Query 006662
Match_columns 636
No_of_seqs 692 out of 3256
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 12:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 9E-151 2E-155 1214.1 32.9 500 106-618 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 2.7E-32 5.9E-37 295.6 7.4 197 401-622 33-264 (506)
3 PLN02336 phosphoethanolamine N 99.8 5.3E-20 1.1E-24 205.3 19.6 328 206-579 27-369 (475)
4 COG2226 UbiE Methylase involve 99.6 6.7E-15 1.5E-19 149.7 12.8 110 206-321 41-157 (238)
5 PF08241 Methyltransf_11: Meth 99.6 1.1E-14 2.3E-19 124.8 10.0 92 223-318 1-95 (95)
6 PF01209 Ubie_methyltran: ubiE 99.5 3.5E-14 7.6E-19 144.7 11.3 109 207-321 38-154 (233)
7 COG2227 UbiG 2-polyprenyl-3-me 99.5 6.2E-14 1.3E-18 141.0 10.6 150 165-325 11-166 (243)
8 PRK10258 biotin biosynthesis p 99.5 2.1E-13 4.6E-18 139.7 14.0 114 202-321 28-141 (251)
9 PLN02396 hexaprenyldihydroxybe 99.5 3.3E-13 7.1E-18 143.7 15.5 139 219-361 132-288 (322)
10 PTZ00098 phosphoethanolamine N 99.5 8.4E-14 1.8E-18 144.3 10.7 115 202-321 38-157 (263)
11 PLN02233 ubiquinone biosynthes 99.5 4.5E-13 9.7E-18 138.8 14.2 108 208-321 65-183 (261)
12 PLN02244 tocopherol O-methyltr 99.4 1.1E-12 2.4E-17 140.8 15.1 115 203-321 100-224 (340)
13 PF13489 Methyltransf_23: Meth 99.4 4.6E-13 1E-17 126.1 10.3 145 204-359 9-160 (161)
14 PRK14103 trans-aconitate 2-met 99.4 1.3E-12 2.8E-17 134.4 12.3 107 206-321 19-127 (255)
15 PRK01544 bifunctional N5-gluta 99.4 5.1E-11 1.1E-15 134.3 24.5 287 220-593 140-477 (506)
16 PRK11207 tellurite resistance 99.4 3.7E-12 8E-17 126.5 13.0 106 208-319 22-133 (197)
17 PRK11088 rrmA 23S rRNA methylt 99.4 4.8E-12 1E-16 131.7 14.3 159 130-322 20-183 (272)
18 PF02353 CMAS: Mycolic acid cy 99.4 1.6E-12 3.4E-17 135.6 10.4 116 197-320 43-166 (273)
19 TIGR00477 tehB tellurite resis 99.4 7.2E-12 1.6E-16 124.2 13.2 106 208-319 22-132 (195)
20 PRK01683 trans-aconitate 2-met 99.3 5.4E-12 1.2E-16 129.7 12.4 110 205-321 20-131 (258)
21 PRK11036 putative S-adenosyl-L 99.3 6.1E-12 1.3E-16 129.5 11.9 99 219-321 45-150 (255)
22 PLN02336 phosphoethanolamine N 99.3 1.5E-11 3.3E-16 137.4 15.8 111 205-321 255-370 (475)
23 PF12847 Methyltransf_18: Meth 99.3 7E-12 1.5E-16 111.7 10.4 97 220-320 3-111 (112)
24 PRK05785 hypothetical protein; 99.3 1.3E-11 2.8E-16 125.4 12.8 87 220-313 53-140 (226)
25 COG2230 Cfa Cyclopropane fatty 99.3 1E-11 2.2E-16 128.9 11.8 124 190-321 46-177 (283)
26 COG4106 Tam Trans-aconitate me 99.3 1.2E-11 2.6E-16 122.2 11.7 198 219-469 31-231 (257)
27 PRK08317 hypothetical protein; 99.3 6.2E-11 1.3E-15 118.7 16.8 114 202-321 5-125 (241)
28 TIGR02752 MenG_heptapren 2-hep 99.3 2.3E-11 4.9E-16 122.8 13.6 112 204-321 33-152 (231)
29 PLN02490 MPBQ/MSBQ methyltrans 99.3 4.1E-11 9E-16 128.3 16.2 148 202-359 98-253 (340)
30 TIGR02072 BioC biotin biosynth 99.3 3.7E-11 8E-16 120.6 13.3 99 219-321 35-136 (240)
31 TIGR00452 methyltransferase, p 99.3 9.5E-11 2.1E-15 124.5 16.4 109 206-321 111-226 (314)
32 PRK15068 tRNA mo(5)U34 methylt 99.3 5.7E-11 1.2E-15 126.8 14.6 109 205-320 111-226 (322)
33 PF13649 Methyltransf_25: Meth 99.3 6.5E-12 1.4E-16 110.9 6.1 90 222-314 1-101 (101)
34 PRK12335 tellurite resistance 99.3 4.9E-11 1.1E-15 125.2 13.3 96 221-320 123-223 (287)
35 PF07021 MetW: Methionine bios 99.3 4.6E-11 1E-15 117.2 12.0 143 206-359 5-164 (193)
36 PF13847 Methyltransf_31: Meth 99.2 4.9E-11 1.1E-15 113.0 10.7 97 220-321 5-111 (152)
37 PRK15451 tRNA cmo(5)U34 methyl 99.2 9.1E-11 2E-15 120.5 11.9 97 220-321 58-165 (247)
38 KOG1540 Ubiquinone biosynthesi 99.2 1.1E-10 2.5E-15 117.9 12.2 103 215-321 97-215 (296)
39 TIGR00740 methyltransferase, p 99.2 1.2E-10 2.7E-15 118.6 12.4 97 220-321 55-162 (239)
40 TIGR03587 Pse_Me-ase pseudamin 99.2 1.8E-10 3.8E-15 115.3 13.0 95 220-320 45-142 (204)
41 PF05219 DREV: DREV methyltran 99.2 1E-10 2.2E-15 119.3 10.9 186 190-399 64-255 (265)
42 PF03848 TehB: Tellurite resis 99.2 2.1E-10 4.6E-15 113.4 12.7 107 208-320 22-133 (192)
43 smart00828 PKS_MT Methyltransf 99.2 2.3E-10 4.9E-15 115.1 12.6 96 221-321 2-105 (224)
44 PRK11873 arsM arsenite S-adeno 99.2 2.6E-10 5.6E-15 118.4 13.3 102 214-321 75-184 (272)
45 KOG1270 Methyltransferases [Co 99.2 9.3E-11 2E-15 119.2 9.5 135 177-321 46-196 (282)
46 TIGR03840 TMPT_Se_Te thiopurin 99.2 2.7E-10 5.9E-15 114.8 12.7 98 220-320 36-152 (213)
47 PRK11705 cyclopropane fatty ac 99.1 3.4E-10 7.4E-15 123.6 13.2 112 202-321 153-268 (383)
48 PRK00216 ubiE ubiquinone/menaq 99.1 1.9E-09 4.1E-14 108.4 17.2 111 205-321 40-159 (239)
49 PRK00107 gidB 16S rRNA methylt 99.1 1.3E-09 2.8E-14 107.7 15.1 114 219-359 46-166 (187)
50 TIGR02021 BchM-ChlM magnesium 99.1 5.8E-10 1.3E-14 112.1 11.6 154 200-360 37-204 (219)
51 TIGR00406 prmA ribosomal prote 99.1 1.4E-09 3.1E-14 114.3 14.4 120 193-321 134-260 (288)
52 PRK05134 bifunctional 3-demeth 99.1 1.1E-09 2.5E-14 110.7 13.0 138 172-322 11-153 (233)
53 PF05175 MTS: Methyltransferas 99.1 3.5E-09 7.5E-14 102.8 15.7 117 199-321 14-141 (170)
54 PRK06922 hypothetical protein; 99.1 6.3E-10 1.4E-14 126.6 12.1 99 220-321 420-538 (677)
55 KOG4300 Predicted methyltransf 99.1 5.7E-10 1.2E-14 109.7 10.0 97 221-321 79-183 (252)
56 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1.8E-09 4E-14 107.4 14.0 112 204-321 27-144 (223)
57 PF05401 NodS: Nodulation prot 99.1 9.6E-10 2.1E-14 108.3 11.4 104 214-321 39-147 (201)
58 PLN02585 magnesium protoporphy 99.1 2.1E-09 4.6E-14 114.3 15.0 150 202-359 127-296 (315)
59 smart00138 MeTrc Methyltransfe 99.1 7.7E-10 1.7E-14 115.0 11.1 104 218-321 99-243 (264)
60 PF08242 Methyltransf_12: Meth 99.1 8.7E-11 1.9E-15 102.9 3.2 90 223-316 1-99 (99)
61 PF08003 Methyltransf_9: Prote 99.0 1.3E-09 2.7E-14 113.8 11.7 111 206-320 105-219 (315)
62 PRK13255 thiopurine S-methyltr 99.0 3.5E-09 7.6E-14 107.1 14.5 96 220-318 39-153 (218)
63 PRK00517 prmA ribosomal protei 99.0 1.5E-09 3.3E-14 111.7 12.0 115 219-359 120-235 (250)
64 PRK00121 trmB tRNA (guanine-N( 99.0 1.9E-09 4.1E-14 107.6 12.0 99 219-321 41-157 (202)
65 TIGR02469 CbiT precorrin-6Y C5 99.0 6.4E-09 1.4E-13 93.7 13.5 108 204-320 7-122 (124)
66 PF08241 Methyltransf_11: Meth 99.0 2.2E-10 4.7E-15 97.9 3.7 92 481-577 1-95 (95)
67 PRK06202 hypothetical protein; 99.0 4.1E-09 8.9E-14 106.9 13.6 96 219-319 61-165 (232)
68 KOG1541 Predicted protein carb 99.0 3.1E-09 6.6E-14 105.6 11.8 116 202-321 34-161 (270)
69 PF06325 PrmA: Ribosomal prote 99.0 2.4E-09 5.3E-14 112.7 11.3 121 192-321 135-260 (295)
70 PRK09489 rsmC 16S ribosomal RN 99.0 7.7E-09 1.7E-13 111.3 15.2 120 195-321 175-304 (342)
71 PRK11188 rrmJ 23S rRNA methylt 99.0 2.7E-09 5.8E-14 107.2 10.4 103 207-321 41-166 (209)
72 PRK13944 protein-L-isoaspartat 99.0 6E-09 1.3E-13 104.2 12.9 105 204-320 60-173 (205)
73 COG2264 PrmA Ribosomal protein 99.0 4.2E-09 9.1E-14 110.4 11.7 120 194-321 138-264 (300)
74 TIGR00537 hemK_rel_arch HemK-r 98.9 7.1E-09 1.5E-13 101.0 12.4 96 221-321 22-141 (179)
75 TIGR02081 metW methionine bios 98.9 1.3E-08 2.8E-13 100.5 13.8 130 221-359 16-164 (194)
76 TIGR01983 UbiG ubiquinone bios 98.9 2.1E-08 4.5E-13 100.6 15.3 99 219-321 46-150 (224)
77 PRK08287 cobalt-precorrin-6Y C 98.9 3E-08 6.5E-13 97.3 15.9 112 198-320 13-131 (187)
78 TIGR00138 gidB 16S rRNA methyl 98.9 2.1E-08 4.5E-13 98.6 14.7 92 220-320 44-142 (181)
79 TIGR02716 C20_methyl_CrtF C-20 98.9 1.6E-08 3.4E-13 107.0 14.4 109 205-321 138-255 (306)
80 TIGR00091 tRNA (guanine-N(7)-) 98.9 1.2E-08 2.6E-13 101.0 12.3 98 220-321 18-133 (194)
81 PRK15001 SAM-dependent 23S rib 98.9 1.2E-08 2.7E-13 110.9 13.2 117 198-320 210-340 (378)
82 COG2813 RsmC 16S RNA G1207 met 98.9 5.8E-09 1.3E-13 108.9 10.0 133 185-321 126-267 (300)
83 PRK13256 thiopurine S-methyltr 98.9 2E-08 4.4E-13 101.9 13.6 99 220-321 45-164 (226)
84 PRK14967 putative methyltransf 98.9 2.5E-08 5.4E-13 100.8 14.2 98 220-321 38-160 (223)
85 COG4976 Predicted methyltransf 98.9 1.8E-09 3.9E-14 107.7 5.4 136 216-359 123-262 (287)
86 PRK13942 protein-L-isoaspartat 98.9 1.9E-08 4.1E-13 101.2 12.6 107 202-320 62-176 (212)
87 PRK07580 Mg-protoporphyrin IX 98.9 1.6E-08 3.5E-13 101.7 12.0 109 202-316 46-162 (230)
88 TIGR00080 pimt protein-L-isoas 98.9 2.2E-08 4.7E-13 100.7 12.5 105 204-320 65-177 (215)
89 KOG3010 Methyltransferase [Gen 98.8 7.4E-09 1.6E-13 104.3 7.9 99 215-319 31-136 (261)
90 PF13659 Methyltransf_26: Meth 98.8 1.3E-08 2.9E-13 91.4 8.8 99 220-321 2-116 (117)
91 PRK14968 putative methyltransf 98.8 1.1E-07 2.3E-12 92.4 15.3 108 208-321 15-149 (188)
92 TIGR03534 RF_mod_PrmC protein- 98.8 1.2E-07 2.5E-12 96.6 16.1 113 201-320 73-217 (251)
93 PRK14121 tRNA (guanine-N(7)-)- 98.8 2.5E-08 5.5E-13 108.3 11.7 97 220-320 124-235 (390)
94 TIGR01177 conserved hypothetic 98.8 5.7E-08 1.2E-12 104.1 14.1 111 206-321 172-295 (329)
95 PRK00107 gidB 16S rRNA methylt 98.8 5.1E-08 1.1E-12 96.4 12.6 152 455-619 27-187 (187)
96 PRK04266 fibrillarin; Provisio 98.8 1.2E-07 2.5E-12 96.6 15.1 102 211-321 67-177 (226)
97 PLN03075 nicotianamine synthas 98.8 4.6E-08 9.9E-13 102.8 12.3 99 218-320 123-233 (296)
98 PF06080 DUF938: Protein of un 98.8 1.1E-07 2.5E-12 94.6 14.3 162 202-369 12-204 (204)
99 TIGR03438 probable methyltrans 98.7 7E-08 1.5E-12 102.2 12.3 98 220-320 65-177 (301)
100 PRK00377 cbiT cobalt-precorrin 98.7 2.2E-07 4.7E-12 92.3 15.1 103 210-321 34-146 (198)
101 cd02440 AdoMet_MTases S-adenos 98.7 7.4E-08 1.6E-12 81.6 10.0 96 221-319 1-103 (107)
102 PRK00312 pcm protein-L-isoaspa 98.7 1E-07 2.2E-12 95.4 12.6 106 204-321 66-176 (212)
103 COG4123 Predicted O-methyltran 98.7 1.6E-07 3.4E-12 96.3 13.9 120 195-321 25-171 (248)
104 PTZ00098 phosphoethanolamine N 98.7 1.1E-08 2.4E-13 106.3 5.0 127 448-580 8-157 (263)
105 KOG1271 Methyltransferases [Ge 98.7 1.7E-07 3.7E-12 90.9 12.1 100 221-321 70-182 (227)
106 PRK14966 unknown domain/N5-glu 98.7 3.5E-07 7.6E-12 100.2 15.9 134 201-359 238-402 (423)
107 PRK09328 N5-glutamine S-adenos 98.7 4.6E-07 1E-11 93.8 15.7 114 201-320 93-238 (275)
108 PRK11783 rlmL 23S rRNA m(2)G24 98.7 6.9E-07 1.5E-11 104.9 18.2 124 477-602 539-679 (702)
109 PF05148 Methyltransf_8: Hypot 98.7 2.9E-07 6.2E-12 91.7 12.7 134 206-371 61-199 (219)
110 PF03291 Pox_MCEL: mRNA cappin 98.7 8.8E-08 1.9E-12 102.7 9.8 101 218-321 62-187 (331)
111 PTZ00146 fibrillarin; Provisio 98.6 3.5E-07 7.7E-12 95.9 13.6 99 213-320 129-237 (293)
112 TIGR03533 L3_gln_methyl protei 98.6 9.1E-07 2E-11 93.1 16.8 98 220-321 123-252 (284)
113 PF13489 Methyltransf_23: Meth 98.6 1E-08 2.2E-13 96.5 1.3 96 475-581 21-117 (161)
114 PRK07402 precorrin-6B methylas 98.6 4.1E-07 8.8E-12 90.1 12.8 111 201-321 25-143 (196)
115 PRK15001 SAM-dependent 23S rib 98.6 5.5E-06 1.2E-10 90.3 22.3 129 478-618 230-373 (378)
116 KOG2940 Predicted methyltransf 98.6 3.6E-08 7.9E-13 98.4 4.9 100 219-321 73-175 (325)
117 PLN02233 ubiquinone biosynthes 98.6 7.5E-08 1.6E-12 99.9 7.5 98 477-579 74-182 (261)
118 COG2518 Pcm Protein-L-isoaspar 98.6 3.9E-07 8.4E-12 91.0 12.1 105 204-320 60-169 (209)
119 PLN02232 ubiquinone biosynthes 98.6 1.3E-07 2.8E-12 91.0 8.2 72 249-321 3-82 (160)
120 KOG2361 Predicted methyltransf 98.6 2E-07 4.3E-12 94.1 9.7 119 202-323 55-186 (264)
121 TIGR00536 hemK_fam HemK family 98.6 1.1E-06 2.3E-11 92.4 15.7 116 201-321 98-245 (284)
122 TIGR00438 rrmJ cell division p 98.6 2.5E-07 5.4E-12 91.0 10.0 96 215-321 31-147 (188)
123 COG2226 UbiE Methylase involve 98.6 8.7E-08 1.9E-12 97.9 6.9 99 476-579 51-156 (238)
124 PF02353 CMAS: Mycolic acid cy 98.6 8E-08 1.7E-12 100.5 6.6 113 461-578 48-165 (273)
125 KOG3987 Uncharacterized conser 98.6 2.5E-08 5.4E-13 98.2 2.6 176 190-399 84-275 (288)
126 PF01135 PCMT: Protein-L-isoas 98.6 3.1E-07 6.7E-12 92.4 10.3 108 202-321 58-173 (209)
127 PF05724 TPMT: Thiopurine S-me 98.6 5.3E-07 1.1E-11 91.3 11.9 97 220-319 39-154 (218)
128 PRK14103 trans-aconitate 2-met 98.6 1.1E-07 2.3E-12 98.1 6.9 106 466-579 20-126 (255)
129 smart00650 rADc Ribosomal RNA 98.5 3.5E-07 7.5E-12 88.5 9.9 105 206-319 3-112 (169)
130 TIGR03704 PrmC_rel_meth putati 98.5 2.1E-06 4.6E-11 88.7 16.3 118 200-321 69-217 (251)
131 PF05891 Methyltransf_PK: AdoM 98.5 2.2E-07 4.7E-12 93.1 8.0 140 218-361 55-200 (218)
132 PRK11805 N5-glutamine S-adenos 98.5 1.6E-06 3.4E-11 92.3 14.2 98 220-321 135-264 (307)
133 KOG3045 Predicted RNA methylas 98.5 8E-07 1.7E-11 90.4 10.9 129 208-371 171-305 (325)
134 PF00891 Methyltransf_2: O-met 98.5 9.1E-07 2E-11 90.3 11.3 95 219-321 101-200 (241)
135 PRK10258 biotin biosynthesis p 98.5 3.3E-07 7.1E-12 94.0 7.8 97 475-579 41-140 (251)
136 PF12847 Methyltransf_18: Meth 98.5 1E-07 2.3E-12 84.7 3.6 98 477-579 2-111 (112)
137 PRK10901 16S rRNA methyltransf 98.5 1.1E-06 2.4E-11 97.5 12.5 110 207-321 235-373 (427)
138 PLN02244 tocopherol O-methyltr 98.5 3.1E-07 6.7E-12 99.0 7.7 97 476-579 118-223 (340)
139 PF01209 Ubie_methyltran: ubiE 98.5 1.7E-07 3.6E-12 95.9 5.1 114 455-579 33-153 (233)
140 PHA03411 putative methyltransf 98.4 1.4E-06 3.1E-11 90.6 11.8 96 220-319 66-182 (279)
141 PRK13943 protein-L-isoaspartat 98.4 1E-06 2.2E-11 94.2 11.0 105 204-320 68-180 (322)
142 PRK00377 cbiT cobalt-precorrin 98.4 1.2E-06 2.6E-11 87.0 10.2 150 442-600 7-167 (198)
143 PRK00811 spermidine synthase; 98.4 3.3E-06 7.2E-11 88.8 13.8 99 218-320 76-191 (283)
144 PRK04457 spermidine synthase; 98.4 5E-06 1.1E-10 86.5 14.6 112 203-319 52-176 (262)
145 PRK11088 rrmA 23S rRNA methylt 98.4 4.3E-07 9.4E-12 94.6 6.7 103 476-590 85-193 (272)
146 TIGR00563 rsmB ribosomal RNA s 98.4 2.5E-06 5.3E-11 94.7 12.8 112 205-321 227-369 (426)
147 PRK15068 tRNA mo(5)U34 methylt 98.4 5.5E-07 1.2E-11 96.3 7.1 97 476-578 122-225 (322)
148 PRK08287 cobalt-precorrin-6Y C 98.4 2.2E-06 4.7E-11 84.2 10.6 115 476-598 31-151 (187)
149 TIGR02752 MenG_heptapren 2-hep 98.4 1.4E-06 3.1E-11 87.9 9.6 98 477-580 46-152 (231)
150 TIGR00477 tehB tellurite resis 98.4 4.7E-07 1E-11 89.8 5.8 96 477-577 31-131 (195)
151 PRK11207 tellurite resistance 98.4 6E-07 1.3E-11 89.2 6.2 95 477-577 31-132 (197)
152 PRK11705 cyclopropane fatty ac 98.3 6.3E-07 1.4E-11 98.1 6.8 99 476-579 167-267 (383)
153 KOG1975 mRNA cap methyltransfe 98.3 7.4E-07 1.6E-11 93.2 6.9 99 220-321 119-238 (389)
154 COG2242 CobL Precorrin-6B meth 98.3 1.2E-05 2.6E-10 79.0 14.7 104 207-320 25-135 (187)
155 TIGR00452 methyltransferase, p 98.3 1.1E-06 2.4E-11 93.6 8.3 117 455-578 102-224 (314)
156 PRK09489 rsmC 16S ribosomal RN 98.3 5.5E-05 1.2E-09 81.7 21.3 130 479-619 199-337 (342)
157 PRK12335 tellurite resistance 98.3 8.5E-07 1.8E-11 93.2 7.0 116 478-601 122-257 (287)
158 PRK14901 16S rRNA methyltransf 98.3 4.2E-06 9E-11 93.1 12.7 110 206-321 242-385 (434)
159 smart00828 PKS_MT Methyltransf 98.3 5E-07 1.1E-11 90.8 4.9 96 478-580 1-105 (224)
160 TIGR00138 gidB 16S rRNA methyl 98.3 1.4E-06 3E-11 85.7 7.9 132 455-600 25-164 (181)
161 COG2519 GCD14 tRNA(1-methylade 98.3 1E-05 2.2E-10 82.8 13.8 103 207-321 85-196 (256)
162 PRK11036 putative S-adenosyl-L 98.3 4.5E-07 9.7E-12 93.5 4.2 97 477-579 45-149 (255)
163 PHA03412 putative methyltransf 98.3 4.5E-06 9.8E-11 85.1 10.9 92 220-315 51-158 (241)
164 PRK14904 16S rRNA methyltransf 98.3 3.1E-06 6.6E-11 94.5 10.7 106 210-321 244-378 (445)
165 COG4976 Predicted methyltransf 98.3 7.3E-07 1.6E-11 89.4 4.9 144 469-619 119-286 (287)
166 PLN02396 hexaprenyldihydroxybe 98.3 1.1E-06 2.4E-11 93.9 6.3 97 477-579 132-235 (322)
167 PRK14903 16S rRNA methyltransf 98.3 6.7E-06 1.4E-10 91.4 12.5 111 207-322 228-368 (431)
168 PRK01683 trans-aconitate 2-met 98.3 1.7E-06 3.7E-11 89.0 7.3 125 468-600 24-155 (258)
169 TIGR00406 prmA ribosomal prote 98.2 2.6E-06 5.6E-11 89.7 8.2 115 478-601 161-281 (288)
170 TIGR00446 nop2p NOL1/NOP2/sun 98.2 3.6E-06 7.7E-11 87.6 9.1 106 211-321 66-200 (264)
171 PRK13168 rumA 23S rRNA m(5)U19 98.2 7.7E-06 1.7E-10 91.2 12.4 111 201-321 282-401 (443)
172 PRK01581 speE spermidine synth 98.2 7.5E-06 1.6E-10 88.4 11.7 100 217-320 149-268 (374)
173 PRK08317 hypothetical protein; 98.2 2.3E-06 5E-11 85.6 7.4 102 475-579 18-124 (241)
174 TIGR00537 hemK_rel_arch HemK-r 98.2 5E-06 1.1E-10 81.0 9.3 121 478-604 21-166 (179)
175 PF02390 Methyltransf_4: Putat 98.2 7.6E-06 1.7E-10 81.5 10.5 96 221-320 20-133 (195)
176 COG2890 HemK Methylase of poly 98.2 3.4E-05 7.4E-10 81.1 15.7 96 221-321 113-239 (280)
177 PRK05785 hypothetical protein; 98.2 3E-06 6.5E-11 86.2 7.4 106 455-573 35-141 (226)
178 PRK14902 16S rRNA methyltransf 98.2 4.9E-06 1.1E-10 92.8 9.6 110 206-321 240-380 (444)
179 TIGR00417 speE spermidine synt 98.2 1.8E-05 3.9E-10 82.6 13.1 99 218-320 72-186 (270)
180 PF01739 CheR: CheR methyltran 98.2 9.3E-06 2E-10 81.0 10.4 120 202-321 13-176 (196)
181 TIGR00740 methyltransferase, p 98.2 1.4E-06 3E-11 88.9 4.6 103 477-580 54-162 (239)
182 PRK14968 putative methyltransf 98.1 7E-06 1.5E-10 79.6 8.4 136 477-618 24-188 (188)
183 PRK00517 prmA ribosomal protei 98.1 9.8E-06 2.1E-10 83.5 9.9 128 477-619 120-250 (250)
184 PRK03522 rumB 23S rRNA methylu 98.1 1.9E-05 4.1E-10 84.2 12.2 112 202-322 159-276 (315)
185 COG0220 Predicted S-adenosylme 98.1 1.5E-05 3.2E-10 81.3 10.8 98 221-320 51-164 (227)
186 PRK15451 tRNA cmo(5)U34 methyl 98.1 2.2E-06 4.9E-11 88.1 4.9 101 477-580 57-165 (247)
187 PRK03612 spermidine synthase; 98.1 2.5E-05 5.4E-10 88.9 13.7 99 218-320 297-415 (521)
188 PRK10909 rsmD 16S rRNA m(2)G96 98.1 4.8E-05 1E-09 76.1 14.1 116 198-321 34-160 (199)
189 PF05401 NodS: Nodulation prot 98.1 1.4E-05 3.1E-10 79.1 10.1 142 470-617 38-193 (201)
