 Score=147.18 Aligned_cols=119 Identities=34% Similarity=0.469 Sum_probs=108.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVII 111 (636)
..+|||+||++..+..++.+|...+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEE
Confidence 35799999999999999999998899999999999999988754 4999999999999999999999974 46799999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|+..+.+...++++.||++|+.||++.++|...++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 999998888889999999999999999999999999887653
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.62 E-value=3.4e-15 Score=157.82 Aligned_cols=118 Identities=30% Similarity=0.442 Sum_probs=104.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
++|||||||++..++.++.+|... +|+ |..+.++.+|++.++... ||+||+|++||++||++++++|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 888 569999999999998876 9999999999999999999999765559999
Q ss_pred EEecCCCH--HHHHHHHHcCCCeEEeCCCCH---------HHHHHHHHHHHHH
Q 006661 111 MMSADGRV--SAVMRGIRHGACDYLIKPIRE---------EELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~--e~v~kAle~GA~DYLlKPi~~---------eeLk~~Iq~vlrk 152 (636)
++|+..+. +...++++.||+|||.||++. ++|...++++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99998875 458899999999999999983 7777777776653
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.59 E-value=1.5e-15 Score=152.54 Aligned_cols=104 Identities=21% Similarity=0.296 Sum_probs=87.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~-gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
..|||||||++..++.++..|... +|.|..+ ++.+++..+.. ..||+||+|++||++||++++++++. ..+|||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~-~~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLE-RGLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHH-TTCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHh-CCCCEEE
Confidence 358999999999999999999764 7777544 55566555443 35999999999999999999999976 4699999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006661 112 MSADGRVSAVMRGIRHGACDYLIKPIREE 140 (636)
Q Consensus 112 LSa~~d~e~v~kAle~GA~DYLlKPi~~e 140 (636)
+|++.+.+...+|++.||+|||.||+...
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 99999999999999999999999996543
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.53 E-value=8.7e-15 Score=168.97 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=108.3
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC----CCHHHHHHHH
Q 006661 34 LRVLVVDDDI-TC-------LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD----MDGFKLLEHI 101 (636)
Q Consensus 34 lRVLIVDDD~-~~-------re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPd----mDG~ELLk~I 101 (636)
|||||||||. .. ++.|+..|++.||+|..+.++++|+..++.. ..+|+||+|++||+ +||++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5899999999 88 9999999999999999999999999998764 24999999999999 9999999999
Q ss_pred hcc-CCCcEEEEecCCC-HHHHHHHHHcCCCeEEeCCCCHHH-HHHHHHHHHHHh
Q 006661 102 GLE-MDLPVIMMSADGR-VSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVRKR 153 (636)
Q Consensus 102 r~~-~~iPVIILSa~~d-~e~v~kAle~GA~DYLlKPi~~ee-Lk~~Iq~vlrkk 153 (636)
|+. .++|||++|+..+ .+....++..||+||+.||++..| |...++.++|+.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 864 5899999999887 778889999999999999999999 888888888764
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.94 E-value=1.8e-08 Score=107.87 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=100.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~---~~iP 108 (636)
.+.+|+++||+...+..+...|.. .+.+....++.+++. .... .||+|++|+.||+|||+++++.++.. ..+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 346899999999988888888865 467778888888863 3333 48999999999999999999999743 4789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+|++|+..+.+...++++.|++||+.||+..+++...+..+++.+
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887776543
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.94 E-value=6.8e-10 Score=106.86 Aligned_cols=92 Identities=24% Similarity=0.407 Sum_probs=78.1
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 58 y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
+.|..+.++.+|++.++... ||+||+|++||+++|++++++|+. .+..++++++.....+.+.++++.||++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 45667889999999998876 999999999999999999999974 345677777777778889999999999999999
Q ss_pred --CCHHHHHHHHHHHHH
Q 006661 137 --IREEELKNIWQHVVR 151 (636)
Q Consensus 137 --i~~eeLk~~Iq~vlr 151 (636)
++..++...+.+.+.
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 777788777766654
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.07 E-value=0.00081 Score=66.66 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=72.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
...+.|||||||++..++.|..+|..+|++|..+.+. ....+|++|+|..+|...+. ..+
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~~-----------~~~ 67 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQG-----------RAV 67 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCCS-----------SEE
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCcccccc-----------ceE
Confidence 3567899999999999999999999999999887641 12358999999999876432 125
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|.++...... ....+...++.||+...++...+.+++.
T Consensus 68 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 68 VTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 5555543210 1123456789999999888888777653
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.45 E-value=0.0032 Score=72.63 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHH
Q 006661 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMR 123 (636)
Q Consensus 45 ~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPVIILSa~~d~e~v~k 123 (636)
..+.|...|++.||+|..+.+.++|+..++.+ ..+++||+|++++ +.+++++|+. ..++||++++.......+.-
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 34566688888899999999999999999876 3689999999886 7889999974 57999999998865433222
Q ss_pred HHHcCCCeEEeCCCC-HHHHHHHHHHHHHH
Q 006661 124 GIRHGACDYLIKPIR-EEELKNIWQHVVRK 152 (636)
Q Consensus 124 Ale~GA~DYLlKPi~-~eeLk~~Iq~vlrk 152 (636)
....++++|+.+..+ .+.+...+.+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 124578899998864 55555555555443
No 114
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.76 E-value=0.038 Score=49.09 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=77.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCC-CCCCHHHHHHHHhc---cCCCcEE
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGL---EMDLPVI 110 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~M-PdmDG~ELLk~Ir~---~~~iPVI 110 (636)
.||+|-.|-...-.+++++....|.++....... .-..|+|+|++.+ |. .|.. ....-+|
T Consensus 14 ~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dli 77 (121)
T 3q7r_A 14 HVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR--------EIRSPKSLEGSFVL 77 (121)
T ss_dssp EEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT--------TCCCCTTCCSCEEE
T ss_pred EEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH--------HhcCCCCCCcccEE
Confidence 5788888888888899999777899887654322 1236999999854 32 1211 1234578
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
++-..-+++.+.+.+..||. ||+.|++..-|.++|+..+|.
T Consensus 78 VLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 78 VLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 88888899999999999999 999999999999999988875
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.55 E-value=0.064 Score=50.88 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEeC-CCCCCCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE------eC
Q 006661 65 QAAVALDILRERKGCFDVVLSDV-HMPDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IK 135 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI-~MPdmDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL------lK 135 (636)
+..+.++.+.... ..+++++++ .++.++| .+++++++...++|||.+++..+.+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666665542 357999997 6666777 456777776678999999999999999999999999985 67
Q ss_pred CCCHHHHHHHH
Q 006661 136 PIREEELKNIW 146 (636)
Q Consensus 136 Pi~~eeLk~~I 146 (636)
|++..+++..+
T Consensus 210 ~~~~~~~~~~l 220 (237)
T 3cwo_X 210 EIDVRELKEYL 220 (237)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88888887654
No 116
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.63 E-value=0.62 Score=43.69 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=82.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006661 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (636)
Q Consensus 32 ~glRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd-mD-G~ELLk~Ir 102 (636)
...||++. |-+..-...+..+|+..||+|.. ....++.++.+++.. +|+|.+-..+.. +. --++++.|+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHH
Confidence 45688888 88899999999999999999974 457788888888766 999998876653 22 233555565
Q ss_pred cc--CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 103 LE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 103 ~~--~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+. .+++|++ .+..-......+.+.|++.++..--+..+....++.++.++
T Consensus 95 ~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 3566555 44444444445668999876655456667777777766543
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=89.84 E-value=1.5 Score=43.48 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=68.9
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 006661 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (636)
Q Consensus 33 glRVLIVDD----D~~~re~L~~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~------MPdmDG~ELLk~I 101 (636)
|..++++|- ++.....+.+.+++.+..+ ..+.+.+++..+.+. .+|+|.+..+ .+...++++++++
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 555666553 2333344444455556554 467888888776653 3898865322 2234568999999
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 102 r~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+.. ++|||.-..-.+.+.+.++++.||+..++=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 765 899999998889999999999999998874
No 118
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.21 E-value=3.3 Score=43.27 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=75.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~---gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
..+|++|+|.|+...+.|..+|... .|+|..+++.+.+.+.+++.+ +|++|+|-.+.... .......+
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-------~~~~~~~~ 90 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-------SEFKRNCG 90 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-------GGGCSSCE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-------hhhcccCc
Confidence 3589999999999999999999764 578999999999999998875 99999997775421 11123356
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
+++++.....+ ...-...+.|--+.+++...+..++.
T Consensus 91 v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~~ 127 (373)
T 3fkq_A 91 LAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVYS 127 (373)
T ss_dssp EEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHHh
Confidence 77776543221 11122468888888888766666553
No 119
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=88.94 E-value=2.2 Score=43.64 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=75.3
Q ss_pred ccEEEEE-------eCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHH
Q 006661 33 GLRVLVV-------DDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLL 98 (636)
Q Consensus 33 glRVLIV-------DDD~~~re~L~~lL~~~gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MPd-----mDG~ELL 98 (636)
.+|+=|+ .|.....+.. +.|.+.||.|. +..+...|-+ +.+.. +++| +.+-.|- ..-++++
T Consensus 105 ~iKlEv~~d~~~llpD~~~tv~aa-~~L~~~Gf~Vlpy~~dd~~~akr-l~~~G--~~aV-mPlg~pIGsG~Gi~~~~lI 179 (265)
T 1wv2_A 105 LVKLEVLADQKTLFPNVVETLKAA-EQLVKDGFDVMVYTSDDPIIARQ-LAEIG--CIAV-MPLAGLIGSGLGICNPYNL 179 (265)
T ss_dssp EEEECCBSCTTTCCBCHHHHHHHH-HHHHTTTCEEEEEECSCHHHHHH-HHHSC--CSEE-EECSSSTTCCCCCSCHHHH
T ss_pred eEEEEeecCccccCcCHHHHHHHH-HHHHHCCCEEEEEeCCCHHHHHH-HHHhC--CCEE-EeCCccCCCCCCcCCHHHH
Confidence 4566555 3333444444 34445699887 4455555544 44443 7877 5544432 2237899
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHH
Q 006661 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (636)
Q Consensus 99 k~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK-----Pi~~eeLk~~Iq~vlr 151 (636)
+.|++..++|||.=..-...+.+.+++++||+..++= --++..+...+..++.
T Consensus 180 ~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 180 RIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 9998878999999778889999999999999998754 3446666666666553
No 120
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=87.23 E-value=2.7 Score=41.68 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=67.8
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 006661 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (636)
Q Consensus 33 glRVLIVDD----D~~~re~L~~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~------MPdmDG~ELLk~I 101 (636)
|..+++++- ++.....+.+.+++.+..+ ..+.+.+++..+.+. .+|+|.+..+ .+...++++++++
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 455556543 2333344444455556554 467788888776653 3898864322 1233468999998
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 102 r~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+.. ++|||.-..-.+.+.+.++++.||+..++=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 766 899999988889999999999999998764
No 121
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=85.85 E-value=19 Score=32.51 Aligned_cols=107 Identities=13% Similarity=0.000 Sum_probs=71.0
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc-C-CCcEEEE
Q 006661 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-M-DLPVIMM 112 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~---tasdg~eALe~Lre~k~~pDLVIlDI~MPd-mD-G~ELLk~Ir~~-~-~iPVIIL 112 (636)
|-|..-...+..+|+..||+|. .....++.++.+++.. +|+|.+-..+.. +. --++++.+++. . +++|++=
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEE
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 5667778889999999999987 5678899999998876 999999877643 11 22345555432 2 5666543
Q ss_pred ec----CCCHHH-HHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006661 113 SA----DGRVSA-VMRGIRHGACDYLIKPIREEELKNIWQH 148 (636)
Q Consensus 113 Sa----~~d~e~-v~kAle~GA~DYLlKPi~~eeLk~~Iq~ 148 (636)
-. ..+... ...+.+.|++.|+.---+..++...+..
T Consensus 92 G~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 92 GNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp ESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred CCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 32 123322 4457789998887665666666555443
No 122
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=81.82 E-value=14 Score=36.77 Aligned_cols=112 Identities=15% Similarity=0.082 Sum_probs=75.6
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHH
Q 006661 31 PAGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHI 101 (636)
Q Consensus 31 P~glRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG-~ELLk~I 101 (636)
..+-+||++ |-|..-...+..+|+..||+|.. -...++.++.+++.+ ||+|.+-..++. +.. -++++.+
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l 198 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDML 198 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHH
Confidence 345678887 77788899999999999999853 346777778888776 999999887653 443 3466777
Q ss_pred hc-cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006661 102 GL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 102 r~-~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
++ ..++||++--.....++. -+.||+.|.... .+....++.++
T Consensus 199 ~~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 199 LENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp HTTTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred HhcCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 54 356777765554454432 377987665533 44444444444
No 123
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=80.16 E-value=20 Score=36.75 Aligned_cols=125 Identities=9% Similarity=0.108 Sum_probs=82.9
Q ss_pred CCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-cc
Q 006661 26 VPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LE 104 (636)
Q Consensus 26 ~~d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir-~~ 104 (636)
|.|-+...+.|-+.-.++.....+..+|....|.+..+...++.++.++.+++.+|++|+..- +.+-..+..++. ..
T Consensus 2 ~~~~~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g 79 (289)
T 1r8j_A 2 MADIVLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEG 79 (289)
T ss_dssp ----CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTT
T ss_pred cccccccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcC
Confidence 345567788899999999999999999988889999999999999999998889999998751 224566777775 34
Q ss_pred CCCcEEEEecCCCHHHHHH---HHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 105 MDLPVIMMSADGRVSAVMR---GIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~k---Ale~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
.-+|+|++........ .+ .+.....+.-...-..+++-..+..++.+-
T Consensus 80 ~lLP~vil~~~~~~~~-~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 80 VVVPAIVVGDRDSEDP-DEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp CCCCEEEESCCC-------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred ccccEEEeccCccccC-CCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 5689998865422000 00 011111222233345566766666666543
No 124
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=78.95 E-value=8.4 Score=36.92 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=68.4
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHh
Q 006661 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIG 102 (636)
Q Consensus 32 ~glRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIlDI~MPd-mDG-~ELLk~Ir 102 (636)
.+-+|+++ |-|..-...+..+|+..||+|... ...++.++.+++.+ ||+|.+-..++. ++. -++++.++
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~ 164 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALI 164 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHH
Confidence 34578888 788899999999999999999853 35677777887766 999999887653 332 34566665
Q ss_pred cc---CCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 103 LE---MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 103 ~~---~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.. +++||++--...+.+.. -+.||+.|..
T Consensus 165 ~~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 165 AAGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp HTTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred hcCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 43 34777765555554433 4568887654
No 125
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=78.74 E-value=6.3 Score=40.36 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=69.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-----HHHHHHHhc-cCC-CcEE
Q 006661 40 DDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLLEHIGL-EMD-LPVI 110 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG-----~ELLk~Ir~-~~~-iPVI 110 (636)
-|.....+..+.+. +.||.|. +..|...| +.+.+.. +++| +.+-.|-..| .++++.+++ ..+ +|||
T Consensus 108 pD~~~tv~aa~~L~-k~Gf~Vlpy~~~D~~~a-k~l~~~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI 182 (268)
T 2htm_A 108 PDPLETLKAAERLI-EEDFLVLPYMGPDLVLA-KRLAALG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVV 182 (268)
T ss_dssp CCHHHHHHHHHHHH-HTTCEECCEECSCHHHH-HHHHHHT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBE
T ss_pred cCHHHHHHHHHHHH-HCCCEEeeccCCCHHHH-HHHHhcC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEE
Confidence 33344444555544 4488876 34566444 4444443 6766 6654442222 567888876 677 9999
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLl-----KPi~~eeLk~~Iq~vlr 151 (636)
+=..-.+.+.+..++++||+..++ |.-++..+...+..++.
T Consensus 183 ~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 183 VDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp EESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 988888999999999999999875 44456666666666553
No 126
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=77.71 E-value=7.7 Score=37.91 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=69.0
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEE--eCCCC-CCC-HHHHHH
Q 006661 31 PAGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLS--DVHMP-DMD-GFKLLE 99 (636)
Q Consensus 31 P~glRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIl--DI~MP-dmD-G~ELLk 99 (636)
+.+-||++. |-|..=...+..+|+..||+|+.. ...++.++.+++.+ ||+|.+ -..|. .++ --++++
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~ 167 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMD 167 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHH
Confidence 345678887 778888999999999999998753 46777888888876 999999 77664 233 234566
Q ss_pred HHhcc-C--CCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 100 HIGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 100 ~Ir~~-~--~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.+++. . ++||++--+--..+++ -+.||+.|-..
T Consensus 168 ~l~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~d 203 (215)
T 3ezx_A 168 RLNEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAEN 203 (215)
T ss_dssp HHHHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCSS
T ss_pred HHHHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEECC
Confidence 66543 2 5777665554554433 35699888653
No 127
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=76.08 E-value=28 Score=30.50 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=34.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHc
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER 76 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~ 76 (636)
-|++..-|...+..++.++++.||.|.++.++.+.-+.+++.
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieel 45 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEEL 45 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHH
Confidence 345556778888899999999999999999999888777764
No 128
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=74.82 E-value=7 Score=38.09 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d------~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq 147 (636)
++++++.+++..++||++++.... .+.+..+++.||+..++-....++....++
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 377888888767889998874333 567888999999999886666665544433
No 129
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=74.43 E-value=33 Score=34.69 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeC---CCCCCCHHHHHHHHhcc-C-CCcEEEEecCC
Q 006661 43 ITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV---HMPDMDGFKLLEHIGLE-M-DLPVIMMSADG 116 (636)
Q Consensus 43 ~~~re~L~~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI---~MPdmDG~ELLk~Ir~~-~-~iPVIILSa~~ 116 (636)
......+.....+.|..+ ..+.+.+++...+.. . +|+|-+.- ..... +++.++++... + ++|+|..++-.
T Consensus 148 ~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~-G--ad~IGv~~r~l~~~~~-dl~~~~~l~~~v~~~~pvVaegGI~ 223 (272)
T 3qja_A 148 QSVLVSMLDRTESLGMTALVEVHTEQEADRALKA-G--AKVIGVNARDLMTLDV-DRDCFARIAPGLPSSVIRIAESGVR 223 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T--CSEEEEESBCTTTCCB-CTTHHHHHGGGSCTTSEEEEESCCC
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC-C--CCEEEECCCccccccc-CHHHHHHHHHhCcccCEEEEECCCC
Confidence 333444555556667765 467888887666643 3 78877752 11122 35666676543 3 68999998888
Q ss_pred CHHHHHHHHHcCCCeEEeC
Q 006661 117 RVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 117 d~e~v~kAle~GA~DYLlK 135 (636)
+.+.+.++.++||+++++=
T Consensus 224 t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 224 GTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp SHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHcCCCEEEEc
Confidence 8999999999999999874
No 130
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=74.17 E-value=8.2 Score=38.67 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=53.9
Q ss_pred HHHHHHHHHc-CCCceEEEEeCCCCC--CC--------------------HHHHHHHHhccC-CCcEEEEecCCC-----
Q 006661 67 AVALDILRER-KGCFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEM-DLPVIMMSADGR----- 117 (636)
Q Consensus 67 ~eALe~Lre~-k~~pDLVIlDI~MPd--mD--------------------G~ELLk~Ir~~~-~iPVIILSa~~d----- 117 (636)
++.++.++.. ....|+|.+++-..+ .| .+++++.++... ++|+++|+-...
T Consensus 31 ~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g 110 (262)
T 2ekc_A 31 ETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIG 110 (262)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhh
Confidence 4444444321 124899888874432 23 346677777655 899999853321
Q ss_pred -HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 118 -VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 118 -~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
...+..+.++|+++++.-.+..+++...+..+
T Consensus 111 ~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 111 LEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 35567788999999999878888876655544
No 131
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=74.14 E-value=27 Score=40.68 Aligned_cols=119 Identities=10% Similarity=-0.012 Sum_probs=80.4
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006661 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (636)
Q Consensus 32 ~glRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIlDI~MPd-mD-G~ELLk~Ir 102 (636)
...||+|. |.|..-...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. +. .-++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHH
Confidence 34678776 666777788888999999999853 46788888888765 999888776642 22 344566665
Q ss_pred cc-C-CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 103 LE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 103 ~~-~-~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+. . +++ |++-+..-......+.+.|++.|+..--+..+....+.+.+.++
T Consensus 681 ~~G~~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 681 SLGRPDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp HTTCTTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 42 2 443 34443222223345678999999986668888877777776554
No 132
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.14 E-value=6.7 Score=31.89 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=37.7
Q ss_pred ceecHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHHHHHHH
Q 006661 223 VVWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASHLQKFR 272 (636)
Q Consensus 223 VvWt~ELH~kFv~AVnqLGidKAvP---KkILelMnVpgLTrenVASHLQKyR 272 (636)
-.||.|=+..|+++|...|.+...| ++|-++ +++-|..++..|-++|-
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE--LGNRTAKQVASQVQKYF 59 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3699999999999999999644222 567776 57899999999966554
No 133
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=73.54 E-value=20 Score=36.46 Aligned_cols=115 Identities=11% Similarity=0.069 Sum_probs=77.8
Q ss_pred CccEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC----
Q 006661 32 AGLRVLVV----DDDITCLRILEQM--------LRRC-LYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD---- 91 (636)
Q Consensus 32 ~glRVLIV----DDD~~~re~L~~l--------L~~~-gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd---- 91 (636)
...+|++. |-|..=...+..+ |+.. ||+|+. .-..++.++.+++.+ +|+|.+-.-|..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccch
Confidence 45677665 7778888888888 9999 999864 447788888888766 999999988875
Q ss_pred CCHH-HHHHHHhcc---CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 92 MDGF-KLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 92 mDG~-ELLk~Ir~~---~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
++.+ ++++.+++. .+++|++=-+..+.+ .+.+.||+.|..--....++...+...+.
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 2222 345555432 236665544433433 36678999888777777777665554443
No 134
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=73.45 E-value=22 Score=33.43 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=49.7
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPd-------mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+.+..++..... .. +|.|+++--.|. ..+++.+++++...++||++..+-. .+.+.++++.||+.+..
T Consensus 114 ~~~t~~e~~~~~~-~g--~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEK-KG--ADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHH-HT--CSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHh-cC--CCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 5677777765543 23 899998754442 3478888888765688988876655 67788888999998754
No 135
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=72.38 E-value=4.4 Score=34.50 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=36.2
Q ss_pred cceecHHHHHHHHHHHHHhccC---cc--c--------HHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHH
Q 006661 222 RVVWSVELHQQFVSAVNQLGID---KA--V--------PKRILELM---NVPGLTRENVASHLQKFRLYLKR 277 (636)
Q Consensus 222 RVvWt~ELH~kFv~AVnqLGid---KA--v--------PKkILelM---nVpgLTrenVASHLQKyRl~LKr 277 (636)
.-+|..+|.+.|++|+..+--. |. . -.-|-+++ --.--|+.+|+||||..+..+++
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 3489999999999999887422 11 0 01111111 11234679999999999887665
No 136
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=72.25 E-value=14 Score=42.41 Aligned_cols=116 Identities=11% Similarity=0.107 Sum_probs=77.4
Q ss_pred ccEEEEE----eCCHHHHHHH----HHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC----CCHH-H
Q 006661 33 GLRVLVV----DDDITCLRIL----EQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD----MDGF-K 96 (636)
Q Consensus 33 glRVLIV----DDD~~~re~L----~~lL~~~gy~V~t---asdg~eALe~Lre~k~~pDLVIlDI~MPd----mDG~-E 96 (636)
..||++. |-+..=...+ ..+|+..||+|+. ....++.++.+.+.. +|+|.+-.-|.. +..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 4688888 5565555433 5678888999974 447889999888876 999999988875 3333 3
Q ss_pred HHHHHhcc-C--CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006661 97 LLEHIGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (636)
Q Consensus 97 LLk~Ir~~-~--~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk 153 (636)
+++.+++. . +++||+=-+-.+.+. +-+.||+.|........++...|...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 55555532 2 355555333344433 348999999887777777776666555543
No 137
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=72.09 E-value=31 Score=36.58 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=67.9
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006661 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (636)
Q Consensus 32 ~glRVLIVD----DD~~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MPd------------m 92 (636)
.+..++++| +.+...+.++.+-+.. +..|. .+.+.++|..+.+.- .|.|.+-+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCccc
Confidence 356678775 3455566666666554 44443 588999998877653 798888421 11 2
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 93 DG~ELLk~Ir---~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..++++..+. ...++|||.--.-.+...+.+++.+||+...+=
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3455666553 245799998888888899999999999887653
No 138
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=71.54 E-value=8.8 Score=38.48 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=50.3
Q ss_pred CceEEEEeCCCC--CCC--------------------HHHHHHHHhcc-CCCcEEEEecCC------CHHHHHHHHHcCC
Q 006661 79 CFDVVLSDVHMP--DMD--------------------GFKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGA 129 (636)
Q Consensus 79 ~pDLVIlDI~MP--dmD--------------------G~ELLk~Ir~~-~~iPVIILSa~~------d~e~v~kAle~GA 129 (636)
..|+|-+|+-.. -+| ++++++.+++. .++||++|+-.. ....+..+.++|+
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 389999887442 234 34667778766 689999886322 2467788899999
Q ss_pred CeEEeCCCCHHHHHHHHHHH
Q 006661 130 CDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 130 ~DYLlKPi~~eeLk~~Iq~v 149 (636)
++++.-.+..+++...++.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99999878877766655544
No 139
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=71.15 E-value=43 Score=32.00 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=43.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEe
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSD 86 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlD 86 (636)
++...+|+++-..+...+.+++++.+...++. ...+.+++++..++....+|+||.-
T Consensus 1 m~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISR 58 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISR 58 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEE
T ss_pred CCCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEEC
Confidence 35567999999999999999998887665654 5567888998877643458998863
No 140
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=70.92 E-value=27 Score=40.49 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=79.0
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006661 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (636)
Q Consensus 32 ~glRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIlDI~MPd-mD-G~ELLk~Ir 102 (636)
...||++. |.|..-...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. +. .-++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHH
Confidence 34678777 667777788888999899999753 36788888888765 999988776642 22 344566665
Q ss_pred cc-C-CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 103 LE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 103 ~~-~-~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+. . +++ |++-+-.-......+.+.|++.|+.--.+..++...+...+++
T Consensus 673 ~~G~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 673 KLGRPDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HTTCTTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hcCCCCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 42 2 443 4444322233344567899999998666777777666665543
No 141
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=69.15 E-value=26 Score=37.64 Aligned_cols=100 Identities=14% Similarity=0.268 Sum_probs=65.8
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCC-----C------CCCCHH
Q 006661 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-----M------PDMDGF 95 (636)
Q Consensus 33 glRVLIVD----DD~~~re~L~~lL~~~gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~-----M------PdmDG~ 95 (636)
|..++++| +.....+.++.+-+..+..|. .+.+.++|..+++. ..|.|++-+. . .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 56677775 234445555555444455544 68888888877654 3798887321 0 012345
Q ss_pred HHHHHHhc---cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 96 KLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 96 ELLk~Ir~---~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+++..+.. ..++|||.-..-.+...+.+++.+||+...+=
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 66666632 35799998888888999999999999987653
No 142
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=68.51 E-value=8.9 Score=38.94 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=41.2
Q ss_pred HHHHHHHhcc-CCCcEEEEecCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 95 FKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 95 ~ELLk~Ir~~-~~iPVIILSa~~d------~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
+++++++|.. .++|+++|+-.+. ...+.++.++|+++.++-.+..+|.....+.+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 6677777765 7899999975332 55688889999999999878888766555443
No 143
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=67.16 E-value=20 Score=34.31 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=50.0
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPd-------mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+.+.+++.+.... ..|.|+++-..+. .-|++.++.++...++||+...+- +.+.+.++++.||+.+..
T Consensus 116 sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 116 SVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp EECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred EcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 66788887766543 3799998764332 236788888865568898887776 788889999999998654
No 144
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=66.63 E-value=70 Score=29.98 Aligned_cols=99 Identities=9% Similarity=-0.009 Sum_probs=58.9
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCeEEE----ECCHHHHHHHHHHcCCCceEEEEeCCCC----CCCHHHHHHHHh
Q 006661 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHMP----DMDGFKLLEHIG 102 (636)
Q Consensus 33 glRVLIVDDD~--~~re~L~~lL~~~gy~V~t----asdg~eALe~Lre~k~~pDLVIlDI~MP----dmDG~ELLk~Ir 102 (636)
|...+++-+.. .....+.+.+++.+..+.. ..+..+.++.+.+.. .|.|.++.... ...+++.+++++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 44455555543 3334555556665666543 234444444444443 78877763110 113577888887
Q ss_pred cc-CCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 103 LE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 103 ~~-~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+. .++||++-.+-. .+.+.++++.||+..+.
T Consensus 155 ~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 155 KVRRKARIAVAGGIS-SQTVKDYALLGPDVVIV 186 (211)
T ss_dssp HHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEE
T ss_pred HHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 65 478887765554 77788999999998765
No 145
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=65.32 E-value=16 Score=32.05 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=28.3
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH
Q 006661 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE 75 (636)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre 75 (636)
|+-|.|..-++.+++-++..||+|..+++.++||..+++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 344666666677777777778888888888888887765
No 146
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=64.75 E-value=42 Score=33.37 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=51.4
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MPd-------mDG~ELLk~Ir~~--~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
.|.+.+|+.+..+. .+|.|.+.--.|. .-|++.++++... .++|||.+.+- +.+.+.++++.||+.+
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 68888888776653 3899988553332 2378888888754 48999998876 5667889999999998
Q ss_pred Ee
Q 006661 133 LI 134 (636)
Q Consensus 133 Ll 134 (636)
.+
T Consensus 217 av 218 (243)
T 3o63_A 217 VV 218 (243)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 147
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=62.32 E-value=22 Score=35.57 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEE-eCCCC---CCCHHHHHHHHhccCCCcEEEEecCCC
Q 006661 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLS-DVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGR 117 (636)
Q Consensus 44 ~~re~L~~lL~~~gy~V~--tasdg~eALe~Lre~k~~pDLVIl-DI~MP---dmDG~ELLk~Ir~~~~iPVIILSa~~d 117 (636)
...+..++++.. +..+. .+.+.+++....+. . .|.|+. -...+ +..+.++++++++..++|||+..+-.+
T Consensus 114 ~~~~~a~~~~~~-g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t 189 (264)
T 1xm3_A 114 ETLKASEQLLEE-GFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGS 189 (264)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS
T ss_pred HHHHHHHHHHCC-CeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 444445554433 55554 45566665554433 3 576633 00001 123478888887777899999998888
Q ss_pred HHHHHHHHHcCCCeEEeC
Q 006661 118 VSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 118 ~e~v~kAle~GA~DYLlK 135 (636)
.+.+.++++.||+..++=
T Consensus 190 ~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 190 PKDAAYAMELGADGVLLN 207 (264)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999998764
No 148
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=62.31 E-value=37 Score=35.78 Aligned_cols=100 Identities=14% Similarity=0.263 Sum_probs=64.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCCHH
Q 006661 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDGF 95 (636)
Q Consensus 33 glRVLIVD----DD~~~re~L~~lL~~~gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MP-----------dmDG~ 95 (636)
+..++++| +.....+.++.+-+..+..|. .+.+.++|..+++. ..|.|.+-+.-. +...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 45566664 334455666665555455544 67888888776653 379888732110 12345
Q ss_pred HHHHHHh---ccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 96 KLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 96 ELLk~Ir---~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+++..+. ...++|||.--.-.+.+.+.+++.+||+...+=
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5555552 234789998877778899999999999987653
No 149
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=58.35 E-value=14 Score=37.49 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHc-CCCceEEEEeCCCCC--CC--------------------HHHHHHHHhccCCCcEEEEecCC-----
Q 006661 65 QAAVALDILRER-KGCFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEMDLPVIMMSADG----- 116 (636)
Q Consensus 65 dg~eALe~Lre~-k~~pDLVIlDI~MPd--mD--------------------G~ELLk~Ir~~~~iPVIILSa~~----- 116 (636)
+.+..++.++.. .. .|+|.+++-..+ .| .+++++.+|...++|||+|+-.+
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~ 106 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAW 106 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHh
Confidence 344455544432 23 798888864432 22 35677888766789999984222
Q ss_pred -CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 117 -RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 117 -d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
....+..+.+.|+++++.-.+..+++......+
T Consensus 107 g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 107 GPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp CHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 234566788999999999777777766555444
No 150
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=56.62 E-value=70 Score=30.82 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC------C
Q 006661 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK------P 136 (636)
Q Consensus 67 ~eALe~Lre~k~~pD-LVIlDI~MPd-mDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK------P 136 (636)
.+.++.+.+.. ++ ++++++.-.+ ..| ++++++++...++|||....-.+.+.+.++++.||+..++= |
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44445454433 56 5556654222 123 88999998767899999988888889999999999987653 5
Q ss_pred CCHHHHHHHH
Q 006661 137 IREEELKNIW 146 (636)
Q Consensus 137 i~~eeLk~~I 146 (636)
++.+++++.+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6666665543
No 151
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=56.56 E-value=42 Score=27.57 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=34.8
Q ss_pred cceecHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHHHH
Q 006661 222 RVVWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASHLQ 269 (636)
Q Consensus 222 RVvWt~ELH~kFv~AVnqLGidKAvP---KkILelMnVpgLTrenVASHLQ 269 (636)
+-.||.|=...|..|+...|.+ .| .+|.++ |||-|..++..|-+
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~--vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARC--VPSKSKEDCIARYK 64 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGG--CSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHH--cCCCCHHHHHHHHH
Confidence 3469999999999999999854 45 345555 78999999988844
No 152
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=56.08 E-value=18 Score=33.13 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=32.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~--gy~V~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
.|.||++||-|+. ..+..++... ++.+..+.. ....+.+......+|+||+|.
T Consensus 29 ~g~~vlliD~D~~--~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQ--MSLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTT--CHHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCCeEEEEECCCC--CCHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 4789999998853 2334444332 456665554 333444444444599999996
No 153
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=55.99 E-value=96 Score=31.53 Aligned_cols=80 Identities=23% Similarity=0.239 Sum_probs=56.0
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-------CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHH
Q 006661 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-------DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (636)
Q Consensus 53 L~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MP-------dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kA 124 (636)
+++.+..|. .+.+.+++...... ..|.|+++-.-+ ....++++++++...++|||+-..-.+.+.+.++
T Consensus 114 l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~a 190 (328)
T 2gjl_A 114 FRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAA 190 (328)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHH
T ss_pred HHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 333344443 46777777665543 379888853211 1256788888876678999998888888899999
Q ss_pred HHcCCCeEEeC
Q 006661 125 IRHGACDYLIK 135 (636)
Q Consensus 125 le~GA~DYLlK 135 (636)
+..||+....=
T Consensus 191 l~~GAdgV~vG 201 (328)
T 2gjl_A 191 LALGADAINMG 201 (328)
T ss_dssp HHHTCSEEEES
T ss_pred HHcCCCEEEEC
Confidence 99999987653
No 154
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=55.65 E-value=67 Score=32.99 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHH
Q 006661 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR 126 (636)
Q Consensus 53 L~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MP-----dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle 126 (636)
++..+..|. .+.+.++|..+.+. .+|.|+++-.-. ....++++..++...++|||+-.+-.+.+.+.+++.
T Consensus 120 l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~ 196 (326)
T 3bo9_A 120 LKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA 196 (326)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 334454443 56777777665543 378888854211 235678888887666899999888888999999999
Q ss_pred cCCCeEEeC
Q 006661 127 HGACDYLIK 135 (636)
Q Consensus 127 ~GA~DYLlK 135 (636)
.||+...+=
T Consensus 197 ~GA~gV~vG 205 (326)
T 3bo9_A 197 LGAEAVQMG 205 (326)
T ss_dssp HTCSEEEES
T ss_pred hCCCEEEec
Confidence 999987663
No 155
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=55.00 E-value=29 Score=27.95 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=37.0
Q ss_pred CcceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHH
Q 006661 221 PRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKF 271 (636)
Q Consensus 221 pRVvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASHLQKy 271 (636)
.+-.||.|-+..|++++..+|-+ =+.|..+ +|+-|..+|..|-++|
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~---W~~Ia~~--~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRR---WTKISKL--IGSRTVLQVKSYARQY 53 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSC---HHHHHHH--HSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHH
Confidence 34579999999999999999963 2467776 6899999999986554
No 156
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=54.67 E-value=45 Score=33.43 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=61.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~t--asdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
.++++|+.+.+. +.+++++++..-.|.. .-+..+..+.+.. .|++|+-..-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 455666655443 4444444332112222 2233444454443 47776642212333556666663 356777
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.. +.....+.+..|..+++.+|-+.++|.+.+..++.
T Consensus 312 ~~----~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 312 AS----DLDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp EC----CCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred Ee----cCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 52 22456677888889999999999999999988875
No 157
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=54.39 E-value=14 Score=37.71 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHHHhcc-CCCcEEEEecC------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006661 94 GFKLLEHIGLE-MDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (636)
Q Consensus 94 G~ELLk~Ir~~-~~iPVIILSa~------~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~ 148 (636)
.+++++++|.. .++|+|+|+-. .-...+.++.++|+++.|+--+..+|.......
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 35677777765 78999999732 335568889999999999977778775544443
No 158
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=53.99 E-value=97 Score=34.03 Aligned_cols=101 Identities=12% Similarity=0.181 Sum_probs=66.4
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----------CC
Q 006661 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (636)
Q Consensus 32 ~glRVLIVDD----D~~~re~L~~lL~~~g-y~V--~tasdg~eALe~Lre~k~~pDLVIlDI~MPd-----------mD 93 (636)
.|..++++|. .....+.++.+-+... ..| ..+.+.++|..+.+.. .|.|++.+.-.. ..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhC---CCEEEECCCCccccccccccCCCCC
Confidence 3667888873 3445555555555542 333 3677888887777653 788887442211 22
Q ss_pred HHHHHHHH---hccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 94 GFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 94 G~ELLk~I---r~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.++++..+ ....++|||.-.+-.+...+.+|+.+||+..++=
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 35555444 2334799999888889999999999999987664
No 159
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=53.69 E-value=1.7e+02 Score=30.95 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=60.7
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCC------------CC
Q 006661 33 GLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (636)
Q Consensus 33 glRVLIVDD----D~~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MPd------------mD 93 (636)
|..++.+|- .....+.++.+-+.+ +..|. .+.+.++|..+++. ..|.|.+.++ |+ ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 566788762 233334444333332 44444 47888888877654 3798888544 22 12
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.++.+..+..... |||.-..-.+...+.+|+.+||+...+
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3445555433222 888888888899999999999987665
No 160
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=52.77 E-value=1e+02 Score=32.19 Aligned_cols=101 Identities=9% Similarity=0.102 Sum_probs=64.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------CC
Q 006661 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (636)
Q Consensus 33 glRVLIVD----DD~~~re~L~~lL~~~-gy~V--~tasdg~eALe~Lre~k~~pDLVIlDI~MPd------------mD 93 (636)
+..++.++ +.....+.++.+-+.. +..| ..+.+.++|..+.+. ..|.|++... ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45566665 3344555666555554 4443 367888888777654 3798876432 21 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHHcCCCeE-EeCCC
Q 006661 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (636)
Q Consensus 94 G~ELLk~Ir---~~~~iPVIILSa~~d~e~v~kAle~GA~DY-LlKPi 137 (636)
-+.++..+. ...++|||.-..-.+...+.+|+.+||+.. +-+++
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 344444442 224699998888889999999999999976 44444
No 161
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=52.29 E-value=39 Score=33.77 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhCCCeEEE-----ECCHHHHHHHHHHcCCCceEEEE---------eCCCC---------CCC------
Q 006661 43 ITCLRILEQMLRRCLYNVTT-----CSQAAVALDILRERKGCFDVVLS---------DVHMP---------DMD------ 93 (636)
Q Consensus 43 ~~~re~L~~lL~~~gy~V~t-----asdg~eALe~Lre~k~~pDLVIl---------DI~MP---------dmD------ 93 (636)
....+.++.+-+..+..|.. +.+..+..+.+.+.. .|.|++ +..-. +..
T Consensus 150 ~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~ 227 (311)
T 1ep3_A 150 EVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKP 227 (311)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchH
Confidence 33455555554444554432 234456556665543 787777 33211 011
Q ss_pred -HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 94 -GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 94 -G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
.++++++++...++|||....-.+.+.+.+++..||+..
T Consensus 228 ~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V 267 (311)
T 1ep3_A 228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAV 267 (311)
T ss_dssp HHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEE
Confidence 247788887666899998888888999999999998865
No 162
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=52.27 E-value=16 Score=30.37 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=34.9
Q ss_pred cceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHH
Q 006661 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQ 269 (636)
Q Consensus 222 RVvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASHLQ 269 (636)
+-.||.|-+..|+++|.+.| .+= ++|.++ |++-|.+++..|-+
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G-~~W--~~IA~~--v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYK-DDW--NKVSEH--VGSRTQDECILHFL 60 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSS-SCH--HHHHHH--HSSCCHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHhC-CCH--HHHHHH--cCCCCHHHHHHHHH
Confidence 45799999999999999999 432 578887 46789999988833
No 163
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=51.85 E-value=20 Score=35.43 Aligned_cols=55 Identities=13% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHH---HHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVS---AVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e---~v~kAle~GA~DYLlKPi~~eeLk~~Iq~v 149 (636)
++++++.++...++|++++.- .+.. .+..+.+.||+++++-....+++.+.+..+
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLSY-YKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEECC-SHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEec-CcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 567788888777899988752 2211 123488999999998666666665555543
No 164
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=51.11 E-value=1e+02 Score=30.69 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=63.8
Q ss_pred HHHHHHhCCCeE--EEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHH
Q 006661 49 LEQMLRRCLYNV--TTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (636)
Q Consensus 49 L~~lL~~~gy~V--~tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~--~~~iPVIILSa~~d~e~v~k 123 (636)
+++.|..-...+ .... +..+.++.+.... +|.||+|++-.-.+.-++...++. ....++++=....+...+..
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~g--~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAG--LDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHTT--CSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcCC--cCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 555665533333 3333 4456666666544 999999998766666566555532 23456666555567778999
Q ss_pred HHHcCCCeEEe-CCCCHHHHHHHHHHH
Q 006661 124 GIRHGACDYLI-KPIREEELKNIWQHV 149 (636)
Q Consensus 124 Ale~GA~DYLl-KPi~~eeLk~~Iq~v 149 (636)
+++.|++..++ |--+.++++.+.+.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999987644 445788888776654
No 165
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=50.87 E-value=43 Score=25.96 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=34.6
Q ss_pred ceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHH
Q 006661 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQK 270 (636)
Q Consensus 223 VvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASHLQK 270 (636)
-.||.|-.+.++++|.+.|..+= ++|.+.| |+-|..++..|-++
T Consensus 9 ~~WT~eED~~L~~~v~~~G~~~W--~~Ia~~~--~~Rt~~qcr~r~~~ 52 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDCGFGNW--QDVANQM--CTKTKEECEKHYMK 52 (60)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCH--HHHHHHH--TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCcH--HHHHHHh--CCCCHHHHHHHHHH
Confidence 46999999999999999996442 4677774 78888888877433
No 166
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=50.71 E-value=1.1e+02 Score=31.72 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=53.8
Q ss_pred CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCC-----CCC-----------CCHHHHHHHHhccCCCcEEEEecCCCH
Q 006661 56 CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVH-----MPD-----------MDGFKLLEHIGLEMDLPVIMMSADGRV 118 (636)
Q Consensus 56 ~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~-----MPd-----------mDG~ELLk~Ir~~~~iPVIILSa~~d~ 118 (636)
.+..|. .+.+.+++....+. .+|.|+++-. ... ...+++++.++...++|||....-.+.