190 PRK00121 trmB tRNA (guanine-N( 98.1 4.4E-06 9.6E-11 83.4 6.5 123 476-600 40-178 (202)
191 PF07942 N2227: N2227-like pro 98.1 5.2E-05 1.1E-09 79.0 13.6 155 202-362 38-242 (270)
192 PLN02366 spermidine synthase 98.1 1.6E-05 3.4E-10 84.7 10.0 99 219-320 92-206 (308)
193 PF08704 GCD14: tRNA methyltra 98.1 5.7E-05 1.2E-09 77.9 13.8 105 206-321 30-147 (247)
194 TIGR00478 tly hemolysin TlyA f 98.1 6.9E-05 1.5E-09 76.5 14.2 126 219-358 76-213 (228)
195 TIGR02072 BioC biotin biosynth 98.1 8.5E-06 1.8E-10 81.7 7.4 98 477-579 35-135 (240)
196 COG2521 Predicted archaeal met 98.1 2.1E-05 4.5E-10 79.3 9.9 144 202-360 118-275 (287)
197 PRK10611 chemotaxis methyltran 98.1 2.5E-05 5.4E-10 82.3 11.1 102 219-320 116-262 (287)
198 KOG2899 Predicted methyltransf 98.0 1.8E-05 3.9E-10 80.1 9.2 99 218-319 58-208 (288)
199 smart00138 MeTrc Methyltransfe 98.0 1.1E-05 2.3E-10 84.2 6.8 129 448-581 71-244 (264)
200 PLN02781 Probable caffeoyl-CoA 98.0 3.4E-05 7.3E-10 79.0 10.3 94 220-320 70-178 (234)
201 PRK11873 arsM arsenite S-adeno 98.0 7E-06 1.5E-10 85.3 5.4 97 477-579 78-183 (272)
202 TIGR00479 rumA 23S rRNA (uraci 98.0 3.1E-05 6.8E-10 86.0 10.8 111 201-320 277-396 (431)
203 COG2230 Cfa Cyclopropane fatty 98.0 1.3E-05 2.8E-10 83.7 7.2 115 459-578 56-175 (283)
204 PF13847 Methyltransf_31: Meth 98.0 6.3E-06 1.4E-10 78.0 4.1 99 476-581 3-112 (152)
205 TIGR01983 UbiG ubiquinone bios 97.9 2E-05 4.3E-10 79.0 7.6 124 450-579 19-149 (224)
206 PRK00274 ksgA 16S ribosomal RN 97.9 2.6E-05 5.6E-10 81.5 8.7 84 203-291 29-114 (272)
207 PF08242 Methyltransf_12: Meth 97.9 3.4E-06 7.3E-11 73.8 1.7 91 481-575 1-99 (99)
208 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 2.5E-05 5.5E-10 77.6 8.0 99 476-579 39-143 (223)
209 PRK14896 ksgA 16S ribosomal RN 97.9 4.6E-05 9.9E-10 79.0 10.0 84 202-292 15-101 (258)
210 TIGR03587 Pse_Me-ase pseudamin 97.9 2.2E-05 4.7E-10 78.7 7.1 96 477-579 44-142 (204)
211 COG0500 SmtA SAM-dependent met 97.9 0.0001 2.3E-09 64.6 10.5 95 222-321 52-156 (257)
212 PRK07402 precorrin-6B methylas 97.9 7.4E-05 1.6E-09 73.9 10.4 111 476-595 40-159 (196)
213 TIGR02085 meth_trns_rumB 23S r 97.9 7.8E-05 1.7E-09 81.5 11.4 95 220-321 235-335 (374)
214 KOG1499 Protein arginine N-met 97.9 4.3E-05 9.3E-10 81.4 8.9 99 220-318 62-165 (346)
215 PRK11783 rlmL 23S rRNA m(2)G24 97.9 3.3E-05 7.3E-10 90.9 8.9 99 220-321 540-657 (702)
216 PRK15128 23S rRNA m(5)C1962 me 97.9 9.5E-05 2.1E-09 81.4 11.9 98 220-320 222-339 (396)
217 PLN02672 methionine S-methyltr 97.9 0.00024 5.3E-09 86.2 16.2 98 220-321 120-279 (1082)
218 PRK05134 bifunctional 3-demeth 97.9 1.5E-05 3.2E-10 80.8 5.0 100 475-580 47-152 (233)
219 PRK04266 fibrillarin; Provisio 97.9 9.6E-05 2.1E-09 75.4 10.7 93 477-578 73-175 (226)
220 TIGR00091 tRNA (guanine-N(7)-) 97.8 2.2E-05 4.8E-10 77.8 5.9 116 477-593 17-147 (194)
221 TIGR00755 ksgA dimethyladenosi 97.8 0.00014 3E-09 75.2 11.9 83 203-292 16-104 (253)
222 COG1041 Predicted DNA modifica 97.8 0.00015 3.4E-09 77.5 12.4 111 206-321 187-311 (347)
223 COG3963 Phospholipid N-methylt 97.8 7.8E-05 1.7E-09 71.8 8.7 116 204-321 36-157 (194)
224 PRK06202 hypothetical protein; 97.8 4.8E-05 1E-09 77.2 7.8 102 475-579 59-166 (232)
225 KOG2904 Predicted methyltransf 97.8 0.00019 4.2E-09 74.1 11.7 118 201-321 130-286 (328)
226 PF10294 Methyltransf_16: Puta 97.8 0.00015 3.1E-09 70.9 10.2 99 218-321 45-157 (173)
227 COG1352 CheR Methylase of chem 97.8 0.00012 2.6E-09 76.3 10.1 103 218-320 96-241 (268)
228 PLN02490 MPBQ/MSBQ methyltrans 97.8 2.6E-05 5.6E-10 84.0 5.3 117 477-599 114-252 (340)
229 PRK14121 tRNA (guanine-N(7)-)- 97.8 6.1E-05 1.3E-09 82.3 8.1 120 476-598 122-256 (390)
230 PRK13942 protein-L-isoaspartat 97.8 3.6E-05 7.7E-10 77.5 5.8 91 476-578 76-175 (212)
231 TIGR00438 rrmJ cell division p 97.8 4E-05 8.7E-10 75.3 5.9 128 477-617 33-186 (188)
232 PRK14967 putative methyltransf 97.8 7.1E-05 1.5E-09 75.7 7.8 120 477-601 37-182 (223)
233 PRK09328 N5-glutamine S-adenos 97.7 8.8E-05 1.9E-09 76.8 8.6 136 477-618 109-275 (275)
234 PRK06922 hypothetical protein; 97.7 2.9E-05 6.4E-10 89.1 5.4 102 477-580 419-538 (677)
235 KOG1540 Ubiquinone biosynthesi 97.7 9E-05 1.9E-09 75.8 8.0 118 470-593 95-229 (296)
236 KOG1661 Protein-L-isoaspartate 97.7 0.00017 3.7E-09 71.8 9.6 102 207-320 71-193 (237)
237 PRK04148 hypothetical protein; 97.7 0.0002 4.4E-09 67.1 9.3 101 206-319 6-108 (134)
238 PF11968 DUF3321: Putative met 97.7 0.0003 6.6E-09 70.7 11.1 133 202-360 33-179 (219)
239 COG2227 UbiG 2-polyprenyl-3-me 97.7 5.3E-05 1.1E-09 77.1 5.4 97 477-580 60-162 (243)
240 PRK11727 23S rRNA mA1618 methy 97.7 0.00074 1.6E-08 72.3 14.2 91 201-294 91-201 (321)
241 PF13649 Methyltransf_25: Meth 97.6 1.2E-05 2.5E-10 70.8 0.3 94 480-573 1-101 (101)
242 cd02440 AdoMet_MTases S-adenos 97.6 7.7E-05 1.7E-09 62.9 5.3 95 479-578 1-103 (107)
243 TIGR03534 RF_mod_PrmC protein- 97.6 0.00013 2.9E-09 74.2 7.9 120 477-599 88-237 (251)
244 TIGR00536 hemK_fam HemK family 97.6 0.00017 3.8E-09 75.7 8.9 135 478-619 116-283 (284)
245 TIGR02469 CbiT precorrin-6Y C5 97.6 0.00012 2.7E-09 65.6 6.7 94 477-578 20-121 (124)
246 TIGR03704 PrmC_rel_meth putati 97.6 0.00016 3.4E-09 74.9 8.3 127 477-606 87-243 (251)
247 TIGR02021 BchM-ChlM magnesium 97.6 9.7E-05 2.1E-09 74.3 6.6 102 475-580 54-159 (219)
248 PRK00216 ubiE ubiquinone/menaq 97.6 0.00015 3.2E-09 72.9 7.9 98 477-579 52-158 (239)
249 PRK11188 rrmJ 23S rRNA methylt 97.6 8E-05 1.7E-09 74.9 6.0 134 477-617 52-205 (209)
250 TIGR03533 L3_gln_methyl protei 97.6 0.00015 3.3E-09 76.3 8.3 121 477-603 122-274 (284)
251 KOG1331 Predicted methyltransf 97.6 3.9E-05 8.5E-10 79.6 3.3 94 221-320 48-143 (293)
252 COG4122 Predicted O-methyltran 97.6 0.0018 3.9E-08 65.7 15.1 94 220-320 61-166 (219)
253 PRK11805 N5-glutamine S-adenos 97.6 0.00016 3.5E-09 77.0 7.9 111 478-594 135-277 (307)
254 PTZ00338 dimethyladenosine tra 97.6 0.00022 4.9E-09 75.5 8.9 83 203-292 23-111 (294)
255 PF03848 TehB: Tellurite resis 97.6 8E-05 1.7E-09 74.0 5.1 95 477-577 31-131 (192)
256 PRK01544 bifunctional N5-gluta 97.6 0.0002 4.2E-09 81.4 8.8 98 219-320 348-462 (506)
257 PLN02476 O-methyltransferase 97.6 0.0006 1.3E-08 71.6 11.7 94 220-320 120-228 (278)
258 TIGR00095 RNA methyltransferas 97.6 0.0018 3.9E-08 64.2 14.4 113 202-321 34-160 (189)
259 PRK07580 Mg-protoporphyrin IX 97.6 0.00026 5.7E-09 71.1 8.6 100 476-579 63-166 (230)
260 TIGR00080 pimt protein-L-isoas 97.6 7.4E-05 1.6E-09 75.2 4.5 93 476-578 77-176 (215)
261 PTZ00146 fibrillarin; Provisio 97.5 0.00042 9.1E-09 73.1 10.1 95 477-578 133-236 (293)
262 PRK14966 unknown domain/N5-glu 97.5 0.00031 6.8E-09 77.4 9.5 138 478-619 253-419 (423)
263 PF07021 MetW: Methionine bios 97.5 8.3E-05 1.8E-09 73.5 4.5 99 468-578 8-108 (193)
264 PF05219 DREV: DREV methyltran 97.5 0.00016 3.5E-09 74.5 6.6 92 476-578 94-187 (265)
265 PF01596 Methyltransf_3: O-met 97.5 0.00044 9.5E-09 69.5 9.6 94 220-320 47-155 (205)
266 PF05185 PRMT5: PRMT5 arginine 97.5 0.00031 6.6E-09 78.6 9.3 93 220-317 188-294 (448)
267 TIGR02081 metW methionine bios 97.5 9.9E-05 2.1E-09 72.9 4.8 89 478-571 15-104 (194)
268 KOG3010 Methyltransferase [Gen 97.5 8.6E-05 1.9E-09 75.4 4.3 115 475-597 32-158 (261)
269 COG2890 HemK Methylase of poly 97.5 0.00043 9.3E-09 72.8 9.3 159 450-618 92-276 (280)
270 TIGR02716 C20_methyl_CrtF C-20 97.4 0.0002 4.3E-09 75.9 6.0 101 475-580 148-255 (306)
271 PF12147 Methyltransf_20: Puta 97.4 0.0018 3.9E-08 67.8 12.7 141 216-360 133-296 (311)
272 PF05148 Methyltransf_8: Hypot 97.4 0.0014 3E-08 65.7 11.4 122 475-620 71-199 (219)
273 KOG1269 SAM-dependent methyltr 97.4 0.00033 7.2E-09 76.1 7.5 96 221-320 113-215 (364)
274 KOG3178 Hydroxyindole-O-methyl 97.4 0.00065 1.4E-08 72.6 9.1 95 219-321 178-276 (342)
275 PRK13944 protein-L-isoaspartat 97.4 0.00023 5E-09 71.2 5.5 90 477-579 73-173 (205)
276 PRK00312 pcm protein-L-isoaspa 97.4 0.00031 6.6E-09 70.4 6.4 90 475-578 77-174 (212)
277 COG2263 Predicted RNA methylas 97.4 0.0015 3.3E-08 64.4 10.8 85 219-309 46-136 (198)
278 COG4106 Tam Trans-aconitate me 97.4 0.00044 9.6E-09 69.3 7.1 147 466-623 21-191 (257)
279 PLN02823 spermine synthase 97.3 0.0016 3.5E-08 70.2 11.7 100 218-320 103-220 (336)
280 COG2813 RsmC 16S RNA G1207 met 97.3 0.013 2.8E-07 62.0 17.9 128 479-618 161-299 (300)
281 PF01170 UPF0020: Putative RNA 97.3 0.0014 3E-08 64.4 9.9 111 204-319 16-150 (179)
282 PF01728 FtsJ: FtsJ-like methy 97.3 0.0014 3.1E-08 63.9 9.5 107 205-321 9-140 (181)
283 PF05175 MTS: Methyltransferas 97.2 0.00032 6.9E-09 68.1 4.4 115 477-592 32-155 (170)
284 COG2264 PrmA Ribosomal protein 97.2 0.0018 4E-08 68.4 10.2 121 476-604 162-289 (300)
285 COG4123 Predicted O-methyltran 97.2 0.0019 4.1E-08 66.6 10.0 120 476-599 44-190 (248)
286 PRK04457 spermidine synthase; 97.2 0.0013 2.9E-08 68.4 9.1 138 475-618 65-216 (262)
287 PF06325 PrmA: Ribosomal prote 97.2 0.00063 1.4E-08 72.1 6.4 128 477-619 162-295 (295)
288 PF02475 Met_10: Met-10+ like- 97.2 0.0019 4.2E-08 64.7 9.5 122 183-317 70-199 (200)
289 TIGR03840 TMPT_Se_Te thiopurin 97.2 0.00055 1.2E-08 69.2 5.7 97 477-577 35-150 (213)
290 TIGR03438 probable methyltrans 97.1 0.00054 1.2E-08 72.7 5.5 100 477-578 64-176 (301)
291 KOG3191 Predicted N6-DNA-methy 97.1 0.0055 1.2E-07 60.1 11.8 99 219-321 44-169 (209)
292 PRK11760 putative 23S rRNA C24 97.1 0.0063 1.4E-07 65.4 13.3 92 218-319 211-304 (357)
293 PF08003 Methyltransf_9: Prote 97.1 0.0014 3E-08 69.2 8.2 105 467-578 107-218 (315)
294 PRK13255 thiopurine S-methyltr 97.1 0.0006 1.3E-08 69.2 5.3 97 477-577 38-153 (218)
295 PRK00536 speE spermidine synth 97.1 0.0049 1.1E-07 64.3 11.8 93 216-320 70-171 (262)
296 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.0023 5.1E-08 67.7 9.7 115 202-321 32-184 (311)
297 PLN02589 caffeoyl-CoA O-methyl 97.0 0.0024 5.2E-08 66.0 9.0 93 220-319 81-189 (247)
298 PF02390 Methyltransf_4: Putat 97.0 0.00063 1.4E-08 67.8 4.4 114 477-594 18-149 (195)
299 PRK04338 N(2),N(2)-dimethylgua 97.0 0.0035 7.6E-08 68.8 10.6 93 220-320 59-158 (382)
300 TIGR01177 conserved hypothetic 97.0 0.0012 2.6E-08 70.9 6.8 114 477-596 183-309 (329)
301 TIGR02143 trmA_only tRNA (urac 97.0 0.0036 7.8E-08 68.0 10.6 110 200-321 182-312 (353)
302 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.0 0.0032 7E-08 65.4 9.6 75 282-359 158-236 (256)
303 PF01728 FtsJ: FtsJ-like methy 97.0 0.0023 5E-08 62.4 7.8 138 475-618 22-180 (181)
304 COG2242 CobL Precorrin-6B meth 97.0 0.0081 1.8E-07 59.3 11.3 144 443-599 2-157 (187)
305 PRK11933 yebU rRNA (cytosine-C 96.9 0.0069 1.5E-07 68.2 12.1 102 214-321 111-243 (470)
306 PF09243 Rsm22: Mitochondrial 96.9 0.0094 2E-07 62.6 12.4 99 218-321 33-140 (274)
307 PF13659 Methyltransf_26: Meth 96.9 0.00033 7.2E-09 62.7 1.0 99 478-578 2-114 (117)
308 TIGR00563 rsmB ribosomal RNA s 96.9 0.0018 3.8E-08 72.1 6.9 102 475-578 237-367 (426)
309 KOG1541 Predicted protein carb 96.9 0.0042 9E-08 62.6 8.7 142 471-616 46-201 (270)
310 COG0421 SpeE Spermidine syntha 96.9 0.015 3.2E-07 61.4 13.3 104 215-320 73-190 (282)
311 PF03602 Cons_hypoth95: Conser 96.9 0.0063 1.4E-07 60.1 9.8 128 185-321 10-154 (183)
312 PF02527 GidB: rRNA small subu 96.8 0.026 5.5E-07 56.0 13.6 90 221-319 51-147 (184)
313 COG0030 KsgA Dimethyladenosine 96.8 0.0053 1.2E-07 63.7 9.2 85 203-292 17-105 (259)
314 KOG3201 Uncharacterized conser 96.8 0.00043 9.2E-09 66.4 1.0 135 219-370 30-175 (201)
315 PF00891 Methyltransf_2: O-met 96.7 0.0019 4.1E-08 65.9 5.3 99 471-580 96-200 (241)
316 PRK05031 tRNA (uracil-5-)-meth 96.7 0.009 2E-07 65.2 10.5 108 202-321 193-321 (362)
317 KOG0820 Ribosomal RNA adenine 96.7 0.0068 1.5E-07 62.9 8.7 83 203-292 45-133 (315)
318 KOG4300 Predicted methyltransf 96.7 0.0085 1.8E-07 59.9 9.1 119 456-581 52-184 (252)
319 KOG2798 Putative trehalase [Ca 96.7 0.014 2.9E-07 61.7 11.0 155 202-361 132-336 (369)
320 PF08123 DOT1: Histone methyla 96.6 0.0039 8.4E-08 62.8 6.6 113 199-318 25-156 (205)
321 TIGR00446 nop2p NOL1/NOP2/sun 96.6 0.004 8.6E-08 64.9 6.8 98 477-578 72-198 (264)
322 TIGR00417 speE spermidine synt 96.6 0.012 2.5E-07 61.6 10.3 142 475-618 71-232 (270)
323 KOG2352 Predicted spermine/spe 96.6 0.016 3.5E-07 64.6 11.7 99 221-321 51-162 (482)
324 PRK10901 16S rRNA methyltransf 96.6 0.0039 8.5E-08 69.4 7.1 103 476-579 244-372 (427)
325 COG1092 Predicted SAM-dependen 96.6 0.01 2.2E-07 65.2 10.2 100 219-321 218-337 (393)
326 COG4627 Uncharacterized protei 96.6 0.0013 2.7E-08 62.9 2.6 59 267-325 32-91 (185)
327 PRK01581 speE spermidine synth 96.5 0.015 3.2E-07 63.3 10.6 148 475-624 149-319 (374)
328 COG0293 FtsJ 23S rRNA methylas 96.5 0.026 5.6E-07 56.7 11.5 103 206-321 34-160 (205)
329 TIGR02987 met_A_Alw26 type II 96.5 0.015 3.3E-07 66.4 11.3 74 219-292 32-122 (524)
330 KOG2915 tRNA(1-methyladenosine 96.5 0.043 9.4E-07 57.1 13.2 127 205-359 94-232 (314)
331 PRK00811 spermidine synthase; 96.5 0.014 2.9E-07 61.6 10.0 142 475-619 75-238 (283)
332 PRK14903 16S rRNA methyltransf 96.5 0.0051 1.1E-07 68.7 6.7 100 476-578 237-365 (431)
333 PLN02585 magnesium protoporphy 96.5 0.0062 1.4E-07 65.2 7.1 97 477-579 145-249 (315)
334 PLN03075 nicotianamine synthas 96.4 0.017 3.7E-07 61.2 9.9 137 476-621 123-277 (296)
335 TIGR00478 tly hemolysin TlyA f 96.4 0.01 2.3E-07 60.6 8.0 108 476-599 75-213 (228)
336 PRK14902 16S rRNA methyltransf 96.4 0.0035 7.7E-08 70.0 4.9 100 477-578 251-378 (444)
337 KOG3045 Predicted RNA methylas 96.3 0.022 4.7E-07 58.8 9.6 108 476-604 180-292 (325)
338 PRK14904 16S rRNA methyltransf 96.3 0.0059 1.3E-07 68.3 6.2 100 477-579 251-377 (445)
339 COG0220 Predicted S-adenosylme 96.3 0.0077 1.7E-07 61.6 6.4 113 478-593 50-180 (227)
340 KOG1270 Methyltransferases [Co 96.3 0.0046 1E-07 63.8 4.5 99 477-581 90-197 (282)
341 COG0742 N6-adenine-specific me 96.3 0.085 1.8E-06 52.3 13.2 131 185-321 11-155 (187)
342 COG0500 SmtA SAM-dependent met 96.3 0.017 3.6E-07 50.5 7.5 95 480-581 52-157 (257)
343 PRK13943 protein-L-isoaspartat 96.3 0.006 1.3E-07 65.5 5.6 93 477-579 81-180 (322)
344 PF01564 Spermine_synth: Sperm 96.3 0.023 5E-07 58.7 9.7 99 218-320 76-191 (246)
345 COG2520 Predicted methyltransf 96.2 0.036 7.7E-07 59.9 11.1 115 195-321 169-290 (341)
346 PRK04148 hypothetical protein; 96.1 0.023 5E-07 53.4 8.1 96 475-604 15-111 (134)
347 KOG1500 Protein arginine N-met 96.1 0.028 6.1E-07 59.8 9.5 96 218-319 177-281 (517)
348 COG1189 Predicted rRNA methyla 96.1 0.056 1.2E-06 55.3 11.3 150 199-359 62-221 (245)
349 PLN02232 ubiquinone biosynthes 96.1 0.0068 1.5E-07 58.3 4.4 70 507-580 3-82 (160)
350 PRK14901 16S rRNA methyltransf 96.0 0.015 3.3E-07 64.9 7.6 115 477-594 253-403 (434)
351 KOG3420 Predicted RNA methylas 96.0 0.016 3.5E-07 55.0 6.4 71 219-292 49-124 (185)
352 TIGR03439 methyl_EasF probable 95.9 0.065 1.4E-06 57.5 11.3 99 221-320 79-197 (319)
353 PLN02781 Probable caffeoyl-CoA 95.9 0.027 5.9E-07 57.7 8.1 128 476-619 68-233 (234)
354 PF05185 PRMT5: PRMT5 arginine 95.8 0.02 4.3E-07 64.3 7.2 121 445-577 151-295 (448)
355 KOG1663 O-methyltransferase [S 95.8 0.079 1.7E-06 53.9 10.6 105 207-320 64-183 (237)
356 PF00398 RrnaAD: Ribosomal RNA 95.8 0.042 9.2E-07 57.1 9.0 102 202-312 16-123 (262)
357 PRK03612 spermidine synthase; 95.7 0.027 5.9E-07 64.4 8.2 123 475-599 296-440 (521)
358 PRK15128 23S rRNA m(5)C1962 me 95.7 0.017 3.7E-07 63.8 6.3 123 477-601 221-367 (396)
359 PRK00050 16S rRNA m(4)C1402 me 95.7 0.028 6.2E-07 59.6 7.7 54 204-262 7-63 (296)
360 COG0144 Sun tRNA and rRNA cyto 95.7 0.099 2.1E-06 57.0 12.0 109 208-321 148-289 (355)
361 KOG2361 Predicted methyltransf 95.7 0.015 3.3E-07 59.4 5.3 97 479-579 74-183 (264)
362 COG2265 TrmA SAM-dependent met 95.7 0.072 1.6E-06 59.5 11.1 112 201-321 278-397 (432)
363 PHA03411 putative methyltransf 95.6 0.016 3.4E-07 60.9 5.0 99 477-578 65-182 (279)
364 PF10672 Methyltrans_SAM: S-ad 95.5 0.06 1.3E-06 57.0 9.2 99 220-321 125-239 (286)
365 PRK13168 rumA 23S rRNA m(5)U19 95.5 0.078 1.7E-06 59.4 10.5 131 477-618 298-442 (443)
366 COG0357 GidB Predicted S-adeno 95.5 0.22 4.8E-06 50.5 12.6 96 219-319 68-167 (215)
367 PF03291 Pox_MCEL: mRNA cappin 95.4 0.014 3.1E-07 62.9 4.3 128 454-589 41-198 (331)
368 PF02527 GidB: rRNA small subu 95.3 0.1 2.2E-06 51.8 9.4 140 451-600 25-172 (184)
369 TIGR00479 rumA 23S rRNA (uraci 95.2 0.046 9.9E-07 60.9 7.6 113 477-599 293-416 (431)
370 COG4798 Predicted methyltransf 95.1 0.095 2E-06 52.2 8.2 106 211-321 43-167 (238)
371 PLN02366 spermidine synthase 95.0 0.039 8.5E-07 59.0 5.9 100 475-578 90-205 (308)
372 PHA03412 putative methyltransf 95.0 0.035 7.7E-07 57.0 5.2 95 478-577 51-160 (241)
373 COG3897 Predicted methyltransf 94.9 0.079 1.7E-06 52.8 7.1 93 219-321 80-179 (218)
374 PF05891 Methyltransf_PK: AdoM 94.9 0.055 1.2E-06 54.8 6.2 126 475-603 54-201 (218)
375 KOG1709 Guanidinoacetate methy 94.7 0.12 2.5E-06 52.3 8.0 111 202-319 88-205 (271)
376 TIGR00308 TRM1 tRNA(guanine-26 94.7 0.076 1.6E-06 58.3 7.4 93 220-320 46-147 (374)
377 KOG1271 Methyltransferases [Ge 94.7 0.051 1.1E-06 53.5 5.2 113 479-593 70-195 (227)
378 PF01739 CheR: CheR methyltran 94.7 0.035 7.5E-07 55.5 4.2 128 450-581 5-177 (196)
379 PRK03522 rumB 23S rRNA methylu 94.5 0.11 2.5E-06 55.4 8.0 129 477-618 174-314 (315)
380 PF05958 tRNA_U5-meth_tr: tRNA 94.5 0.1 2.3E-06 56.7 7.7 68 202-275 183-255 (352)
381 PF01135 PCMT: Protein-L-isoas 94.4 0.024 5.2E-07 57.2 2.5 89 476-578 72-171 (209)