T Consensus 144 ~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~ 220 (369)
T 3bw2_A 144 AGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRG 220 (369)
T ss_dssp TTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSH
T ss_pred CCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCH
Confidence 344443 67777777655442 3899988531 110 234888998876678999988887789
Q ss_pred HHHHHHHHcCCCeEEe
Q 006661 119 SAVMRGIRHGACDYLI 134 (636)
Q Consensus 119 e~v~kAle~GA~DYLl 134 (636)
+.+.+++..||+....
T Consensus 221 ~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 221 GQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999987654
No 167
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=50.45 E-value=1e+02 Score=31.94 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=44.9
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 60 V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
.+.+.+.+++.+.++. .+|+|.+|- |+--++.+.++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 213 eVEvdtlde~~eAl~a---GaD~I~LDn----~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH---GARSVLLDN----FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHT---TCEEEEEES----CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 3578999998888874 389999995 33333333333222334566888888888888889999554
No 168
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=50.20 E-value=66 Score=30.44 Aligned_cols=86 Identities=14% Similarity=0.155 Sum_probs=55.9
Q ss_pred HHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC-----CCC----CCHHHHHHHHhccCCCcEEEEecC
Q 006661 47 RILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-----MPD----MDGFKLLEHIGLEMDLPVIMMSAD 115 (636)
Q Consensus 47 e~L~~lL~~~-gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~-----MPd----mDG~ELLk~Ir~~~~iPVIILSa~ 115 (636)
+.++.+-+.. +..+ ..+.+.+++.++.+. ..|+|.+-.. ..+ ..+++++++++...++|||....-
T Consensus 108 ~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI 184 (223)
T 1y0e_A 108 ELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNV 184 (223)
T ss_dssp HHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCC
Confidence 3344433332 4443 466777887765432 2787754321 011 124567888876568999998888
Q ss_pred CCHHHHHHHHHcCCCeEEeC
Q 006661 116 GRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 116 ~d~e~v~kAle~GA~DYLlK 135 (636)
.+.+.+.++++.||+.++.=
T Consensus 185 ~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 185 ITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 79999999999999988764
No 169
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=50.04 E-value=1.2e+02 Score=29.15 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC------
Q 006661 66 AAVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK------ 135 (636)
Q Consensus 66 g~eALe~Lre~k~~pD-LVIlDI~MPd-mDG--~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK------ 135 (636)
..+.++.+.+.. ++ ++++++.-.+ ..| ++++++++...++|||.-..-.+.+.+.++++.||+..+.=
T Consensus 153 ~~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHCC--CCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 445555555432 66 5556664222 122 78999998767899999888888899999999999987653
Q ss_pred CCCHHHHHHH
Q 006661 136 PIREEELKNI 145 (636)
Q Consensus 136 Pi~~eeLk~~ 145 (636)
|++.+++++.
T Consensus 231 ~~~~~~~~~~ 240 (253)
T 1thf_D 231 EIDVRELKEY 240 (253)
T ss_dssp CSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4455554443
No 170
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=50.01 E-value=67 Score=31.30 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCceEEE-EeCCCCC-CC--HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 66 AAVALDILRERKGCFDVVL-SDVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 66 g~eALe~Lre~k~~pDLVI-lDI~MPd-mD--G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
..+..+.+.+.. ++.|+ .++.-.+ .. .++++++++...++|||....-.+.+.+.++++.||+..++=
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 445545554433 56544 4543211 11 378999998777899999999888899999999999987664
No 171
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=49.50 E-value=1.3e+02 Score=30.29 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=70.3
Q ss_pred CccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEE-C--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 32 AGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTC-S--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 32 ~glRVLIVDDD-~~~re~L~~lL~~~gy~V~ta-s--dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
..++++|+.+. ....+.++++..+.+ ++... . +.++..+.+.. .|++++-... +.-|..+++.+. ..+
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma--~G~ 355 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGA 355 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH--TTC
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH--CCC
Confidence 45777777654 445577777777776 44433 3 45555555532 5887765433 444666777763 467
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|||.- .. ....+.++.| .+++..|-+.++|.+.+..++.
T Consensus 356 Pvi~s-~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 356 IPIAS-AV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEEE-SS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CeEEc-CC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 87763 22 2345556667 9999999999999999998876
No 172
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=49.49 E-value=46 Score=28.63 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=40.9
Q ss_pred eecHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 006661 224 VWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASHLQKFRLYLKRL 278 (636)
Q Consensus 224 vWt~ELH~kFv~AVnqLGidKAvP---KkILelMnVpgLTrenVASHLQKyRl~LKrl 278 (636)
.||.|=...|..|+.+++.+ .| .+|.+. +||-|.++|..|-+.+...++.+
T Consensus 10 ~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKD--TPDRWANVARA--VEGRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHH--STTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--CCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999999854 33 467776 79999999999977766655554
No 173
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=49.22 E-value=50 Score=31.25 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=45.8
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCC--------CCCHHHHHHHHhccCC-CcEEEEecCCCHHHHHHHHHcCCCeE
Q 006661 62 TCSQAAVALDILRERKGCFDVVLSDVHMP--------DMDGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 62 tasdg~eALe~Lre~k~~pDLVIlDI~MP--------dmDG~ELLk~Ir~~~~-iPVIILSa~~d~e~v~kAle~GA~DY 132 (636)
.+.+..++..... .. +|.|++..-.| ...|++.+++++...+ +||++..+-. .+.+.++++.||+.+
T Consensus 122 s~~t~~e~~~a~~-~g--~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEE-DG--ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHH-HT--CSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHh-CC--CCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 4577777655443 33 79888622111 1236888888865555 8988876655 666778888999887
Q ss_pred Ee
Q 006661 133 LI 134 (636)
Q Consensus 133 Ll 134 (636)
..
T Consensus 198 ~v 199 (227)
T 2tps_A 198 SM 199 (227)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 174
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=48.97 E-value=24 Score=34.21 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---------HHHHHHHHhccCCCcEEEEec
Q 006661 48 ILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFD-VVLSDVHMPDMD---------GFKLLEHIGLEMDLPVIMMSA 114 (636)
Q Consensus 48 ~L~~lL~~~gy~V~tas---dg~eALe~Lre~k~~pD-LVIlDI~MPdmD---------G~ELLk~Ir~~~~iPVIILSa 114 (636)
.+.+.+++.+..+...- +..+.++.+... .| +|.+ +..++.. +++.+++++...++||++-.+
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GG 199 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFG 199 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEee
Confidence 34444444454443222 445666665544 24 5533 2224322 356777777656799888777
Q ss_pred CCCHHHHHHHHHcCCCeEEeC
Q 006661 115 DGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 115 ~~d~e~v~kAle~GA~DYLlK 135 (636)
-...+.+.++++.||+.+++=
T Consensus 200 I~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 200 VSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCEEEEc
Confidence 777788999999999998875
No 175
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=48.74 E-value=4.2 Score=41.24 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=34.7
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHHcCCCceEEEEe
Q 006661 33 GLRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAV--ALDILRERKGCFDVVLSD 86 (636)
Q Consensus 33 glRVLIVDDD--~~~re~L~~lL~~~gy~V~tasdg~e--ALe~Lre~k~~pDLVIlD 86 (636)
+-|||||+++ +.....+.+.|+..+|+|.......- -.+.+. . +|+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~--yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--K--QDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--T--CSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--c--CCEEEEc
Confidence 3589999998 66788899999999999876553321 112232 2 8998886
No 176
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=48.62 E-value=1.1e+02 Score=31.46 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=56.4
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCC-------------------------CCC----------CCHHHHHHHHhcc
Q 006661 60 VTTCSQAAVALDILRERKGCFDVVLSDVH-------------------------MPD----------MDGFKLLEHIGLE 104 (636)
Q Consensus 60 V~tasdg~eALe~Lre~k~~pDLVIlDI~-------------------------MPd----------mDG~ELLk~Ir~~ 104 (636)
+..+.+..||+..+... .|+|.+.-. |++ ...++++++++..
T Consensus 129 vv~v~~~~Ea~~a~~~G---ad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISEG---ASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHHT---CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhCC---CCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 34677888888777653 688777632 111 1235677777665
Q ss_pred CCCcEEE--EecCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHH
Q 006661 105 MDLPVIM--MSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVV 150 (636)
Q Consensus 105 ~~iPVII--LSa~~d~e~v~kAle~GA~DYLl-----KPi~~eeLk~~Iq~vl 150 (636)
..+|||+ -++-.+.+.+.+++++||+.+++ |.-++.+....+...+
T Consensus 206 ~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai 258 (297)
T 4adt_A 206 KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAV 258 (297)
T ss_dssp TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHH
Confidence 6788874 44445889999999999999876 3345554444444433
No 177
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=48.58 E-value=1.1e+02 Score=33.28 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=65.7
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCC------------CC
Q 006661 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (636)
Q Consensus 33 glRVLIVD----DD~~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MPd------------mD 93 (636)
|..++++| +.....+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|.+-+. |+ .-
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 55677776 4455566666666655 33333 47788888776653 3798887321 11 22
Q ss_pred HHHHHHHHhc---cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 94 GFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 94 G~ELLk~Ir~---~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.++++..+.. ..++|||.-.+-.+.+.+.+++.+||+...+=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 4555555532 34799999888889999999999999887653
No 178
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=48.50 E-value=1.2e+02 Score=32.86 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=63.6
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC--------------CC
Q 006661 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM--------------PD 91 (636)
Q Consensus 33 glRVLIVD----DD~~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~M--------------Pd 91 (636)
|..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+.+.. .|.|.+-.+- |.
T Consensus 267 G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~ 343 (514)
T 1jcn_A 267 GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQ 343 (514)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCH
T ss_pred CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccc
Confidence 44455551 2233445566555554 45544 477777777666542 6877774321 11
Q ss_pred CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 92 MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 92 mDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
...+.++..++...++|||.-..-.+...+.+++.+||+....
T Consensus 344 ~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 344 GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 2245667777666689999988888899999999999987643
No 179
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=48.36 E-value=91 Score=32.32 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=55.3
Q ss_pred EEEEeCCHHHHHHHHHHHH----hC-C-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 36 VLVVDDDITCLRILEQMLR----RC-L-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 36 VLIVDDD~~~re~L~~lL~----~~-g-y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
|||=|.+....-.+...++ .. . ...+.+.+.+|+.+.++.. .|+|.+|-.-| -++-+.++....-..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~aG---aDiImLDn~s~----~~l~~av~~~~~~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSNN---VDMILLDNMSI----SEIKKAVDIVNGKSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHTT---CSEEEEESCCH----HHHHHHHHHHTTSSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHcC---CCEEEECCCCH----HHHHHHHHhhcCceE
Confidence 6776766554433333332 22 1 2345899999999988753 89999995322 222222222222356
Q ss_pred EEEecCCCHHHHHHHHHcCCCeE
Q 006661 110 IMMSADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DY 132 (636)
|..|+--+.+.+.+..+.|++.+
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEE
Confidence 77888888888888888888654
No 180
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=48.11 E-value=99 Score=29.23 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHcCCCceEEE-EeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFDVVL-SDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVI-lDI~MPdm---DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+.++.+.+.. .|.|+ .++.-.+. -.++.+++++...++|||+-..-...+.+.++++.||+..+.
T Consensus 155 ~~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 155 DAVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 3445555555443 67664 45543211 136778888765689999888877778889999999998765
No 181
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=46.99 E-value=59 Score=31.67 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 65 dg~eALe~Lre~k~~pD-LVIlDI~MPdm---DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
+..+..+.+.+.. .| |.+.|...... .-+++++.++...++|+|+.....+.+.+.++++.||+..++=-
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 4556556555543 55 55567654321 12788999987788999998777888889999999999877643
No 182
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=46.88 E-value=1.6e+02 Score=30.76 Aligned_cols=92 Identities=9% Similarity=0.044 Sum_probs=57.8
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCC
Q 006661 35 RVLVVDDDITCLRILEQMLR----RCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~----~~gy--~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I-r~~~~i 107 (636)
-|||-|.+....-.+...++ .... ..+.+.+.+++.+.++. ..|+|.+|-. +- +.++++ +....-
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~----~~-~~l~~av~~l~~~ 275 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNF----SL-EMMREAVKINAGR 275 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESC----CH-HHHHHHHHHHTTS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCC----CH-HHHHHHHHHhCCC
Confidence 37777776544333333332 2222 34588999999888874 3899999963 33 333333 222223
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
..|..|+--+.+.+.+..+.|++.+-+
T Consensus 276 v~ieaSGGIt~~~I~~~a~tGVD~isv 302 (320)
T 3paj_A 276 AALENSGNITLDNLKECAETGVDYISV 302 (320)
T ss_dssp SEEEEESSCCHHHHHHHHTTTCSEEEC
T ss_pred CeEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 567788888999999988999865543
No 183
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=46.71 E-value=92 Score=28.91 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=50.6
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcC-CCceEEEEeCCCCCCCHHHHHHHH
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasdg~eALe~Lre~k-~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
..+|.+.+|..+|-++...+..+..+...+. .| ....+..+.+..+.... ..+|+|++|...+ +-.++++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 4566677999999999999999999987765 24 36778877776655422 3599999986422 233455555
No 184
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=46.53 E-value=87 Score=30.12 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 65 dg~eALe~Lre~k~~pD-LVIlDI~MPdmD---G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+..+..+.+.+.. .| |.+.|....... -+++++++++..++|||+...-.+.+.+.++++.||+..++=
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 5555556555443 45 456676543322 255677887777899999999999999999999998887663
No 185
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=46.43 E-value=88 Score=29.59 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=48.4
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 63 CSQAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 63 asdg~eALe~Lre~k~~pD-LVIlDI~MPdm---DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
..+..+.++.+.+.. .| |.+.|...... ..+++++.++...++|+++...-.+.+.+.++++.||+...+
T Consensus 32 ~~~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 32 VGDPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp EECHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cccHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 345666666666543 67 55666543221 246777888766789999887778888889999999887764
No 186
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=45.24 E-value=93 Score=31.83 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=54.3
Q ss_pred hCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcC
Q 006661 55 RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (636)
Q Consensus 55 ~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~M-----PdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~G 128 (636)
+.++.|. .+.+.++|..+.+ . .+|.|+++-.- .....++++++++...++|||....-.+.+.+.+++..|
T Consensus 108 ~~g~~v~~~v~~~~~a~~~~~-~--GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~G 184 (332)
T 2z6i_A 108 EAGIIVIPVVPSVALAKRMEK-I--GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLG 184 (332)
T ss_dssp HTTCEEEEEESSHHHHHHHHH-T--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTT
T ss_pred HcCCeEEEEeCCHHHHHHHHH-c--CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 3455444 5667776655443 2 37988886321 123568888888766789999988888899999999999
Q ss_pred CCeEEe
Q 006661 129 ACDYLI 134 (636)
Q Consensus 129 A~DYLl 134 (636)
|+....
T Consensus 185 AdgV~v 190 (332)
T 2z6i_A 185 AEAVQV 190 (332)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 987654
No 187
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=45.11 E-value=2.1e+02 Score=28.98 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=60.7
Q ss_pred HHHHHHhCCC-eEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHH
Q 006661 49 LEQMLRRCLY-NVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (636)
Q Consensus 49 L~~lL~~~gy-~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir--~~~~iPVIILSa~~d~e~v~k 123 (636)
+++.|.. |. .+. .-.+..+.++.+... .+|.|++|.+=...+--.+...++ .....++++=+...+...+..
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 5566654 33 333 333444555666554 499999998554444434444443 223567888777778888999
Q ss_pred HHHcCCCeEEe-CCCCHHHHHHHHHH
Q 006661 124 GIRHGACDYLI-KPIREEELKNIWQH 148 (636)
Q Consensus 124 Ale~GA~DYLl-KPi~~eeLk~~Iq~ 148 (636)
+++.|++..++ |--+.++++.+++.
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 99999987544 33478887766553
No 188
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=44.91 E-value=94 Score=32.74 Aligned_cols=89 Identities=11% Similarity=0.154 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC---------C--CCCHHHHHHHHhc---cC
Q 006661 43 ITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM---------P--DMDGFKLLEHIGL---EM 105 (636)
Q Consensus 43 ~~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~M---------P--dmDG~ELLk~Ir~---~~ 105 (636)
....+.++.+-+.. +..|. .+.+.++|..+.+ . .+|.|++-..- . +.-.++.+..+.. ..
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~-~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS-V--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT-T--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh-c--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34445554444444 44544 4677777665543 2 38988872210 0 1223555555532 45
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
++|||....-.+.+.+.+++..||+...+
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 79999888888899999999999998765
No 189
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=44.05 E-value=1.7e+02 Score=26.00 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=69.8
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEEE-E--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 33 glRVLIVDDD-~~~re~L~~lL~~~gy~V~t-a--sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
.++++|+.+. +...+.++.++.+.+ .|.. . -+.++..+++.. .|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 5788888664 335677788887766 4544 3 344455555532 6888874433 334666777764 4677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
||.. . .....+.+ .|..+++..|-+.++|...+.+++.
T Consensus 142 vI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 6653 2 22344555 7888999999999999999988875
No 190
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=43.95 E-value=93 Score=29.80 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=48.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasdg~eALe~Lre~---k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
+|.+.+|..+|-++...+..++.+.+.++ .| ....++.+.+..+... ...+|+|++|..- .+-.++++.+
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~--~~~~~~l~~~ 167 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADK--PNYIKYHERL 167 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCG--GGHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCch--HHHHHHHHHH
Confidence 45567999999999999999999988765 24 3567887776655321 2459999999532 2233444444
No 191
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=43.87 E-value=34 Score=33.47 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeC---CC-CC-CCHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 65 QAAVALDILRERKGCFDVVLSDV---HM-PD-MDGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI---~M-Pd-mDG~ELLk~Ir~~~~iPVI--ILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
+..++++.+.+.. .|++=+|+ +. |. ..|+++++.|+...+.|+. +|+. +...++..+.++||+...+-..
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcc
Confidence 4455666665432 56665555 21 22 2377999999876666766 6664 4455778899999998866554
Q ss_pred --CHHHHHHHHHHH
Q 006661 138 --REEELKNIWQHV 149 (636)
Q Consensus 138 --~~eeLk~~Iq~v 149 (636)
..++..+.++.+
T Consensus 95 ~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 95 HNASPHLHRTLCQI 108 (230)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 444555555554
No 192
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=43.79 E-value=2.4e+02 Score=27.94 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=59.8
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHH
Q 006661 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (636)
Q Consensus 49 L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir--~~~~iPVIILSa~~d~e~v~kA 124 (636)
+++.|..-. +.+.......+.++.+... .+|.|++|.+=.-.+--++...++ .....++++=+...+...+..+
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~ 86 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 555565422 2333333445555666554 499999998544344444444443 2235677776666778888999
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHH
Q 006661 125 IRHGACDYLI-KPIREEELKNIWQH 148 (636)
Q Consensus 125 le~GA~DYLl-KPi~~eeLk~~Iq~ 148 (636)
++.|++..++ |--+.++++.+++.
T Consensus 87 l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 87 LDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999987533 33578887766554
No 193
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=43.25 E-value=21 Score=33.52 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhccC-CCcEEE--EecCCCHHHHHHHHHcCCCeEEeCCCCH
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEM-DLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir~~~-~iPVII--LSa~~d~e~v~kAle~GA~DYLlKPi~~ 139 (636)
+.+++++.++......| ++++.++- .+|.++++.|++.. +.|+++ +..+-...++..+.+.||+....-+...
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 45666666654431123 35555542 35677888887653 778875 4432123447888999998887666544
Q ss_pred -HHHHHHHHH
Q 006661 140 -EELKNIWQH 148 (636)
Q Consensus 140 -eeLk~~Iq~ 148 (636)
+.+..+++.
T Consensus 89 ~~~~~~~~~~ 98 (207)
T 3ajx_A 89 DSTIAGAVKA 98 (207)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 455544443
No 194
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=43.22 E-value=96 Score=29.15 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=57.9
Q ss_pred HHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccC--CCcEEEEecCCCHHHHHHHHH
Q 006661 51 QMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIR 126 (636)
Q Consensus 51 ~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MP-dmDG~ELLk~Ir~~~--~iPVIILSa~~d~e~v~kAle 126 (636)
+..++.+..+ ..+.+..++.+..+. ..|.|++ .| +..|++.+++++... ++||+...+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 3344445442 247888888766542 3798886 22 123678888886544 48988877665 677888899
Q ss_pred cCCCeEEeCC-C-CH----HHHHHHHHHH
Q 006661 127 HGACDYLIKP-I-RE----EELKNIWQHV 149 (636)
Q Consensus 127 ~GA~DYLlKP-i-~~----eeLk~~Iq~v 149 (636)
.||+.+..=- + .. ++....++.+
T Consensus 168 ~Ga~gv~vGsai~~~~~~~~d~~~~~~~l 196 (212)
T 2v82_A 168 AGCAGAGLGSDLYRAGQSVERTAQQAAAF 196 (212)
T ss_dssp HTCSEEEECTTTCCTTCCHHHHHHHHHHH
T ss_pred cCCCEEEEChHHhCCCCCHHHHHHHHHHH
Confidence 9999987442 2 22 4555555444
No 195
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=43.08 E-value=1.5e+02 Score=30.37 Aligned_cols=66 Identities=8% Similarity=-0.005 Sum_probs=45.0
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 60 V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I-r~~~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
.+.+.+.+|+.+.++. ..|+|.+|-.-| +.++++ +....-..|..|+--+.+.+.+..+.|++.+-
T Consensus 202 eVEv~tl~ea~eAl~a---GaD~I~LDn~~~-----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 202 EVEVTNLDELNQAIAA---KADIVMLDNFSG-----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESCCH-----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEEcCCCH-----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 4589999999988875 389999996333 223322 22122345668888888888888888986553
No 196
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=42.77 E-value=1.6e+02 Score=26.19 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=65.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--hC----CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006661 33 GLRVLVVDDDITCLRILEQMLR--RC----LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~--~~----gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~ 106 (636)
.++++|+.+.+.. ..+++++. .. ...+.-.-+.++..++++. .|++|+-.. .+.-|..+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4677777654321 23334443 21 2233344455666666654 588886322 3334666777764 46
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006661 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (636)
Q Consensus 107 iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrk 152 (636)
+|||... .....+.++.|..+++. +-+.++|.+.+.+++..
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 7887632 23455667778889999 99999999999988753
No 197
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=42.30 E-value=67 Score=26.26 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=33.8
Q ss_pred ceecHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHHHHHH
Q 006661 223 VVWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASHLQKF 271 (636)
Q Consensus 223 VvWt~ELH~kFv~AVnqLGidKAvP---KkILelMnVpgLTrenVASHLQKy 271 (636)
-.||.|=.+.|..|+...+.+ +| .+|.+.| |-|.++|..|-+++
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~--t~~RW~~IA~~l---gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGG--TPGRWEKIAHEL---GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHH---TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCC--CCcHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 369999999999999998743 34 4577765 67999998884443
No 198
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=41.69 E-value=18 Score=37.31 Aligned_cols=70 Identities=10% Similarity=-0.019 Sum_probs=48.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHH
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHI 101 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MP-dmDG~ELLk~I 101 (636)
.+-++.+||-++...+.|++-+....-..+...|+.+++..+......+|+|++|==-. ..+.-++++.|
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 34689999999999999988887643334467788888887654334589999995222 12344455554
No 199
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=41.66 E-value=1.9e+02 Score=28.41 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=38.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.|++++.- |.-+++.+. ..+|||....... ..+.++.| .+++..+ +.++|.+.+.+++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 47776643 444555542 4678886522122 23446778 8899877 99999999988875
No 200
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=41.17 E-value=2.4e+02 Score=27.19 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=49.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 29 ~fP~glRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasdg~eALe~Lre~---k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
.+|.+.+|..||-++...+..++.+.+.++ .|. ...++.+.+..+... ...||+|++|... .+-..+++.+
T Consensus 100 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 176 (247)
T 1sui_A 100 AIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRL 176 (247)
T ss_dssp HSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHH
Confidence 345567999999999999999999988765 343 567777776655321 2459999999643 3344555554
No 201
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=41.02 E-value=1.1e+02 Score=26.58 Aligned_cols=94 Identities=10% Similarity=0.112 Sum_probs=49.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iPV 109 (636)
.|.+|.++|.++...+.++ ..++.+.... .-.+.|+.+.-. ..|+||+-+.-. .+-..++..++. .+.++|
T Consensus 29 ~g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~~~-~~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHLE--CAKWLILTIPNG-YEAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TTCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTGG--GCSEEEECCSCH-HHHHHHHHHHHHHCSSSEE
T ss_pred CCCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCcc--cCCEEEEECCCh-HHHHHHHHHHHHHCCCCeE
Confidence 3567888888887655443 3466654322 112333332212 368888754221 112233444443 456666
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLl 134 (636)
|.... +.+......+.|++..+.
T Consensus 102 iar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 102 IARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEEC--CHHHHHHHHHCCCCEEEC
Confidence 66553 445556666788875553
No 202
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.98 E-value=96 Score=34.91 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=68.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006661 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (636)
Q Consensus 32 ~glRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sdg~eALe~Lre~k~~pDLVIlDI~MPd-mD-G~ELLk~Ir 102 (636)
.+-+||++ |-|.+-...+..+|+..||+|+.. ...++.++.+++.. +|+|.+-..|.. ++ --++++.|+
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr 174 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEME 174 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHH
Confidence 34578877 777888899999999999999743 46778888888776 999999887643 22 123455564
Q ss_pred c-cCCCcEEEEecCCCHHHHHHHH---HcCCCeEEeC
Q 006661 103 L-EMDLPVIMMSADGRVSAVMRGI---RHGACDYLIK 135 (636)
Q Consensus 103 ~-~~~iPVIILSa~~d~e~v~kAl---e~GA~DYLlK 135 (636)
. ..++||++--+....++..+-+ -.||+.|...
T Consensus 175 ~~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D 211 (579)
T 3bul_A 175 RQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN 211 (579)
T ss_dssp HTTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS
T ss_pred HcCCCCeEEEEccccchhhhhhhhhhcccCCeEEECC
Confidence 3 3578887765555554432111 1288777653
No 203
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=40.46 E-value=1.9e+02 Score=31.58 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=65.9
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCCH
Q 006661 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (636)
Q Consensus 33 glRVLIVD----DD~~~re~L~~lL~~~-gy~V--~tasdg~eALe~Lre~k~~pDLVIlDI~MP-----------dmDG 94 (636)
|..++++| +.....+.++.+-+.. +..| ..+.+.++|..+++.. .|.|++.+.-. +..-
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~Vg~g~Gs~~~tr~~~g~g~p~ 319 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIGPGSICTTRIVTGVGVPQ 319 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHT---CSEEEECSSCCTTBCHHHHHCCCCCH
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhC---CCEEEECCCCCcCcccccccCCCccH
Confidence 55677776 4455666777766665 3333 3577888887766543 79888753211 1223
Q ss_pred HHHHHHHhc---cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 95 FKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 95 ~ELLk~Ir~---~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
++++..+.. ..++|||.-.+-.+...+.+|+.+||+...+=
T Consensus 320 ~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 320 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 455555432 34799998878888999999999999887664
No 204
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=39.54 E-value=78 Score=30.65 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pD-LVIlDI~MP---dmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+..+..+.+.+.. +| |.+.|+.-. ...-+++++++++..++|||+--.-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 4555555555533 55 455676422 22237889999877899999988888889999999999877654
No 205
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=38.79 E-value=1.8e+02 Score=25.40 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=48.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHc--CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~--k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
.|||.|+-|..+ ..+ ++-.|.++..+.+.+++.+.+++. ...+.+|+++-++-+ .--+.+.+++.....|+|
T Consensus 3 ~mkiaVIgD~dt-v~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~-~i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIADPET-AQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP-DPERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEECHHH-HHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS-CHHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeCHHH-HHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH-hhHHHHHHHHhCCCCeEE
Confidence 478999998432 222 223477888888888776665531 124889999876654 333455666545668887
Q ss_pred EEecC
Q 006661 111 MMSAD 115 (636)
Q Consensus 111 ILSa~ 115 (636)
+.-..
T Consensus 77 l~IPs 81 (109)
T 2d00_A 77 LPIAG 81 (109)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 75443
No 206
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=38.60 E-value=1.2e+02 Score=29.14 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc-----C-CCeEE
Q 006661 65 QAAVALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-----G-ACDYL 133 (636)
Q Consensus 65 dg~eALe~Lre~k~~pD-LVIlDI~----MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~-----G-A~DYL 133 (636)
+..+..+.+.+. .++ +++.++. +.+. .++++++++...++|||....-.+.+.+.++++. | |++.+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 455554545443 366 5666653 2233 3888999876668999999888888999999988 9 88765
Q ss_pred e------CCCCHHHHHHH
Q 006661 134 I------KPIREEELKNI 145 (636)
Q Consensus 134 l------KPi~~eeLk~~ 145 (636)
+ .+++.+++++.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 5 46666666543
No 207
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=38.38 E-value=1.6e+02 Score=29.78 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC-C--CCCCHHHHHHHHh-cc-CCCcEEEEecCCCH
Q 006661 45 CLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-M--PDMDGFKLLEHIG-LE-MDLPVIMMSADGRV 118 (636)
Q Consensus 45 ~re~L~~lL~~~gy~V-~tasdg~eALe~Lre~k~~pDLVIlDI~-M--PdmDG~ELLk~Ir-~~-~~iPVIILSa~~d~ 118 (636)
.+..+.......|..+ +.+.+.+|+...+.. .+|+|=+.-. + -..| ++...+|. .. .++++|.-++-...
T Consensus 157 ~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~ 232 (272)
T 3tsm_A 157 LAKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTH 232 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCH
Confidence 3444444555667765 477888887665532 3787765421 1 1222 34444443 22 36889999999999
Q ss_pred HHHHHHHHcCCCeEEeC
Q 006661 119 SAVMRGIRHGACDYLIK 135 (636)
Q Consensus 119 e~v~kAle~GA~DYLlK 135 (636)
+.+.++.++||+.+|+-
T Consensus 233 edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 233 EDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999874
No 208
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=38.23 E-value=43 Score=32.09 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=47.6
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 29 ~fP~glRVLIVDDD~~~re~L~~lL~~~gy~---V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
.+|.+.+|..||-++...+..++.+.+.++. |. ...++.+.+..+. ...||+|++|...+ +-.++++.+
T Consensus 77 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~--~~~~~l~~~ 149 (221)
T 3dr5_A 77 GLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPM--DLKALVDAA 149 (221)
T ss_dssp HSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTT--THHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHH--HHHHHHHHH
Confidence 3566789999999999999999999887654 54 4556666544331 23599999997543 333455544
No 209
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=38.16 E-value=1.5e+02 Score=30.11 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=62.9
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006661 33 GLRVLVVDDD---ITCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (636)
Q Consensus 33 glRVLIVDDD---~~~re~L~~lL~~~gy--~V~tas--dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~ 105 (636)
.++++|+.+. ....+.+++++.+.+. .|.... +.++..+.+.. .|++|+-.. .+.-|..+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4566666551 1234455555555432 233322 33555555543 477666332 2333566666663 4
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 106 ~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.+|||.. ... ...+.+..|..+++..|-+.++|.+++..++.
T Consensus 349 G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAA-RVG---GLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEE-SCT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEec-CCC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 6788763 222 23455677888999999999999999988875
No 210
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=37.43 E-value=1.1e+02 Score=28.43 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=49.6
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 006661 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 27 ~d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~--V-~tasdg~eALe~Lre~k--~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
...+|.+.+|..+|-++...+..++.+...+.. | ....+..+.+..+.... ..+|+|++|... .+-.++++.+
T Consensus 83 a~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~ 160 (225)
T 3tr6_A 83 GLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEES 160 (225)
T ss_dssp HTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHH
T ss_pred HHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHH
Confidence 345666789999999999999999999877542 4 35678777766554210 349999988642 2233444444
No 211
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=37.24 E-value=1.2e+02 Score=28.88 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=48.4
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasdg~eALe~Lre~k--~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
..+|.+.+|..+|-++...+..++.+...+. .|. ...+..+.+..+.... ..+|+|++|... .+-.++++.+
T Consensus 92 ~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 168 (232)
T 3cbg_A 92 LQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIG 168 (232)
T ss_dssp TTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHH
Confidence 4455577999999999999999988877654 243 5677777666554321 359999998642 2233445544
No 212
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=37.17 E-value=94 Score=30.41 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=36.5
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 80 pDLVIlDI~MPdmDG-------~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+|.|++..--|+..| ++-++++++. .+.+ |.+.+--+.+.+.++.++||+.++.
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 688887666676655 4445566543 2444 4455555678899999999998765
No 213
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=37.14 E-value=47 Score=33.69 Aligned_cols=60 Identities=10% Similarity=0.191 Sum_probs=45.9
Q ss_pred HHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 74 RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 74 re~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
++.. ||+||.=---|..-|-.-.+++-...++|.|+++...... ..++++..-.+||+-+
T Consensus 61 ~~~~--pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk 120 (283)
T 1qv9_A 61 EDFE--PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVK 120 (283)
T ss_dssp HHHC--CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEET
T ss_pred hhcC--CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEe
Confidence 4545 8998886656667788888887677899999999776665 5688887778886654
No 214
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=37.04 E-value=42 Score=32.60 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+.+++.++..+ ||+| ++ ||+.- -++++++++..++|||.=---.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i--Ei-LPGi~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI--EL-LPGII-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE--EE-ECTTC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE--EE-CCchh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 35777777766 8976 33 67754 3788888877899999877778999999999999987654
No 215
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=36.76 E-value=1.8e+02 Score=29.56 Aligned_cols=95 Identities=9% Similarity=0.014 Sum_probs=56.8
Q ss_pred EEEEeCCHHHHH----HHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 36 VLVVDDDITCLR----ILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 36 VLIVDDD~~~re----~L~~lL~~~g--y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
+||-|++..... .++..-+... ...+.+.+.+++.+.++. ..|+|.+|-.-| .+--+.++.++....-..
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~-~~~~~~v~~l~~~~~~v~ 243 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAV-WQTQTAVQRRDSRAPTVM 243 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCH-HHHHHHHHHHHHHCTTCE
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhhccCCCeE
Confidence 677776644322 3333222222 234578888998888764 379999997333 122233444433111245
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLl 134 (636)
|..|+--+.+.+.+..+.|++.+.+
T Consensus 244 ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 244 LESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp EEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEE
Confidence 6678877888888888999876643
No 216
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=36.65 E-value=1.6e+02 Score=28.17 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHcCCCceEE-EEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 65 QAAVALDILRERKGCFDVV-LSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLV-IlDI~MPdm---DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+..+..+.+.+.. .|.| +.|...... ..+++++.+++..++|+++...-.+.+.+.++++.||+..++-
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4555555555433 5644 455432211 2356777887777899999888888889999999999887664
No 217
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=36.60 E-value=1.8e+02 Score=27.68 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc---CCCeEEe
Q 006661 66 AAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI 134 (636)
Q Consensus 66 g~eALe~Lre~k~~pD-LVIlDI~MPdm---DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~---GA~DYLl 134 (636)
..+.++.+.+.. +| ++++++.-.+. -.+++++++++..++|||.-..-.+.+.+.++++. ||+.++.
T Consensus 151 ~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 151 LWDVLERLDSEG--CSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp HHHHHHHHHHTT--CCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHHHHHhCC--CCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 455555555442 66 55677654322 24778888877678999998888888999999998 9988765
No 218
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=36.56 E-value=1.7e+02 Score=28.76 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=49.8
Q ss_pred EEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCC-
Q 006661 60 VTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI- 137 (636)
Q Consensus 60 V~tasdg~eALe~Lre~-k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi- 137 (636)
|....+.++++.+.+.. ...+++|=+.++ .-++++.++.|++...-.+|-.-.-.+.+.+.+++++||.. +.-|.
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~f-ivsP~~ 94 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLR--TEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQF-IVSPGL 94 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSE-EEESSC
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCC--CccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCE-EEeCCC
Confidence 44455566665555431 123555444444 34688888888754433566566666889999999999965 44564
Q ss_pred CHHHHHH
Q 006661 138 REEELKN 144 (636)
Q Consensus 138 ~~eeLk~ 144 (636)
+++-++.
T Consensus 95 ~~evi~~ 101 (217)
T 3lab_A 95 TPELIEK 101 (217)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 4444433
No 219
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=36.55 E-value=37 Score=31.94 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE--EecCCCHHHHHHHHHcCCCeEEeCCCCH
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir~~-~~iPVII--LSa~~d~e~v~kAle~GA~DYLlKPi~~ 139 (636)
+.+++++.++......|+| .+-+|- ..|+++++.+++. .++||.+ +..+.....+.++.++||+..++-....
T Consensus 11 ~~~~~~~~~~~~~~~~dii--e~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDII--EVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEE--EECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhcCccEE--EeCcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 4455555554432224533 222232 3578889999765 5788754 3333333348899999998887744433
Q ss_pred -HHHHHHHHHH
Q 006661 140 -EELKNIWQHV 149 (636)
Q Consensus 140 -eeLk~~Iq~v 149 (636)
+.+...++.+
T Consensus 89 ~~~~~~~~~~~ 99 (211)
T 3f4w_A 89 VLTIQSCIRAA 99 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 4444444443
No 220
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=36.33 E-value=2e+02 Score=29.81 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=68.5
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~-~~re~L~~lL~~~gy~V~-tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
.++++|+-+.+ ..++.++++..+.+-.|. ... +.++..+.+.. .|++++--. .+.=|+-+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH--CCCCE
Confidence 57788886653 466777777776543443 223 33333355543 588776433 2334556666663 35788
Q ss_pred EEEecCCCHHHHHHHHHcC---------CCeEEeCCCCHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~G---------A~DYLlKPi~~eeLk~~Iq~vl 150 (636)
|.. . .....+.+..| ..+++..|-+.++|.+.+.+++
T Consensus 393 I~s-~---~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 393 VVA-R---TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EEE-S---SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EEe-C---CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 763 2 23455667777 8899999999999999998887
No 221
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=36.01 E-value=1.4e+02 Score=28.52 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHc---CCCeEEe
Q 006661 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI 134 (636)
Q Consensus 65 dg~eALe~Lre~k~~pD-LVIlDI~MPdm---DG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~---GA~DYLl 134 (636)
+..+.++.+.+.. +| ++++++.-.+. -.++++++++...++|||.-..-.+.+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNKEG--CARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHHTT--CCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 4555555555432 67 55677642211 13788889876678999998888888999999999 9998765
No 222
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=35.87 E-value=1.3e+02 Score=28.01 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=48.8
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasdg~eALe~Lre~k--~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
..+|.+.+|..+|-++...+..++.+...+. .+ ....+..+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 89 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 89 LALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 4456567999999999999999999887654 34 35667777666554321 34999999864 33334455554
No 223
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=35.52 E-value=2.6e+02 Score=28.08 Aligned_cols=108 Identities=10% Similarity=0.077 Sum_probs=65.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 31 PAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 31 P~glRVLIVDDD~~~re~L~~lL~~~-gy~V~-tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
-.+|||-||--=..-+......+... +.+++ .|+ +.+.|-+..++.. ..-+..|+ +.+-...++
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-----------~ell~~~~i 87 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-----------EEMLASDVI 87 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-----------HHHHHCSSC
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-----------HHHhcCCCC
Confidence 45689999988776665555555543 66765 344 3334444444332 22233332 222223455
Q ss_pred cEEEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 108 PVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 108 PVIILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
-+|+++... -.+.+.+|+++|..=|+-||+ +.++..++++.+-+
T Consensus 88 DaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 88 DAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 565555444 357789999999999999996 67788777765543
No 224
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=35.43 E-value=40 Score=29.06 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=45.3
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006661 31 PAGLRVLVVDDD----ITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (636)
Q Consensus 31 P~glRVLIVDDD----~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~ 105 (636)
|..||||+|=+. ......+++.+.+.++++. .+.+..++-+.+ ..+|+||+-.++... ++-++......
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~~ 75 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKPK 75 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhccc
Confidence 445788777332 2667788888888776432 222333333322 248999998776543 33333332234
Q ss_pred CCcEEEEec
Q 006661 106 DLPVIMMSA 114 (636)
Q Consensus 106 ~iPVIILSa 114 (636)
++||+.+..
T Consensus 76 ~~pv~~I~~ 84 (109)
T 2l2q_A 76 GIPIEIINT 84 (109)
T ss_dssp TCCEEECCH
T ss_pred CCCEEEECh
Confidence 789988765
No 225
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=35.38 E-value=45 Score=33.41 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=44.2
Q ss_pred CCCCCCCcceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 006661 215 PSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLY 274 (636)
Q Consensus 215 ~S~~KKpRVvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASHLQKyRl~ 274 (636)
+....|..-.||.|-+..|++|+...|-+ =.+|-++ |++-|..+|.+|-.+|+..
T Consensus 126 pe~~~k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 126 PEVIQKCNARWTTEEQLLAVQAIRKYGRD---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 33444566689999999999999999954 2468876 7899999999998887754
No 226
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=35.21 E-value=1.3e+02 Score=28.71 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=55.5
Q ss_pred HHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEE---EEeCCCCC-----CCHHHHHHHHhccCCCcEEEEecCC
Q 006661 47 RILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVV---LSDVHMPD-----MDGFKLLEHIGLEMDLPVIMMSADG 116 (636)
Q Consensus 47 e~L~~lL~~~-gy~V~-tasdg~eALe~Lre~k~~pDLV---IlDI~MPd-----mDG~ELLk~Ir~~~~iPVIILSa~~ 116 (636)
+.++.+-+.. +..+. .+.+.+++...... ..|+| +..+. +. ...++++++++.. ++|||...+-.
T Consensus 122 ~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~ 196 (234)
T 1yxy_A 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKIH 196 (234)
T ss_dssp HHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCCC
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCCC
Confidence 3444433332 44443 56777887666543 37887 33321 21 1246888888766 89999988888
Q ss_pred CHHHHHHHHHcCCCeEEeC
Q 006661 117 RVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 117 d~e~v~kAle~GA~DYLlK 135 (636)
+.+.+.++++.||+.++.=
T Consensus 197 s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 197 SPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp SHHHHHHHHTTCCSEEEEC
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 8999999999999987653
No 227
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=35.17 E-value=1.4e+02 Score=30.63 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=58.1
Q ss_pred CeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhccCCCcEEEEecCCCH-------------HHHH
Q 006661 58 YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLEMDLPVIMMSADGRV-------------SAVM 122 (636)
Q Consensus 58 y~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdm-DG~ELLk~Ir~~~~iPVIILSa~~d~-------------e~v~ 122 (636)
+.+. .+.+.++++...+...+.+.|. .++..++. -++.+++.+++..++||.+|.-.... +++.
T Consensus 40 ~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~ 118 (287)
T 3iwp_A 40 FLMEVCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIR 118 (287)
T ss_dssp SEEEEEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHH
Confidence 4443 5778888888777654333333 22233443 37889999887778999877654433 5677
Q ss_pred HHHHcCCCeEEeCC------CCHHHHHHHHHH
Q 006661 123 RGIRHGACDYLIKP------IREEELKNIWQH 148 (636)
Q Consensus 123 kAle~GA~DYLlKP------i~~eeLk~~Iq~ 148 (636)
.+.++||++++.=- ++.+.++.++..