382 KOG1269 SAM-dependent methyltr 94.3 0.082 1.8E-06 57.7 6.4 120 450-578 88-214 (364)
383 COG5459 Predicted rRNA methyla 94.2 0.17 3.7E-06 54.4 8.2 47 275-321 177-226 (484)
384 PF13679 Methyltransf_32: Meth 94.1 0.15 3.2E-06 48.0 6.8 93 218-321 25-132 (141)
385 smart00650 rADc Ribosomal RNA 94.0 0.058 1.3E-06 52.0 4.2 95 475-579 12-113 (169)
386 PF01269 Fibrillarin: Fibrilla 93.8 0.4 8.7E-06 48.8 9.6 99 213-320 70-178 (229)
387 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.5 0.35 7.7E-06 51.0 9.3 108 208-321 77-220 (283)
388 COG2521 Predicted archaeal met 93.5 0.061 1.3E-06 54.9 3.2 141 453-602 116-276 (287)
389 PLN02668 indole-3-acetate carb 93.5 0.21 4.6E-06 54.9 7.7 46 277-323 157-240 (386)
390 COG1064 AdhP Zn-dependent alco 93.4 0.42 9.1E-06 51.7 9.6 97 213-322 163-261 (339)
391 PF09445 Methyltransf_15: RNA 93.4 0.23 5E-06 48.3 6.9 67 221-290 2-77 (163)
392 COG2518 Pcm Protein-L-isoaspar 93.3 0.05 1.1E-06 54.8 2.3 91 475-578 71-168 (209)
393 PF10294 Methyltransf_16: Puta 93.3 0.096 2.1E-06 51.1 4.2 99 475-579 44-156 (173)
394 PF03492 Methyltransf_7: SAM d 93.2 0.47 1E-05 51.4 9.8 82 215-297 13-121 (334)
395 PLN02476 O-methyltransferase 92.8 0.37 8E-06 50.8 8.0 127 476-619 118-278 (278)
396 COG0116 Predicted N6-adenine-s 92.8 1.1 2.5E-05 49.0 12.0 113 207-321 182-345 (381)
397 PRK10909 rsmD 16S rRNA m(2)G96 92.6 0.12 2.6E-06 51.8 3.9 98 478-581 55-161 (199)
398 PF01596 Methyltransf_3: O-met 92.5 0.22 4.8E-06 50.1 5.8 131 476-619 45-205 (205)
399 PF04672 Methyltransf_19: S-ad 92.2 0.92 2E-05 47.5 9.9 101 218-321 68-191 (267)
400 PF05724 TPMT: Thiopurine S-me 92.1 0.34 7.4E-06 49.3 6.5 123 475-602 36-189 (218)
401 PLN02672 methionine S-methyltr 92.0 0.25 5.4E-06 60.8 6.3 119 478-598 120-298 (1082)
402 COG4122 Predicted O-methyltran 91.9 0.38 8.2E-06 49.0 6.5 135 476-619 59-218 (219)
403 PRK11933 yebU rRNA (cytosine-C 91.6 0.29 6.3E-06 55.3 5.9 99 475-578 112-241 (470)
404 PF06859 Bin3: Bicoid-interact 91.5 0.11 2.4E-06 47.1 1.9 45 282-328 1-50 (110)
405 PLN02823 spermine synthase 91.3 1.2 2.7E-05 48.2 10.1 99 475-578 102-219 (336)
406 COG4076 Predicted RNA methylas 91.2 0.37 8.1E-06 47.8 5.4 94 221-319 35-134 (252)
407 PF12147 Methyltransf_20: Puta 91.1 0.52 1.1E-05 49.8 6.7 131 471-601 130-277 (311)
408 PF03059 NAS: Nicotianamine sy 91.0 1.3 2.8E-05 46.7 9.6 98 219-320 121-230 (276)
409 KOG3115 Methyltransferase-like 90.7 0.35 7.5E-06 48.6 4.7 20 221-240 63-82 (249)
410 COG2519 GCD14 tRNA(1-methylade 90.6 1.4 3E-05 45.8 9.2 105 477-596 95-213 (256)
411 TIGR01444 fkbM_fam methyltrans 90.3 0.35 7.6E-06 44.7 4.2 37 221-260 1-39 (143)
412 KOG1975 mRNA cap methyltransfe 90.2 0.8 1.7E-05 49.0 7.1 60 538-598 195-257 (389)
413 KOG2187 tRNA uracil-5-methyltr 90.1 0.37 8.1E-06 54.3 4.8 68 201-273 368-440 (534)
414 PF13578 Methyltransf_24: Meth 90.0 0.091 2E-06 46.4 0.0 95 223-319 1-104 (106)
415 COG4262 Predicted spermidine s 90.0 1.3 2.9E-05 48.1 8.7 100 219-321 290-408 (508)
416 PRK13256 thiopurine S-methyltr 89.7 0.31 6.7E-06 49.9 3.6 97 477-577 44-161 (226)
417 PRK00536 speE spermidine synth 89.6 1.7 3.7E-05 45.5 9.0 94 471-578 68-170 (262)
418 PF05971 Methyltransf_10: Prot 89.0 2.8 6.1E-05 44.7 10.3 89 201-292 82-187 (299)
419 KOG1499 Protein arginine N-met 89.0 0.43 9.2E-06 51.5 4.1 97 476-577 60-165 (346)
420 TIGR02085 meth_trns_rumB 23S r 88.9 2.7 5.9E-05 46.1 10.5 125 478-616 235-372 (374)
421 cd08283 FDH_like_1 Glutathione 88.9 4 8.6E-05 44.5 11.8 104 212-321 180-307 (386)
422 KOG2904 Predicted methyltransf 88.8 2.6 5.7E-05 44.3 9.5 158 452-618 128-327 (328)
423 COG1889 NOP1 Fibrillarin-like 88.6 8.2 0.00018 39.1 12.4 100 212-320 72-180 (231)
424 PF06962 rRNA_methylase: Putat 88.6 2.8 6E-05 39.8 8.9 96 243-353 2-113 (140)
425 PF06080 DUF938: Protein of un 88.6 0.63 1.4E-05 46.9 4.8 134 479-618 28-204 (204)
426 cd08254 hydroxyacyl_CoA_DH 6-h 88.5 3.9 8.4E-05 42.8 11.0 96 214-321 163-264 (338)
427 PRK00274 ksgA 16S ribosomal RN 88.2 0.33 7.1E-06 50.8 2.6 41 477-520 43-83 (272)
428 COG0357 GidB Predicted S-adeno 87.9 5.7 0.00012 40.4 11.2 157 423-604 31-196 (215)
429 PF01269 Fibrillarin: Fibrilla 87.8 1.5 3.3E-05 44.7 7.0 133 476-616 73-224 (229)
430 COG0286 HsdM Type I restrictio 87.6 3.6 7.8E-05 46.9 10.7 119 201-321 171-327 (489)
431 PF04816 DUF633: Family of unk 87.5 5 0.00011 40.5 10.5 115 222-360 1-122 (205)
432 PRK10742 putative methyltransf 87.3 2.5 5.5E-05 43.9 8.4 83 207-292 77-174 (250)
433 PF07091 FmrO: Ribosomal RNA m 87.3 4.5 9.8E-05 42.0 10.2 126 219-356 106-238 (251)
434 PF07757 AdoMet_MTase: Predict 86.7 0.91 2E-05 41.2 4.1 28 219-246 59-86 (112)
435 PF03269 DUF268: Caenorhabditi 86.6 0.51 1.1E-05 45.8 2.6 42 280-321 61-112 (177)
436 PRK14896 ksgA 16S ribosomal RN 86.2 0.71 1.5E-05 47.9 3.8 42 476-520 29-70 (258)
437 KOG2793 Putative N2,N2-dimethy 86.1 5.9 0.00013 41.2 10.3 102 219-321 87-200 (248)
438 KOG2198 tRNA cytosine-5-methyl 86.1 8.6 0.00019 42.0 11.8 132 213-359 152-325 (375)
439 KOG1331 Predicted methyltransf 86.0 0.62 1.4E-05 49.0 3.1 95 477-578 46-142 (293)
440 PF10354 DUF2431: Domain of un 85.4 7 0.00015 38.1 10.0 93 225-321 3-126 (166)
441 PRK09424 pntA NAD(P) transhydr 85.3 5.1 0.00011 45.9 10.3 97 219-321 165-286 (509)
442 PF08704 GCD14: tRNA methyltra 84.9 1.1 2.4E-05 46.4 4.4 112 471-598 38-166 (247)
443 KOG3115 Methyltransferase-like 84.9 1.5 3.2E-05 44.2 5.0 23 559-581 163-185 (249)
444 PF01861 DUF43: Protein of unk 84.7 27 0.00058 36.3 14.1 133 202-356 28-172 (243)
445 PRK11760 putative 23S rRNA C24 84.3 8.8 0.00019 41.8 10.9 90 476-578 211-304 (357)
446 PRK09880 L-idonate 5-dehydroge 84.2 6.3 0.00014 42.1 10.0 92 220-321 171-267 (343)
447 KOG4589 Cell division protein 84.0 5.1 0.00011 40.0 8.2 23 215-239 68-90 (232)
448 PF07942 N2227: N2227-like pro 83.7 9.2 0.0002 40.3 10.6 122 476-600 56-239 (270)
449 KOG1122 tRNA and rRNA cytosine 83.6 2.5 5.5E-05 46.8 6.5 104 215-323 238-374 (460)
450 cd08230 glucose_DH Glucose deh 83.5 7.6 0.00016 41.6 10.3 93 220-321 174-270 (355)
451 COG1189 Predicted rRNA methyla 83.4 8 0.00017 40.0 9.7 117 476-600 79-221 (245)
452 TIGR02822 adh_fam_2 zinc-bindi 82.4 11 0.00024 40.1 11.0 92 213-321 162-255 (329)
453 KOG1562 Spermidine synthase [A 82.4 1.9 4.1E-05 45.7 4.8 101 218-320 121-236 (337)
454 TIGR00755 ksgA dimethyladenosi 82.1 0.96 2.1E-05 46.7 2.6 43 475-520 28-70 (253)
455 COG1092 Predicted SAM-dependen 81.8 2.3 5E-05 47.0 5.6 146 450-601 195-364 (393)
456 TIGR00006 S-adenosyl-methyltra 80.7 6.8 0.00015 42.0 8.5 54 204-262 8-63 (305)
457 KOG2940 Predicted methyltransf 80.1 1.5 3.3E-05 44.9 3.1 98 475-578 71-173 (325)
458 PF00107 ADH_zinc_N: Zinc-bind 79.7 3.6 7.9E-05 37.1 5.3 84 228-322 1-91 (130)
459 COG4301 Uncharacterized conser 79.5 21 0.00046 37.2 11.0 99 220-320 80-193 (321)
460 PHA01634 hypothetical protein 78.5 12 0.00025 35.3 8.1 67 219-288 29-98 (156)
461 PRK13699 putative methylase; P 78.0 4.7 0.0001 41.2 6.1 50 558-619 51-100 (227)
462 TIGR02143 trmA_only tRNA (urac 78.0 18 0.00038 39.5 10.8 125 479-617 200-351 (353)
463 PRK10611 chemotaxis methyltran 78.0 1.7 3.8E-05 46.1 2.9 44 537-581 221-264 (287)
464 KOG2730 Methylase [General fun 77.1 6 0.00013 40.5 6.2 92 221-318 97-200 (263)
465 COG0421 SpeE Spermidine syntha 76.5 8.6 0.00019 40.8 7.6 121 471-596 72-212 (282)
466 PF03514 GRAS: GRAS domain fam 76.2 45 0.00098 36.7 13.4 111 207-319 101-243 (374)
467 PRK04338 N(2),N(2)-dimethylgua 76.2 2.5 5.4E-05 46.7 3.7 91 478-578 59-157 (382)
468 TIGR03451 mycoS_dep_FDH mycoth 75.4 17 0.00036 39.1 9.8 95 214-321 174-277 (358)
469 COG1889 NOP1 Fibrillarin-like 75.3 27 0.00059 35.5 10.2 135 476-619 76-229 (231)
470 PTZ00338 dimethyladenosine tra 75.3 2.6 5.5E-05 44.9 3.3 41 477-520 37-77 (294)
471 cd05188 MDR Medium chain reduc 74.9 26 0.00057 34.9 10.6 89 220-321 136-233 (271)
472 TIGR02825 B4_12hDH leukotriene 74.7 37 0.0008 35.7 12.0 98 211-321 133-238 (325)
473 PF13578 Methyltransf_24: Meth 74.6 1 2.2E-05 39.7 0.1 95 481-579 1-105 (106)
474 cd08281 liver_ADH_like1 Zinc-d 74.4 16 0.00034 39.5 9.3 96 213-321 188-291 (371)
475 PF02475 Met_10: Met-10+ like- 74.2 2.1 4.6E-05 43.0 2.2 89 477-575 102-198 (200)
476 PF04445 SAM_MT: Putative SAM- 74.2 6.3 0.00014 40.7 5.7 83 207-292 64-161 (234)
477 PRK11524 putative methyltransf 74.1 2.7 5.8E-05 44.3 3.2 52 267-318 10-78 (284)
478 cd08245 CAD Cinnamyl alcohol d 73.0 29 0.00063 36.3 10.7 92 220-321 164-257 (330)
479 cd08234 threonine_DH_like L-th 72.5 27 0.00058 36.6 10.3 97 212-321 155-258 (334)
480 KOG0822 Protein kinase inhibit 71.8 8.6 0.00019 43.9 6.4 100 219-319 368-477 (649)
481 COG4627 Uncharacterized protei 71.3 1.5 3.3E-05 42.4 0.4 44 534-578 41-85 (185)
482 COG1063 Tdh Threonine dehydrog 71.2 18 0.00038 39.3 8.7 91 221-321 171-270 (350)
483 PF01564 Spermine_synth: Sperm 71.1 31 0.00068 35.6 10.1 142 475-620 75-239 (246)
484 PF01555 N6_N4_Mtase: DNA meth 70.4 8.5 0.00018 37.8 5.6 54 202-261 178-231 (231)
485 TIGR02987 met_A_Alw26 type II 70.1 30 0.00064 39.7 10.6 143 476-619 31-247 (524)
486 COG3129 Predicted SAM-dependen 69.9 13 0.00029 38.3 6.8 105 187-293 42-164 (292)
487 TIGR00561 pntA NAD(P) transhyd 69.9 12 0.00027 42.8 7.4 95 219-319 164-283 (511)
488 TIGR03366 HpnZ_proposed putati 69.9 27 0.00058 36.1 9.5 91 220-320 122-218 (280)
489 cd08239 THR_DH_like L-threonin 69.8 26 0.00057 37.0 9.6 98 212-321 159-263 (339)
490 KOG3201 Uncharacterized conser 69.4 4.7 0.0001 39.4 3.3 117 476-600 29-163 (201)
491 PLN03154 putative allyl alcoho 69.0 47 0.001 35.7 11.4 96 213-321 155-259 (348)
492 cd08232 idonate-5-DH L-idonate 68.8 30 0.00064 36.5 9.7 91 220-321 167-263 (339)
493 COG1565 Uncharacterized conser 68.8 6.7 0.00014 42.9 4.7 78 182-262 43-128 (370)
494 KOG2920 Predicted methyltransf 68.6 4.4 9.5E-05 42.8 3.2 40 282-321 196-235 (282)
495 PF13679 Methyltransf_32: Meth 68.4 4.1 9E-05 38.1 2.7 58 461-520 6-72 (141)
496 PF06859 Bin3: Bicoid-interact 67.5 1.6 3.4E-05 39.8 -0.3 60 540-599 2-72 (110)
497 COG0604 Qor NADPH:quinone redu 67.2 27 0.00058 37.6 9.0 101 208-321 134-242 (326)
498 PLN02740 Alcohol dehydrogenase 66.9 35 0.00075 37.1 9.9 97 213-321 195-301 (381)
499 PF10672 Methyltrans_SAM: S-ad 66.6 8.2 0.00018 41.0 4.8 120 477-601 124-266 (286)
500 cd08237 ribitol-5-phosphate_DH 66.2 26 0.00056 37.5 8.7 92 215-321 162-257 (341)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=8.8e-151 Score=1214.07 Aligned_cols=500 Identities=64% Similarity=1.180 Sum_probs=485.5
Q ss_pred CccccCCchhhccc--ccchhhhhhcCCCCCCCccceecCCCCCCCCCCCCCCccccccccCCCCchhhHHHHhcchhhc
Q 006662 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRF 183 (636)
Q Consensus 106 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~r~~clvp~P~~Y~~P~~wP~Srd~~wy~n~p~~~L~~~k~~q~w~~~ 183 (636)
||+||+|+.++++| +++++++||||||+.+++++||||+|+||+.||+||+|||++||+|+||++|+.+|+.|||++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCCCCCCcccHHHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH
Q 006662 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 184 ~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e 261 (636)
+|+.+.|||||++|+.|++.|++.|.++++. ..+..|++||||||+|+|+++|++++++++++++.|.+++++|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999987 67788999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHH
Q 006662 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKS 341 (636)
Q Consensus 262 rg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~ 341 (636)
||+++.+.++...+|||++++||+|||++|+++|.++.+.+|.|++|+|||||+|++++||.+ +++.+++.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999998889999999999999999999999998889999999999999999999999887 366788899
Q ss_pred HHHHHHHHHHHhceEeecccccEEEEeCCCCCcccccccccCCCCCCcc-CCCcCCccccccccccccCccCchhhhhcC
Q 006662 342 EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWYTKMETCLTPLPEVSNIKEIAG 420 (636)
Q Consensus 342 ~~~~ie~la~~l~Wk~v~~~~~~aIWqKp~~~~~c~~~r~~~~~~~~C~-~~~~~~~wy~~~~~ci~~~p~~~~~~~~~~ 420 (636)
+|++|++++++|||++++++++++|||||.+| +||.+|+..+.|++|+ ++|||++||++|++||+++|++.+ +.++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~ 309 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccc
Confidence 99999999999999999999999999999998 9999998888999999 899999999999999999998754 7889
Q ss_pred CccccCccccccCCcccccCcccCcchhcchhhHHHHHHHHHHHHHhhh-ccCCCCCcceEeeecccchhhhhhhcCCCe
Q 006662 421 GQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDY-QLAQPGRYRNLLDMNAYLGGFAAALVDDPL 499 (636)
Q Consensus 421 ~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~-~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v 499 (636)
+++++||+||+++|+||+++++.|+++|.|++|+++|+++|++|+++++ .|++ ++||||||||||+|||||||+++||
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~V 388 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDPV 388 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999887 5888 9999999999999999999999999
Q ss_pred EEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 500 WVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 500 ~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|||||||+.++ |||++||||||||+||||||+|+|||||||||||+||||.|++||++++||+||||||||||++||||
T Consensus 389 WVMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 389 WVMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred eEEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 99999999887 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 580 DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 580 ~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
+++++.+|++|+++|+|+++++|+|+||+++||||||||
T Consensus 468 ~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 468 TVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred cHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.97 E-value=2.7e-32 Score=295.60 Aligned_cols=197 Identities=19% Similarity=0.333 Sum_probs=151.4
Q ss_pred ccccccccCccCchhhhhcCCccccCccccccCC------cccccCcccC------cchh--cchhhHHHHHHHHHHHHH
Q 006662 401 KMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIP------PRVNRGAVDG------VTAE--MFREDTALWKKRVTYYKS 466 (636)
Q Consensus 401 ~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p------~~~~~~~~~~------~~~~--~f~~d~~~w~~~v~~y~~ 466 (636)
+...|+.|.|.. ...+.+||+....+. +.|+. ..+ ...+ .|......+++.+.+|..
T Consensus 33 ~~~~CLVp~P~g-------Yk~P~~WP~SRd~iW~~Nvph~~L~~--~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid 103 (506)
T PF03141_consen 33 ERLRCLVPPPKG-------YKTPIPWPKSRDYIWYANVPHTKLAE--EKADQNWVRVEGDKFRFPGGGTMFPHGADHYID 103 (506)
T ss_pred CCCccccCCCcc-------CCCCCCCCcccceeeecccCchHHhh--hcccccceeecCCEEEeCCCCccccCCHHHHHH
Confidence 456788887742 356788888775441 11211 001 0011 244445555556666664
Q ss_pred hhh----ccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-Cccc
Q 006662 467 VDY----QLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYD 541 (636)
Q Consensus 467 ~~~----~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~D 541 (636)
.+. .+.++|.+|++||+|||+|+|||+|.+++|.+|+++|.+.+++++|+|+|||++.++........+|| ++||
T Consensus 104 ~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 104 QIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred HHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchh
Confidence 332 23456899999999999999999999999999999999999999999999999888877777778888 9999
Q ss_pred eeeeccccccCCCCcCHH------HHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCCceEEeccCC
Q 006662 542 LIHADSIFSLYKDRCEME------DVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEGRIADHEN 605 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~------~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~~~~~~e~ 605 (636)
|+|| +||.++ .+|+|+|||||||||||++. ..+++++|++++++|||+....
T Consensus 184 mvHc--------src~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~---- 251 (506)
T PF03141_consen 184 MVHC--------SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE---- 251 (506)
T ss_pred hhhc--------ccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----
Confidence 9999 777765 79999999999999999973 3568999999999999999884
Q ss_pred CCCCcceEEEEEecCCC
Q 006662 606 GPRQREKILFANKKYWT 622 (636)
Q Consensus 606 ~~~~~~~~l~~~K~~w~ 622 (636)
+..+.|+||+.=.
T Consensus 252 ----~~~~aIwqKp~~~ 264 (506)
T PF03141_consen 252 ----KGDTAIWQKPTNN 264 (506)
T ss_pred ----eCCEEEEeccCCc
Confidence 4459999998744
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.84 E-value=5.3e-20 Score=205.28 Aligned_cols=328 Identities=12% Similarity=0.144 Sum_probs=183.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccc--cCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASI--RLPYPS 280 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~--~Lpf~~ 280 (636)
..+.+.++..++. +|||||||+|.++..|++....++++ |+++.+++.+.+.. .++.+...+.. .+++++
T Consensus 27 ~~il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~gi---D~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGK--SVLELGAGIGRFTGELAKKAGQVIAL---DFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCC--EEEEeCCCcCHHHHHHHhhCCEEEEE---eCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 3455555444443 89999999999999999987666667 88999998775432 34677777764 467888
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
++||+|+|+.+++|+.++. ..++.++.|+|||||++++............. ......+.. ...+.+++...++....