T Consensus 119 ~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 119 LAKLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 88899999987763 455566665554
No 228
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=35.06 E-value=2.5e+02 Score=27.83 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=52.1
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 34 LRVLVV-DDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 34 lRVLIV-DDD~~~re~L~~lL~~~gy~V~tas--dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
++++++ .+++..++.+++++... -.|.... ...+..+++.. .|++++.- -|+ +++.+ ...+|+|
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~~----ad~~v~~S-----~g~-~lEA~--a~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMRA----SLLLVTDS-----GGL-QEEGA--ALGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHT----EEEEEESC-----HHH-HHHHH--HTTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHHh----CcEEEECC-----cCH-HHHHH--HcCCCEE
Confidence 455554 44454455555544321 1333331 22233333322 57776642 244 44544 3578998
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
+.......... ++.| .+++.. .+.++|.+.+.+++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 75433333222 4455 467774 499999999888874
No 229
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=34.91 E-value=1.4e+02 Score=28.59 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=47.3
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006661 33 GLRVLVVD------DDITCLRILEQMLRRCLYNVTTC----SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (636)
Q Consensus 33 glRVLIVD------DD~~~re~L~~lL~~~gy~V~ta----sdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir 102 (636)
+-||++|+ |.....+.+++.|++.|+++... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 57899996 44567788899999999998877 477777777765 577775 7788777777775
No 230
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=34.70 E-value=21 Score=33.64 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=33.8
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 34 LR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 34 lR-VLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
|| |+|||....+...+.++|++.|+.+..+...+..++.+.... +|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~--~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERID--PDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHC--CSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCC--CCEEEE
Confidence 46 999997766667788899998988776655422233333323 787777
No 231
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=33.78 E-value=1.3e+02 Score=29.79 Aligned_cols=90 Identities=8% Similarity=-0.003 Sum_probs=55.4
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcC
Q 006661 51 QMLRRCL-YNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (636)
Q Consensus 51 ~lL~~~g-y~V~tasdg~eALe~Lre~-k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~G 128 (636)
+.|.+.+ .-|....+.++++++++.. ....++|=+.+ -.-++.+.++++++...-.+|-...--+.+.+..|+++|
T Consensus 29 ~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~--~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AG 106 (232)
T 4e38_A 29 NQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITF--RSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG 106 (232)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEET--TSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcC
Confidence 3444433 3466777778887766542 22356555444 455789999999764322344444455789999999999
Q ss_pred CCeEEeCCCCHHHHH
Q 006661 129 ACDYLIKPIREEELK 143 (636)
Q Consensus 129 A~DYLlKPi~~eeLk 143 (636)
|+ |+.-|-...++.
T Consensus 107 A~-fIvsP~~~~~vi 120 (232)
T 4e38_A 107 AT-FVVSPGFNPNTV 120 (232)
T ss_dssp CS-EEECSSCCHHHH
T ss_pred CC-EEEeCCCCHHHH
Confidence 96 555564434443
No 232
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.78 E-value=95 Score=24.17 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=34.5
Q ss_pred CCCCcceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHH
Q 006661 218 TKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASH 267 (636)
Q Consensus 218 ~KKpRVvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVASH 267 (636)
.++....||.|=++.|.+++.+.| .+- .+|-.+ +|+-|..++..|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w--~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-KNF--GLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-TCH--HHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-CCH--HHHHHH--cCCCCHHHHHHH
Confidence 345566899999999999999998 222 467766 788888887654
No 233
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=33.08 E-value=1.9e+02 Score=28.72 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 105 ~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
..+|||........ .+.++.| .+++..| +.++|.+.+..++.
T Consensus 300 ~G~PvI~~~~~~~~---~e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTER---PEAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSC---HHHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCc---chhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 46898875432232 2335668 8899988 99999999988875
No 234
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=33.07 E-value=74 Score=24.50 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=35.5
Q ss_pred eecHHHHHHHHHHHHHhccCcccHHHHHHHhcCC-CCCHHHHHHHHHHHH
Q 006661 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVP-GLTRENVASHLQKFR 272 (636)
Q Consensus 224 vWt~ELH~kFv~AVnqLGidKAvPKkILelMnVp-gLTrenVASHLQKyR 272 (636)
.||.|-.+.++++|.+.|..+= ++|-+. ++ +-|..++..|-++|.
T Consensus 11 ~WT~eED~~L~~~v~~~G~~~W--~~IA~~--~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 11 NWGADEELLLIDACETLGLGNW--ADIADY--VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCH--HHHHHH--HCSSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCcCCH--HHHHHH--HCCCCCHHHHHHHHHHHc
Confidence 5999999999999999996542 467776 46 788888888866553
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=32.83 E-value=35 Score=31.49 Aligned_cols=100 Identities=19% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCCCCcccccccCCCCCCCccEEEEEeCCH-HHHHHHHHHHHhCCC---------eEEEECCHH---HHHHHHHHcCC-C
Q 006661 14 SGYGSSRAADVAVPDQFPAGLRVLVVDDDI-TCLRILEQMLRRCLY---------NVTTCSQAA---VALDILRERKG-C 79 (636)
Q Consensus 14 ~~~~s~~~~d~~~~d~fP~glRVLIVDDD~-~~re~L~~lL~~~gy---------~V~tasdg~---eALe~Lre~k~-~ 79 (636)
+|+|..+.+-.... +.+-+|++++-+. .....+..++...++ .+....+.. ..++.++.... .
T Consensus 29 ~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (220)
T 2cvh_A 29 YASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSN 105 (220)
T ss_dssp TTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTT
T ss_pred CCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcC
Confidence 46666543332222 4567888887654 112233344443332 223333332 24444443322 4
Q ss_pred ceEEEEeCCCCCCCH-----------HHHHHHH---hccCCCcEEEEecCC
Q 006661 80 FDVVLSDVHMPDMDG-----------FKLLEHI---GLEMDLPVIMMSADG 116 (636)
Q Consensus 80 pDLVIlDI~MPdmDG-----------~ELLk~I---r~~~~iPVIILSa~~ 116 (636)
+++||+|--....+. .++++.| ....+++||+++...
T Consensus 106 ~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~ 156 (220)
T 2cvh_A 106 FALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVH 156 (220)
T ss_dssp EEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEE
Confidence 999999974433332 2233333 234467888776543
No 236
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=32.27 E-value=1.4e+02 Score=31.62 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=62.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHH---cCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRE---RKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre---~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
.+||.||---..-...+..+....+++++ .|....+..+.+.+ ...-++.-+.+- ...| .+.+-...++-
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~----~~~ll~~~~vD 93 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDD----YKNMLKDKNID 93 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTT----HHHHTTCTTCC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCC----HHHHhcCCCCC
Confidence 58999998776666666555443467765 44433333333322 111112222210 1112 23332234555
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006661 109 VIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (636)
Q Consensus 109 VIILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vl 150 (636)
+|+++... ..+.+.+|+++|..=|+-||+ +.++..++++.+-
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~ 139 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSE 139 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 55555433 367788999999999999996 5778777776553
No 237
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=31.84 E-value=94 Score=30.78 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCceEEEEeCCC------CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHH
Q 006661 67 AVALDILRERKGCFDVVLSDVHM------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~M------PdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~e 140 (636)
++..+++.. .|++|+-... ++.-|..+++.+. ..+|||. |... ...+.+..| .+++..|-+.+
T Consensus 264 ~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~G~PvI~-~~~~---~~~e~i~~~-~g~~~~~~d~~ 332 (394)
T 3okp_A 264 QDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--CGVPVIA-GTSG---GAPETVTPA-TGLVVEGSDVD 332 (394)
T ss_dssp HHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--TTCCEEE-CSST---TGGGGCCTT-TEEECCTTCHH
T ss_pred HHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--cCCCEEE-eCCC---ChHHHHhcC-CceEeCCCCHH
Confidence 555555543 4777764333 1344566777663 4578876 3222 233445667 89999999999
Q ss_pred HHHHHHHHHHH
Q 006661 141 ELKNIWQHVVR 151 (636)
Q Consensus 141 eLk~~Iq~vlr 151 (636)
+|.+.+..++.
T Consensus 333 ~l~~~i~~l~~ 343 (394)
T 3okp_A 333 KLSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988874
No 238
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=31.84 E-value=2.6e+02 Score=26.53 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=62.3
Q ss_pred cccCCCCCCCccEEEEEeCCH--HHHHHHHHHHHhCCCeEEEECCH--------HHHH---HHHHHcCCCceEEEEeCCC
Q 006661 23 DVAVPDQFPAGLRVLVVDDDI--TCLRILEQMLRRCLYNVTTCSQA--------AVAL---DILRERKGCFDVVLSDVHM 89 (636)
Q Consensus 23 d~~~~d~fP~glRVLIVDDD~--~~re~L~~lL~~~gy~V~tasdg--------~eAL---e~Lre~k~~pDLVIlDI~M 89 (636)
.++...+-|..|||.|.-|+. ...+.|++.|++.+|+|..+... .-|. +.+.......-|+|+-
T Consensus 11 ~~~~~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCG--- 87 (166)
T 3s5p_A 11 TLEAQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCG--- 87 (166)
T ss_dssp --------CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEES---
T ss_pred ceeecCCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcC---
Confidence 344556678889999999995 77889999999999998754321 1122 2333333223466664
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCC---CCHHHHHHHHHHHHH
Q 006661 90 PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP---IREEELKNIWQHVVR 151 (636)
Q Consensus 90 PdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKP---i~~eeLk~~Iq~vlr 151 (636)
+|+-..=...+.+.+.--+.+ +...+..+.++.=...|.=+ +..+..+.++...+.
T Consensus 88 ---TGiG~sIaANKv~GIRAAlc~---d~~sA~laR~hNnANVL~lG~Rvig~~lA~~Iv~~fL~ 146 (166)
T 3s5p_A 88 ---TGIGISIAANKMKGIRCALCS---TEYDAEMARKHNNANALALGGRTTGPEVAASILSRFLS 146 (166)
T ss_dssp ---SSHHHHHHHHTSTTCCEEECS---SHHHHHHHHHTTCCCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHhhcCCCeEEEEeC---CHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHc
Confidence 343333222334454444332 34445555544333333333 456666666666654
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=31.75 E-value=74 Score=34.20 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=29.6
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHHcCCCceEEEEeC
Q 006661 33 GLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 33 glRVLIVDDD~---~~re~L~~lL~~~gy~V~tas---dg~----eALe~Lre~k~~pDLVIlDI 87 (636)
|.||++||-|+ ...+.+...-...+..+..+. +.. ++++.++.. .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 77889988885 223333333333355554432 222 334444433 389999998
No 240
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=31.67 E-value=75 Score=34.32 Aligned_cols=105 Identities=11% Similarity=0.207 Sum_probs=63.9
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEE---EE------------------------CCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006661 40 DDDITCLRILEQMLRRCLY--NVT---TC------------------------SQAAVALDILRERKGCFDVVLSDVHMP 90 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy--~V~---ta------------------------sdg~eALe~Lre~k~~pDLVIlDI~MP 90 (636)
+++....+.+++.++..|| +|. .+ -+..++++.+.+.-..++|+.+.==++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4566777888888876565 222 11 145776666543212378888876666
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecC---CCHHHHHHHHHcCCCeE-EeCCC---CHHHHHHHHH
Q 006661 91 DMDGFKLLEHIGLEMDLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPI---REEELKNIWQ 147 (636)
Q Consensus 91 dmDG~ELLk~Ir~~~~iPVIILSa~---~d~e~v~kAle~GA~DY-LlKPi---~~eeLk~~Iq 147 (636)
..| ++-.++|+....+||+ ... .+...+.++++.|++++ ++|+- ...+.+++..
T Consensus 297 ~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~~ia~ 357 (439)
T 2akz_A 297 QDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACK 357 (439)
T ss_dssp TTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHH
T ss_pred ccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHH
Confidence 544 5666666655566764 433 25688899999998887 56664 3344444443
No 241
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=31.67 E-value=3.6e+02 Score=26.40 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=59.3
Q ss_pred HHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHH
Q 006661 49 LEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (636)
Q Consensus 49 L~~lL~~~gy--~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir--~~~~iPVIILSa~~d~e~v~kA 124 (636)
+++.|..-.. .+....+..+.++.+... .+|.|++|..=.-.+--++...++ .....++++=+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 5556654322 233333445555655543 499999998544333323333332 2245678887777788889999
Q ss_pred HHcCCCeE-EeCCCCHHHHHHHHHH
Q 006661 125 IRHGACDY-LIKPIREEELKNIWQH 148 (636)
Q Consensus 125 le~GA~DY-LlKPi~~eeLk~~Iq~ 148 (636)
++.|++.. +.|--+.++++.+.+.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 99999875 3444578888665543
No 242
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=31.65 E-value=75 Score=32.84 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=43.4
Q ss_pred HHHHHHHHhccCCCcEEEEe--cCCCHHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHHH
Q 006661 94 GFKLLEHIGLEMDLPVIMMS--ADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRK 152 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILS--a~~d~e~v~kAle~GA~DYLlK-----Pi~~eeLk~~Iq~vlrk 152 (636)
.+++++++++..++|||++. .-.+.+.+.++++.|+++.++= --++....+.+..++..
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 37788888777889998873 3346889999999999998654 34577777666666543
No 243
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=31.57 E-value=74 Score=31.23 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=35.7
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 94 G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.+++++++++..++||++-.+-.+.+.+.+++..||+.++.=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 556888887666899999888888999999999999998864
No 244
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=31.43 E-value=1.5e+02 Score=29.38 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.++++++++..++||++=.+-.+.+.+.+++..||+..++=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57888888766889887666667899999999999998875
No 245
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=31.37 E-value=98 Score=28.92 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=44.1
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHc--CCCceEEEEeCCCC
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER--KGCFDVVLSDVHMP 90 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~--V-~tasdg~eALe~Lre~--k~~pDLVIlDI~MP 90 (636)
..++.+.+|.-||-++...+..++.+...+.. | ....++.+.+..+... ...+|+|++|....
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 78 RLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred HhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 34456789999999999999999988876542 4 3567777665544310 03599999996443
No 246
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=31.07 E-value=1.5e+02 Score=29.07 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=60.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy--~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
.++++|+.+.+ .+.+++++++.+. .|......++..+.+.. .|++++-.. .+.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~-~e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAY-QEAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccc-cCCcccHHHHHHH--CCCCEE
Confidence 35666665533 1344444444331 34433333334444433 477776432 2334566666663 457888
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEeC-CCCHHHHHHHHHHHHH
Q 006661 111 MMSADGRVSAVMRGIRHGACDYLIK-PIREEELKNIWQHVVR 151 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYLlK-Pi~~eeLk~~Iq~vlr 151 (636)
....... .+.+..|..+++.. |.+.++|.+.+..++.
T Consensus 299 ~~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 7433222 33455677889997 8999999999998875
No 247
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=30.95 E-value=75 Score=31.77 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCC----CCC-CHHHHHHHHhccC-CCcEEE-EecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 64 SQAAVALDILRERKGCFDVVLSDVHM----PDM-DGFKLLEHIGLEM-DLPVIM-MSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 64 sdg~eALe~Lre~k~~pDLVIlDI~M----Pdm-DG~ELLk~Ir~~~-~iPVII-LSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
.+..++++.+.+.. .|.+=+|++- |.. -|.++++.||+.. +.|+.+ +-..+-..++..+.++||+....-.
T Consensus 40 ~~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~ 117 (246)
T 3inp_A 40 ARLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHP 117 (246)
T ss_dssp GGHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECG
T ss_pred hhHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEcc
Confidence 34567788777643 5666666632 333 3889999998654 778765 4455556688888999998776655
Q ss_pred CCHHHHHHHHHHH
Q 006661 137 IREEELKNIWQHV 149 (636)
Q Consensus 137 i~~eeLk~~Iq~v 149 (636)
...+++.+.++.+
T Consensus 118 Ea~~~~~~~i~~i 130 (246)
T 3inp_A 118 EASEHIDRSLQLI 130 (246)
T ss_dssp GGCSCHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 4445566666654
No 248
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=30.73 E-value=3.2e+02 Score=28.42 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=70.8
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHH
Q 006661 34 LRVLVVDD--DI------------TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGF 95 (636)
Q Consensus 34 lRVLIVDD--D~------------~~re~L~~lL~~~gy--~V~tas--dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ 95 (636)
.+++|+.+ .+ ...+.+++++.+.+. .|.... +.++..+.+.......|++++-.. .+.-|+
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~-~Eg~~~ 373 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF-YEPFGL 373 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS-CBCCCS
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc-cCCCCc
Confidence 57888877 21 226778888877653 244333 346666666642000188776432 233456
Q ss_pred HHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 96 ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
.+++.+. ..+|||... .....+.+..|..+++..|-+.++|.+.+..++.
T Consensus 374 ~~lEAma--~G~PvI~s~----~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 374 APVEAMA--SGLPAVVTR----NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHHHHH--TTCCEEEES----SBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHHHHH--cCCCEEEec----CCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 6777663 467888642 2335566778888999999999999999988763
No 249
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=30.63 E-value=60 Score=32.92 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=40.8
Q ss_pred CccEEEEEeCC-----HHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHHcCCCceEEEEeCCCCCCC
Q 006661 32 AGLRVLVVDDD-----ITCLRILEQMLRRCL-YNVTTCSQAA-----VALDILRERKGCFDVVLSDVHMPDMD 93 (636)
Q Consensus 32 ~glRVLIVDDD-----~~~re~L~~lL~~~g-y~V~tasdg~-----eALe~Lre~k~~pDLVIlDI~MPdmD 93 (636)
+.+||||+... +.....|..+|++.+ |+|....+.. +.+. +.-..+|+||++..+...+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~ 72 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWP 72 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCC
Confidence 35899999762 667789999999887 9998887641 2221 1123499999988654443
No 250
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=30.57 E-value=2.6e+02 Score=26.69 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=49.0
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 27 ~d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~--V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
...+|.+.+|..||-++...+..+..+...+.. |. ...+..+.+..+. ....+|+|++|...+ +-..+++.+
T Consensus 82 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 82 ARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp HTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEECCchH--HHHHHHHHH
Confidence 345666789999999999999999999877643 43 5667766554331 112599999987432 333455555
No 251
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=30.42 E-value=3.2e+02 Score=29.26 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=62.0
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCCH
Q 006661 33 GLRVLVVDD----DITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (636)
Q Consensus 33 glRVLIVDD----D~~~re~L~~lL~~~-gy~V--~tasdg~eALe~Lre~k~~pDLVIlDI~MP-----------dmDG 94 (636)
|..+++++- .....+.++.+-+.. +..| ..+.+.++|..+.+ . .+|.|.+...-. +...
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~-~--G~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIK-A--GADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH-T--TCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH-c--CCCEEEEcCCCCccccccccCCCCccH
Confidence 445566532 234556666665554 4443 35677787755554 2 378888744311 1233
Q ss_pred HHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 95 FKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 95 ~ELLk~Ir---~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
++++..+. ...++|||.-..-.+...+.+++..||+...+
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 44444443 23579999988888999999999999987655
No 252
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=30.42 E-value=2.8e+02 Score=28.62 Aligned_cols=107 Identities=10% Similarity=0.055 Sum_probs=63.5
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD-~~~re~L~~lL~~~gy~V~-tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
.++++|+.+. ....+.++++..+.+-.|. ... ..++..+.+.. .|++++--. .+.-|+-+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 4566666543 3455666666665443342 222 22222344443 477666432 2333555666653 35787
Q ss_pred EEEecCCCHHHHHHHHHcC---------CCeEEeCCCCHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~G---------A~DYLlKPi~~eeLk~~Iq~vl 150 (636)
|... ..-..+.+..| ..+++..|-+.++|.+.+..++
T Consensus 394 I~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 394 LVRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EEES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred EECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 7532 23455667777 8999999999999999998887
No 253
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=29.83 E-value=1.1e+02 Score=32.73 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~MPdmD-G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+.++.+.+.. +|+|++|.....-. -.+++++++...++|||+=. -.+.+.+..+.++||+...+
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~-V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEee-cCCHHHHHHHHHcCCCEEEE
Confidence 45556555544 89999997654322 26788888765578887622 24577888999999998877
No 254
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=29.82 E-value=34 Score=34.48 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCcEEEEecC------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 95 FKLLEHIGLEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~------~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|++++++|.. +|+|+|+=. .-.....+|.++|+++.|+--+..+|... +....+
T Consensus 79 ~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~ 138 (252)
T 3tha_A 79 FELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECE 138 (252)
T ss_dssp HHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHH
T ss_pred HHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHH
Confidence 4555555533 899998743 34556788899999999998888887544 444433
No 255
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=29.69 E-value=2.8e+02 Score=24.39 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=45.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
.+|..+|-++...+..+..+...+. .+ ....+..+.+..+......+|+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999999888876653 23 35667776555443223459999998432234445556655
No 256
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=29.40 E-value=2.1e+02 Score=30.23 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=59.7
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCce--EE-EEeCCCCCCCHHHHHHHHhccCCC
Q 006661 33 GLRVLVVDDDITCL-RILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFD--VV-LSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 33 glRVLIVDDD~~~r-e~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pD--LV-IlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
.+||.||---..-+ ..+..+....+++++ .|....+..+.+.+....+. +. ..| .+.+-...++
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~-----------~~~ll~~~~v 151 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN-----------FDKIAKDPKI 151 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSS-----------GGGGGGCTTC
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCC-----------HHHHhcCCCC
Confidence 48999999877665 444444333356654 44433333333333211111 11 111 1222223445
Q ss_pred cEEEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006661 108 PVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (636)
Q Consensus 108 PVIILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vl 150 (636)
-+|+++... ..+.+.+|+++|..=|+-||+ +.++..++++.+-
T Consensus 152 D~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~ 198 (433)
T 1h6d_A 152 DAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 198 (433)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHH
T ss_pred CEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 566555443 367788899999988999996 6777777666553
No 257
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=28.87 E-value=2.3e+02 Score=26.65 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHc------------C-CCceEEEEeCCCCCCC
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER------------K-GCFDVVLSDVHMPDMD 93 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~gy~--V-~tasdg~eALe~Lre~------------k-~~pDLVIlDI~MPdmD 93 (636)
+|.+.+|..+|-++...+..++.+...++. | ....+..+.+..+... . ..+|+|++|...+.