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~-~~~~~~~~~-~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR-KNNPTHYRE-PRFYTKVFKECHTRDED 179 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc-cCCCCeecC-hHHHHHHHHHheeccCC
Confidence 9999999999997765432 78999999999999999998642211100000 001111111 22344555555554443
Q ss_pred ccc-c-EEEEeCCCCCcccccccccCCCCCCccCCCcCCccccccccccccCccCchhhhhcCCccccCccccccCCccc
Q 006662 360 QKK-D-LAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRV 437 (636)
Q Consensus 360 ~~~-~-~aIWqKp~~~~~c~~~r~~~~~~~~C~~~~~~~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~~ 437 (636)
... . ...+.++.+ -|...+.. ...|..+..=++.. + -..+..+=+|+.-.++.|
T Consensus 180 ~~~~~~~~~~~~~~~---~~~~~~~~------------~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~y~~~~i 235 (475)
T PLN02336 180 GNSFELSLVGCKCIG---AYVKNKKN------------QNQICWLWQKVSST-------N--DKGFQRFLDNVQYKSSGI 235 (475)
T ss_pred CCEEEEEEEEeechh---hhhhccCC------------cceEEEEEEeecCC-------c--chhHHHHhhhhccccccH
Confidence 221 1 123333332 12111100 00111111100000 0 001111111211111111
Q ss_pred ccCcccCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHH
Q 006662 438 NRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI 517 (636)
Q Consensus 438 ~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~ 517 (636)
.. .+.|-...-.+...|..-+.++..+.. .....|||+|||.|+++..|++.. -.+|+.+|.++.++..+
T Consensus 236 ~~-------~~~f~g~~~~v~~~v~~te~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A 305 (475)
T PLN02336 236 LR-------YERVFGEGFVSTGGLETTKEFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFA 305 (475)
T ss_pred HH-------HHHHhCCCCCCCchHHHHHHHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHH
Confidence 00 011111111111222222333333333 346789999999999999888752 23677778777888888
Q ss_pred Hhhc--c---cchh-hccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 518 YERG--L---IGTY-QNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 518 ~eRg--l---i~~~-~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.++- + +... .|+.+ .++| .+||+|.+.+++-... +.+.+|-|+.|+|||||.++|.|
T Consensus 306 ~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 306 LERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQ---DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred HHHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECCcccccC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 6653 2 1121 13222 2355 7899999987775544 45899999999999999999985
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=6.7e-15 Score=149.66 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=92.1
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcCCC-----eEEEEeccccCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVP-----ALIGVMASIRLPY 278 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg~~-----~~~~~~d~~~Lpf 278 (636)
+.+.+.+...+|. +|||||||||.++..+++.. ..++.+ |+|+.|++.|+++... +.+.++|++.|||
T Consensus 41 ~~~i~~~~~~~g~--~vLDva~GTGd~a~~~~k~~g~g~v~~~---D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 41 RALISLLGIKPGD--KVLDVACGTGDMALLLAKSVGTGEVVGL---DISESMLEVAREKLKKKGVQNVEFVVGDAENLPF 115 (238)
T ss_pred HHHHHhhCCCCCC--EEEEecCCccHHHHHHHHhcCCceEEEE---ECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence 3444554444454 99999999999999999984 445555 9999999999987543 7899999999999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++||+|.+++.| +..++.+.+|+|++|||||||.+++...
T Consensus 116 ~D~sFD~vt~~fgl-rnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 116 PDNSFDAVTISFGL-RNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCccCEEEeeehh-hcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 99999999999999 4455999999999999999999998753
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=1.1e-14 Score=124.82 Aligned_cols=92 Identities=27% Similarity=0.431 Sum_probs=79.3
Q ss_pred EEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 006662 223 IDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (636)
Q Consensus 223 LDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~ 299 (636)
||+|||+|.++..|+++ +..++.+ |+++++++.++++.. ...+...+...+|+++++||+|++..+++|+ +++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~---D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGI---DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEE---ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999999999 7777777 999999999988754 3568889999999999999999999999666 678
Q ss_pred HHHHHHHHhcccCCcEEEE
Q 006662 300 GLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 300 ~~~L~el~RvLKPGG~Lii 318 (636)
..+++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.53 E-value=3.5e-14 Score=144.75 Aligned_cols=109 Identities=27% Similarity=0.367 Sum_probs=79.3
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPY 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~Lpf 278 (636)
.+.+.+...++. +|||+|||||.++..++++ ...++++ |+++.|++.|+++. .++.+.++|++.+|+
T Consensus 38 ~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~v---D~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 38 KLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGV---DISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEE---ES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEe---cCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 445555445555 9999999999999999886 2355566 99999999998652 368999999999999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++||+|+|++.+... ++...+++|+.|+|||||.+++...
T Consensus 113 ~d~sfD~v~~~fglrn~-~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNF-PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -TT-EEEEEEES-GGG--SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhh-CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 99999999999999555 5889999999999999999999753
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=6.2e-14 Score=141.05 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=109.4
Q ss_pred CCCCchh-hHHHHhcchhhccCCceecCCCCCCCcccHHHHHHHHHHh-hccCCCCCcEEEEeCCCCcHHHHHHhhcCCE
Q 006662 165 NVPHKEL-TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKL-INLKDGSIRTAIDTGCGVASWGAYLMSRNIL 242 (636)
Q Consensus 165 n~p~~~L-~~~k~~q~w~~~~g~~~~F~ggg~~f~~g~~~~id~L~~l-L~l~~g~~r~VLDIGCGtG~~a~~La~~~v~ 242 (636)
|+++..+ ...+..+.||+..|+.-.. .. +-.....++...... .. -.+.+|||||||-|.++..||+.|..
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~L-H~---~N~~rl~~i~~~~~~~~~---l~g~~vLDvGCGgG~Lse~mAr~Ga~ 83 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPL-HK---INPLRLDYIREVARLRFD---LPGLRVLDVGCGGGILSEPLARLGAS 83 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeee-ee---eccchhhhhhhhhhcccC---CCCCeEEEecCCccHhhHHHHHCCCe
Confidence 4555444 3455678899977754332 11 111122333332221 11 12348999999999999999999988
Q ss_pred EEEcCcCCchHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEE
Q 006662 243 AVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 243 vv~i~p~Dis~a~l~~A~e----rg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Lii 318 (636)
++++ |+++..++.|+. .++.+.+....++++....++||+|+|..+++|.. +++.+++.+.+++||||.+++
T Consensus 84 Vtgi---D~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~-dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 84 VTGI---DASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP-DPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred eEEe---cCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC-CHHHHHHHHHHHcCCCcEEEE
Confidence 8888 999999998873 45566677777777776668999999999998875 999999999999999999999
Q ss_pred EeCCCCc
Q 006662 319 SGPPVNW 325 (636)
Q Consensus 319 s~p~~~w 325 (636)
+++..++
T Consensus 160 STinrt~ 166 (243)
T COG2227 160 STINRTL 166 (243)
T ss_pred eccccCH
Confidence 9875443
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=2.1e-13 Score=139.66 Aligned_cols=114 Identities=20% Similarity=0.301 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~ 281 (636)
....+.+.+.++... ..+|||+|||+|.++..+++.+..++.+ |+++.+++.++++.....+..+|...+|++++
T Consensus 28 ~~~a~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~~---D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~ 102 (251)
T PRK10258 28 RQSADALLAMLPQRK--FTHVLDAGCGPGWMSRYWRERGSQVTAL---DLSPPMLAQARQKDAADHYLAGDIESLPLATA 102 (251)
T ss_pred HHHHHHHHHhcCccC--CCeEEEeeCCCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHhhCCCCCEEEcCcccCcCCCC
Confidence 334455566654332 3489999999999999999887777777 99999999998876556678889989999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|+++.++ +|..++..++.++.|+|||||.++++.+
T Consensus 103 ~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 103 TFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred cEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999999888 7888899999999999999999999976
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.49 E-value=3.3e-13 Score=143.69 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=103.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC------CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG------VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+.+|||||||+|.++..|++.+..++++ |+++.+++.|+++. ..+.+...+.+.+++++++||+|+|..++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GI---D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGV---DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3589999999999999999888777777 89999999887542 25678888888888888899999999999
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeCCCCcccc---------ccCCCCchh-hh--HHHHHHHHHHHHHhceEeecc
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH---------WKGWNRTTE-DL--KSEQNGIETIARSLCWKKLIQ 360 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~---------~~~W~~t~e-~l--~~~~~~ie~la~~l~Wk~v~~ 360 (636)
+|+. ++..+++++.++|||||.++++......... ...|..... .. ....+++..+++..+++.+..
T Consensus 209 eHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 7765 8899999999999999999999764432100 001111110 00 123456778888888877654
Q ss_pred c
Q 006662 361 K 361 (636)
Q Consensus 361 ~ 361 (636)
.
T Consensus 288 ~ 288 (322)
T PLN02396 288 A 288 (322)
T ss_pred e
Confidence 3
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=8.4e-14 Score=144.35 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lp 277 (636)
.+..+.+.+.+.+.++. +|||||||+|..+..+++. +..++++ |+++.+++.|+++. ..+.+...|....|
T Consensus 38 ~~~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~ 112 (263)
T PTZ00098 38 IEATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGV---DICEKMVNIAKLRNSDKNKIEFEANDILKKD 112 (263)
T ss_pred hHHHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEE---ECCHHHHHHHHHHcCcCCceEEEECCcccCC
Confidence 33456666777666665 8999999999999999875 5566666 88999999988763 24778888888889
Q ss_pred CCCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|++..+++|+.. +...+++++.++|||||+|+++.+
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999999999888877753 668999999999999999999865
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.47 E-value=4.5e-13 Score=138.81 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=88.6
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHcC--------CCeEEEEeccccC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERG--------VPALIGVMASIRL 276 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~erg--------~~~~~~~~d~~~L 276 (636)
+.+.+...++. +|||+|||+|.++..++++ + ..++++ |++++|++.|+++. .++.+..++...+
T Consensus 65 ~~~~~~~~~~~--~VLDlGcGtG~~~~~la~~~~~~~~V~gv---D~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 65 AVSWSGAKMGD--RVLDLCCGSGDLAFLLSEKVGSDGKVMGL---DFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 34444444444 9999999999999998875 3 356666 89999999987542 2578888999999
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+++++||+|+++.+++++ +++..+++++.|+|||||++++...
T Consensus 140 p~~~~sfD~V~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNV-VDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCCEeEEEEecccccC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999999999555 5889999999999999999999864
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=1.1e-12 Score=140.82 Aligned_cols=115 Identities=18% Similarity=0.270 Sum_probs=92.2
Q ss_pred HHHHHHHHhhccC---CCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEec
Q 006662 203 AYIDDIGKLINLK---DGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMA 272 (636)
Q Consensus 203 ~~id~L~~lL~l~---~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d 272 (636)
..++.+.+.+.+. ...+.+|||||||+|.++..|+++ +..++++ |+++.+++.++++ +. ++.+.++|
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gv---D~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGI---TLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 3445555555441 123458999999999999999986 6677777 8899998877643 32 57888999
Q ss_pred cccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+|+++++||+|++..+++|+. +...+++++.|+|||||.|++...
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999997765 788999999999999999999864
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.44 E-value=4.6e-13 Score=126.13 Aligned_cols=145 Identities=22% Similarity=0.423 Sum_probs=101.1
Q ss_pred HHHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006662 204 YIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 204 ~id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~s 282 (636)
+.+.+.++.+ ..++ .+|||||||+|.++..|++.+..++++ |+++.+++. ........+....+.++++
T Consensus 9 ~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~g~---D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 78 (161)
T PF13489_consen 9 YADLLERLLPRLKPG--KRVLDIGCGTGSFLRALAKRGFEVTGV---DISPQMIEK-----RNVVFDNFDAQDPPFPDGS 78 (161)
T ss_dssp HHHHHHHHHTCTTTT--SEEEEESSTTSHHHHHHHHTTSEEEEE---ESSHHHHHH-----TTSEEEEEECHTHHCHSSS
T ss_pred HHHHHHHHhcccCCC--CEEEEEcCCCCHHHHHHHHhCCEEEEE---ECCHHHHhh-----hhhhhhhhhhhhhhccccc
Confidence 4445555554 2333 499999999999999999998877777 888888877 2233443334455567899
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCc--cccccCCC--Cc--hhhhHHHHHHHHHHHHHhceE
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNW--ESHWKGWN--RT--TEDLKSEQNGIETIARSLCWK 356 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w--~~~~~~W~--~t--~e~l~~~~~~ie~la~~l~Wk 356 (636)
||+|+|+.+++|.. ++..+|+++.++|||||+++++.+.... ......|. .. ........+.+..+++..+++
T Consensus 79 fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 79 FDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp EEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred hhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence 99999999996665 7899999999999999999999875421 10000011 11 111223356788899999988
Q ss_pred eec
Q 006662 357 KLI 359 (636)
Q Consensus 357 ~v~ 359 (636)
.+.
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=1.3e-12 Score=134.42 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=86.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sF 283 (636)
..+.+.+...++. +|||||||+|.++..|+++ +..++++ |+++.+++.|++++ +.+..+|...++ ++++|
T Consensus 19 ~~ll~~l~~~~~~--~vLDlGcG~G~~~~~l~~~~p~~~v~gv---D~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERAR--RVVDLGCGPGNLTRYLARRWPGAVIEAL---DSSPEMVAAARERG--VDARTGDVRDWK-PKPDT 90 (255)
T ss_pred HHHHHhCCCCCCC--EEEEEcCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCc
Confidence 3455555544444 8999999999999999987 5566677 99999999998765 566677777664 56799
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|+|+.++ ||.+++..+++++.++|||||++++..+
T Consensus 91 D~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAAL-QWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhh-hhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999999 5556889999999999999999999865
No 15
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.39 E-value=5.1e-11 Score=134.32 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=155.5
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
.+|||+|||+|.++..++.. +..++.+ |+++.+++.|+++ +. .+.+...|... +++.++||+|+|+.-
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~av---Dis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIAT---DISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEE---ECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCC
Confidence 48999999999999998875 4556666 8899999888755 32 35566666432 234568999999643
Q ss_pred cccccc---------------------Ch----HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHH
Q 006662 292 LIPWGQ---------------------YD----GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGI 346 (636)
Q Consensus 292 L~h~~~---------------------d~----~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~i 346 (636)
...... +. ..++.++.++|+|||.+++.... . ..+.+
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-----------~-------q~~~v 277 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-----------K-------QEEAV 277 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-----------c-------hHHHH
Confidence 321110 01 24677888999999999987430 0 12235
Q ss_pred HHHHHHhceEeecccccEEEEeCCCCCcccccccccCCCCCCccCCCcCCccccccccccccCccCchhhhhcCCccccC
Q 006662 347 ETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKW 426 (636)
Q Consensus 347 e~la~~l~Wk~v~~~~~~aIWqKp~~~~~c~~~r~~~~~~~~C~~~~~~~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~w 426 (636)
.+++...+|+.+. ++ |..+. ..|- -.+. ..++... .+ ...|..
T Consensus 278 ~~~~~~~g~~~~~------~~-~D~~g----~~R~-----v~~~------------~~~~~rs-~~----rr~g~~---- 320 (506)
T PRK01544 278 TQIFLDHGYNIES------VY-KDLQG----HSRV-----ILIS------------PINLNRS-YA----RRIGKS---- 320 (506)
T ss_pred HHHHHhcCCCceE------EE-ecCCC----CceE-----EEec------------cccCCcc-ee----ccCCCC----
Confidence 5555555554321 11 12211 0010 0000 0011000 00 000000
Q ss_pred ccccccCCcccccCcccCcchhcchhhH-HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC----CeEE
Q 006662 427 PERLNAIPPRVNRGAVDGVTAEMFREDT-ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD----PLWV 501 (636)
Q Consensus 427 p~rl~~~p~~~~~~~~~~~~~~~f~~d~-~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~----~v~~ 501 (636)
..+.. ..|......|.--...+-. ..-..+||+|||.|.|.+.++.. +++.
T Consensus 321 -----------------------~~~~q~~~~e~~~p~~~i~~eklf~-~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iG 376 (506)
T PRK01544 321 -----------------------LSGVQQNLLDNELPKYLFSKEKLVN-EKRKVFLEIGFGMGEHFINQAKMNPDALFIG 376 (506)
T ss_pred -----------------------CCHHHHHHHHhhhhhhCCCHHHhCC-CCCceEEEECCCchHHHHHHHHhCCCCCEEE
Confidence 00000 0111111111000000112 45789999999999999999865 3444
Q ss_pred EEecCCCCCccchHHHHhhcccchhhccccc----cCCCC-Cccceeeecccccc-------CCCCcCHHHHHHHHhhcc
Q 006662 502 MNTVPVEAKINTLGVIYERGLIGTYQNWCEA----MSTYP-RTYDLIHADSIFSL-------YKDRCEMEDVLLEMDRIL 569 (636)
Q Consensus 502 mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~----~~~yp-~t~Dl~H~~~~fs~-------~~~~c~~~~~l~e~dRiL 569 (636)
+-+-..-.. ..+..+.++||-. +.-.|.. ..-+| .+.|-||. .|.. .+.|=--+..|-++-|+|
T Consensus 377 iE~~~~~~~-~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i--~FPDPWpKkrh~krRl~~~~fl~~~~~~L 452 (506)
T PRK01544 377 VEVYLNGVA-NVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI--LFPDPWIKNKQKKKRIFNKERLKILQDKL 452 (506)
T ss_pred EEeeHHHHH-HHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE--ECCCCCCCCCCccccccCHHHHHHHHHhc
Confidence 433332221 3345556667621 1122322 23356 88999887 5662 233333458999999999
Q ss_pred cCCcEEEE-EeCHHHHHHHHHHHhc
Q 006662 570 RPEGSVII-RDDVDILVKIKSITDG 593 (636)
Q Consensus 570 rPgG~~i~-~d~~~~~~~~~~~~~~ 593 (636)
+|||.+.+ ||..++...+.+.+..
T Consensus 453 k~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 453 KDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 99999888 5777776666555443
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=3.7e-12 Score=126.47 Aligned_cols=106 Identities=15% Similarity=0.265 Sum_probs=80.6
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRA 282 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~s 282 (636)
+.+.+...++ .+|||+|||+|.++.+|++++..++++ |+++.+++.++++ +. ++.+.+.|...++++ ++
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~gv---D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVTAW---DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CC
Confidence 3444443343 389999999999999999998777777 8899988877543 33 366677777666664 57
Q ss_pred eeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEE
Q 006662 283 FDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 283 FDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis 319 (636)
||+|+|+.+++++.. +...++.++.++|||||++++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999855443 2378999999999999997654
No 17
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.38 E-value=4.8e-12 Score=131.68 Aligned_cols=159 Identities=19% Similarity=0.303 Sum_probs=105.4
Q ss_pred CCCCCCCccceecCCCCCCCCCCCCCCccccccccCCCCchhhHHHHhcchhhccCCceecCCCCCCCcccHHHHHHHHH
Q 006662 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIG 209 (636)
Q Consensus 130 ~C~~~~~r~~clvp~P~~Y~~P~~wP~Srd~~wy~n~p~~~L~~~k~~q~w~~~~g~~~~F~ggg~~f~~g~~~~id~L~ 209 (636)
.|+.. +|+..+.+||..-++-...+.. +..+..... ++.+.++. .| +|..-.+...+.+.
T Consensus 20 ~C~~~----h~fd~a~~Gy~~ll~~~~~~~~----~~~d~~~~~-~ar~~fl~----------~g-~y~~l~~~i~~~l~ 79 (272)
T PRK11088 20 ICPQN----HQFDCAKEGYVNLLPVQHKRSK----DPGDNKEMM-QARRAFLD----------AG-HYQPLRDAVANLLA 79 (272)
T ss_pred EcCCC----CCCccccCceEEeccccccCCC----CCCcCHHHH-HHHHHHHH----------CC-ChHHHHHHHHHHHH
Confidence 78873 8999999999887652111111 011111111 11222221 11 12222233333344
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHHHhhcC-----CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~-----v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFD 284 (636)
+.++ ....+|||+|||+|.++..+++.. ..++++ |+++.+++.|.++..++.+.+++...+|+++++||
T Consensus 80 ~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~gi---D~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 80 ERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGL---DISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred HhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEE---CCCHHHHHHHHHhCCCCeEEEeecccCCCcCCcee
Confidence 4332 223479999999999999998752 244556 99999999999888788899999999999999999
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
+|++.... ..+.++.|+|||||+|++..|.
T Consensus 154 ~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 154 AIIRIYAP--------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEEEecCC--------CCHHHHHhhccCCCEEEEEeCC
Confidence 99986531 2468999999999999999773
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.38 E-value=1.6e-12 Score=135.64 Aligned_cols=116 Identities=23% Similarity=0.403 Sum_probs=85.1
Q ss_pred CcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEE
Q 006662 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV--PALIG 269 (636)
Q Consensus 197 f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~ 269 (636)
+.......++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ .+|++|.+.++++ +. .+.+.
T Consensus 43 Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl~~~v~v~ 117 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGLEDRVEVR 117 (273)
T ss_dssp HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTSSSTEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 4444455566777777788877 9999999999999999999 8888888 8899999988644 44 36777
Q ss_pred EeccccCCCCCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEe
Q 006662 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 270 ~~d~~~Lpf~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..|...++. +||.|++..+++|... +...+++++.++|||||.+++..
T Consensus 118 ~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 118 LQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 777666554 8999999999999863 34899999999999999999864
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=7.2e-12 Score=124.20 Aligned_cols=106 Identities=15% Similarity=0.252 Sum_probs=79.9
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH----cCCCeEEEEeccccCCCCCCCe
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e----rg~~~~~~~~d~~~Lpf~~~sF 283 (636)
+.+.+....+ .+|||+|||+|.++.++++++..++++ |+++.+++.+++ .+.++.+...+....+++ ++|
T Consensus 22 l~~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~~V~~i---D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 22 VREAVKTVAP--CKTLDLGCGQGRNSLYLSLAGYDVRAW---DHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHHHhccCCC--CcEEEeCCCCCHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCC
Confidence 3444443333 389999999999999999998777777 888888887643 355566666666555554 579
Q ss_pred eEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEE
Q 006662 284 DMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 284 DlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis 319 (636)
|+|+++.+++++.. +...+++++.|+|||||++++.
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999998866543 2378999999999999996665
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=5.4e-12 Score=129.72 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=88.9
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~s 282 (636)
.+.+.+.++..++. +|||||||+|.++..++++ +..++++ |+++.+++.|+++..++.+...|...+. ++++
T Consensus 20 ~~~ll~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~gv---D~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~ 93 (258)
T PRK01683 20 ARDLLARVPLENPR--YVVDLGCGPGNSTELLVERWPAARITGI---DSSPAMLAEARSRLPDCQFVEADIASWQ-PPQA 93 (258)
T ss_pred HHHHHhhCCCcCCC--EEEEEcccCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHhCCCCeEEECchhccC-CCCC
Confidence 33445555444444 9999999999999999986 4566666 8899999999888767788888876654 4568
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
||+|+++.++ ||..+...+++++.++|||||.+++..+
T Consensus 94 fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 94 LDLIFANASL-QWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred ccEEEEccCh-hhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 9999999998 6666889999999999999999999864
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=6.1e-12 Score=129.54 Aligned_cols=99 Identities=20% Similarity=0.118 Sum_probs=83.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCC-CCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP-YPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lp-f~~~sFDlV~~s~~ 291 (636)
..+|||+|||+|.++..|++++..++.+ |+++.+++.|+++ + ..+.+..++...++ +++++||+|++..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~v---D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILC---DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4589999999999999999998777777 9999999988754 2 24577777777664 66789999999999
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ +..++..++.++.++|||||++++...
T Consensus 122 l~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 122 LE-WVADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HH-hhCCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 94 456889999999999999999998754
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=1.5e-11 Score=137.45 Aligned_cols=111 Identities=23% Similarity=0.431 Sum_probs=90.6
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYP 279 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~ 279 (636)
.+.+.+.+...++ .+|||||||+|.++..|++. +..++++ |+++.+++.|+++. ..+.+...|...++++
T Consensus 255 te~l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gv---DiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 255 TKEFVDKLDLKPG--QKVLDVGCGIGGGDFYMAENFDVHVVGI---DLSVNMISFALERAIGRKCSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHHhcCCCCC--CEEEEEeccCCHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCC
Confidence 3445555554444 48999999999999999876 6666777 88999999887652 2467888888888888
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||+|+|..+++|+ .++..++.++.|+|||||.+++..+
T Consensus 330 ~~~fD~I~s~~~l~h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 330 DNSFDVIYSRDTILHI-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCCEEEEEECCccccc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8899999999999666 4889999999999999999999865
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.33 E-value=7e-12 Score=111.68 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=77.8
Q ss_pred cEEEEeCCCCcHHHHHHhh--cCCEEEEcCcCCchHHHHHHHHHcC------CCeEEEEecc-ccCCCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFALERG------VPALIGVMAS-IRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~--~~v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~-~~Lpf~~~sFDlV~~s~ 290 (636)
.+|||||||+|.++.++++ .+..++++ |+++.+++.++++. .++.+...|. ..... .+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGV---DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEE---ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 4899999999999999999 67887788 88999999887653 4688888888 33333 35699999988
Q ss_pred -cccccc--cChHHHHHHHHhcccCCcEEEEEe
Q 006662 291 -CLIPWG--QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 -~L~h~~--~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++.++. ++...+++++.+.|+|||+|++..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 443333 234789999999999999999975
No 24
>PRK05785 hypothetical protein; Provisional
Probab=99.32 E-value=1.3e-11 Score=125.38 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=75.7
Q ss_pred cEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 006662 220 RTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d 298 (636)
.+|||||||+|.++..+++. +..++++ |++++|++.|+++. .+.+++...+|+++++||+|+++.++++ .++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gv---D~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~-~~d 125 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVAL---DYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHA-SDN 125 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEE---CCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhc-cCC
Confidence 48999999999999999988 5666677 99999999998763 3467788899999999999999999954 568
Q ss_pred hHHHHHHHHhcccCC
Q 006662 299 DGLYLIEVDRVLRPG 313 (636)
Q Consensus 299 ~~~~L~el~RvLKPG 313 (636)
++.+++|+.|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 899999999999995
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=1e-11 Score=128.94 Aligned_cols=124 Identities=23% Similarity=0.351 Sum_probs=98.5
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc----CC
Q 006662 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GV 264 (636)
Q Consensus 190 F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er----g~ 264 (636)
|+.....+.+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ ++|++|.+.++++ |.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCC
Confidence 44444445556666778888888888888 9999999999999999998 7998888 9999999888753 54
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 265 P--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 265 ~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+ +.+...|...+ .+.||-|++..+++|+.... ..+++.+.++|+|||.+++..-
T Consensus 121 ~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 121 EDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred CcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 4 45544444333 34499999999999987544 8999999999999999999753
No 26
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=122.23 Aligned_cols=198 Identities=17% Similarity=0.219 Sum_probs=139.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
.++|.|+|||+|..+..|+++ +..+.+| |.|.+|++.|+++.+++.|..+|...+. ++..+|+++++.+| ||.
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi---DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvl-qWl 105 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGI---DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAVL-QWL 105 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeec---cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhhh-hhc
Confidence 458999999999999999998 5555666 9999999999999999999999887764 56789999999999 999
Q ss_pred cChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecccccEEEEeCCCCCc-c
Q 006662 297 QYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHV-H 375 (636)
Q Consensus 297 ~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~~~aIWqKp~~~~-~ 375 (636)
++-..+|..+...|.|||.|.+..|.. +.. .....+.+.++..-|.......-. -++|+... .
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN-~de-------------psH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~ 169 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDN-LDE-------------PSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAA 169 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCc-cCc-------------hhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHH
Confidence 999999999999999999999998722 111 123346667776666544322112 25555432 3
Q ss_pred cccccccCCCCCCccCCCcCCccccccccccccCccCchhhhhcCCccccCccccccCCcccccCcccCcchhcchhhHH
Q 006662 376 CIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTA 455 (636)
Q Consensus 376 c~~~r~~~~~~~~C~~~~~~~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~ 455 (636)
+|..+. +--|+-|.=...+|.+|..-- ...+++.|..+.+|=++|. .+
T Consensus 170 Yy~lLa----~~~~rvDiW~T~Y~h~l~~a~------aIvdWvkgTgLrP~L~~L~----------------------e~ 217 (257)
T COG4106 170 YYELLA----PLACRVDIWHTTYYHQLPGAD------AIVDWVKGTGLRPYLDRLD----------------------EE 217 (257)
T ss_pred HHHHhC----cccceeeeeeeeccccCCCcc------chhhheeccccceeccccC----------------------HH
Confidence 444432 335654443455566654432 1234666666777666663 34
Q ss_pred HHHHHHHHHHHhhh
Q 006662 456 LWKKRVTYYKSVDY 469 (636)
Q Consensus 456 ~w~~~v~~y~~~~~ 469 (636)
.|++-+..|..++.
T Consensus 218 ~~~~FL~~Y~~~l~ 231 (257)
T COG4106 218 ERQRFLDRYLALLA 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777888887764
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.31 E-value=6.2e-11 Score=118.70 Aligned_cols=114 Identities=29% Similarity=0.399 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~ 274 (636)
..+.+.+.+.+...++. +|||+|||+|.++..+++.. ..++++ |+++.+++.++++ ...+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~---d~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGI---DRSEAMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEE---eCCHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34555666666666555 99999999999999998763 355566 8888988888765 345778888888
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++++++||+|++..+++++ .++..+++++.++|||||++++..+
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 888888999999999999665 4889999999999999999999876
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.30 E-value=2.3e-11 Score=122.84 Aligned_cols=112 Identities=22% Similarity=0.309 Sum_probs=89.3
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEecccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~ 275 (636)
..+.+.+.+...++. +|||+|||+|.++..+++. +..++++ |+++.+++.++++. ..+.+...|...
T Consensus 33 ~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 33 WRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGL---DFSENMLSVGRQKVKDAGLHNVELVHGNAME 107 (231)
T ss_pred HHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCceEEEEechhc
Confidence 335566666655555 9999999999999999875 2456666 88889988876542 246778888888
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++++||+|++..++ ++.++...+++++.++|+|||++++..+
T Consensus 108 ~~~~~~~fD~V~~~~~l-~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGL-RNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCCccEEEEeccc-ccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 88888999999999888 5556888999999999999999998764
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.30 E-value=4.1e-11 Score=128.32 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLP 277 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lp 277 (636)
+...+.+.+.+.+. ....+|||||||+|.++..+++. +..++.+ |.++.+++.|+++. .++.+..+|...++
T Consensus 98 e~~r~~~l~~~~l~-~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgV---D~S~~mL~~A~~k~~~~~i~~i~gD~e~lp 173 (340)
T PLN02490 98 EDMRDDALEPADLS-DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTIL---DQSPHQLAKAKQKEPLKECKIIEGDAEDLP 173 (340)
T ss_pred HHHHHHHHhhcccC-CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHhhhccCCeEEeccHHhCC
Confidence 33444444444332 22348999999999999888775 3445555 88999999887653 35677888888899
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCC--Ccccccc--CCCCchhhhHHHHHHHHHHHHHh
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV--NWESHWK--GWNRTTEDLKSEQNGIETIARSL 353 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~--~w~~~~~--~W~~t~e~l~~~~~~ie~la~~l 353 (636)
+++++||+|+++.+++++. ++..+++++.|+|||||.+++.++.. .|..... .|. .....+++.++++..
T Consensus 174 ~~~~sFDvVIs~~~L~~~~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~-----~~~t~eEl~~lL~~a 247 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWP-DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWM-----LFPKEEEYIEWFTKA 247 (340)
T ss_pred CCCCceeEEEEcChhhhCC-CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhc-----cCCCHHHHHHHHHHC
Confidence 9999999999999996654 78899999999999999999876421 1211110 010 011235567788888
Q ss_pred ceEeec
Q 006662 354 CWKKLI 359 (636)
Q Consensus 354 ~Wk~v~ 359 (636)
+|+.+.
T Consensus 248 GF~~V~ 253 (340)
T PLN02490 248 GFKDVK 253 (340)
T ss_pred CCeEEE
Confidence 888765
No 30
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.28 E-value=3.7e-11 Score=120.60 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=83.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
..+|||+|||+|.++..+++.+ ..++.+ |+++.+++.++++.. ++.+...|...+++++++||+|+++.++ |+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~ 110 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIAL---DISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QW 110 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEE---eChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hh
Confidence 3589999999999999999874 333455 889999988876643 4677888888888888999999999998 56
Q ss_pred ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..++..++.++.++|+|||.+++..+
T Consensus 111 ~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 111 CDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 66889999999999999999999875
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.27 E-value=9.5e-11 Score=124.47 Aligned_cols=109 Identities=18% Similarity=0.131 Sum_probs=81.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHH---HHc---CCCeEEEEeccccCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFA---LER---GVPALIGVMASIRLPY 278 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A---~er---g~~~~~~~~d~~~Lpf 278 (636)
+.+...+....+ ++|||||||+|.++..++..+. .++++ |.++.++..+ ++. ...+.+..++...+|.
T Consensus 111 ~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~~v~Gi---DpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 111 DRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAKSLVGI---DPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence 344444443344 4999999999999999988865 46777 7777666543 221 2345667777777875
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. .+||+|+|+.+++|+ .++..+|++++|+|||||.|++...
T Consensus 186 ~-~~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 L-YAFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred C-CCcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4 489999999999776 5889999999999999999999753
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.26 E-value=5.7e-11 Score=126.82 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=84.4
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHH--Hc----CCCeEEEEeccccCC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFAL--ER----GVPALIGVMASIRLP 277 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~--er----g~~~~~~~~d~~~Lp 277 (636)
.+.+...++...+ ++|||||||+|.++..+++.+. .++++ |.++.++..++ ++ ..++.+..++...+|
T Consensus 111 ~~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~~V~Gi---D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 111 WDRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAKLVVGI---DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred HHHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 3445555543333 4999999999999999998864 46677 77776664322 11 235788888888898
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ +++||+|+|..+++|. .++..+++++.++|+|||.|++..
T Consensus 186 ~-~~~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred C-cCCcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 7889999999999665 588999999999999999999974
No 33
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.26 E-value=6.5e-12 Score=110.86 Aligned_cols=90 Identities=26% Similarity=0.391 Sum_probs=73.5
Q ss_pred EEEeCCCCcHHHHHHhhcC-----CEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEeccc-
Q 006662 222 AIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRC- 291 (636)
Q Consensus 222 VLDIGCGtG~~a~~La~~~-----v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~- 291 (636)
|||+|||+|..+..+++.. ..++++ |+++++++.++++. .++.+.+.|...+++.+++||+|+|+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gv---D~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGV---DISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEE---ES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEE---ECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999999873 566666 99999999998664 6889999999999988899999999655
Q ss_pred ccccccCh-HHHHHHHHhcccCCc
Q 006662 292 LIPWGQYD-GLYLIEVDRVLRPGG 314 (636)
Q Consensus 292 L~h~~~d~-~~~L~el~RvLKPGG 314 (636)
++|+.++. ..+++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 76655333 789999999999998
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.25 E-value=4.9e-11 Score=125.16 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=77.4
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e----rg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
+|||+|||+|.++.+|++++..++++ |+++.+++.+++ .+.++.+...|....++ +++||+|+++.++++..
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~av---D~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAV---DINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 79999999999999999998877777 889988887653 35567777777665555 67899999999886554
Q ss_pred c-ChHHHHHHHHhcccCCcEEEEEe
Q 006662 297 Q-YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 297 ~-d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. +...+++++.++|+|||++++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 23789999999999999977754
No 35
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=4.6e-11 Score=117.22 Aligned_cols=143 Identities=24% Similarity=0.330 Sum_probs=108.0
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFD 284 (636)
+.|++++ .+++ +|||+|||.|.+..+|.+ +++.+.++ +++++.+..+.++|+++.-..++..-..|++++||
T Consensus 5 ~~I~~~I--~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 5 QIIAEWI--EPGS--RVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred HHHHHHc--CCCC--EEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCcc
Confidence 3456655 4566 999999999999999988 48888888 99999999999999876655444432349999999
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCC-Ccccc---------------ccCCCCchhhhHHHHHHHHH
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV-NWESH---------------WKGWNRTTEDLKSEQNGIET 348 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~-~w~~~---------------~~~W~~t~e~l~~~~~~ie~ 348 (636)
.|+.+.+|.+. .+|+.+|.|+.|+ |...+++-|+. .|..+ ...|-+|+.-..-....+++
T Consensus 78 ~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~ 153 (193)
T PF07021_consen 78 YVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFED 153 (193)
T ss_pred EEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHH
Confidence 99999999665 4889999999766 66888887644 33211 12366666655556778899
Q ss_pred HHHHhceEeec
Q 006662 349 IARSLCWKKLI 359 (636)
Q Consensus 349 la~~l~Wk~v~ 359 (636)
+++..+++.+.
T Consensus 154 lc~~~~i~I~~ 164 (193)
T PF07021_consen 154 LCRELGIRIEE 164 (193)
T ss_pred HHHHCCCEEEE
Confidence 99988887654
No 36
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.23 E-value=4.9e-11 Score=112.99 Aligned_cols=97 Identities=25% Similarity=0.364 Sum_probs=82.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC--CCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP--YPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp--f~~~sFDlV~~s 289 (636)
.+|||+|||+|.++..|+++ +..++++ |+++.+++.|+++ +. ++.+.+.|...++ ++ +.||+|++.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 48999999999999999943 5667777 9999999998763 44 5899999998887 66 899999999
Q ss_pred ccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.++ ++..++..+++++.++|++||.+++..+
T Consensus 81 ~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GVL-HHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp STG-GGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cch-hhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 988 5555778999999999999999999966
No 37
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=9.1e-11 Score=120.50 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=78.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcC----C--CeEEEEeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG----V--PALIGVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||||||+|..+..+++. +..++++ |+++.|++.|+++. . .+.+...+...+|++ .+|+|+++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gv---D~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAI---DNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 48999999999999888762 4566677 89999999987652 2 577888888777765 49999999
Q ss_pred ccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++++.++. ..+++++.++|||||.|+++..
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9996654332 6899999999999999999863
No 38
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.20 E-value=1.1e-10 Score=117.89 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=84.7
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc--C------CEEEEcCcCCchHHHHHHHHHcC--------CCeEEEEeccccCCC
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR--N------ILAVSFAPRDTHEAQVQFALERG--------VPALIGVMASIRLPY 278 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~--~------v~vv~i~p~Dis~a~l~~A~erg--------~~~~~~~~d~~~Lpf 278 (636)
.++...++||++||||.++..+.+. . -.++-. |+++.|+..+++|. ..+.+..+|++.|||
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~---Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL---DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE---eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC
Confidence 3444569999999999999988875 1 233333 88889988877653 127788899999999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++||+....+.+..++ ++++.|+|++|+|||||+|.+...
T Consensus 174 dd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred CCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 999999999999997776 899999999999999999998765
No 39
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.19 E-value=1.2e-10 Score=118.58 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=78.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc------CCCeEEEEeccccCCCCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er------g~~~~~~~~d~~~Lpf~~~sFDlV~~s 289 (636)
.+|||+|||+|.++..++++ +..++++ |+++.+++.|+++ ..++.+..+|...++++ .+|+|+++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gv---D~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGI---DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 48999999999999998874 4556666 8899999888754 23467888888888765 48999999
Q ss_pred cccccccc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+++++.+ +...+++++.|+|+|||.|+++.+
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99966543 237899999999999999999965
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.19 E-value=1.8e-10 Score=115.34 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=79.2
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+|||||||+|.++..|++. +..++++ |+++.+++.|+++...+.+..++... |+++++||+|+++.+++|+.+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~gi---DiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGV---EINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 48999999999999999886 5566666 99999999998876667777778766 888999999999999988754
Q ss_pred Ch-HHHHHHHHhcccCCcEEEEEe
Q 006662 298 YD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 298 d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
+. ..+++++.|++ ++++++..
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 33 78999999998 56888765
No 41
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.18 E-value=1e-10 Score=119.32 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=119.2
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhc--cCC-CCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCe
Q 006662 190 FPGGGTMFPRGADAYIDDIGKLIN--LKD-GSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPA 266 (636)
Q Consensus 190 F~ggg~~f~~g~~~~id~L~~lL~--l~~-g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~ 266 (636)
+.|.|.||--+.+.+.+.+. .-. ..+ ....++||||+|.|..+..|+..--.+... +.|..|...-.++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~-~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aT---E~S~~Mr~rL~~kg~~- 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLR-ISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYAT---EASPPMRWRLSKKGFT- 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhh-hhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEee---cCCHHHHHHHHhCCCe-
Confidence 66788887666655443332 111 111 134589999999999999998874333333 7788998888888843
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe--CCCCcccccc-CCCCchhhhHHHH
Q 006662 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG--PPVNWESHWK-GWNRTTEDLKSEQ 343 (636)
Q Consensus 267 ~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~--p~~~w~~~~~-~W~~t~e~l~~~~ 343 (636)
+.+..++.-.+..||+|.|.++| .-..+|..+|+++++.|+|+|.++++. |-..|.+... .|+++.+.+...-
T Consensus 139 ---vl~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g 214 (265)
T PF05219_consen 139 ---VLDIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKG 214 (265)
T ss_pred ---EEehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCC
Confidence 33343444345689999999999 555689999999999999999999974 5444555433 3666666655444
Q ss_pred HHHHHHHHHhceEeecccccEEEEeCCCCCcccccccccCCCCCCccCCCcCCccc
Q 006662 344 NGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWY 399 (636)
Q Consensus 344 ~~ie~la~~l~Wk~v~~~~~~aIWqKp~~~~~c~~~r~~~~~~~~C~~~~~~~~wy 399 (636)
..+|+.+.++- +++.. ...+..-+ .+.|++|++|-..+.++
T Consensus 215 ~~~E~~v~~l~-~v~~p---------~GF~v~~~-----tr~PYLcEGD~~~~~Y~ 255 (265)
T PF05219_consen 215 ATFEEQVSSLV-NVFEP---------AGFEVERW-----TRLPYLCEGDLYQSYYV 255 (265)
T ss_pred CcHHHHHHHHH-HHHHh---------cCCEEEEE-----eccCccccCcccCceEE
Confidence 44555555553 22211 11111222 33599999776555443
No 42
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.18 E-value=2.1e-10 Score=113.40 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=79.5
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccccCCCCCCCe
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF----ALERGVPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~~Lpf~~~sF 283 (636)
+.+.++..++ .++||+|||.|+.+.+|+++|..++.+ |.++..++. |.++++++.....|.....++ +.|
T Consensus 22 v~~a~~~~~~--g~~LDlgcG~GRNalyLA~~G~~VtAv---D~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLLKP--GKALDLGCGEGRNALYLASQGFDVTAV---DISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS-S--SEEEEES-TTSHHHHHHHHTT-EEEEE---ESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhcCC--CcEEEcCCCCcHHHHHHHHCCCeEEEE---ECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCc
Confidence 4444443333 389999999999999999999988888 777766654 446688888888888777775 679
Q ss_pred eEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|++..++++...+. ..++..|...++|||++++..
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9999988886665444 689999999999999999864
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.17 E-value=2.3e-10 Score=115.05 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=78.3
Q ss_pred EEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+|||||||+|.++..+++. +..++++ |+++.+++.++++ +. .+.+...|....|++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gi---d~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGY---TISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 7999999999999999886 3556666 8899998888754 22 357777777666665 589999999999
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|. .+...+++++.++|||||++++..+
T Consensus 78 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHI-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhC-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 666 4788999999999999999999875
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.17 E-value=2.6e-10 Score=118.40 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=82.2
Q ss_pred cCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCCCCCCCeeE
Q 006662 214 LKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPSRAFDM 285 (636)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lpf~~~sFDl 285 (636)
+.++. +|||||||+|..+..+++. + ..++.+ |+++.+++.|+++ + .++.+...+...+++++++||+
T Consensus 75 ~~~g~--~VLDiG~G~G~~~~~~a~~~g~~~~v~gv---D~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGE--TVLDLGSGGGFDCFLAARRVGPTGKVIGV---DMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEE---CCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeE
Confidence 34555 9999999999888776654 2 345566 8899999988764 2 2567788888889998899999
Q ss_pred EEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+++.++ ++..+...+++++.|+|||||+|++++.
T Consensus 150 Vi~~~v~-~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 150 IISNCVI-NLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEEcCcc-cCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998888 5555778999999999999999999864
No 45
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.16 E-value=9.3e-11 Score=119.16 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=94.7
Q ss_pred hcchhhccCCceecCCCCCCCcccHHHHHHHHHHhhcc-CCC----CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCc
Q 006662 177 NQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDG----SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDT 251 (636)
Q Consensus 177 ~q~w~~~~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l-~~g----~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Di 251 (636)
...||+.+|-+-.++.-. ........+.+....+. .++ .+++|||+|||.|.++..|++.+..++++ |+
T Consensus 46 a~~wwd~~g~~~~Lh~mn---~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GI---D~ 119 (282)
T KOG1270|consen 46 AFTWWDEEGVRHPLHSMN---QTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGI---DA 119 (282)
T ss_pred cccccccccchhhhhhcc---chhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEee---cc
Confidence 457888877655443322 12223333444444322 233 14689999999999999999999988888 99
Q ss_pred hHHHHHHHHHcCC--C---------eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 252 HEAQVQFALERGV--P---------ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 252 s~a~l~~A~erg~--~---------~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++.+++.|++... | +.+...+.+.+ .+.||+|+|+.+++|.. ++..++..+.++|||||.+++++
T Consensus 120 s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV~-dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 120 SDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHVK-DPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred cHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHHh-CHHHHHHHHHHHhCCCCceEeee
Confidence 9999999986521 1 11222222222 34599999999998875 89999999999999999999996
Q ss_pred C
Q 006662 321 P 321 (636)
Q Consensus 321 p 321 (636)
-
T Consensus 196 i 196 (282)
T KOG1270|consen 196 I 196 (282)
T ss_pred h
Confidence 4
No 46
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.16 E-value=2.7e-10 Score=114.75 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=79.7
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH-HcC----------------CCeEEEEeccccCCCC-CC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL-ERG----------------VPALIGVMASIRLPYP-SR 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~-erg----------------~~~~~~~~d~~~Lpf~-~~ 281 (636)
.+|||+|||.|..+.+|+++|..++++ |+|+.+++.+. +.+ ..+.+.++|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gv---D~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGV---ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEE---eCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 389999999999999999999988888 99999988753 222 3467778888777643 45
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
.||.|+...+++|+.++. ..++..+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 799999988888886555 679999999999999866654
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.14 E-value=3.4e-10 Score=123.57 Aligned_cols=112 Identities=26% Similarity=0.377 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lpf 278 (636)
...++.+.+.+.+.++. +|||||||+|.++..++++ +..++++ |+++++++.|+++. ..+.+...|...+
T Consensus 153 ~~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~gi---DlS~~~l~~A~~~~~~l~v~~~~~D~~~l-- 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGV---TISAEQQKLAQERCAGLPVEIRLQDYRDL-- 225 (383)
T ss_pred HHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHhccCeEEEEECchhhc--
Confidence 33445566666666665 9999999999999999986 6777777 99999999998764 3455555555443
Q ss_pred CCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||+|++..+++|... +...+++++.++|||||++++...
T Consensus 226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 478999999998877643 337899999999999999999854
No 48
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.13 E-value=1.9e-09 Score=108.39 Aligned_cols=111 Identities=22% Similarity=0.231 Sum_probs=86.3
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHcC------CCeEEEEecccc
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG------VPALIGVMASIR 275 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~~~ 275 (636)
...+...+...++ .+|||+|||+|.++..+++.. ..++.+ |+++.+++.++++. .++.+...+...
T Consensus 40 ~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 114 (239)
T PRK00216 40 RRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGKTGEVVGL---DFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA 114 (239)
T ss_pred HHHHHHHhCCCCC--CeEEEeCCCCCHHHHHHHHHcCCCCeEEEE---eCCHHHHHHHHHhhcccccccCeEEEeccccc
Confidence 3344444444433 489999999999999998874 555566 88888888887652 346777788878
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++.++||+|+++.+++++ .++..++.++.++|+|||.+++...
T Consensus 115 ~~~~~~~~D~I~~~~~l~~~-~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 115 LPFPDNSFDAVTIAFGLRNV-PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCCCccEEEEecccccC-CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 88777899999999988554 5788999999999999999998753
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.12 E-value=1.3e-09 Score=107.70 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=86.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
+.+|||+|||+|..+..++.+ +..++++ |.++.+++.|+++ +. ++.+...+...++. .++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~gi---D~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLV---DSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEE---eCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 348999999999999988864 4566666 8888888777543 33 47888888877776 67999999864
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
+ .+...++.++.++|||||++++..+.. ....++++++.++|....
T Consensus 121 ~----~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 121 V----ASLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred c----cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEee
Confidence 2 355789999999999999999986521 123467788888997543
No 50
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.09 E-value=5.8e-10 Score=112.11 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=101.8
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----C--CeEEEEecc
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----V--PALIGVMAS 273 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~ 273 (636)
+.+...+.+.+.++.......+|||+|||+|.++..+++.+..++++ |+++.+++.|+++. . ++.+.+.+.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gv---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAV---DISEQMVQMARNRAQGRDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34455556666665212234599999999999999999987777677 89999998887652 1 567777777
Q ss_pred ccCCCCCCCeeEEEeccccccccc-ChHHHHHHHHhcccCCcEEEEEeCCCCccccc----cCCCC---chhhhHHHHHH
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGPPVNWESHW----KGWNR---TTEDLKSEQNG 345 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~----~~W~~---t~e~l~~~~~~ 345 (636)
..++ ++||+|++..+++|+.. +...++.++.+++++++++.+... ..+.... ..|.. .........++
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK-TAWLAFLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC-chHHHHHHHHHhhCcCcccccceEEecHHH
Confidence 6665 78999999998877753 337889999999997776665422 1111000 00111 01111123456
Q ss_pred HHHHHHHhceEeecc
Q 006662 346 IETIARSLCWKKLIQ 360 (636)
Q Consensus 346 ie~la~~l~Wk~v~~ 360 (636)
++++++..+|+.+..
T Consensus 190 ~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 190 LERALGELGWKIVRE 204 (219)
T ss_pred HHHHHHHcCceeeee
Confidence 888888888887654
No 51
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.08 E-value=1.4e-09 Score=114.32 Aligned_cols=120 Identities=19% Similarity=0.191 Sum_probs=80.1
Q ss_pred CCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCC--
Q 006662 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVP-- 265 (636)
Q Consensus 193 gg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~-- 265 (636)
.+..|..|.+.......+++........+|||+|||+|.++..+++.+. .++++ |+++.+++.|+++ +..
T Consensus 134 pg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~av---Did~~al~~a~~n~~~n~~~~~ 210 (288)
T TIGR00406 134 PGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGI---DIDPLAVESARKNAELNQVSDR 210 (288)
T ss_pred CCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEE---ECCHHHHHHHHHHHHHcCCCcc
Confidence 3444555555555544444432222235999999999999999888754 45555 8888888888754 222
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+...+ ..+...++||+|+++... + ....++.++.++|||||++++++.
T Consensus 211 ~~~~~~~--~~~~~~~~fDlVvan~~~-~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 211 LQVKLIY--LEQPIEGKADVIVANILA-E---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred eEEEecc--cccccCCCceEEEEecCH-H---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2222222 233456789999997643 1 225789999999999999999975
No 52
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.08 E-value=1.1e-09 Score=110.72 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=95.2
Q ss_pred hHHHHhcchhhccCCceecCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCc
Q 006662 172 TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDT 251 (636)
Q Consensus 172 ~~~k~~q~w~~~~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Di 251 (636)
..++..+.||+..++.-.+ ..-....++.+...+...+ ..+|||||||+|.++..+++.+..++.+ |+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~i---D~ 78 (233)
T PRK05134 11 KFSALAARWWDPNGEFKPL-------HRINPLRLNYIREHAGGLF--GKRVLDVGCGGGILSESMARLGADVTGI---DA 78 (233)
T ss_pred HHHHHHHHHhccCCCcHHH-------HHhhHHHHHHHHHhccCCC--CCeEEEeCCCCCHHHHHHHHcCCeEEEE---cC
Confidence 3445566677665432222 1112223344444443233 3489999999999999999887766666 88
Q ss_pred hHHHHHHHHHc----CCCeEEEEeccccCC-CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 252 HEAQVQFALER----GVPALIGVMASIRLP-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 252 s~a~l~~A~er----g~~~~~~~~d~~~Lp-f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
++.+++.+.++ +..+.+...+....+ ..++.||+|+++.++.+. .++..++.++.++|+|||.++++.+.
T Consensus 79 s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 79 SEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV-PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc-CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 88888877654 344566666655554 345789999999988555 47889999999999999999998653
No 53
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.07 E-value=3.5e-09 Score=102.77 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=81.9
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE--EEEcCcCCchHHHHHHHHHc----CCC-eEEEEe
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL--AVSFAPRDTHEAQVQFALER----GVP-ALIGVM 271 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~--vv~i~p~Dis~a~l~~A~er----g~~-~~~~~~ 271 (636)
.+.+.-...|.+.+...... +|||+|||+|.++..++++... ++.+ |+++.+++.++++ +.. +.+...