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~-- 159 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN-- 159 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--
Confidence 455679999999999999999999877642 3 3567777766544321 1 35999999864332
Q ss_pred HHHHHHHH
Q 006661 94 GFKLLEHI 101 (636)
Q Consensus 94 G~ELLk~I 101 (636)
-.++++.+
T Consensus 160 ~~~~l~~~ 167 (239)
T 2hnk_A 160 YPNYYPLI 167 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 23444544
No 258
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=28.66 E-value=73 Score=34.39 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=60.5
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEE---EE-------------------------CCHHHHHHHHHHcCCCceEEEEeCCC
Q 006661 40 DDDITCLRILEQMLRRCLY--NVT---TC-------------------------SQAAVALDILRERKGCFDVVLSDVHM 89 (636)
Q Consensus 40 DDD~~~re~L~~lL~~~gy--~V~---ta-------------------------sdg~eALe~Lre~k~~pDLVIlDI~M 89 (636)
+++...++.+++.++..|| +|. .+ -+..++++.+...-.+++|+.+.==+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4566677788888876565 332 12 04577776544321237888887666
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEecCC---CHHHHHHHHHcCCCeE-EeCCC
Q 006661 90 PDMDGFKLLEHIGLEMDLPVIMMSADG---RVSAVMRGIRHGACDY-LIKPI 137 (636)
Q Consensus 90 PdmDG~ELLk~Ir~~~~iPVIILSa~~---d~e~v~kAle~GA~DY-LlKPi 137 (636)
+..| ++-.++|+....+||+ .... ......++++.|++++ ++|+-
T Consensus 299 ~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~ 347 (436)
T 2al1_A 299 AEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVN 347 (436)
T ss_dssp CTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHH
T ss_pred CCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechh
Confidence 6555 6666777655566764 4432 4688899999999887 56664
No 259
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=28.45 E-value=4.7e+02 Score=26.56 Aligned_cols=88 Identities=18% Similarity=0.034 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCeEE--EE---CCHHHHHHHHHHcCCCceEEEEeCC---------------------CCCCCHHHHH
Q 006661 45 CLRILEQMLRRCLYNVT--TC---SQAAVALDILRERKGCFDVVLSDVH---------------------MPDMDGFKLL 98 (636)
Q Consensus 45 ~re~L~~lL~~~gy~V~--ta---sdg~eALe~Lre~k~~pDLVIlDI~---------------------MPdmDG~ELL 98 (636)
..+.++.+-+.....|. .+ .+.++|..+.+ .. .|.|++.-+ ..+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~-~G--ad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYE-AG--AAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHH-HT--CSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH-cC--CCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 34555555444444333 23 46666655443 33 787777422 1134567777
Q ss_pred HHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 99 EHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 99 k~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+.++.. .++|||....-.+.+.+.+++..||+...+=
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 777543 4799999999999999999999999987654
No 260
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.42 E-value=74 Score=30.28 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=48.1
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHHcCCC
Q 006661 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGAC 130 (636)
Q Consensus 61 ~tasdg~eALe~Lre~k~~pDLVIlDI~MPd--------mDG~ELLk~Ir~~--~~iPVIILSa~~d~e~v~kAle~GA~ 130 (636)
..|.+.+++.+.. . ..|.|.++--.|. .-|++.++.+... .++|||.+-+-. .+.+.++++.||+
T Consensus 93 ~s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 93 CSCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EEECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred EecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 3677888876553 2 3799987754432 1267888888654 589999877655 6678889999999
Q ss_pred eEEe
Q 006661 131 DYLI 134 (636)
Q Consensus 131 DYLl 134 (636)
+.-.
T Consensus 168 gVav 171 (210)
T 3ceu_A 168 GAVV 171 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8744
No 261
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=27.96 E-value=58 Score=31.43 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHhCCCeEEE-E--CCHHHHHHHHHHcCCCceEEEEeCCCCCC-------CHHHHHHHHhccC-CCcEEEEecCCCHHH
Q 006661 52 MLRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEM-DLPVIMMSADGRVSA 120 (636)
Q Consensus 52 lL~~~gy~V~t-a--sdg~eALe~Lre~k~~pDLVIlDI~MPdm-------DG~ELLk~Ir~~~-~iPVIILSa~~d~e~ 120 (636)
.+++.+..+.. + .+..+.++.+.......|.|+++-..|+. .+++.++++++.. ++||++.-+-. .+.
T Consensus 108 ~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~-~~n 186 (228)
T 1h1y_A 108 SIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PST 186 (228)
T ss_dssp HHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCS-TTT
T ss_pred HHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcC-HHH
Confidence 33444555442 3 23334555444310027999998777653 2456667776544 77877655444 367
Q ss_pred HHHHHHcCCCeEEeC
Q 006661 121 VMRGIRHGACDYLIK 135 (636)
Q Consensus 121 v~kAle~GA~DYLlK 135 (636)
+.++++.||+.++.=
T Consensus 187 i~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 187 IDVAASAGANCIVAG 201 (228)
T ss_dssp HHHHHHHTCCEEEES
T ss_pred HHHHHHcCCCEEEEC
Confidence 778888899987654
No 262
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=27.82 E-value=3.2e+02 Score=27.32 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=60.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
..+||.||--=..-...+..+....+++++ .+....+..+.+.+.. .+. +..| .+.+-...++-+|
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-g~~-~~~~-----------~~~~l~~~~~D~V 69 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN-GAE-AVAS-----------PDEVFARDDIDGI 69 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT-TCE-EESS-----------HHHHTTCSCCCEE
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-CCc-eeCC-----------HHHHhcCCCCCEE
Confidence 357899988876666666655554467766 4444344444433321 111 1111 1223222344455
Q ss_pred EEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006661 111 MMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (636)
Q Consensus 111 ILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~v 149 (636)
+++... ..+.+.+|+++|..=++-||+ +.++..++++.+
T Consensus 70 ~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 70 VIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred EEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 554433 356788899999999999995 567777766554
No 263
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=27.52 E-value=53 Score=33.28 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 118 VSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 118 ~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
.+.+.+|+++|..=|+-||+ +.++..++++.+-+
T Consensus 81 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46688899999999999996 56788777766543
No 264
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=27.47 E-value=2.1e+02 Score=24.50 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=42.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasd-g~eALe~Lre~k~~pDLVIlDI~MPdm-DG~ELLk~Ir~~~~iPVI 110 (636)
|.+|.++|.++...+.++ ..++.+....- -.+.++.+ .....|+||+-+. +. .-..++..++......||
T Consensus 29 g~~V~~id~~~~~~~~~~----~~~~~~~~gd~~~~~~l~~~--~~~~~d~vi~~~~--~~~~n~~~~~~a~~~~~~~ii 100 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLE----DEGFDAVIADPTDESFYRSL--DLEGVSAVLITGS--DDEFNLKILKALRSVSDVYAI 100 (141)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEECCTTCHHHHHHS--CCTTCSEEEECCS--CHHHHHHHHHHHHHHCCCCEE
T ss_pred CCeEEEEECCHHHHHHHH----HCCCcEEECCCCCHHHHHhC--CcccCCEEEEecC--CHHHHHHHHHHHHHhCCceEE
Confidence 567888888876544433 23454443221 12223322 1124788877543 21 122233334433344555
Q ss_pred EEecCCCHHHHHHHHHcCCCeEE
Q 006661 111 MMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 111 ILSa~~d~e~v~kAle~GA~DYL 133 (636)
...... +......+.|++..+
T Consensus 101 a~~~~~--~~~~~l~~~G~~~vi 121 (141)
T 3llv_A 101 VRVSSP--KKKEEFEEAGANLVV 121 (141)
T ss_dssp EEESCG--GGHHHHHHTTCSEEE
T ss_pred EEEcCh--hHHHHHHHcCCCEEE
Confidence 544333 334455677875433
No 265
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=27.43 E-value=83 Score=33.96 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC-C--CHHHHHHHHHcCCCeE-EeCCC
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD-G--RVSAVMRGIRHGACDY-LIKPI 137 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~-~--d~e~v~kAle~GA~DY-LlKPi 137 (636)
+..+|++++++.-.+++++.+.==++..| ++-.++|+.....||-++... . ......++++.|++++ .+|+-
T Consensus 264 t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~ 339 (428)
T 3tqp_A 264 TSEEMIDRLTEWTKKYPVISIEDGLSEND-WAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLN 339 (428)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhhcccceEeCCCCccc-HHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEeccc
Confidence 66888887775112378888876666544 455556654444455444433 1 5778889999998886 56653
No 266
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=27.37 E-value=98 Score=31.88 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=46.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccC--CCcEEEEecCCCHHHHHHHHHcCCCeEEeCC
Q 006661 80 FDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (636)
Q Consensus 80 pDLVIlDI~MPdmDG~ELLk~Ir~~~--~iPVIILSa~~d~e~v~kAle~GA~DYLlKP 136 (636)
.+||.+|+-- .-...++++++++.. ++|+++=-+-.+.+.+.+++++||+..++-.
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999854 334468999997665 8999998888999999999999999988865
No 267
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=27.22 E-value=55 Score=32.57 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCC--CCCHHHHHHHHhccCCCcEEEEecC-CCHHHHHHHHHcCCCeEEe
Q 006661 67 AVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~MP--dmDG~ELLk~Ir~~~~iPVIILSa~-~d~e~v~kAle~GA~DYLl 134 (636)
.++++.+.+.. .|+|.+-+.-. -.+-+++++++|+ .++|+|+|+.. ... ..|++++|+
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 268
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=27.18 E-value=2.3e+02 Score=27.23 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=67.1
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC----C-CCCHHHHHHH
Q 006661 32 AGLRVLVVDDD----ITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEH 100 (636)
Q Consensus 32 ~glRVLIVDDD----~~~re~L~~lL~~~gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~M----P-dmDG~ELLk~ 100 (636)
..+.+=|-|.. ........+.|+..|+.+. .+..+...+..+.... +|.|=+|..+ . +.....+++.
T Consensus 123 ~~l~lEitE~~~~~~~~~~~~~l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~ 200 (259)
T 3s83_A 123 GALKLEVTESDIMRDPERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRS 200 (259)
T ss_dssp TSEEEEEEHHHHHHCHHHHHHHHHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHH
T ss_pred ceEEEEECCchhhhCHHHHHHHHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHH
Confidence 34555554432 2222333345566688765 4566777888888765 9999999632 1 1123334444
Q ss_pred H---hccCCCcEEEEecCCCHHHHHHHHHcCCCe----EEeCCCCHHHHHHHHH
Q 006661 101 I---GLEMDLPVIMMSADGRVSAVMRGIRHGACD----YLIKPIREEELKNIWQ 147 (636)
Q Consensus 101 I---r~~~~iPVIILSa~~d~e~v~kAle~GA~D----YLlKPi~~eeLk~~Iq 147 (636)
+ ....++.|| ...-.+.+....+.+.|++. |+.||...+++...++
T Consensus 201 i~~~a~~~g~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~ 253 (259)
T 3s83_A 201 VVKLGQDLDLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLN 253 (259)
T ss_dssp HHHHHHHTTCEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred HHHHHHHCCCeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHH
Confidence 4 233455554 45556677777777888863 4779999999877654
No 269
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=27.16 E-value=5.1e+02 Score=26.36 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCC--C------------HHHHHHHHhc
Q 006661 41 DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDM--D------------GFKLLEHIGL 103 (636)
Q Consensus 41 DD~~~re~L~~lL~~~-gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MPdm--D------------G~ELLk~Ir~ 103 (636)
+.....+.++.+-+.. +..|. .+.+.++|..+.+.- .|.|++..+ ++. + .++++.+++.
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 4456666777766665 33333 366788887766543 788887433 221 1 3667777765
Q ss_pred cCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 104 ~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
..++|||.-..-.+..++.+++..||+...+
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 5689999988888999999999999988654
No 270
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=26.83 E-value=4.1e+02 Score=27.53 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=55.6
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cC--CCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EM--DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 60 V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~---~~--~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
+.......+.++.+.... +|.|++|+.=.-.+--.+.+.++. .. ..++++=+...+...+..+++.|+...++
T Consensus 46 ~~l~i~~p~~~e~a~~~G--aD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gIml 123 (339)
T 1izc_A 46 VAHGIPSTFVTKVLAATK--PDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVI 123 (339)
T ss_dssp EEECSCCHHHHHHHHHTC--CSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCHHHHHHHHhCC--CCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEe
Confidence 333334445556555544 999999986444444344444432 11 26777777777888899999999987544
Q ss_pred -CCCCHHHHHHHHHHH
Q 006661 135 -KPIREEELKNIWQHV 149 (636)
Q Consensus 135 -KPi~~eeLk~~Iq~v 149 (636)
|--+.++++.+.+.+
T Consensus 124 P~V~saee~~~~~~~~ 139 (339)
T 1izc_A 124 PHVETVEEVREFVKEM 139 (339)
T ss_dssp TTCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 334788888766553
No 271
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=26.78 E-value=4.2e+02 Score=27.41 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=29.1
Q ss_pred cCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 104 ~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
...+|+|++-...+.. +.++.| ..++..+ +.++|...+..++.
T Consensus 318 a~g~PvV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 318 GMGVPVLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp GTTCCEEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred HhCCCEEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 3578998863323322 245677 5677766 89999999988874
No 272
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=26.46 E-value=1.2e+02 Score=29.89 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=51.2
Q ss_pred HHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEeCCCCCCCH-------HHHHHHHhccC-CCcEEEEecCCCHHH
Q 006661 52 MLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLEM-DLPVIMMSADGRVSA 120 (636)
Q Consensus 52 lL~~~gy~V~tasdg---~eALe~Lre~k~~pDLVIlDI~MPdmDG-------~ELLk~Ir~~~-~iPVIILSa~~d~e~ 120 (636)
.+++.|..+..+-+. .+.++.+... ..+|+|++=.--|+.+| ++-++++++.. +++ |.+.+--+.+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHH
Confidence 666778777655443 3444433331 03788876554565444 55566665433 443 55667777889
Q ss_pred HHHHHHcCCCeEEeC
Q 006661 121 VMRGIRHGACDYLIK 135 (636)
Q Consensus 121 v~kAle~GA~DYLlK 135 (636)
+.++.++||+-++.=
T Consensus 187 i~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 187 TEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHTCCEEEES
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999987654
No 273
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=26.01 E-value=25 Score=35.81 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=32.6
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEE---CCHH----HHHHHHHHcCCCceEEEEeC
Q 006661 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTC---SQAA----VALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 32 ~glRVLIVDDD~---~~re~L~~lL~~~gy~V~ta---sdg~----eALe~Lre~k~~pDLVIlDI 87 (636)
.+.+|+++|-|. ...+.++.+....+..+... .+.. ++++.++.. .+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 467899999983 44444555555556665543 2333 344444423 489999997
No 274
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=25.69 E-value=4.8e+02 Score=25.78 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=56.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
+||.||---..-...+..+....++++. .+....+..+.+.+.. ...-+..| --++ + ..++-+|++
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~~-------~~~~---l--~~~~D~V~i 68 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY-QNIQLFDQ-------LEVF---F--KSSFDLVYI 68 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGS-SSCEEESC-------HHHH---H--TSSCSEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-CCCeEeCC-------HHHH---h--CCCCCEEEE
Confidence 6777777666555555555444456654 4443333333333221 11111212 1122 2 234455555
Q ss_pred ecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006661 113 SADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (636)
Q Consensus 113 Sa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~v 149 (636)
+... ..+.+.+|+++|..=|+-||+ +.++..++++.+
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a 109 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTA 109 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH
Confidence 5443 357788899999988999996 677777766654
No 275
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=25.39 E-value=2e+02 Score=24.82 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=64.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC-cE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL-PV 109 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~t-asdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i-PV 109 (636)
..++++|+.+.+. .+.++.++.+.+..|.. .-+.++..+++.. .|++++-.. .+.-|..+++.+. ..+ ||
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 4678888877543 46677777766655543 2224455455432 688887443 3444677777764 455 88
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
|..+..... .+.+..+ .++..|-+.++|...+.+++.
T Consensus 103 i~~~~~~~~---~~~~~~~--~~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 103 IANSPLSAT---RQFALDE--RSLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EECCTTCGG---GGGCSSG--GGEECTTCHHHHHHHHHHHHH
T ss_pred EeeCCCCch---hhhccCC--ceEEcCCCHHHHHHHHHHHHh
Confidence 873322222 1222333 338888999999999998875
No 276
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=25.38 E-value=1.5e+02 Score=31.36 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=32.1
Q ss_pred cccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe-EEE-----------------ECCHHHHHHHHHHcCCCceEEE
Q 006661 23 DVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN-VTT-----------------CSQAAVALDILRERKGCFDVVL 84 (636)
Q Consensus 23 d~~~~d~fP~glRVLIVDDD~~~re~L~~lL~~~gy~-V~t-----------------asdg~eALe~Lre~k~~pDLVI 84 (636)
+++....-|..|||||+...-........+.+..+.. |.. ..+.+..++.+++.. +|+|+
T Consensus 11 ~~~~~~~~p~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a~~~~--id~vv 88 (442)
T 3lp8_A 11 TLEAQTQGPGSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKEK--IELVV 88 (442)
T ss_dssp ---------CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHTT--CCEEE
T ss_pred ceecccCCCCCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHHHHhC--CCEEE
Confidence 3444566788899999999854433333333332322 222 125566677777655 99999
Q ss_pred EeC
Q 006661 85 SDV 87 (636)
Q Consensus 85 lDI 87 (636)
...
T Consensus 89 ~g~ 91 (442)
T 3lp8_A 89 IGP 91 (442)
T ss_dssp ECS
T ss_pred ECC
Confidence 753
No 277
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=25.30 E-value=4.2e+02 Score=26.62 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=62.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
..+||.||---..-...+..+... .+++++ .+....+..+.+.+. +.+-..+ |--++++ ..++-+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~~~~~~~------~~~~ll~----~~~~D~ 78 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---TGARGHA------SLTDMLA----QTDADI 78 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---HCCEEES------CHHHHHH----HCCCSE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---cCCceeC------CHHHHhc----CCCCCE
Confidence 458999998776666666666555 467765 444333433333322 2221211 2222332 234555
Q ss_pred EEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 110 IMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
|+++... ..+.+.+|+++|..=|+-||+ +.++..++++.+-+
T Consensus 79 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 5554443 356788999999999999995 67777777765543
No 278
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=25.26 E-value=3.9e+02 Score=27.43 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=48.4
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC--CCCH----------HHHHHHH----h-ccCCCcEEEEe-cCCCHH
Q 006661 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMP--DMDG----------FKLLEHI----G-LEMDLPVIMMS-ADGRVS 119 (636)
Q Consensus 58 y~V~tasdg~eALe~Lre~k~~pDLVIlDI~MP--dmDG----------~ELLk~I----r-~~~~iPVIILS-a~~d~e 119 (636)
+.+..+.+.++|..+.... ||+|++..-+. +.-| .+.++.+ + ..+++.|+.-. .-...+
T Consensus 165 ~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpe 241 (286)
T 2p10_A 165 LTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPE 241 (286)
T ss_dssp EECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHH
T ss_pred eEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHH
Confidence 4566888999999887653 89999864321 3222 3344443 1 23555333333 346788
Q ss_pred HHHHHHHc--CCCeEEeCC
Q 006661 120 AVMRGIRH--GACDYLIKP 136 (636)
Q Consensus 120 ~v~kAle~--GA~DYLlKP 136 (636)
++..+++. |+++|+.-.
T Consensus 242 Dv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 242 DARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHHHHHCTTCCEEEESH
T ss_pred HHHHHHhcCCCccEEEeeh
Confidence 99999999 999999864
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=25.05 E-value=98 Score=31.25 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=30.5
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC
Q 006661 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (636)
Q Consensus 32 ~glRVLIVDDD~~---~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmD 93 (636)
.|.+|+++|-|.. ..+.+..+....+..+....+..+.-..+... ..+|+||+| .++.+
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 4678888888752 22333333333343333333443332333322 348999999 45544
No 280
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.88 E-value=2.8e+02 Score=26.20 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCC
Q 006661 44 TCLRILEQMLRRCLYNVTTCSQ---AA---VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADG 116 (636)
Q Consensus 44 ~~re~L~~lL~~~gy~V~tasd---g~---eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~ 116 (636)
.+...+++.+.+.||.+..+.. .. +.++.+.... +|-||+--..+ -+.++.+. ...+|+|++....
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~~~ 95 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN----PQTVQEIL-HQQMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC----HHHHHHHH-TTSSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc----HHHHHHHH-HCCCCEEEEeccc
Confidence 3455666677778998876542 22 3455555444 89877753322 55666664 3589999886543
No 281
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=24.87 E-value=5.5e+02 Score=25.91 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=63.5
Q ss_pred CccEEEEEeCCHHHH-HHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006661 32 AGLRVLVVDDDITCL-RILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~r-e~L~~lL~~~gy~V~-tas-dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iP 108 (636)
..+||.||---..-. ..+..+....+++++ .++ +.+.+-+..+... ...+ .|+ +.+-...++-
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~-----------~~ll~~~~~D 91 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY-----------PALLERDDVD 91 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH-----------HHHHTCTTCS
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH-----------HHHhcCCCCC
Confidence 358999999887766 345554444467765 333 4444444444332 2222 332 2222234455
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 109 VIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 109 VIILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
+|+++... -.+.+.+|+++|..=++-||+ +.++..++++.+-+
T Consensus 92 ~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 92 AVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55554433 457788999999999999996 67788777766543
No 282
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=24.72 E-value=4.9e+02 Score=26.02 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=61.2
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCC--eEEEEC-----CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006661 33 GLRVLVVDDD----ITCLRILEQMLRRCLY--NVTTCS-----QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (636)
Q Consensus 33 glRVLIVDDD----~~~re~L~~lL~~~gy--~V~tas-----dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I 101 (636)
.++++|+-+. +...+.++++.+..+. .|.... +.++..+.+.. .|++++--. .+.-|.-+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~-~E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSI-REGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCS-SCSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCC-cCCCccHHHHHH
Confidence 4667777664 3334445555444322 333322 12344444443 477665332 233455666666
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 102 r~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
. ..+|||... .....+.+..|..+++.. +.++|.+.+..++.