T Consensus 14 ~~~d~~t~lL~~~l~~~~~~--~vLDlG~G~G~i~~~la~~~~~~~v~~v---Di~~~a~~~a~~n~~~n~~~~v~~~~~ 88 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKHKGG--RVLDLGCGSGVISLALAKRGPDAKVTAV---DINPDALELAKRNAERNGLENVEVVQS 88 (170)
T ss_dssp TSHHHHHHHHHHHHHHHTTC--EEEEETSTTSHHHHHHHHTSTCEEEEEE---ESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred CCCCHHHHHHHHHHhhccCC--eEEEecCChHHHHHHHHHhCCCCEEEEE---cCCHHHHHHHHHHHHhcCccccccccc
Confidence 44555556677776654444 8999999999999999998443 4455 8899998888643 444 666666
Q ss_pred ccccCCCCCCCeeEEEecccccccccC----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 272 ASIRLPYPSRAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 272 d~~~Lpf~~~sFDlV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~p 321 (636)
|... +.++++||+|+|+.-++.-..+ ...++.+..+.|+|||.|++...
T Consensus 89 d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 89 DLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp STTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 6533 3447899999999866322221 26789999999999999988754
No 54
>PRK06922 hypothetical protein; Provisional
Probab=99.07 E-value=6.3e-10 Score=126.55 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=80.5
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC--CCCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP--YPSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp--f~~~sFDlV~~s~~ 291 (636)
.+|||||||+|.++..+++. +..++++ |+++.+++.|+++ +.++.+..+|...+| +++++||+|+++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGI---DIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGI---DISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 38999999999999888875 4566666 9999999888754 345667778887787 78899999999988
Q ss_pred ccccc------------cChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWG------------QYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~------------~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++++. .+...+++++.|+|||||.+++...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 86553 2347899999999999999999854
No 55
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=5.7e-10 Score=109.74 Aligned_cols=97 Identities=23% Similarity=0.290 Sum_probs=78.8
Q ss_pred EEEEeCCCCcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHHc-----CCCeE-EEEeccccCC-CCCCCeeEEEecccc
Q 006662 221 TAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALER-----GVPAL-IGVMASIRLP-YPSRAFDMAHCSRCL 292 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~er-----g~~~~-~~~~d~~~Lp-f~~~sFDlV~~s~~L 292 (636)
.||+||||||..-.++-. .+..++.+ |.++.|-+++.++ ...+. |.+++.+.+| ++++++|+|+|..+|
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~l---Dpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCL---DPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEe---CCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 589999999987666653 36666677 7788887776432 33454 8889999999 899999999999999
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ..++.+.|+++.|+|||||.+++..+
T Consensus 156 CS-ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 156 CS-VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred ec-cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 55 45999999999999999999999865
No 56
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.07 E-value=1.8e-09 Score=107.37 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=87.2
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC---EEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLP 277 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v---~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lp 277 (636)
+.+.+.+.+...++ .+|||+|||+|.++..+++... .++.+ |+++.+++.++++. ..+.+...+...++
T Consensus 27 ~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~~~~~~~~~~~~~~i---D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 27 WRRRAVKLIGVFKG--QKVLDVACGTGDLAIELAKSAPDRGKVTGV---DFSSEMLEVAKKKSELPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHHHhccCCC--CeEEEeCCCCChhHHHHHHhcCCCceEEEE---ECCHHHHHHHHHHhccCCCceEEecchhcCC
Confidence 33444555443333 4999999999999999988743 45555 88888888887654 24677788888888
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++||+|+++.++++ ..++..+++++.++|+|||++++...
T Consensus 102 ~~~~~~D~i~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRN-VTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCC-cccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88889999999988844 45789999999999999999998754
No 57
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.06 E-value=9.6e-10 Score=108.29 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=76.5
Q ss_pred cCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 214 LKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
+..+..+++||+|||.|.++..|+.+.-..+.+ |+++.+++.|++|. .++.+.+.+.... .|.+.||+|+++.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~Llav---Dis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE 114 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAV---DISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE 114 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEE---ES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEE---eCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh
Confidence 345556699999999999999999995444455 88999999999874 3588888776543 5789999999999
Q ss_pred ccccccc--ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQ--YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~--d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++.+.+ +...++..+...|+|||.|++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9966643 226789999999999999999864
No 58
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.06 E-value=2.1e-09 Score=114.30 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhccC-CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----------CCeEEEE
Q 006662 202 DAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----------VPALIGV 270 (636)
Q Consensus 202 ~~~id~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----------~~~~~~~ 270 (636)
...++.+.+++... ...+.+|||||||+|.++..+++++..++++ |+++.+++.++++. ..+.+..
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gv---D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSAS---DISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 34455666666432 1123489999999999999999998777777 99999999887653 1345555
Q ss_pred eccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccc--------cccCCCCchhhhHH
Q 006662 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWES--------HWKGWNRTTEDLKS 341 (636)
Q Consensus 271 ~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~--------~~~~W~~t~e~l~~ 341 (636)
.|...+ +++||+|+|..+++|+..+. ..+++.+.+ +.+||. +++..+..+.. .+.+.......+..
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~ 278 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLH 278 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeC
Confidence 554332 57899999999998876543 345666665 455555 44433332211 00010000011112
Q ss_pred HHHHHHHHHHHhceEeec
Q 006662 342 EQNGIETIARSLCWKKLI 359 (636)
Q Consensus 342 ~~~~ie~la~~l~Wk~v~ 359 (636)
..++++++++..+|+...
T Consensus 279 s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 279 AEADVERALKKAGWKVAR 296 (315)
T ss_pred CHHHHHHHHHHCCCEEEE
Confidence 346678888888887653
No 59
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.06 E-value=7.7e-10 Score=114.99 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=77.9
Q ss_pred CCcEEEEeCCCCcH----HHHHHhhcCC----EEEEcCcCCchHHHHHHHHHcC--------------------------
Q 006662 218 SIRTAIDTGCGVAS----WGAYLMSRNI----LAVSFAPRDTHEAQVQFALERG-------------------------- 263 (636)
Q Consensus 218 ~~r~VLDIGCGtG~----~a~~La~~~v----~vv~i~p~Dis~a~l~~A~erg-------------------------- 263 (636)
...+|+|+|||+|. ++..+++... ....+.+.|+++.+++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 4555555311 1123444499999999997531
Q ss_pred ------CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 264 ------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 264 ------~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
..+.|.+.|....+++.++||+|+|..+++++.+.. ..+++++.++|+|||+|++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 136777888888877788999999999997775322 6899999999999999999743
No 60
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.05 E-value=8.7e-11 Score=102.95 Aligned_cols=90 Identities=26% Similarity=0.347 Sum_probs=52.6
Q ss_pred EEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCC-C-CCCCeeEEEeccccc
Q 006662 223 IDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP-Y-PSRAFDMAHCSRCLI 293 (636)
Q Consensus 223 LDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lp-f-~~~sFDlV~~s~~L~ 293 (636)
||||||+|.++..++++ ...++.+ |+|+.+++.++++ . .............. . ..++||+|+++.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGV---DISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEE---ESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999988 4444444 7777777555433 1 22233333332222 1 235999999999996
Q ss_pred ccccChHHHHHHHHhcccCCcEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYW 316 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~L 316 (636)
|+ ++...+++++.++|||||.|
T Consensus 78 ~l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred hh-hhHHHHHHHHHHHcCCCCCC
Confidence 66 78899999999999999986
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.04 E-value=1.3e-09 Score=113.77 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=85.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC-C--CeEEEEeccccCCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG-V--PALIGVMASIRLPYPSR 281 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg-~--~~~~~~~d~~~Lpf~~~ 281 (636)
+.+...++.-. +++|||||||.|.++..|+.+|. .+++++|....-.+.+++++-- . .+...-..++.+|. .+
T Consensus 105 ~rl~p~l~~L~--gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 105 DRLLPHLPDLK--GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred HHHHhhhCCcC--CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 45555554223 45999999999999999999976 5889988776666666654332 2 23333356778887 78
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.||+|+|..+|.|.. +|-..|.++...|+|||.+++.+
T Consensus 182 ~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEE
Confidence 999999999997765 99999999999999999999864
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=3.5e-09 Score=107.10 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=77.6
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH-HcCC----------------CeEEEEeccccCCCC-CC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL-ERGV----------------PALIGVMASIRLPYP-SR 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~-erg~----------------~~~~~~~d~~~Lpf~-~~ 281 (636)
.+|||+|||.|..+.+|+++|..++++ |+++.+++.+. +++. .+.+.++|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~av---D~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGV---ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEE---ccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 389999999999999999999988888 99999988753 3332 356677787776533 35
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEE
Q 006662 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Lii 318 (636)
.||+|+...+++|+.++. ..++..+.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 899999988887876555 7899999999999997554
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.03 E-value=1.5e-09 Score=111.71 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=76.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
+.+|||+|||+|.++..+++.+.. ++++ |+++.+++.|+++.....+ .+...++..+.+||+|+++... +
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~gi---Dis~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~-~--- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAV---DIDPQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILA-N--- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEE---ECCHHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcH-H---
Confidence 349999999999999988887653 5555 8899999888765210000 0001112222379999997533 1
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 298 YDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 298 d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
....++.++.++|||||++++++... ...+.+.+.++..+|+.+.
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~-----------------~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILE-----------------EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcH-----------------hhHHHHHHHHHHCCCEEEE
Confidence 12578899999999999999996511 1123456667777887654
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.03 E-value=1.9e-09 Score=107.56 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=77.0
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEecc-ccCC--CCCCCeeEEEe
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMAS-IRLP--YPSRAFDMAHC 288 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~-~~Lp--f~~~sFDlV~~ 288 (636)
..+|||+|||+|.++..+++. +..++++ |+++.+++.++++ + .++.+.+.+. ..++ +++++||+|++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gV---D~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGI---EVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEE---EechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 348999999999999999876 3345555 8888888887643 3 3578888887 6666 77889999999
Q ss_pred cccccccccC--------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 289 SRCLIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 289 s~~L~h~~~d--------~~~~L~el~RvLKPGG~Liis~p 321 (636)
+... +|... ...+++++.++|||||+|+++.+
T Consensus 118 ~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 118 NFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 7654 44321 36789999999999999999854
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.00 E-value=6.4e-09 Score=93.71 Aligned_cols=108 Identities=18% Similarity=0.079 Sum_probs=76.9
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEecccc-
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIR- 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~- 275 (636)
....+.+.+....+. +|||+|||+|.++..++++ +..++++ |+++.+++.++++ + .++.+...+...
T Consensus 7 ~~~~~~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 7 VRALTLSKLRLRPGD--VLWDIGAGSGSITIEAARLVPNGRVYAI---ERNPEALRLIERNARRFGVSNIVIVEGDAPEA 81 (124)
T ss_pred HHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCceEEEE---cCCHHHHHHHHHHHHHhCCCceEEEecccccc
Confidence 334455555544444 8999999999999999987 3455566 8888888877543 2 245666555443
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++...++||.|++..... ....+++++.++|+|||+|++..
T Consensus 82 ~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ChhhcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 333346899999976542 23589999999999999999874
No 66
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.00 E-value=2.2e-10 Score=97.94 Aligned_cols=92 Identities=23% Similarity=0.329 Sum_probs=68.2
Q ss_pred eeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccC--CCC-CccceeeeccccccCCCCcC
Q 006662 481 LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--TYP-RTYDLIHADSIFSLYKDRCE 557 (636)
Q Consensus 481 lD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~--~yp-~t~Dl~H~~~~fs~~~~~c~ 557 (636)
||+|||.|-++..|.+++. .+|+.+|.++.+++.+.++.--.-..-.+..+. ++| ++||+|++.++|... -+
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 8999999999999999833 466677777788888888776332111122222 344 999999999999876 56
Q ss_pred HHHHHHHHhhcccCCcEEEE
Q 006662 558 MEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 558 ~~~~l~e~dRiLrPgG~~i~ 577 (636)
...+|.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 78999999999999999986
No 67
>PRK06202 hypothetical protein; Provisional
Probab=99.00 E-value=4.1e-09 Score=106.94 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=73.8
Q ss_pred CcEEEEeCCCCcHHHHHHhhc----C--CEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR----N--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~--v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
..+|||||||+|.++..|++. + ..++++ |+++.+++.|+++. .++.+...+...++.++++||+|+|+.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAI---DPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEE---cCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 358999999999998888752 3 355666 99999999998763 245566666667777788999999999
Q ss_pred cccccccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 291 CLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 291 ~L~h~~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
+++|+.++. ..+++++.|+++ |.+++.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 997775332 579999999998 455554
No 68
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.00 E-value=3.1e-09 Score=105.57 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEec-cccCCCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMA-SIRLPYPS 280 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d-~~~Lpf~~ 280 (636)
.+..+.-.+++.+..+...-|||||||+|.-+..|.+.+...+++ |+|+.|++.|.++-....+...| .+-+||.+
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGv---DiSpsML~~a~~~e~egdlil~DMG~Glpfrp 110 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGV---DISPSMLEQAVERELEGDLILCDMGEGLPFRP 110 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEee---cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCC
Confidence 445566667777776666799999999999999999998877788 99999999998765543343344 36799999
Q ss_pred CCeeEEEecccccccccC-------h----HHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQY-------D----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~d-------~----~~~L~el~RvLKPGG~Liis~p 321 (636)
++||.|++..++ +|.-+ | ..++..++.+|++|+..++.-.
T Consensus 111 GtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 111 GTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 999999998877 66422 2 2467889999999999999865
No 69
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.98 E-value=2.4e-09 Score=112.69 Aligned_cols=121 Identities=22% Similarity=0.231 Sum_probs=80.6
Q ss_pred CCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHH----HcCCCe
Q 006662 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFAL----ERGVPA 266 (636)
Q Consensus 192 ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~----erg~~~ 266 (636)
..|..|..|.++......+++......+.+|||+|||+|.++...++.|. .++++ |+++.+++.|+ .+++..
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~---DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAI---DIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEE---ESSCHHHHHHHHHHHHTT-TT
T ss_pred CCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEe---cCCHHHHHHHHHHHHHcCCCe
Confidence 34556788888887777777764333345999999999999999988865 34444 55656666554 345544
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 267 ~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+.+.. ......+.||+|+++-..... ..++..+.++|+|||+|++|+-
T Consensus 212 ~~~v~~--~~~~~~~~~dlvvANI~~~vL----~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 212 RIEVSL--SEDLVEGKFDLVVANILADVL----LELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp CEEESC--TSCTCCS-EEEEEEES-HHHH----HHHHHHCHHHEEEEEEEEEEEE
T ss_pred eEEEEE--ecccccccCCEEEECCCHHHH----HHHHHHHHHhhCCCCEEEEccc
Confidence 443322 223445899999997644111 5788889999999999999975
No 70
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.98 E-value=7.7e-09 Score=111.34 Aligned_cols=120 Identities=17% Similarity=0.118 Sum_probs=83.6
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHH----cCCCeEE
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE----RGVPALI 268 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~e----rg~~~~~ 268 (636)
.++....+.-.+.+.+.++.... .+|||+|||+|.++..++++. ..++.+ |+++.+++.+++ ++....+
T Consensus 175 vFs~~~lD~gt~lLl~~l~~~~~--g~VLDlGCG~G~ls~~la~~~p~~~v~~v---Dis~~Al~~A~~nl~~n~l~~~~ 249 (342)
T PRK09489 175 VFSRDGLDVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSAVLARHSPKIRLTLS---DVSAAALESSRATLAANGLEGEV 249 (342)
T ss_pred CCCCCCCCHHHHHHHHhccccCC--CeEEEeccCcCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCEE
Confidence 33344445555566666653332 379999999999999999873 355555 888888887764 3444555
Q ss_pred EEeccccCCCCCCCeeEEEeccccccccc----ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQ----YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 269 ~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...|... ...+.||+|+|+..++.... ....++.++.+.|||||.|+++..
T Consensus 250 ~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 250 FASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EEccccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 5555432 23578999999988743221 226899999999999999999865
No 71
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.97 E-value=2.7e-09 Score=107.23 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=71.8
Q ss_pred HHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-----
Q 006662 207 DIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----- 277 (636)
Q Consensus 207 ~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp----- 277 (636)
++.+.+. +.++. +|||||||+|.++..++++. ..++++ |+++ + ....++.+.++|....+
T Consensus 41 ~~~~~~~~~~~~~--~VLDlG~GtG~~t~~l~~~~~~~~~V~aV---Di~~-~-----~~~~~v~~i~~D~~~~~~~~~i 109 (209)
T PRK11188 41 EIQQSDKLFKPGM--TVVDLGAAPGGWSQYAVTQIGDKGRVIAC---DILP-M-----DPIVGVDFLQGDFRDELVLKAL 109 (209)
T ss_pred HHHHHhccCCCCC--EEEEEcccCCHHHHHHHHHcCCCceEEEE---eccc-c-----cCCCCcEEEecCCCChHHHHHH
Confidence 3333343 34444 89999999999999998872 345555 5544 1 11234677888877643
Q ss_pred ---CCCCCeeEEEecccccccccCh-----------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ---YPSRAFDMAHCSRCLIPWGQYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ---f~~~sFDlV~~s~~L~h~~~d~-----------~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+++||+|+|+.+. ++..++ ..+|.++.++|||||.|++...
T Consensus 110 ~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 110 LERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 567899999998766 443332 3588999999999999999754
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=6e-09 Score=104.17 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=77.4
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~ 274 (636)
....+.+.+...++. +|||||||+|..+..+++. +..++++ |+++++++.|+++ +. .+.+..+|..
T Consensus 60 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~i---D~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTV---EIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 445566666555555 8999999999999888875 2456666 8888888877653 33 3677777776
Q ss_pred cCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.......+||+|++..++.+.. .++.++|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 5544567899999988774433 57889999999998864
No 73
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=4.2e-09 Score=110.41 Aligned_cols=120 Identities=24% Similarity=0.280 Sum_probs=80.8
Q ss_pred CCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHc----CCCeEE
Q 006662 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALER----GVPALI 268 (636)
Q Consensus 194 g~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~er----g~~~~~ 268 (636)
|-.|..|.+.......+++.....++++|||+|||+|.++...++.|.. ++++ |+.+-+++.|+++ +++...
T Consensus 138 GlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~---DiDp~AV~aa~eNa~~N~v~~~~ 214 (300)
T COG2264 138 GLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGV---DIDPQAVEAARENARLNGVELLV 214 (300)
T ss_pred ccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEe---cCCHHHHHHHHHHHHHcCCchhh
Confidence 3345555555555555555433334569999999999999999999754 5555 7777777777643 444211
Q ss_pred EEeccccCCCCC-CCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 269 GVMASIRLPYPS-RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 269 ~~~d~~~Lpf~~-~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.......+..+. +.||+|++|-.- ++ ..+..++.+.|||||++++|+-
T Consensus 215 ~~~~~~~~~~~~~~~~DvIVANILA-----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 215 QAKGFLLLEVPENGPFDVIVANILA-----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred hcccccchhhcccCcccEEEehhhH-----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 111112222333 589999997632 33 6889999999999999999974
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.95 E-value=7.1e-09 Score=101.04 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=74.2
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
+|||+|||+|.++..+++.+..++++ |+++.+++.++++ +..+.+...|....+ .++||+|+++..+++..
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGKCILTT---DINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 89999999999999999987666666 8899998887654 345666666654433 45899999987775443
Q ss_pred cC--------------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 297 QY--------------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d--------------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ...++.++.++|+|||.+++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 21 14679999999999999999864
No 75
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.93 E-value=1.3e-08 Score=100.54 Aligned_cols=130 Identities=23% Similarity=0.254 Sum_probs=86.3
Q ss_pred EEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-C-CCCCCCeeEEEeccccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-L-PYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-L-pf~~~sFDlV~~s~~L~h~~~ 297 (636)
+|||||||+|.++..+++. +..++++ |+++++++.+.+++. .+...+... + ++++++||+|+++.+++|. .
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~-~ 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGI---EIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQAT-R 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEE---eCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcC-c
Confidence 8999999999999999765 4445566 889999988877654 455556544 4 4778899999999999554 5
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeCCCC-cc-------c------c--ccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 298 YDGLYLIEVDRVLRPGGYWILSGPPVN-WE-------S------H--WKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 298 d~~~~L~el~RvLKPGG~Liis~p~~~-w~-------~------~--~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
++..+++++.|++++ .+++.|... |. . . ...|...........+++.++++..+++.+.
T Consensus 90 d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 90 NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 888999999887654 444433211 10 0 0 0012121111123456677888888887654
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.93 E-value=2.1e-08 Score=100.58 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=79.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCC-CCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYP-SRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~-~~sFDlV~~s~~L 292 (636)
..+|||+|||+|.++..+++.+..++.+ |+++.+++.++++ +. ++.+...+....+.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~i---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGI---DASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999999998887666666 8888888777653 33 466777776666544 3789999999988
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++. .++..++.++.++|+|||.++++.+
T Consensus 123 ~~~-~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHV-PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhC-CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 554 5889999999999999999999865
No 77
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.93 E-value=3e-08 Score=97.32 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=78.1
Q ss_pred cccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEE
Q 006662 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GV-PALIGV 270 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~ 270 (636)
+-..+.....+.+.+...++. +|||+|||+|.++..++++. ..++.+ |+++.+++.++++ +. .+.+..
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~v---D~s~~~~~~a~~n~~~~~~~~i~~~~ 87 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAK--HLIDVGAGTGSVSIEAALQFPSLQVTAI---ERNPDALRLIKENRQRFGCGNIDIIP 87 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCC--EEEEECCcCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHhCCCCeEEEe
Confidence 333444444555666555544 89999999999999998863 455566 8888888877643 22 355655
Q ss_pred eccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 271 ~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.+.. .++ .++||+|++..... ....++.++.++|+|||++++..
T Consensus 88 ~d~~-~~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 88 GEAP-IEL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCch-hhc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 5542 233 35799999876542 33678999999999999999874
No 78
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.92 E-value=2.1e-08 Score=98.60 Aligned_cols=92 Identities=21% Similarity=0.258 Sum_probs=70.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
.+|||+|||+|.++..++.. +..++++ |.++.+++.+++ .+. ++.+..++...++ ..++||+|++.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~i---D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLL---ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEE---eCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h
Confidence 48999999999999988765 3455666 788877766543 343 4788888887764 357899999865 3
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.+...+++.+.++|+|||.+++..
T Consensus 119 ----~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ----ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 244678899999999999999874
No 79
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.91 E-value=1.6e-08 Score=107.04 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=79.8
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
.+.+.+.+...++. +|||||||+|.++..++++ +..++.+ |. +.+++.++++ +. .+.+..+|....
T Consensus 138 ~~~l~~~~~~~~~~--~vlDiG~G~G~~~~~~~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 138 IQLLLEEAKLDGVK--KMIDVGGGIGDISAAMLKHFPELDSTIL---NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 211 (306)
T ss_pred HHHHHHHcCCCCCC--EEEEeCCchhHHHHHHHHHCCCCEEEEE---ec-HHHHHHHHHHHHhCCccceEEEEecCccCC
Confidence 34455555444444 9999999999999999988 3555555 55 4566665432 33 367777887666
Q ss_pred CCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+++. +|+|++++++++|.++. ..+++++.++|||||++++...
T Consensus 212 ~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 212 SYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6653 69999999997776443 6799999999999999999864
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.90 E-value=1.2e-08 Score=101.03 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=74.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCC---CCCCCeeEEEec
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLP---YPSRAFDMAHCS 289 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lp---f~~~sFDlV~~s 289 (636)
.++||||||+|.++..++++ ...++++ |+++.+++.|.++ + .++.+..+|...++ +++++||.|+++
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gv---D~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGI---EIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEE---EeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 38999999999999999987 3445555 7788888777543 2 25788888876654 556799999987
Q ss_pred ccccccccCh--------HHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~--------~~~L~el~RvLKPGG~Liis~p 321 (636)
... +|.... ..++.++.|+|||||.|++...
T Consensus 95 ~pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 95 FPD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 654 554322 4689999999999999999854
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.90 E-value=1.2e-08 Score=110.87 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=82.2
Q ss_pred cccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC----CeE
Q 006662 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV----PAL 267 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~----~~~ 267 (636)
..+.|.-.+.+.+.++...+ .+|||+|||+|.++..++++ ...++.+ |+++.+++.|+++ +. .+.
T Consensus 210 ~~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~v---D~S~~Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 210 RTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFV---DESPMAVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred CCCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCcccCceEE
Confidence 34455555567777764433 38999999999999999987 3455556 8899999888754 22 345
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccc--cC--hHHHHHHHHhcccCCcEEEEEe
Q 006662 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWG--QY--DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 268 ~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~--~d--~~~~L~el~RvLKPGG~Liis~ 320 (636)
+...|... .++..+||+|+|+..++... .+ ...++.++.++|+|||.|+++.
T Consensus 285 ~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 285 FMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 55544422 23456899999987773221 11 1578999999999999999995
No 82
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=5.8e-09 Score=108.90 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=91.2
Q ss_pred CCceecCCC-CCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc-
Q 006662 185 GDRFSFPGG-GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER- 262 (636)
Q Consensus 185 g~~~~F~gg-g~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er- 262 (636)
+..+.|... |-|.....|.-.+.|++.++...+. +|||+|||.|.++..|+++.. ...++..|++..+++.|+++
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhH
Confidence 344454332 3344455666666777777765554 899999999999999999854 12344458899999888754
Q ss_pred ---CCCeEEEEeccccCCCCCCCeeEEEecccccccccChH----HHHHHHHhcccCCcEEEEEeC
Q 006662 263 ---GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG----LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 263 ---g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~----~~L~el~RvLKPGG~Liis~p 321 (636)
++.......+..-.+.++ +||+|+|+--+|.-..-.. +++.+..+.|++||.|.|+..