T Consensus 337 a--~G~PvI~~~----~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGRA----VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEES----CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEcc----CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 3 467887632 234556677788999996 89999999988764
No 283
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=24.36 E-value=1.3e+02 Score=31.90 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eE-EEECCHHHHHHHHHHcCCCceEEEEeCCC
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCL---Y------NV-TTCSQAAVALDILRERKGCFDVVLSDVHM 89 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~g---y------~V-~tasdg~eALe~Lre~k~~pDLVIlDI~M 89 (636)
-+|.+||=|+...+..++.+.... + .+ ....|+.+.++.+......||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999988875321 1 23 35778888777653223459999999754
No 284
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=24.25 E-value=4.6e+02 Score=26.91 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 95 ~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL 133 (636)
+++++.|++..++|||..-...+.+.+.++++.|..|.+
T Consensus 266 ~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 266 VPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEE
Confidence 678888887778999988887889999999999955543
No 285
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=24.21 E-value=14 Score=40.49 Aligned_cols=100 Identities=10% Similarity=-0.086 Sum_probs=54.5
Q ss_pred ChHHHHHHHHcCCC--------CCCC-cccccccCC----------------CCCCCccEEEEE--eCCHHHHHHHHHHH
Q 006661 1 MAALQRIVQSSGGS--------GYGS-SRAADVAVP----------------DQFPAGLRVLVV--DDDITCLRILEQML 53 (636)
Q Consensus 1 l~~~~~~~~~~gG~--------~~~s-~~~~d~~~~----------------d~fP~glRVLIV--DDD~~~re~L~~lL 53 (636)
|++++.+++++||. +.+. .+.+.+.++ ...+.|-+|.|. ++.......+..+|
T Consensus 113 L~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~~~~I~~~l 192 (471)
T 1mu5_A 113 VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYI 192 (471)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcCCcchHHHHHHHHH
Confidence 57899999999995 3333 333333322 133556665543 33333334555555
Q ss_pred HhC-----CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006661 54 RRC-----LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (636)
Q Consensus 54 ~~~-----gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir 102 (636)
.+. ++.+....++.+++...+....-|+. .+..||.++|+++...++
T Consensus 193 ~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~ 244 (471)
T 1mu5_A 193 KRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKI 244 (471)
T ss_dssp HHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHH
T ss_pred HHHHhHCCCeEEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHH
Confidence 442 55666665544433332211111332 567899999988877664
No 286
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.97 E-value=1.1e+02 Score=25.15 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=32.4
Q ss_pred eecHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHH
Q 006661 224 VWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASH 267 (636)
Q Consensus 224 vWt~ELH~kFv~AVnqLGidKAvP---KkILelMnVpgLTrenVASH 267 (636)
.||.+=.+.|..|+.....+ .| .+|.+. ||+-|.++|..|
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~--tp~rWe~IA~~--V~gKT~eE~~~h 52 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKH--KPGFWSEVAAA--VGSRSPEECQRK 52 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSS--SSSHHHHHHHH--TTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCC--CccHHHHHHHH--cCCCCHHHHHHH
Confidence 59999999999999987643 55 356655 899999999877
No 287
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=23.88 E-value=98 Score=30.81 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC------HHHHHHHHhccCCCcEEEEecC-CCHHHHHHHHHcCCCeEEe
Q 006661 67 AVALDILRERKGCFDVVLSDVHMPDMD------GFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~MPdmD------G~ELLk~Ir~~~~iPVIILSa~-~d~e~v~kAle~GA~DYLl 134 (636)
.++++.+.+.. .|+|.+-+ -+ .+++++++|+ .++|+|+++.. ... ..|++.||+
T Consensus 23 ~~~~~~l~~~G--aD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i-------~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI-------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC-------CSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccc-------cCCCCEEEE
No 288
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=23.71 E-value=1.4e+02 Score=30.57 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHhccCCCcEEEEecCCCHHHHHH-HHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006661 97 LLEHIGLEMDLPVIMMSADGRVSAVMR-GIRHGACDYLIKPIREEELKNIWQHVVR 151 (636)
Q Consensus 97 LLk~Ir~~~~iPVIILSa~~d~e~v~k-Ale~GA~DYLlKPi~~eeLk~~Iq~vlr 151 (636)
+++.+ ...+|||.-+.......+.+ ..+.| ++..+-+.++|.+.+.+++.
T Consensus 295 ~lEAm--A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 295 LLEPT--CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp CHHHH--TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred HHHHH--HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 44444 25688885222233333333 23444 56667789999999988875
No 289
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=23.69 E-value=2.9e+02 Score=23.82 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=42.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir 102 (636)
+|..+|-++...+..+..+...+..+. ...+..+.+..+......+|+|++|.-.. .+--++++.+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 499999999999998888876553433 45666665554443223499999984322 23334555553
No 290
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=23.47 E-value=3.4e+02 Score=28.28 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCH-HHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 67 AVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~MPdmDG-~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+.++.+.+.. +|+|.+|....+... ++.++++++..++|||+-. -.+.+.+..+.++||+...+
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 45555555443 899998865443322 4677777665578887622 24677888999999987765
No 291
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=23.46 E-value=1.9e+02 Score=25.68 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=37.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
.+.+|.++..... ..+|...+..+..+.+..++++++...+ .|.++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecH
Confidence 4678888777652 3445556788889999999999998755 99999973
No 292
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=23.29 E-value=3.5e+02 Score=27.95 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-IKPIREEELK 143 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYL-lKPi~~eeLk 143 (636)
+..+|+++++... .+++..++-=++..| ++.+++|+....+||+.==.-.+.....++++.|+.|++ +|+...-=|.
T Consensus 209 ~~~~a~~~~~~l~-~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 286 (372)
T 3tj4_A 209 DLPTCQRFCAAAK-DLDIYWFEEPLWYDD-VTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGIT 286 (372)
T ss_dssp CHHHHHHHHHHTT-TSCEEEEESCSCTTC-HHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHh-hcCCCEEECCCCchh-HHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 5778888777653 467777775555433 666777766667887764344466778889999988765 7776644443
Q ss_pred H
Q 006661 144 N 144 (636)
Q Consensus 144 ~ 144 (636)
.
T Consensus 287 ~ 287 (372)
T 3tj4_A 287 E 287 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 293
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=23.29 E-value=2.7e+02 Score=24.86 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=47.5
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006661 38 VVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (636)
Q Consensus 38 IVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILS 113 (636)
++|.+..+...|..+|....-.=....-..++++.++..+ ..|||+--+-...+-...+..+-...++|++++.
T Consensus 1 ~~~~~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gk--a~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 1 MADQNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQ--ALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVP 74 (126)
T ss_dssp --CCTHHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTC--CSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEES
T ss_pred CCcccccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCC--ceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 4677888888888888764211112335567888887765 7888886655334445556666566789998764
No 294
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=23.21 E-value=69 Score=30.17 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=33.7
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 79 CFDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 79 ~pDLVIlDI~MPdmDG-------~ELLk~Ir~~-----~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
..|.|+++...|+.+| ++-++.+++. .++|+++.-+ -..+.+.++.+.||+..+.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG-I~~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGG-VDNKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESS-CCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECc-CCHHHHHHHHHcCCCEEEE
Confidence 3688888776665443 2334444421 2567665443 3456677788889988755
No 295
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=23.07 E-value=2.3e+02 Score=22.90 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=32.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~g-y~V~tasdg~eALe~Lre~k~~pDLVIlDI~ 88 (636)
.+++|+|+---..-+. +...|...+ ++|..+....+.++.+... ....+..|+.
T Consensus 4 ~~~~v~I~G~G~iG~~-~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~ 58 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQM-IAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAK 58 (118)
T ss_dssp TCEEEEEECCSHHHHH-HHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTT
T ss_pred CcCeEEEECCCHHHHH-HHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCC
Confidence 3578999988544444 444455557 8887666555555555432 3566666653
No 296
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=23.03 E-value=1.5e+02 Score=31.54 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=53.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg--~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~-~~~iP 108 (636)
.|+.|++||.|+...+.++ ..++.+.. .|+ .+.|+.+. -...|+||+-+.-+ ..-..++..++. .++++
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi~-GDat~~~~L~~ag--i~~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVFY-GDATRMDLLESAG--AAKAEVLINAIDDP-QTNLQLTEMVKEHFPHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCEE-SCTTCHHHHHHTT--TTTCSEEEECCSSH-HHHHHHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEE-cCCCCHHHHHhcC--CCccCEEEECCCCh-HHHHHHHHHHHHhCCCCe
Confidence 3678999999987665544 34666543 222 23343332 22478888865321 122334444443 45677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
||+.+. +.+......++||+..+.
T Consensus 98 Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 98 IIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 777654 455666777899987664
No 297
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=22.78 E-value=3.9e+02 Score=29.45 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCCC-C--HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHH-cCCCeEEe------
Q 006661 66 AAVALDILRERKGCFD-VVLSDVHMPDM-D--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR-HGACDYLI------ 134 (636)
Q Consensus 66 g~eALe~Lre~k~~pD-LVIlDI~MPdm-D--G~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle-~GA~DYLl------ 134 (636)
..+..+.+.+.. .+ +++.|+.-.++ . -++++++++...++|||.-..-.+.+.+.++++ .|+++.+.
T Consensus 454 ~~e~a~~~~~~G--a~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEALG--AGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHHTT--CCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHHcC--CCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 344444444432 45 55556633221 2 278899998777899998777788899999998 79998655
Q ss_pred CCCCHHHHHHHH
Q 006661 135 KPIREEELKNIW 146 (636)
Q Consensus 135 KPi~~eeLk~~I 146 (636)
.++...++++.+
T Consensus 532 ~~~~~~e~~~~l 543 (555)
T 1jvn_A 532 GEFTVNDVKEYL 543 (555)
T ss_dssp TSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 367777776643
No 298
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=22.67 E-value=5.9e+02 Score=26.11 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=61.6
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHh--------CCCeEE-EECCHHH-HHHHHHHcCCCceEEEEeCCCCCCCHHHH
Q 006661 28 DQFPAGLRVLVVDDDITCLRILEQMLRR--------CLYNVT-TCSQAAV-ALDILRERKGCFDVVLSDVHMPDMDGFKL 97 (636)
Q Consensus 28 d~fP~glRVLIVDDD~~~re~L~~lL~~--------~gy~V~-tasdg~e-ALe~Lre~k~~pDLVIlDI~MPdmDG~EL 97 (636)
..+.++|||-||-==..-+..+..+.+. .+.+|+ .|+...+ |-+..++.. ..-+..|+
T Consensus 21 ~~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~--~~~~y~d~---------- 88 (412)
T 4gqa_A 21 QSMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLG--AEKAYGDW---------- 88 (412)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHT--CSEEESSH----------
T ss_pred ccccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcC--CCeEECCH----------
Confidence 3456679999998765544444444321 134554 4443333 333333332 22233332
Q ss_pred HHHHhccCCCcEEEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 98 LEHIGLEMDLPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 98 Lk~Ir~~~~iPVIILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
+.+-..+++-+|+++... -.+.+.+|+++|..=|+-||+ +.++..++++.+-+
T Consensus 89 -~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 145 (412)
T 4gqa_A 89 -RELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARR 145 (412)
T ss_dssp -HHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHH
T ss_pred -HHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHH
Confidence 222223455555554443 357889999999999999995 67888887776543
No 299
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=22.57 E-value=4.2e+02 Score=24.35 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=48.6
Q ss_pred EEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-C-CCcEEEEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 61 TTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 61 ~tasdg~eALe~Lre~-k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~-~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
....+.+++.+.++.. ...+|+|-+.+..| ++.+.++.+++. + +. +|-+..-.+.+.+.++.+.||+.. .-|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~ 91 (205)
T 1wa3_A 16 LRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPH 91 (205)
T ss_dssp ECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSS
T ss_pred EecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcCCCEE-EcCC
Confidence 3455666666655432 12378776655544 577778888654 2 33 333434456778899999998655 6676
Q ss_pred CHHHHHHH
Q 006661 138 REEELKNI 145 (636)
Q Consensus 138 ~~eeLk~~ 145 (636)
...++.+.
T Consensus 92 ~~~~~~~~ 99 (205)
T 1wa3_A 92 LDEEISQF 99 (205)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 55544443
No 300
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=22.56 E-value=3e+02 Score=29.10 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=49.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCC
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~---V~-tasdg~eALe-~Lre~k~~pDLVIlDI~MPdmDG~ELLk~I-r~~~~i 107 (636)
-+|..+|-++...+.+++-++..+.. +. ...|+.+.+. .+ ...||+|++|- ++.. .++++.+ +....-
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP--FGTP-VPFIESVALSMKRG 151 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC--SSCC-HHHHHHHHHHEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC--CcCH-HHHHHHHHHHhCCC
Confidence 47999999999999999999987652 43 5566666554 22 23599999997 3321 2344443 211122
Q ss_pred cEEEEecCC
Q 006661 108 PVIMMSADG 116 (636)
Q Consensus 108 PVIILSa~~ 116 (636)
-++++|..+
T Consensus 152 Gll~~t~t~ 160 (392)
T 3axs_A 152 GILSLTATD 160 (392)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEecc
Confidence 366677644
No 301
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=22.55 E-value=79 Score=31.11 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=58.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCC---------CCCCCHHHHHHHH
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVH---------MPDMDGFKLLEHI 101 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~t--asdg~eALe~Lre~k~~pDLVIlDI~---------MPdmDG~ELLk~I 101 (636)
.++++|+.+.+ ..+.++++.+..+-.|.. .-+..+..+.+.. .|++++-.. -.+.-|..+++.+
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAm 262 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAA 262 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHH
Confidence 34566665432 222333333332222322 2234444555543 477766432 1233456677766
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHHc--CCCeEEeCCCCHHHHHHHHHHHH
Q 006661 102 GLEMDLPVIMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVV 150 (636)
Q Consensus 102 r~~~~iPVIILSa~~d~e~v~kAle~--GA~DYLlKPi~~eeLk~~Iq~vl 150 (636)
. ..+|||..-. ....+.++. |..+++..| +.++|.+.+.+++
T Consensus 263 a--~G~PvI~s~~----~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 263 V--SGTPVVGTGN----GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp H--TTCCEEECCT----TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred h--cCCCEEEcCC----CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 3 4678875322 235566777 888999999 9999998887654
No 302
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=22.37 E-value=4.5e+02 Score=27.15 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCCceEEEEeCC--------CCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 66 AAVALDILRERKGCFDVVLSDVH--------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 66 g~eALe~Lre~k~~pDLVIlDI~--------MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.++++++++.....+|.|-+... .+..--+++++.|++..++|||..-...+.+.+.++++.|.+|++-
T Consensus 229 ~~~~~~~a~~l~~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~ 305 (343)
T 3kru_A 229 IDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVA 305 (343)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhhccccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHH
Confidence 46666666543322665554211 1111235778888766679999887778899999999999777654
No 303
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=22.27 E-value=5.4e+02 Score=26.03 Aligned_cols=107 Identities=12% Similarity=0.216 Sum_probs=62.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceE-EEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDV-VLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasdg~eALe~Lre~k~~pDL-VIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
.+||.||---..-...+..+... .+++++ .+....+..+.+.+.. .++. +..| --++++ ..++-+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-g~~~~~~~~-------~~~ll~----~~~~D~ 90 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY-AIEAKDYND-------YHDLIN----DKDVEV 90 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH-TCCCEEESS-------HHHHHH----CTTCCE
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh-CCCCeeeCC-------HHHHhc----CCCCCE
Confidence 47999999887777777666633 467765 3443333333332221 1111 2222 122222 234445
Q ss_pred EEEecC--CCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 110 IMMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~--~d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
|+++.. ...+.+.+|+++|..=|+-||+ +.++..++++.+-+
T Consensus 91 V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 136 (357)
T 3ec7_A 91 VIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQK 136 (357)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHH
Confidence 554433 3467788999999999999996 67888877776543
No 304
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=22.25 E-value=2.7e+02 Score=28.93 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCCC
Q 006661 47 RILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLE--MDLPVIMMSADGR 117 (636)
Q Consensus 47 e~L~~lL~~~gy~V~--tasdg~eALe~Lre~k~~pDLVIlDI~MP-----dmDG~ELLk~Ir~~--~~iPVIILSa~~d 117 (636)
+.++.+-+..+..|. .+.+.++|..+.+. ..|.|.+.-+-. ...-++++..++.. .++|||.-..-.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 445555555554443 45677777665543 379888754221 12356677777543 2799999999999
Q ss_pred HHHHHHHHHcCCCeEEeC
Q 006661 118 VSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 118 ~e~v~kAle~GA~DYLlK 135 (636)
.+.+.+++..||+...+=
T Consensus 292 ~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 292 GTDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEeec
Confidence 999999999999987653
No 305
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=22.04 E-value=1.9e+02 Score=28.30 Aligned_cols=55 Identities=20% Similarity=0.018 Sum_probs=36.8
Q ss_pred ccEEEEEeCC--------------------HHHHHHHHHHHHhCCCeEEEECCHH-----------------HHHHHHHH
Q 006661 33 GLRVLVVDDD--------------------ITCLRILEQMLRRCLYNVTTCSQAA-----------------VALDILRE 75 (636)
Q Consensus 33 glRVLIVDDD--------------------~~~re~L~~lL~~~gy~V~tasdg~-----------------eALe~Lre 75 (636)
+||||++-.. ......+.+.|.+.|++|..+.... ...+.+++
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 3789998776 2455567777777799988665432 34556665
Q ss_pred cCCCceEEEEeCCC
Q 006661 76 RKGCFDVVLSDVHM 89 (636)
Q Consensus 76 ~k~~pDLVIlDI~M 89 (636)
.+ ||+|++-...
T Consensus 83 ~~--~Dvi~~~~~~ 94 (342)
T 2iuy_A 83 AD--VDVVHDHSGG 94 (342)
T ss_dssp CC--CSEEEECSSS
T ss_pred cC--CCEEEECCch
Confidence 54 8988886544
No 306
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=22.01 E-value=4.2e+02 Score=26.98 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=59.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECC-HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasd-g~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVI 110 (636)
.+||.||-=-..-...+...+...+++++ .|.. .+.+-+..++.. ..-+..| .+.+-..+++-+|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~vD~V 92 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA--DARRIAT-----------AEEILEDENIGLI 92 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS--SCCEESC-----------HHHHHTCTTCCEE
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCCEE
Confidence 58999997553333334444445677765 4443 333333333321 1111222 2233223445555
Q ss_pred EEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006661 111 MMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (636)
Q Consensus 111 ILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~v 149 (636)
+++... -.+.+.+|+++|..=|+-||+ +.++..++++.+
T Consensus 93 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 93 VSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 554443 457788999999999999996 678887777654
No 307
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=21.90 E-value=2.2e+02 Score=28.39 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCCCCH-----------HHHHHHHhccCCCcEEE-EecCCCHHH----HHHHHHcCC
Q 006661 67 AVALDILRERKGCFD-VVLSDVHMPDMDG-----------FKLLEHIGLEMDLPVIM-MSADGRVSA----VMRGIRHGA 129 (636)
Q Consensus 67 ~eALe~Lre~k~~pD-LVIlDI~MPdmDG-----------~ELLk~Ir~~~~iPVII-LSa~~d~e~----v~kAle~GA 129 (636)
.++.+.+.+. .+| .|-+.+.-|...| .++++.+++..++||++ ++..-+.+. +..+.++|+
T Consensus 109 ~~~a~~~~~~--g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~ 186 (311)
T 1jub_A 109 IAMLKKIQES--DFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPL 186 (311)
T ss_dssp HHHHHHHHHS--CCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhc--CCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 3444445443 378 8888775454321 46677777666789887 554433322 445557787
Q ss_pred CeEEe
Q 006661 130 CDYLI 134 (636)
Q Consensus 130 ~DYLl 134 (636)
+...+
T Consensus 187 d~i~v 191 (311)
T 1jub_A 187 TYVNS 191 (311)
T ss_dssp CEEEE
T ss_pred cEEEe
Confidence 76554
No 308
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=21.83 E-value=4.7e+02 Score=25.97 Aligned_cols=106 Identities=10% Similarity=0.157 Sum_probs=58.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHH-HhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 32 AGLRVLVVDDDITCLRILEQML-RRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL-~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
..+||.||--=..-...+..+. ...+++++ .+....+.++.+.+.. ..+-+..| .+.+-...++-+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-g~~~~~~~-----------~~~~l~~~~~D~ 74 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-GVETTYTN-----------YKDMIDTENIDA 74 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-CCSEEESC-----------HHHHHTTSCCSE
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-CCCcccCC-----------HHHHhcCCCCCE
Confidence 4589999987655555555544 23467654 4444444444443321 12222222 122212234555
Q ss_pred EEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006661 110 IMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (636)
Q Consensus 110 IILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~v 149 (636)
|+++... ..+.+.++++.|..=++-||+ +.++..++++.+
T Consensus 75 V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 75 IFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred EEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 5554433 357788899999888889996 567766655543
No 309
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=21.80 E-value=6.1e+02 Score=25.37 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=58.9
Q ss_pred CccEEEEEeCC-HHHHHHHHHHHHh-CCCeEE-EECCHHHHHHH-HHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 32 AGLRVLVVDDD-ITCLRILEQMLRR-CLYNVT-TCSQAAVALDI-LRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 32 ~glRVLIVDDD-~~~re~L~~lL~~-~gy~V~-tasdg~eALe~-Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
..+||.||--- ..-...+..+... .+++++ .|....+..+. .++.. ..-+..| .+.+-..+++
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~-----------~~~ll~~~~v 83 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS-----------YEELLESGLV 83 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC-----------HHHHHHSSCC
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC-----------HHHHhcCCCC
Confidence 45888888876 3333344444333 356654 44433333333 33322 1112222 2222122445
Q ss_pred cEEEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006661 108 PVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (636)
Q Consensus 108 PVIILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vl 150 (636)
-+|+++... -.+.+.+|+++|..=|+-||+ +.++..++++.+-
T Consensus 84 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 130 (340)
T 1zh8_A 84 DAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSE 130 (340)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 455554433 457888999999999999996 7888887776653
No 310
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=21.57 E-value=5.1e+02 Score=25.50 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCcEEEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006661 106 DLPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (636)
Q Consensus 106 ~iPVIILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vl 150 (636)
++-+|+++... ..+.+.++++.|..=|+-||+ +.++..++++.+-
T Consensus 62 ~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~ 110 (332)
T 2glx_A 62 DVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAR 110 (332)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 44455555443 346778899999888999996 6777776666543
No 311
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=21.54 E-value=4.3e+02 Score=26.58 Aligned_cols=106 Identities=8% Similarity=0.099 Sum_probs=60.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 30 fP~glRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
+...+||.||---..-.......|... +++++ .|....+..+ +.. +..-..+ | .+.+-..+++
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~--~~~~~~~------~----~~~ll~~~~v 68 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADW--PAIPVVS------D----PQMLFNDPSI 68 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTC--SSCCEES------C----HHHHHHCSSC
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhC--CCCceEC------C----HHHHhcCCCC
Confidence 345689999988776665334444443 67765 3433222222 111 1111111 1 1222223445
Q ss_pred cEEEEecCC--CHHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHHHH
Q 006661 108 PVIMMSADG--RVSAVMRGIRHGACDYLIKP--IREEELKNIWQHVV 150 (636)
Q Consensus 108 PVIILSa~~--d~e~v~kAle~GA~DYLlKP--i~~eeLk~~Iq~vl 150 (636)
-+|+++... ..+.+.+|+++|..=|+-|| .+.++..++++.+-
T Consensus 69 D~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~ 115 (352)
T 3kux_A 69 DLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHAD 115 (352)
T ss_dssp CEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHH
Confidence 555554433 36778899999999999999 57788887776553
No 312
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=21.49 E-value=57 Score=31.22 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=35.3
Q ss_pred ceEEEEeCCCCCCC-------HHHHHHHHhccC-----CCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 80 FDVVLSDVHMPDMD-------GFKLLEHIGLEM-----DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 80 pDLVIlDI~MPdmD-------G~ELLk~Ir~~~-----~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
.|.|+++-..|+.+ +++.++++++.. ++|+++.-+-. .+.+.+++++||+.+++=
T Consensus 141 ~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvg 207 (230)
T 1rpx_A 141 VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAG 207 (230)
T ss_dssp CSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEES
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 68888887666433 345556665322 67766544443 566777888899887653
No 313
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.45 E-value=1.8e+02 Score=31.79 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 67 ~eALe~Lre~k~~pDLVIlDI~MPdmD-G~ELLk~Ir~~-~~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
.+.++.+.+. .+|+|.+|...+... -+++++++++. +++|||+ ..-.+.+.+..+.++||+...+
T Consensus 233 ~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhc--cCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 3444444443 389999998876543 45788888754 4788877 3335667888999999988775
No 314
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=21.43 E-value=6.2e+02 Score=25.25 Aligned_cols=107 Identities=12% Similarity=0.190 Sum_probs=58.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCce-EEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFD-VVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasdg~eALe~Lre~k~~pD-LVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
++||.||---..-...+..+... .+++++ .+....+..+.+.+.. .++ -+..| .+.+-...++-+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-g~~~~~~~~-----------~~~ll~~~~~D~ 69 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-QLNATVYPN-----------DDSLLADENVDA 69 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-TCCCEEESS-----------HHHHHHCTTCCE
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-CCCCeeeCC-----------HHHHhcCCCCCE
Confidence 36777877766666556555523 466655 3443333333333221 111 12222 122212233444
Q ss_pred EEEecC--CCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 110 IMMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~--~d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
|+++.. ...+.+.+|+++|..=++-||+ +.++..++++.+-+
T Consensus 70 V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 70 VLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 444433 3456788899999988999995 67788777765543
No 315
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=21.39 E-value=96 Score=29.08 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=32.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006661 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (636)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIl 85 (636)
+|+|||=-.-+...+.+.|++.|+++....+.++. +. +|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 69999966556677888899999999888886543 22 687776
No 316
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=21.39 E-value=6.5e+02 Score=25.54 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=56.1
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 006661 36 VLVVDDDITC----LRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (636)
Q Consensus 36 VLIVDDD~~~----re~L~~lL~~~gy--~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~-~~iP 108 (636)
|+|-|.+... .+.++..-+.... ....+.+.+++.+.++. ..|.|.+|- ++--++.+.++.. ..++
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~~e~l~~~v~~~~~~~~ 254 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FNTDQMREAVKRVNGQAR 254 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CCHHHHHHHHHTTCTTCC
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCe
Confidence 6777776554 4455555444443 34578888888877753 389999985 3333332323322 2344
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEE
Q 006661 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (636)
Q Consensus 109 VIILSa~~d~e~v~kAle~GA~DYL 133 (636)
|..|+--+.+.+.+..+.|++.+-
T Consensus 255 -I~ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 255 -LEVSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp -EEECCCSCHHHHHHHHHTTCSEEE
T ss_pred -EEEECCCCHHHHHHHHHcCCCEEE
Confidence 445666688999999999996543
No 317
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=21.34 E-value=3.8e+02 Score=26.00 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=40.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy-~V-~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
...+|..+|-++...+.++..+++.+. .+ ....+..+....+......+|+|++|.
T Consensus 107 ~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 107 NKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 346899999999999999999988765 34 356677665443321234599999994
No 318
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=21.17 E-value=2e+02 Score=26.05 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=37.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~k~~pDLVIlDI 87 (636)
|.+|.++.... ....+...+...+..+..+.+..++++++...+ .|.++.|.
T Consensus 111 g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR--LDAALQDE 162 (239)
T ss_dssp TCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS--CSEEEEEH
T ss_pred CCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC--CCEEEeCc
Confidence 56777776554 334455555444678889999999999998755 99999973
No 319
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=21.10 E-value=3.8e+02 Score=22.69 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=35.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHc
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER 76 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy~V~tasdg~eALe~Lre~ 76 (636)
+-|||+..|....+..+.+-++...+..++....+.-+.+.+.
T Consensus 3 lyvliisndkklieearkmaekanlelrtvktedelkkyleef 45 (110)
T 2kpo_A 3 LYVLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYLEEF 45 (110)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHH
T ss_pred EEEEEEcCcHHHHHHHHHHHHhcCceeeeeccHHHHHHHHHHH
Confidence 4589999999999999999988888999988888776666553
No 320
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=21.03 E-value=2.4e+02 Score=29.57 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=41.3
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006661 34 LRVLVVDDDIT-----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (636)
Q Consensus 34 lRVLIVDDD~~-----~re~L~~lL~~~gy~V~tas---------dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk 99 (636)
-|+|||-|+.. ..+.+...|++.++.+..+. ...++++.+++.. +|+||- ..+..-+++.+
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEK--VEAVLG---VGGGSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTT--CSEEEE---EESHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcC--CCEEEE---eCChhHHHHHH
Confidence 48999977432 35567777777777765543 3445666666654 898885 45555667777
Q ss_pred HHh
Q 006661 100 HIG 102 (636)
Q Consensus 100 ~Ir 102 (636)
.+.
T Consensus 119 ~iA 121 (407)
T 1vlj_A 119 AVA 121 (407)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 321
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=20.79 E-value=3.5e+02 Score=24.15 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=43.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHh
Q 006661 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG 102 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~gy-~V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPd--mDG~ELLk~Ir 102 (636)
-+|.-+|-++...+..+..+...+. .+ ....+..+.+..+. ...+|+|++|.-... .+--++++.+.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~~ 138 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAALG 138 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHHH
Confidence 4799999999999999988877654 33 35667666543321 235999999853322 12334555553
No 322
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=20.78 E-value=2.5e+02 Score=29.29 Aligned_cols=78 Identities=4% Similarity=-0.020 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeE-EeCCCCHHHHH
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPIREEELK 143 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DY-LlKPi~~eeLk 143 (636)
+.++|+++++... .+++..++--++. +-++.+++|++...+||+.-=...+.....++++.|++|+ .+|+...-=|.
T Consensus 230 ~~~~ai~~~~~l~-~~~i~~iE~P~~~-~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 307 (410)
T 2gl5_A 230 GTNSAIQFAKAIE-KYRIFLYEEPIHP-LNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGIT 307 (410)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECSSCS-SCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHH-hcCCCeEECCCCh-hhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 5678888877643 4677777755554 3366777776666788876444446678889999998876 56776544443
Q ss_pred H
Q 006661 144 N 144 (636)
Q Consensus 144 ~ 144 (636)
.
T Consensus 308 ~ 308 (410)
T 2gl5_A 308 E 308 (410)
T ss_dssp H
T ss_pred H
Confidence 3
No 323
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=20.74 E-value=1.7e+02 Score=28.60 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCceE---EEEeCCC-CCC-CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHHcCCCeEEeCCC
Q 006661 65 QAAVALDILRERKGCFDV---VLSDVHM-PDM-DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIKPI 137 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDL---VIlDI~M-Pdm-DG~ELLk~Ir~~~~iPVI--ILSa~~d~e~v~kAle~GA~DYLlKPi 137 (636)
+..++++.+ +.. .|. =++|-+. |.. -|.++++.||...+.|+. +|+.. ...++..+.++||+....-..
T Consensus 14 ~l~~~i~~~-~~g--ad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~d-p~~~i~~~~~aGAd~itvh~E 89 (231)
T 3ctl_A 14 KFKEQIEFI-DSH--ADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTR-PQDYIAQLARAGADFITLHPE 89 (231)
T ss_dssp GHHHHHHHH-HTT--CSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSC-GGGTHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHH-HcC--CCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecC-HHHHHHHHHHcCCCEEEECcc
Confidence 456677777 332 343 3455542 333 389999999875556543 45553 345678889999987765443
Q ss_pred C-HHHHHHHHHHH
Q 006661 138 R-EEELKNIWQHV 149 (636)
Q Consensus 138 ~-~eeLk~~Iq~v 149 (636)
. ...+.++++.+
T Consensus 90 a~~~~~~~~i~~i 102 (231)
T 3ctl_A 90 TINGQAFRLIDEI 102 (231)
T ss_dssp GCTTTHHHHHHHH
T ss_pred cCCccHHHHHHHH
Confidence 3 23355555444
No 324
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=20.65 E-value=6.5e+02 Score=25.45 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=56.8
Q ss_pred EEEEEeCCHHHHHH----HHHHHHhCCC---eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006661 35 RVLVVDDDITCLRI----LEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (636)
Q Consensus 35 RVLIVDDD~~~re~----L~~lL~~~gy---~V~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~i 107 (636)
-+||.||+..+... ++..-+..+. ....+.+.+++.+.++.. .|.|.+|-.-|.. --+..+.++ ..+
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aG---aD~I~ld~~~~~~-~k~av~~v~--~~i 241 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAG---ADLILLDNFPLEA-LREAVRRVG--GRV 241 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHT---CSEEEEESCCHHH-HHHHHHHHT--TSS
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC---CCEEEECCCCHHH-HHHHHHHhC--CCC
Confidence 37888887765432 3333233332 234788899998888653 7999999643311 112222222 256
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 108 PVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
|++. ++--+.+.+.+..+.|++.+-+
T Consensus 242 pi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 242 PLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp CEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred eEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 6655 6667788888999999876654
No 325
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=20.51 E-value=2.6e+02 Score=26.46 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=35.1
Q ss_pred CHHHHHHHHhccCCCcEEE-EecCCCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006661 93 DGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (636)
Q Consensus 93 DG~ELLk~Ir~~~~iPVII-LSa~~d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~v 149 (636)
.|+++++.|+...+.|+.+ +.-.+..+.+..+.++||+...+-.. ..+++...++.+
T Consensus 55 ~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~ 114 (230)
T 1rpx_A 55 IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQI 114 (230)
T ss_dssp CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHH
T ss_pred cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHH
Confidence 5789999997654556544 33333335778888999987755443 334444444443
No 326
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=20.47 E-value=1.9e+02 Score=28.99 Aligned_cols=72 Identities=25% Similarity=0.243 Sum_probs=0.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEEEECC-------------------------------------------
Q 006661 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVTTCSQ------------------------------------------- 65 (636)
Q Consensus 33 glRVLIVD----DD~~~re~L~~lL~~~gy~V~tasd------------------------------------------- 65 (636)
.||||++- .+..-...|...|.+.|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006661 66 ----------------------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (636)
Q Consensus 66 ----------------------g~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIIL 112 (636)
..+..+.+++.+ ||+|++|. +...|.-+.+.++ +|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--PD~Vv~~~--~~~~~~~aa~~~g----iP~v~~ 141 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWR--PSVLLVDV--CALIGRVLGGLLD----LPVVLH 141 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCHHHHHHHHHTT----CCEEEE
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC--CCEEEeCc--chhHHHHHHHHhC----CCEEEE
No 327
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=20.44 E-value=4.9e+02 Score=26.13 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=58.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006661 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (636)
Q Consensus 32 ~glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe-~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPV 109 (636)
..+||.||---..-...+..+....+++++ .+....+..+ ..+... ... -.|--++++ ..++-+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g--~~~--------~~~~~~~l~----~~~~D~ 69 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN--CAG--------DATMEALLA----REDVEM 69 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHT--CCC--------CSSHHHHHH----CSSCCE
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC--CCC--------cCCHHHHhc----CCCCCE
Confidence 357888888776555545444433367765 4443333333 333221 110 012122222 234445
Q ss_pred EEEecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006661 110 IMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (636)
Q Consensus 110 IILSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vlr 151 (636)
|+++... ..+.+.+|+++|..=|+-||+ +.++..++++.+-+
T Consensus 70 V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 70 VIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp EEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 4444333 467788999999999999995 67788777766543
No 328
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=20.31 E-value=5e+02 Score=27.55 Aligned_cols=86 Identities=15% Similarity=0.018 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCC---eEEEECC----HHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-----cCCCcEEEE
Q 006661 46 LRILEQMLRRCLY---NVTTCSQ----AAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-----EMDLPVIMM 112 (636)
Q Consensus 46 re~L~~lL~~~gy---~V~tasd----g~eALe~Lre~k~~pDLVIlDI~MPd-mDG~ELLk~Ir~-----~~~iPVIIL 112 (636)
.+.++.+.+.... .+..+.+ ..+|++.+++. ..+|.|-+|-.-+. .|-.++.++++. ...-..|+.
T Consensus 197 ~~A~~~~~~~~p~~~~~~vlvDT~d~~~~~al~~a~~l-~~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~~~I~a 275 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMF-DKVDYIRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMV 275 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEEECCSSSCHHHHHHHHHTTC-SCCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCchHHHHHHHHHHHhh-cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEE
Confidence 6677777776643 2334444 57777766542 25899999964331 566777777652 111257888
Q ss_pred ecCCCHHHHHHHHHcCCCeE
Q 006661 113 SADGRVSAVMRGIRHGACDY 132 (636)
Q Consensus 113 Sa~~d~e~v~kAle~GA~DY 132 (636)
|..-+.+.+.+..+.|++.|
T Consensus 276 Sggl~~~~i~~l~~~GvD~~ 295 (398)
T 2i1o_A 276 SGGLDENTVKKLREAGAEAF 295 (398)
T ss_dssp ESSCCHHHHHHHHHTTCCEE
T ss_pred eCCCCHHHHHHHHHcCCCEE
Confidence 99999999999999998444
No 329
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=20.30 E-value=2.8e+02 Score=21.74 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=32.8
Q ss_pred CcceecHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHH
Q 006661 221 PRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVA 265 (636)
Q Consensus 221 pRVvWt~ELH~kFv~AVnqLGidKAvPKkILelMnVpgLTrenVA 265 (636)
.|..||.|--+..+++|.+.|..+= +.|.+.+...+-|..++.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W--~~Ia~~~~~~~Rt~~qcr 52 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNW--AAISKNYPFVNRTAVMIK 52 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCH--HHHHHHSCCSSCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCch--HHHHhhcCCCCCCHHHHH
Confidence 3557999999999999999996543 478887666677766643
No 330
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.24 E-value=2.5e+02 Score=30.40 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCH-HHHHHHHhccC-CCcEEEEecCCCHHHHHHHHHcCCCeEEe
Q 006661 66 AAVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (636)
Q Consensus 66 g~eALe~Lre~k~~pDLVIlDI~MPdmDG-~ELLk~Ir~~~-~iPVIILSa~~d~e~v~kAle~GA~DYLl 134 (636)
..+.++.+.+. .+|+|.+|......+. .++++.+++.. ++|||+-.. ...+.+.++.++||+...+
T Consensus 256 ~~~~a~~~~~a--G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHT--TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHc--CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 34444555543 4899999887654433 57888887654 788886333 5577788999999987655
No 331
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=20.12 E-value=1.5e+02 Score=31.43 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=62.0
Q ss_pred EEEEEe--CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHH-------------------HcCCCceEEEEeCCCC
Q 006661 35 RVLVVD--DDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILR-------------------ERKGCFDVVLSDVHMP 90 (636)
Q Consensus 35 RVLIVD--DD~~---~re~L~~lL~~~gy~V~tasdg~eALe~Lr-------------------e~k~~pDLVIlDI~MP 90 (636)
+|+||- +++. ....|.++|.+.++.|..-....+.+.... +....+|+||+=
T Consensus 40 ~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~l---- 115 (365)
T 3pfn_A 40 SVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICL---- 115 (365)
T ss_dssp EEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEE----
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEEE----
Confidence 578883 3333 345556666666888876544444332211 011246887772
Q ss_pred CCCHH--HHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006661 91 DMDGF--KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (636)
Q Consensus 91 dmDG~--ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlKPi~~eeLk~~Iq~vlrkk~~ 155 (636)
+.||. .+++.+ ....+||+=+. .|-.+||. +++.+++...+.+++++.+.
T Consensus 116 GGDGT~L~aa~~~-~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~~~ 167 (365)
T 3pfn_A 116 GGDGTLLYASSLF-QGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGNAA 167 (365)
T ss_dssp SSTTHHHHHHHHC-SSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSCCB
T ss_pred cChHHHHHHHHHh-ccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCCCe
Confidence 66773 333333 23567887654 36778888 78889999999999876543
No 332
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=20.07 E-value=3.5e+02 Score=27.29 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHHcCCCeEEeC
Q 006661 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (636)
Q Consensus 65 dg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVIILSa~~d~e~v~kAle~GA~DYLlK 135 (636)
+..+.++.+.+.. +|+|.+....| .++++.++.. .++++... .+.+.+.++.+.|++.+++-
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 4457777777654 89999887665 5778888654 67777533 35667788999999988873
No 333
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=20.07 E-value=6.4e+02 Score=24.92 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=60.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006661 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (636)
Q Consensus 33 glRVLIVDDD~~~re~L~~lL~~~gy~V~-tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~ELLk~Ir~~~~iPVII 111 (636)
++||.||---..-...+..+....+++++ .+....+..+.+.+.. ... .. |--++++ .+++-+|+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~-~~~--~~-------~~~~~l~----~~~~D~V~ 68 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY-GCE--VR-------TIDAIEA----AADIDAVV 68 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT-TCE--EC-------CHHHHHH----CTTCCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh-CCC--cC-------CHHHHhc----CCCCCEEE
Confidence 47888888766666555555544467765 3443333334333321 122 21 2122222 23444555
Q ss_pred EecCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006661 112 MSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (636)
Q Consensus 112 LSa~~--d~e~v~kAle~GA~DYLlKPi--~~eeLk~~Iq~vl 150 (636)
++... ..+.+.+|+++|..=|+-||+ +.++..++++.+-
T Consensus 69 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 111 (331)
T 4hkt_A 69 ICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVS 111 (331)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 44433 457788899999999999994 6788877776553
No 334
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=20.05 E-value=68 Score=34.53 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=32.7
Q ss_pred CCccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECC---H----HHHHHHHHHcCCCceEEEEeC
Q 006661 31 PAGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQ---A----AVALDILRERKGCFDVVLSDV 87 (636)
Q Consensus 31 P~glRVLIVDDD~---~~re~L~~lL~~~gy~V~tasd---g----~eALe~Lre~k~~pDLVIlDI 87 (636)
+.+.+|+++|-|. ...+.+..+-...+..+..... . .++++.++.. .+|+||+|.
T Consensus 124 ~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~--~~DvVIIDT 188 (425)
T 2ffh_A 124 GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE--ARDLILVDT 188 (425)
T ss_dssp TTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred HcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 3578999999883 3333444444444666665432 2 2344444323 489999996
No 335
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=20.04 E-value=3.6e+02 Score=28.11 Aligned_cols=76 Identities=9% Similarity=0.015 Sum_probs=48.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCe-E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH
Q 006661 34 LRVLVVDDDITCLRILEQMLRRC---------------LYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK 96 (636)
Q Consensus 34 lRVLIVDDD~~~re~L~~lL~~~---------------gy~-V-~tasdg~eALe~Lre~k~~pDLVIlDI~MPdmDG~E 96 (636)
.+|..+|-++...+.+++-++.. +.. + ....|+.+.+... ...||+|++|- | ....+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~-~~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--F-GSPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--S-SCCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--C-CCHHH
Confidence 57999999999999999988776 543 4 3566777665433 23499999985 3 23345
Q ss_pred HHHHH-hccCCCcEEEEecC
Q 006661 97 LLEHI-GLEMDLPVIMMSAD 115 (636)
Q Consensus 97 LLk~I-r~~~~iPVIILSa~ 115 (636)
+++.. +....--++.+|..
T Consensus 146 ~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 55543 22112226666654
Done!