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 333312233333445555 8999999997743322223 789999999999999999965
No 83
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.89 E-value=2e-08 Score=101.94 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=84.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH-----------------cCCCeEEEEeccccCCCC---
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE-----------------RGVPALIGVMASIRLPYP--- 279 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e-----------------rg~~~~~~~~d~~~Lpf~--- 279 (636)
.+||+.|||.|.-+.+|+++|..++++ |+|+.+++.+.+ ++..+.+.++|...++..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~Gv---DlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGI---ELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEE---ecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 489999999999999999999988888 999999888644 234678889998888642
Q ss_pred CCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.+.||+|+-..+++++.++. ..+.+.+.++|+|||.+++...
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 26899999988898887666 7899999999999999988754
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=98.89 E-value=2.5e-08 Score=100.84 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=70.8
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
.+|||+|||+|.++..+++.+. .++.+ |+++.+++.++++ +..+.+...|... .+++++||+|+++..+.+
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~v---D~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAV---DISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEE---ECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 3899999999999999988754 55555 8888888876543 4455666666544 345678999999754322
Q ss_pred cccC--------------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 WGQY--------------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~~~d--------------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
-... ...++.++.++|||||.+++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1110 24578889999999999998754
No 85
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.88 E-value=1.8e-09 Score=107.69 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=96.7
Q ss_pred CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-CC-CCCCCeeEEEeccccc
Q 006662 216 DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP-YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-Lp-f~~~sFDlV~~s~~L~ 293 (636)
.+..+++||+|||||-.+..|...--...++ |+|++|++.|.+++.--.+.+++... ++ .....||+|.+..++
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv---DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl- 198 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMADRLTGV---DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL- 198 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHHhhccCC---chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH-
Confidence 3446799999999999999988774333344 99999999999998755555555432 22 456789999999999
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEeC--CCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP--PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~p--~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
.+..+.+.++.-+...|+|||.|.+|.- +..|...- .+...+-.....+..+.+..+++.+.
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l----~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL----GPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec----chhhhhccchHHHHHHHHhcCceEEE
Confidence 5555889999999999999999999953 22221111 12222333345577788888887765
No 86
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.87 E-value=1.9e-08 Score=101.16 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
......+.+.+...++. +|||||||+|.++..+++. +..++++ |+++.+++.++++ +. ++.+..+|.
T Consensus 62 p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~v---E~~~~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 62 IHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTI---ERIPELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 33445666666666665 9999999999999988876 2456666 8888888888654 33 477888887
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
...+.+.+.||+|++.....+. ...+.+.|||||.+++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 6665567889999997765332 246777899999999864
No 87
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.87 E-value=1.6e-08 Score=101.68 Aligned_cols=109 Identities=25% Similarity=0.248 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----C--CeEEEEeccc
Q 006662 202 DAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----V--PALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~~ 274 (636)
....+.+.+.+.. ......+|||||||+|.++..|++.+..++++ |+++.+++.|+++. . .+.+...+
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-- 120 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVAS---DISPQMVEEARERAPEAGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCccCcEEEEcC--
Confidence 3444455555543 11223489999999999999999987766666 88999998887652 2 35566555
Q ss_pred cCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEE
Q 006662 275 RLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYW 316 (636)
Q Consensus 275 ~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~L 316 (636)
++..+++||+|++..+++|+.... ..+++++.+++++++.+
T Consensus 121 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 121 -LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred -chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 444568899999999997775333 67888888877544443
No 88
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.86 E-value=2.2e-08 Score=100.73 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=76.5
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
....+.+.+...++. +|||||||+|.++..|++.. ..++++ |+++.+++.|+++ +. ++.+...|...
T Consensus 65 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~v---D~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSI---ERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 445666666666665 99999999999999998872 235566 7788888877654 33 46777777765
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.......||+|++.....+ +...+.+.|+|||++++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 4444568999998765522 3356889999999999874
No 89
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.83 E-value=7.4e-09 Score=104.29 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCC------eEEEEeccccCCCCCCCeeEEEe
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVP------ALIGVMASIRLPYPSRAFDMAHC 288 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~------~~~~~~d~~~Lpf~~~sFDlV~~ 288 (636)
..+. +.++|+|||+|..+..+++.--.++++ |++++|++.|.+.... ......+...|--.++|.|+|+|
T Consensus 31 ~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIat---D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 31 TEGH-RLAWDVGTGNGQAARGIAEHYKEVIAT---DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CCCc-ceEEEeccCCCcchHHHHHhhhhheee---cCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehh
Confidence 3443 389999999998777788774444455 8899999999765321 22221122222233899999999
Q ss_pred cccccccccChHHHHHHHHhcccCCc-EEEEE
Q 006662 289 SRCLIPWGQYDGLYLIEVDRVLRPGG-YWILS 319 (636)
Q Consensus 289 s~~L~h~~~d~~~~L~el~RvLKPGG-~Liis 319 (636)
..|+ ||. +.+.+++++.|+||+.| .+.+-
T Consensus 107 Aqa~-HWF-dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 107 AQAV-HWF-DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hhhH-Hhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence 9999 998 77999999999999877 55444
No 90
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.83 E-value=1.3e-08 Score=91.36 Aligned_cols=99 Identities=23% Similarity=0.370 Sum_probs=76.9
Q ss_pred cEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccCC--CCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP--YPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~Lp--f~~~sFDlV~~s~ 290 (636)
.+|||+|||+|.++..+++.+ ..++++ |+++..++.++++ + .++.+.+.|..... +++++||+|+++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gv---di~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGV---DIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEE---ESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEE---EECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 389999999999999999987 666666 8999998888754 2 25788888887765 7789999999987
Q ss_pred cccccccC-------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d-------~~~~L~el~RvLKPGG~Liis~p 321 (636)
-+...... ...+++++.++|||||.+++..|
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 66433211 15789999999999999999764
No 91
>PRK14968 putative methyltransferase; Provisional
Probab=98.81 E-value=1.1e-07 Score=92.37 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=76.0
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCC---eEEEEeccccCCCCC
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVP---ALIGVMASIRLPYPS 280 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~---~~~~~~d~~~Lpf~~ 280 (636)
+.+.+...++. +|||+|||+|.++..+++++..++++ |+++.+++.++++ +.. +.+...|... ++.+
T Consensus 15 l~~~~~~~~~~--~vLd~G~G~G~~~~~l~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 88 (188)
T PRK14968 15 LAENAVDKKGD--RVLEVGTGSGIVAIVAAKNGKKVVGV---DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRG 88 (188)
T ss_pred HHHhhhccCCC--EEEEEccccCHHHHHHHhhcceEEEE---ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccc
Confidence 33444333444 89999999999999999887666666 8888888877543 222 5666666543 4555
Q ss_pred CCeeEEEeccccccccc--------------------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIPWGQ--------------------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h~~~--------------------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++||+|+++..+.+..+ ....+++++.++|||||.+++..+
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 68999998765433110 024579999999999999988765
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.81 E-value=1.2e-07 Score=96.64 Aligned_cols=113 Identities=17% Similarity=0.268 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
...+++.+.+.+.. ...+|||+|||+|.++..+++. +..++++ |+++.+++.++++ +. ++.+..++.
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~~~v~~i---D~~~~~~~~a~~~~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPDARVTAV---DISPEALAVARKNAARLGLDNVTFLQSDW 146 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence 44555666555532 2348999999999999999986 4455566 8888888877643 33 367777776
Q ss_pred ccCCCCCCCeeEEEecccccc------cccC-------------------hHHHHHHHHhcccCCcEEEEEe
Q 006662 274 IRLPYPSRAFDMAHCSRCLIP------WGQY-------------------DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h------~~~d-------------------~~~~L~el~RvLKPGG~Liis~ 320 (636)
.. ++++++||+|+++..+.. +..+ ...++.++.++|+|||.+++..
T Consensus 147 ~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 54 456789999999654321 1000 0257889999999999999974
No 93
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.81 E-value=2.5e-08 Score=108.35 Aligned_cols=97 Identities=25% Similarity=0.334 Sum_probs=75.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH----HcCC-CeEEEEeccccC--CCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRL--PYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~----erg~-~~~~~~~d~~~L--pf~~~sFDlV~~s~ 290 (636)
..+||||||+|.++..++++ ...++++ |++..+++.+. +++. ++.+..+|+..+ .+++++||.|++++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGI---EI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGI---EIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 38999999999999999987 3445555 77777766554 3343 577888887654 47889999999976
Q ss_pred cccccccCh------HHHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWGQYD------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~~d~------~~~L~el~RvLKPGG~Liis~ 320 (636)
.. +|.... ..++.++.|+|+|||.+.+.+
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 675433 479999999999999999985
No 94
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.80 E-value=5.7e-08 Score=104.05 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=83.0
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPS 280 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~ 280 (636)
..+..+....++. +|||+|||+|.++..++..+..++++ |+++.+++.++++ +. .+.+...|...+|+++
T Consensus 172 ~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g~---Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 172 RAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIGC---DIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEEE---cCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence 3444444445555 89999999999998888777776676 8898888876644 33 3577788998999888
Q ss_pred CCeeEEEecccccc---ccc----C-hHHHHHHHHhcccCCcEEEEEeC
Q 006662 281 RAFDMAHCSRCLIP---WGQ----Y-DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 281 ~sFDlV~~s~~L~h---~~~----d-~~~~L~el~RvLKPGG~Liis~p 321 (636)
++||+|+++.-+.. ... + ...++.++.++|||||++++..|
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 89999999643211 000 1 26799999999999999999876
No 95
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.80 E-value=5.1e-08 Score=96.39 Aligned_cols=152 Identities=16% Similarity=0.231 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHH----hhcc--cchhh
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQ 527 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~----eRgl--i~~~~ 527 (636)
+.|++++-.-..+...+.. ..+|||+|||+|.++..|+. .+- ..|+.+|.++.++..+. +.|+ +-.++
T Consensus 27 ~~~~~~~~d~l~l~~~l~~---g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG---GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC---CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3899887543333333444 56899999999998887764 221 35667777766775554 3444 33344
Q ss_pred ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE--EeccCC
Q 006662 528 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR--IADHEN 605 (636)
Q Consensus 528 ~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~--~~~~e~ 605 (636)
.-.+.+.. ..+||+|-++. -..+++++-++.|+|||||.+++-+.......+.++++.+.|.+. +.-+-.
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred ccHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecC
Confidence 33333433 57999999854 245789999999999999999999888888999999999999865 222223
Q ss_pred CCCCcceEEEEEec
Q 006662 606 GPRQREKILFANKK 619 (636)
Q Consensus 606 ~~~~~~~~l~~~K~ 619 (636)
|-.++-.+.|.+|+
T Consensus 174 ~~~~~~~~~~~~~~ 187 (187)
T PRK00107 174 GLDGERHLVIIRKK 187 (187)
T ss_pred CCCCcEEEEEEecC
Confidence 44345567777774
No 96
>PRK04266 fibrillarin; Provisional
Probab=98.79 E-value=1.2e-07 Score=96.56 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=69.6
Q ss_pred hhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccC----CCCCC
Q 006662 211 LINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRL----PYPSR 281 (636)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~L----pf~~~ 281 (636)
.+++.++. +|||+|||+|.++..+++.. -.++++ |+++.+++.+.++ ..++.+..+|.... ++. +
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~av---D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAV---EFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEE---ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-c
Confidence 46666666 99999999999999999862 345555 8888777644322 13466666666431 223 5
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|++.... ......++.++.|+|||||+++++.+
T Consensus 141 ~~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 141 KVDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred cCCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 69999864321 11124568999999999999999754
No 97
>PLN03075 nicotianamine synthase; Provisional
Probab=98.78 E-value=4.6e-08 Score=102.82 Aligned_cols=99 Identities=10% Similarity=0.139 Sum_probs=75.3
Q ss_pred CCcEEEEeCCCCcHHHHHHhh--c--CCEEEEcCcCCchHHHHHHHHHcC-------CCeEEEEeccccCCCCCCCeeEE
Q 006662 218 SIRTAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEAQVQFALERG-------VPALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~--~--~v~vv~i~p~Dis~a~l~~A~erg-------~~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
.+++|||||||.|.++..++. . +..++++ |.++++++.|++.. ..+.|..+|....+...+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~gi---D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNF---DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 345999999998855444332 2 3345566 88988888887532 24788888877654345789999
Q ss_pred Eecccccccc-cChHHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWG-QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~-~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
++. ++++|. .++..++..+.+.|+|||+|++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 998 887884 566999999999999999999985
No 98
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.78 E-value=1.1e-07 Score=94.58 Aligned_cols=162 Identities=16% Similarity=0.269 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHH----HHHcCCC-e-EEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF----ALERGVP-A-LIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~----A~erg~~-~-~~~~~d~~~ 275 (636)
+...+.|.++++.. +. +|||||||||..+.+++++-.. +...|.|..+....- ..+.+.+ + .-..+|+..
T Consensus 12 ~pIl~vL~~~l~~~-~~--~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPDS-GT--RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCcc-Cc--eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 34555566665322 11 6999999999999999998432 246666776655321 2222221 1 011223322
Q ss_pred C--CC------CCCCeeEEEecccccccccCh--HHHHHHHHhcccCCcEEEEEeCCCCccccccC-------C---CCc
Q 006662 276 L--PY------PSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWESHWKG-------W---NRT 335 (636)
Q Consensus 276 L--pf------~~~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~-------W---~~t 335 (636)
- |. ..++||+|+|..++ |+.+-. +.+|+.+.++|+|||.|++.+|...--..... | +++
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred CCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC
Confidence 2 32 35689999999988 766554 78999999999999999999983331111000 1 111
Q ss_pred hhhhHHHHHHHHHHHHHhceEeec-----ccccEEEEeC
Q 006662 336 TEDLKSEQNGIETIARSLCWKKLI-----QKKDLAIWQK 369 (636)
Q Consensus 336 ~e~l~~~~~~ie~la~~l~Wk~v~-----~~~~~aIWqK 369 (636)
.-.++. .+.+.+++...+++... .++.+.||+|
T Consensus 167 ~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 167 EWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 223332 34688899998887654 2445677876
No 99
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.74 E-value=7e-08 Score=102.19 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=70.1
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEecccc-CCCCCC----CeeE
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIR-LPYPSR----AFDM 285 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~-Lpf~~~----sFDl 285 (636)
.+|||+|||+|..+..|++. +..++.+ |+|++|++.+.++ . +++....+|... ++++.. ...+
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~i---DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPI---DISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEE---ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 48999999999999999887 3555666 9999999888654 2 335556777654 344433 2334
Q ss_pred EEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 286 V~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
+++...+.++.++. ..+|+++.++|+|||.|++..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 44445554444222 679999999999999999975
No 100
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.74 E-value=2.2e-07 Score=92.31 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=73.6
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEecccc-CCCC
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIR-LPYP 279 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~-Lpf~ 279 (636)
..+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.++++ + .++.+...+... ++..
T Consensus 34 ~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~av---D~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 34 SKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAV---DKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 344445555 9999999999999988764 3455666 8888888877543 3 245666666654 2333
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+.||.|++.... .+...++.++.++|||||++++...
T Consensus 109 ~~~~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 NEKFDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEee
Confidence 4689999985422 3557899999999999999998643
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.74 E-value=7.4e-08 Score=81.63 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=72.3
Q ss_pred EEEEeCCCCcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHH---c--CCCeEEEEeccccCCC-CCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALE---R--GVPALIGVMASIRLPY-PSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~e---r--g~~~~~~~~d~~~Lpf-~~~sFDlV~~s~~L~ 293 (636)
++||+|||.|.++..+++ ....+..+ |.++.+++.+.+ . .....+...+...... ..+.||+|++..++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGV---DISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999999988 34455555 778777776651 1 1345666666655543 567899999999885
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
++......+++.+.+.|+|||.+++.
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53556689999999999999999886
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.73 E-value=1e-07 Score=95.41 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=74.8
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPY 278 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf 278 (636)
....+.+++...++. +|||+|||+|.++..|++....++++ |+++.+++.++++ +. ++.+...|......
T Consensus 66 ~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~~v~~v---d~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 66 MVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLVRRVFSV---ERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHhCEEEEE---eCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 344556666555555 99999999999999888775455556 7788888877654 22 46677666543222
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+.||+|++...+.++ ..++.+.|+|||.+++...
T Consensus 141 ~~~~fD~I~~~~~~~~~-------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI-------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh-------hHHHHHhcCCCcEEEEEEc
Confidence 34789999997765332 3567899999999999754
No 103
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.73 E-value=1.6e-07 Score=96.28 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=85.7
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcC------CCe
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERG------VPA 266 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg------~~~ 266 (636)
..|+.+.|.. .|..+.+... ..+|||+|||+|..+..++++ . +.++++ ++.+.+.++|.++- ..+
T Consensus 25 ~~~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~V---Eiq~~~a~~A~~nv~ln~l~~ri 97 (248)
T COG4123 25 CGFRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGV---EIQEEAAEMAQRNVALNPLEERI 97 (248)
T ss_pred CccccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEE---EeCHHHHHHHHHHHHhCcchhce
Confidence 3355666765 4666655444 459999999999999999998 3 444455 88889998887542 236
Q ss_pred EEEEeccccCC--CCCCCeeEEEecccccccccC-----------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 267 LIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQY-----------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 267 ~~~~~d~~~Lp--f~~~sFDlV~~s~~L~h~~~d-----------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+...|...+. ....+||+|+|+--+..-... .+.+++...++|||||++.+..+
T Consensus 98 ~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 98 QVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred eEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 77777776654 334579999997655332222 24688889999999999999976
No 104
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.71 E-value=1.1e-08 Score=106.29 Aligned_cols=127 Identities=15% Similarity=0.232 Sum_probs=89.2
Q ss_pred hcchhhHHHHHHHHHHHHHhhhc--cCCC--------------CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCc
Q 006662 448 EMFREDTALWKKRVTYYKSVDYQ--LAQP--------------GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKI 511 (636)
Q Consensus 448 ~~f~~d~~~w~~~v~~y~~~~~~--l~~~--------------~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~ 511 (636)
..|.+.+++-...+..|+.+++. +.+| .....|||+|||+|+++.+|++.. ...|+.+|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 56888888877778888877652 3332 245789999999999999887642 23566777777
Q ss_pred cchHHHHhhcc----cchhhcccccc--CCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 512 NTLGVIYERGL----IGTYQNWCEAM--STYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 512 ~~l~~~~eRgl----i~~~~~~ce~~--~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+++..+.+|-- +... +..+ .+|| .+||+|++...|-.. ...+...+|-|+-|+|||||++++.|.
T Consensus 86 ~~~~~a~~~~~~~~~i~~~---~~D~~~~~~~~~~FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFE---ANDILKKDFPENTFDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCcCCceEEE---ECCcccCCCCCCCeEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88888887632 2221 1222 2465 799999985544322 223568999999999999999999874
No 105
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.69 E-value=1.7e-07 Score=90.91 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=77.2
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH----HcCCC--eEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~----erg~~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
+|||+|||.|.+...|++.+... .+.++|.++.+++.|. .++.+ +.|.++|+..-.+..+.||+|+--..+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999997642 2566699999998875 33444 88999998777788899999996444321
Q ss_pred c--ccC-----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 W--GQY-----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~--~~d-----~~~~L~el~RvLKPGG~Liis~p 321 (636)
. .++ +..++..+.++|+|||+|+|..-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 1 111 14688999999999999999865
No 106
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.69 E-value=3.5e-07 Score=100.21 Aligned_cols=134 Identities=10% Similarity=0.124 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~ 274 (636)
++..++.+.+.++ ++ .+|||+|||+|.++..++.. +..++++ |+++.+++.|+++ +.++.+..+|..
T Consensus 238 TE~LVe~aL~~l~--~~--~rVLDLGcGSG~IaiaLA~~~p~a~VtAV---DiS~~ALe~AreNa~~~g~rV~fi~gDl~ 310 (423)
T PRK14966 238 TEHLVEAVLARLP--EN--GRVWDLGTGSGAVAVTVALERPDAFVRAS---DISPPALETARKNAADLGARVEFAHGSWF 310 (423)
T ss_pred HHHHHHHhhhccC--CC--CEEEEEeChhhHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCcEEEEEcchh
Confidence 3445555544332 23 38999999999999998865 4556666 8899999888754 445777777765
Q ss_pred cCCCC-CCCeeEEEeccccccccc--------------------Ch----HHHHHHHHhcccCCcEEEEEeCCCCccccc
Q 006662 275 RLPYP-SRAFDMAHCSRCLIPWGQ--------------------YD----GLYLIEVDRVLRPGGYWILSGPPVNWESHW 329 (636)
Q Consensus 275 ~Lpf~-~~sFDlV~~s~~L~h~~~--------------------d~----~~~L~el~RvLKPGG~Liis~p~~~w~~~~ 329 (636)
...++ .++||+|+|+.-...-.. +. ..++.++.+.|+|||.+++....
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~------- 383 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF------- 383 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-------
Confidence 43332 457999999764321110 11 25667778899999999887431
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 330 KGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 330 ~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
. ..+.++++++..+|+.+.
T Consensus 384 ----~-------Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 384 ----D-------QGAAVRGVLAENGFSGVE 402 (423)
T ss_pred ----c-------HHHHHHHHHHHCCCcEEE
Confidence 0 123466677777776543
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.67 E-value=4.6e-07 Score=93.83 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG-----VPALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~ 273 (636)
.+.+++.+...+...++ .+|||+|||+|.++..++... ..++++ |+++.+++.++++. .++.+...|.
T Consensus 93 te~l~~~~~~~~~~~~~--~~vLDiG~GsG~~~~~la~~~~~~~v~~i---Dis~~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 93 TEELVEWALEALLLKEP--LRVLDLGTGSGAIALALAKERPDAEVTAV---DISPEALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred cHHHHHHHHHhccccCC--CEEEEEcCcHHHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 34555555544333333 489999999999999999873 555556 88999988887652 2466776665
Q ss_pred ccCCCCCCCeeEEEecccccccc-------------------------cChHHHHHHHHhcccCCcEEEEEe
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWG-------------------------QYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~-------------------------~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.. +++.++||+|+++.-..... .....++.++.++|+|||++++..
T Consensus 168 ~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 168 FE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33 33457899999964332110 001457788889999999999964
No 108
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.65 E-value=6.9e-07 Score=104.90 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=79.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----ccc----chhh-ccccccCCCCCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli----~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
.++|||++||+|+|+.+++..+. -.|+.+|.++..+..+.+. |+- -+++ |..+-+..+.+.||+|=++-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999988754 2466667776777766542 331 1111 22222222367899987752
Q ss_pred c-cccCC-------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEec
Q 006662 548 I-FSLYK-------DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 548 ~-fs~~~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~ 602 (636)
= |+..+ ..-+.+.++...-|+|+|||.+++......+....+.+..-.+.+++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 2 21111 0112457888889999999999997655544445666777778887664
No 109
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.65 E-value=2.9e-07 Score=91.67 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=77.6
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDl 285 (636)
+.+.+.+...+. ...|-|+|||.+.++..+. .+..+.++ |+.. .+-.+...|+..+|+++++.|+
T Consensus 61 d~iI~~l~~~~~-~~viaD~GCGdA~la~~~~-~~~~V~Sf---DLva----------~n~~Vtacdia~vPL~~~svDv 125 (219)
T PF05148_consen 61 DVIIEWLKKRPK-SLVIADFGCGDAKLAKAVP-NKHKVHSF---DLVA----------PNPRVTACDIANVPLEDESVDV 125 (219)
T ss_dssp HHHHHHHCTS-T-TS-EEEES-TT-HHHHH---S---EEEE---ESS-----------SSTTEEES-TTS-S--TT-EEE
T ss_pred HHHHHHHHhcCC-CEEEEECCCchHHHHHhcc-cCceEEEe---eccC----------CCCCEEEecCccCcCCCCceeE
Confidence 445555543322 3489999999999997764 44455566 4321 0113667889999999999999
Q ss_pred EEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeeccccc--
Q 006662 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD-- 363 (636)
Q Consensus 286 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~~-- 363 (636)
+++..+| +..+-..++.|+.|+|||||.|.|..-..++. ..+.+.+..+.+|++...+...
T Consensus 126 ~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~---------------~~~~F~~~~~~~GF~~~~~d~~n~ 188 (219)
T PF05148_consen 126 AVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEVKSRFE---------------NVKQFIKALKKLGFKLKSKDESNK 188 (219)
T ss_dssp EEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S----------------HHHHHHHHHCTTEEEEEEE--ST
T ss_pred EEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEecccCc---------------CHHHHHHHHHHCCCeEEecccCCC
Confidence 9987776 44577899999999999999999986422111 1244666788999988764321
Q ss_pred ---EEEEeCCC
Q 006662 364 ---LAIWQKPT 371 (636)
Q Consensus 364 ---~aIWqKp~ 371 (636)
+..++|..
T Consensus 189 ~F~~f~F~K~~ 199 (219)
T PF05148_consen 189 HFVLFEFKKIR 199 (219)
T ss_dssp TEEEEEEEE-S
T ss_pred eEEEEEEEEcC
Confidence 34566654
No 110
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.65 E-value=8.8e-08 Score=102.68 Aligned_cols=101 Identities=28% Similarity=0.327 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcC---------------CCeEEEEeccccC----C
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG---------------VPALIGVMASIRL----P 277 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg---------------~~~~~~~~d~~~L----p 277 (636)
...+|||+|||-|.-..-+...++ ..+++ |++...++.|++|. ..+.+...|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~---Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGI---DISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEE---ES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEE---eCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 445999999999887777766654 44556 88888888887664 2355566654321 1
Q ss_pred CC--CCCeeEEEecccccccccCh---HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YP--SRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~--~~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~Liis~p 321 (636)
++ ...||+|-|.+++|+..... ..+|.++.+.|||||+|+.+.|
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 23 35999999999997766555 4699999999999999999987
No 111
>PTZ00146 fibrillarin; Provisional
Probab=98.64 E-value=3.5e-07 Score=95.93 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=67.7
Q ss_pred ccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHH----HHHHHHHcCCCeEEEEecccc---CCCCCCC
Q 006662 213 NLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEA----QVQFALERGVPALIGVMASIR---LPYPSRA 282 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a----~l~~A~erg~~~~~~~~d~~~---Lpf~~~s 282 (636)
.+.++. +|||+|||+|.++..+++.- -.++.+ |+++. +++.+.++ .++.+...|... ......+
T Consensus 129 ~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAV---D~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 129 PIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAV---EFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEE---ECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCC
Confidence 445555 99999999999999999871 234444 66654 55555444 456666666532 1223458
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
||+|++.... .++...++.++.++|||||+|++..
T Consensus 203 vDvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 203 VDVIFADVAQ---PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CCEEEEeCCC---cchHHHHHHHHHHhccCCCEEEEEE
Confidence 9999986632 2233567789999999999999963
No 112
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.64 E-value=9.1e-07 Score=93.05 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=70.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
.+|||+|||+|.++..++++ +..++++ |+++.+++.|+++ +. .+.+...|... ++++++||+|+++.-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~av---Dis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAV---DISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 48999999999999999986 4566666 8899999888754 43 36677777533 345568999999632
Q ss_pred ccc------c----ccCh--------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIP------W----GQYD--------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h------~----~~d~--------------~~~L~el~RvLKPGG~Liis~p 321 (636)
... . ..++ ..++.++.++|+|||++++...
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 111 0 0011 4578889999999999998754
No 113
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.62 E-value=1e-08 Score=96.54 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=72.3
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCC-CCccceeeeccccccCC
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY-PRTYDLIHADSIFSLYK 553 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~y-p~t~Dl~H~~~~fs~~~ 553 (636)
....+|||+|||.|.++..|.+.+. +++.+|.++.++.. +......+ ....... +++||+|.|.++|....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~--~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNF--DAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEE--ECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhh--hhhhhhccccchhhHhhHHHHhhcc
Confidence 3477999999999999999988876 66777777556655 22211111 0112223 38999999999998766
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
+...+|-+|-|+|+|||++++.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 5789999999999999999999764
No 114
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.62 E-value=4.1e-07 Score=90.07 Aligned_cols=111 Identities=17% Similarity=0.091 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
..+....+.+.+...++. +|||+|||+|.++..+++. +..++.+ |+++.+++.++++ +. ++.+...|.
T Consensus 25 ~~~v~~~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~v---D~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 25 KREVRLLLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIAI---ERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred HHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 344444566666555555 8999999999999998864 3456666 8888888877643 32 466666665
Q ss_pred cc-CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IR-LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~-Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ++.....+|.++... ..+...++.++.++|+|||++++..+
T Consensus 100 ~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 33 222223457665421 22347899999999999999999864
No 115
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.61 E-value=5.5e-06 Score=90.35 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=83.5
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc-----cchhhccccccCCCC-Cccceeeec
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL-----IGTYQNWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl-----i~~~~~~ce~~~~yp-~t~Dl~H~~ 546 (636)
..|||+|||+|-.+.+|+++ |- ..|+.+|.+...+..+.+. +. +.++ +...++..+ .+||+|-|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~--~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCCCEEEEEEC
Confidence 58999999999999999875 22 2455567666677666542 11 1222 233445554 689999998
Q ss_pred cccccCCC--CcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 547 SIFSLYKD--RCEMEDVLLEMDRILRPEGSVIIRD--DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 547 ~~fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
--|-..+. .-....++.+.-|+|+|||.++|-- ..++..+++++.. ++...... .+-+|+-++|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~----~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccC----CCEEEEEEEe
Confidence 77653221 1123578899999999999999963 3446677777554 33333222 4667888877
No 116
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=3.6e-08 Score=98.38 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=85.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
...++|||||.|.....|..+++. .+...|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 347999999999999999998753 333448888999888654 345677888999999999999999999999 99
Q ss_pred ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..+....+.++...|||.|.|+-+..
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHh
Confidence 98889999999999999999998743
No 117
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.61 E-value=7.5e-08 Score=99.93 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=71.8
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc---------cchhhccccccCCCC-Cccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL---------IGTYQNWCEAMSTYP-RTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl---------i~~~~~~ce~~~~yp-~t~Dl~H~ 545 (636)
..+|||+|||+|.++..|.++ +. --+|+.+|.+++++..+.+|.- +...+.-.+.+ +|| .+||+|.+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEE
Confidence 568999999999999888764 21 0266778888899999987631 11222112333 455 79999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..++.... +...+|.||-|+|||||.+++.|
T Consensus 152 ~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 76665443 56899999999999999999986
No 118
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.9e-07 Score=90.98 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=80.5
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCC
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPY 278 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf 278 (636)
....+.+++...++. +|||||||+|..++.|++..-.++++ +..+...+.|+++ +. ++.+.++|...---
T Consensus 60 ~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~si---Er~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSI---ERIEELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEE---EEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 445677777777777 99999999999999999985567777 7788888888654 33 57777777644333
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+...||.|+.+.+....+ ..+.+.||+||.+++-.
T Consensus 135 ~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 457899999988774444 46778899999999964
No 119
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.59 E-value=1.3e-07 Score=91.04 Aligned_cols=72 Identities=22% Similarity=0.107 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHHcC--------CCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 249 RDTHEAQVQFALERG--------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 249 ~Dis~a~l~~A~erg--------~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.|+|+.|++.|+++. .++.+.++|...+|+++++||+|++..+++++ +++..+++++.|+|||||.|++..
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEEEE
Confidence 388999999986542 24789999999999999999999999999554 588999999999999999999985
Q ss_pred C
Q 006662 321 P 321 (636)
Q Consensus 321 p 321 (636)
.
T Consensus 82 ~ 82 (160)
T PLN02232 82 F 82 (160)
T ss_pred C
Confidence 4
No 120
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=2e-07 Score=94.15 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcCC------CeEEEEe
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV------PALIGVM 271 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg~------~~~~~~~ 271 (636)
+-..+.+-++++.......+||+||||.|.....+++- +..+... |.++.+++..+++.. .+.+..+
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac---Dfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYAC---DFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEc---CCChHHHHHHHhccccchhhhcccceec
Confidence 33445566666544433347999999999988888775 2445555 999999998875531 2233333
Q ss_pred cccc--CCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCC
Q 006662 272 ASIR--LPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPV 323 (636)
Q Consensus 272 d~~~--Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~ 323 (636)
.... -|.+.+++|+|++.++|....++. ..++.++.++|||||.+++.....
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 3333 346689999999999998777666 789999999999999999996533
No 121
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.59 E-value=1.1e-06 Score=92.37 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCC--eEEEEec
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMA 272 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~~~d 272 (636)
++.+++.+.+.+..... ..+|||+|||+|.++..++.. +..++++ |+++.+++.|+++ +.. +.+..+|
T Consensus 98 te~lv~~~l~~~~~~~~-~~~vLDlG~GsG~i~l~la~~~~~~~v~av---Dis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 98 TEELVEKALASLISQNP-ILHILDLGTGSGCIALALAYEFPNAEVIAV---DISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred cHHHHHHHHHHhhhcCC-CCEEEEEeccHhHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 34455554443321111 148999999999999999986 3456666 8899999888754 332 6777777
Q ss_pred cccCCCCCCCeeEEEecccccc------------ccc------------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 273 SIRLPYPSRAFDMAHCSRCLIP------------WGQ------------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 273 ~~~Lpf~~~sFDlV~~s~~L~h------------~~~------------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
... +++.+.||+|+++.-... +.+ ....++.++.++|+|||++++...
T Consensus 174 ~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 174 LFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred hhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 543 345558999999632211 110 114678889999999999999754
No 122
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.58 E-value=2.5e-07 Score=91.00 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=63.9
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCe
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAF 283 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp--------f~~~sF 283 (636)
.++. +|||+|||+|.++..++++. ..++++ |+++.+ ....+.+...|....+ ++.++|
T Consensus 31 ~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~v---Dis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAV---DLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEE---eccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 4444 89999999999999888762 234444 555433 1234556666655432 456789
Q ss_pred eEEEeccccc---ccccC-------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLI---PWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~---h~~~d-------~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|++..+.+ +|..+ ...++.++.++|+|||++++..+
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9999864321 11111 25789999999999999999753
No 123
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.58 E-value=8.7e-08 Score=97.94 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=76.7
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhccc-c-----hhhccccccCCCC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-G-----TYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli-~-----~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
+..+|||++||+|=+|..+++.-= .-.|+..|-+.+||.++.+|-.= | .++.-.|.++ || ++||++=+..-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence 578999999999999999987621 45778889888999999999772 2 2233335666 76 99999877443
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+-.. -+++..|-||-|||+|||.+++-|
T Consensus 129 lrnv---~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNV---TDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcC---CCHHHHHHHHHHhhcCCeEEEEEE
Confidence 3332 378999999999999999998865
No 124
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.57 E-value=8e-08 Score=100.46 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=74.7
Q ss_pred HHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHH----HhhcccchhhccccccCC
Q 006662 461 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI----YERGLIGTYQNWCEAMST 535 (636)
Q Consensus 461 v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~eRgli~~~~~~ce~~~~ 535 (636)
.+.+..++..++- ....+|||+|||.||++-+++++ ++ +|+.+..++++...+ .++||-....--+..+..
T Consensus 48 ~~k~~~~~~~~~l-~~G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 48 ERKLDLLCEKLGL-KPGDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHhCC-CCCCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 3344444444333 34779999999999999999988 65 344444555676654 578886555544555666
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 536 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 536 yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
++-+||-|=+.++|..... -+.+.+|-.++|+|+|||.+++.
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ---S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred cCCCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 7779999999898886643 46789999999999999999985
No 125
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.57 E-value=2.5e-08 Score=98.17 Aligned_cols=176 Identities=17% Similarity=0.193 Sum_probs=109.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhccC----CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCC
Q 006662 190 FPGGGTMFPRGADAYIDDIGKLINLK----DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVP 265 (636)
Q Consensus 190 F~ggg~~f~~g~~~~id~L~~lL~l~----~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~ 265 (636)
|.|.|.||--+.+.+. +++.+. .....++||+|+|.|..+..++..-- .+...++|..|....++.+-+
T Consensus 84 ~lgrGsMFifSe~QF~----klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFR----KLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKKNYN 156 (288)
T ss_pred ccccCceEEecHHHHH----HHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhcCCc
Confidence 7788888866655443 333322 22346899999999999999887632 244447788888877666533
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccC-CcEEEEE--eCCCCccc-cc-cCCCCchhhhH
Q 006662 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP-GGYWILS--GPPVNWES-HW-KGWNRTTEDLK 340 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKP-GG~Liis--~p~~~w~~-~~-~~W~~t~e~l~ 340 (636)
+. ...+..-.+-.||+|.|...| .-..++..+|+.+..+|+| +|.++++ -|-..|.. .. .-|.++.+-++
T Consensus 157 Vl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le 231 (288)
T KOG3987|consen 157 VL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLE 231 (288)
T ss_pred ee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHH
Confidence 32 222222234469999998888 4455889999999999999 8988876 35444544 21 22555533333
Q ss_pred -------HHHHHHHHHHHHhceEeecccccEEEEeCCCCCcccccccccCCCCCCccCCCcCCccc
Q 006662 341 -------SEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWY 399 (636)
Q Consensus 341 -------~~~~~ie~la~~l~Wk~v~~~~~~aIWqKp~~~~~c~~~r~~~~~~~~C~~~~~~~~wy 399 (636)
+....+-++.+..++. ...+. +.|++|++|..++.+|
T Consensus 232 ~~Gr~~ee~v~~~~e~lr~~g~~-----------------veawT-----rlPYLCEGDm~ns~Y~ 275 (288)
T KOG3987|consen 232 NNGRSFEEEVARFMELLRNCGYR-----------------VEAWT-----RLPYLCEGDMHNSFYW 275 (288)
T ss_pred hcCccHHHHHHHHHHHHHhcCch-----------------hhhhh-----cCCeecccccccceEE
Confidence 2222233333433332 23343 3499999887666555
No 126
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.56 E-value=3.1e-07 Score=92.44 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
......+.+.+.+.++. +|||||||+|.+++.|+.. + ..++++ |..+...+.|+++ +. ++.+..+|.
T Consensus 58 P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~v---E~~~~l~~~A~~~l~~~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSV---ERDPELAERARRNLARLGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEE---ESBHHHHHHHHHHHHHHTTHSEEEEES-G
T ss_pred HHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEE---CccHHHHHHHHHHHHHhccCceeEEEcch
Confidence 34555677788888877 9999999999999999886 2 235556 7777777777654 33 678888886
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
....-....||.|++..+....+ ..+.+.||+||++++-..
T Consensus 133 ~~g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 133 SEGWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred hhccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEEc
Confidence 54333456899999988773332 457778999999999743
No 127
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.56 E-value=5.3e-07 Score=91.34 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=75.8
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH-HcCC----------------CeEEEEeccccCCCCC-C
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL-ERGV----------------PALIGVMASIRLPYPS-R 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~-erg~----------------~~~~~~~d~~~Lpf~~-~ 281 (636)
.+||..|||.|....+|+++|..++++ |+++.+++.+. +++. .+.+.++|...++-.. +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 389999999999999999999988888 99999999874 3331 2467778887766433 5
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
+||+|+=..+|+-+.++. ..+.+.+.++|+|||.+++.
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 899999877786666555 88999999999999994443
No 128
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.56 E-value=1.1e-07 Score=98.09 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=77.3
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccCCCCCccceee
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYPRTYDLIH 544 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~~yp~t~Dl~H 544 (636)
.++..+.. .....|||+|||.|.++.+|.++.- ...|+.+|.++.++..+.++++ .+.+ |- +.+. ...+||+|+
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~-~~~~-~~~~fD~v~ 94 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDV-RDWK-PKPDTDVVV 94 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcCh-hhCC-CCCCceEEE
Confidence 34544554 4568999999999999999987610 1356777888899999999875 2222 21 2221 237899999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++.+|-... +.+.+|.++-|+|||||++++..
T Consensus 95 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 988876443 45889999999999999999963
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.55 E-value=3.5e-07 Score=88.50 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=76.1
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRA 282 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~~~s 282 (636)
+.+.+.+....+. +|||+|||+|.++..+++++..++.+ |+++.+++.++++. .++.+...|...+++++..
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~~v~~v---E~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERAARVTAI---EIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcCCeEEEE---ECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 3455555555544 89999999999999999986666666 88888988887663 3577888899888888778
Q ss_pred eeEEEecccccccccChHHHHHHHHhc--ccCCcEEEEE
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRV--LRPGGYWILS 319 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~Rv--LKPGG~Liis 319 (636)
||.|+++.-+ +.. ...+..+.+. +.++|.+++.
T Consensus 78 ~d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 78 PYKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 9999997644 332 2334444332 4578888887
No 130
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.55 E-value=2.1e-06 Score=88.70 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEecccc
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIR 275 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~ 275 (636)
.++.+++.+...+... ....+|||+|||+|.++..+++. +..++.+ |+++.+++.|+++. ....+...|...
T Consensus 69 ~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~v---Dis~~al~~A~~N~~~~~~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAA---DIDPAAVRCARRNLADAGGTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 3455555555544321 12248999999999999999875 4455555 88999998887552 124566666543
Q ss_pred -CCC-CCCCeeEEEecccccccc---------------------cC----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 -LPY-PSRAFDMAHCSRCLIPWG---------------------QY----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 -Lpf-~~~sFDlV~~s~~L~h~~---------------------~d----~~~~L~el~RvLKPGG~Liis~p 321 (636)
++- ..++||+|+++.-..... .+ ...++..+.++|+|||.+++...
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 135799999976432110 01 13677778899999999999854
No 131
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.53 E-value=2.2e-07 Score=93.14 Aligned_cols=140 Identities=12% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
...++||.|+|.|+.+..++-.-...+++ ++..+..++.|++.. .-..+.....+....+.++||+|.+-+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 35689999999999999887664443333 467888888887432 22455556666665456799999999999
Q ss_pred cccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeeccc
Q 006662 293 IPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (636)
Q Consensus 293 ~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~ 361 (636)
.|+.++. -.+|+.+...|+|||.+++-..-..-.. ..+......+....+.+.++++..+++.+.+.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~--~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF--DEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE--EEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC--cccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 9998655 7899999999999999999753111100 01223333333445667888999999888753
No 132
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.50 E-value=1.6e-06 Score=92.29 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=70.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
.+|||+|||+|.++..++.. +..++.+ |+++.+++.|+++ +. .+.+...|... ++++++||+|+++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~av---Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAV---DISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCC
Confidence 48999999999999999886 4556666 8999999888754 33 36777777533 234568999999732
Q ss_pred ccc------------ccc--------C----hHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIP------------WGQ--------Y----DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h------------~~~--------d----~~~~L~el~RvLKPGG~Liis~p 321 (636)
... +.+ + ...++.++.++|+|||++++...
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 210 000 0 14678899999999999999743
No 133
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.49 E-value=8e-07 Score=90.43 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=85.5
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEE
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
|++.+...++ ...|-|+|||.+.++. ..+ .+..+++.+ ++-.+...|+.++|.++++.|++
T Consensus 171 ii~~ik~r~~-~~vIaD~GCGEakiA~--~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDva 232 (325)
T KOG3045|consen 171 IIRKIKRRPK-NIVIADFGCGEAKIAS--SERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVA 232 (325)
T ss_pred HHHHHHhCcC-ceEEEecccchhhhhh--ccccceeeeeeec---------------CCCceeeccccCCcCccCcccEE
Confidence 4444433333 3479999999998875 122 444443322 22346677899999999999999
Q ss_pred EecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeeccccc---
Q 006662 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD--- 363 (636)
Q Consensus 287 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~~--- 363 (636)
++..+| +..+...++.|++|+|+|||.|+|..-...+. + ...+.+.+..+||........
T Consensus 233 V~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~-----------d----v~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 233 VFCLSL--MGTNLADFIKEANRILKPGGLLYIAEVKSRFS-----------D----VKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred EeeHhh--hcccHHHHHHHHHHHhccCceEEEEehhhhcc-----------c----HHHHHHHHHHcCCeeeehhhhcce
Confidence 975555 45677899999999999999999986422211 1 223666778889976543322
Q ss_pred --EEEEeCCC
Q 006662 364 --LAIWQKPT 371 (636)
Q Consensus 364 --~aIWqKp~ 371 (636)
+..|+|+.
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 34556654
No 134
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.48 E-value=9.1e-07 Score=90.26 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=74.6
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
.++|||||+|.|.++..++++ +..++-+ |. +..++.+.+ ...+.+..+|.. -++|. +|+++..++||+|.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~---Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVF---DL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEE---E--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceee---cc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 358999999999999999987 5555544 55 455666655 567889988887 66776 99999999999998
Q ss_pred cCh-HHHHHHHHhcccCC--cEEEEEeC
Q 006662 297 QYD-GLYLIEVDRVLRPG--GYWILSGP 321 (636)
Q Consensus 297 ~d~-~~~L~el~RvLKPG--G~Liis~p 321 (636)
++. ..+|+++.+.|+|| |.++|...
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 665 78999999999999 99999864
No 135
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.47 E-value=3.3e-07 Score=93.99 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=71.3
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCC-Cccceeeecccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
....+|||+|||.|.++..|.+.+. .|+.+|.++.++..+.++.- +.... |. +.+ ++| .+||+|-++..+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESL-PLATATFDLAWSNLAVQW 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccC-cCCCCcEEEEEECchhhh
Confidence 4467899999999999999987653 56677887789998888753 11111 21 333 344 79999988655432
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
--+...+|.|+-|+|||||.++++.
T Consensus 116 ---~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 116 ---CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ---cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 2356899999999999999999984
No 136
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.47 E-value=1e-07 Score=84.72 Aligned_cols=98 Identities=26% Similarity=0.354 Sum_probs=71.0
Q ss_pred cceEeeecccchhhhhhhcC--CCeEEEEecCCCCCccchHHHHhhc----c---cchhh-ccccccCCCCCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVD--DPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~--~~v~~mnv~~~~~~~~~l~~~~eRg----l---i~~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
..+|||+|||.|.++.+|++ ... .|+.+|.++.+++.+.++- + |..++ |+ +.....+..||+|.+.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 35799999999999999998 444 4566677778888888775 2 33333 33 2224455679999998
Q ss_pred cccc--cCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 547 SIFS--LYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ~~fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+ |+ .+-+..+...+|-++.+.|||||+++|++
T Consensus 78 ~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 G-FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp S-GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 43 22222456788999999999999999975
No 137
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=1.1e-06 Score=97.49 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=77.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCC--C
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP--Y 278 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lp--f 278 (636)
.+...+...++. +|||+|||+|..+..++++. ..++++ |+++.+++.++++ +..+.+...|...++ +
T Consensus 235 ~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~---D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 235 LAATLLAPQNGE--RVLDACAAPGGKTAHILELAPQAQVVAL---DIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 444555555555 99999999999999999873 456666 8899888877644 455677777776654 3
Q ss_pred CCCCeeEEEecc----c--cc-----ccccCh----------HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSR----C--LI-----PWGQYD----------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~----~--L~-----h~~~d~----------~~~L~el~RvLKPGG~Liis~p 321 (636)
..++||.|++.. . +. .|...+ ..++..+.++|||||++++++.
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 457899999422 1 10 121111 3689999999999999999974
No 138
>PLN02244 tocopherol O-methyltransferase
Probab=98.46 E-value=3.1e-07 Score=98.95 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=67.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccc---hhh-ccccccCCCC-Cccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIG---TYQ-NWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~---~~~-~~ce~~~~yp-~t~Dl~H~~ 546 (636)
...+|||+|||.|+++.+|+++- ..+|+.+|.++.++..+.+ +|+.. ... |.. . .++| .+||+|.+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~-~~~~~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-N-QPFEDGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-c-CCCCCCCccEEEEC
Confidence 45789999999999999998751 2355566666667765544 35522 111 222 1 2355 899999986
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..+.... +...+|.||-|+|||||.++|.+
T Consensus 194 ~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 6554333 46889999999999999999964
No 139
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.45 E-value=1.7e-07 Score=95.90 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc------cchhhc
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IGTYQN 528 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------i~~~~~ 528 (636)
+.|++.+..... + .....|||++||+|-++..|++.-----.|+.+|-+++||.++.+|-- |-....
T Consensus 33 ~~wr~~~~~~~~----~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLLG----L---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHHT---------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhccC----C---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 678876653221 2 335699999999999998887641112367777888899999998743 222222
Q ss_pred cccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 529 WCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 529 ~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
=.|.+ +|| .+||.|=+...+-. -.+.+..|-||-|||||||.++|-|
T Consensus 106 da~~l-p~~d~sfD~v~~~fglrn---~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDL-PFPDNSFDAVTCSFGLRN---FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG----SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHh-cCCCCceeEEEHHhhHHh---hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 22444 365 99999876444432 3567899999999999999999865
No 140
>PHA03411 putative methyltransferase; Provisional
Probab=98.44 E-value=1.4e-06 Score=90.62 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=73.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+|||+|||+|.++..++.+ +..++.+ |+++.+++.++++...+.+...|...+. ..++||+|+++..+.+...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gV---Disp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCV---ELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCc
Confidence 48999999999999888775 3455666 8899999999887666788888877654 3468999999887755432
Q ss_pred Ch-------------------HHHHHHHHhcccCCcEEEEE
Q 006662 298 YD-------------------GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 298 d~-------------------~~~L~el~RvLKPGG~Liis 319 (636)
.. ..++..+.++|+|+|.+++.
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 21 24667778899999987776
No 141
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.44 E-value=1e-06 Score=94.23 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=73.7
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
....+.+.+...++. +|||||||+|.++..+++.. ..++++ |+++.+++.|+++ +. ++.+..+|...
T Consensus 68 l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgV---Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 68 LMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSV---EYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 334555555555555 89999999999999998752 235556 7888888777643 33 46677777665
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.+.....||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 143 ~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 5545568999998765522 2345678999999998864
No 142
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.42 E-value=1.2e-06 Score=87.04 Aligned_cols=150 Identities=13% Similarity=0.163 Sum_probs=93.0
Q ss_pred ccCcchhcchh--hHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh
Q 006662 442 VDGVTAEMFRE--DTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE 519 (636)
Q Consensus 442 ~~~~~~~~f~~--d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e 519 (636)
.+|++.+.|.. +...|++.|+.-. +..+.. .....|||+|||.|.++..++..---.-.|+.+|.++.++..+.+
T Consensus 7 ~~~~~d~~~~~~~~~~~t~~~~r~~~--l~~l~~-~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~ 83 (198)
T PRK00377 7 IPGIPDEEFERDEEIPMTKEEIRALA--LSKLRL-RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR 83 (198)
T ss_pred CCCCChHHHccCCCCCCCHHHHHHHH--HHHcCC-CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 45677777775 3457777775221 222333 346689999999999988764420001245556666667776544
Q ss_pred h----cccc---hhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHH
Q 006662 520 R----GLIG---TYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSI 590 (636)
Q Consensus 520 R----gli~---~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~ 590 (636)
+ |+.. ++. |..+.....+..||+|.+.+ ....++.+|-++.|+|+|||.+++. -..+.+.++.+.
T Consensus 84 n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (198)
T PRK00377 84 NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSA 157 (198)
T ss_pred HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHH
Confidence 3 4311 111 22222222346799877632 2245788999999999999999983 355677788888
Q ss_pred HhcCCCceEE
Q 006662 591 TDGMEWEGRI 600 (636)
Q Consensus 591 ~~~~~W~~~~ 600 (636)
++.+.++..+
T Consensus 158 l~~~g~~~~~ 167 (198)
T PRK00377 158 LENIGFNLEI 167 (198)
T ss_pred HHHcCCCeEE
Confidence 8777776553
No 143
>PRK00811 spermidine synthase; Provisional
Probab=98.41 E-value=3.3e-06 Score=88.77 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc----------CCCeEEEEecccc-CCCCCCCee
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER----------GVPALIGVMASIR-LPYPSRAFD 284 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er----------g~~~~~~~~d~~~-Lpf~~~sFD 284 (636)
.+++||+||||.|..+.+++++ ++ .++.+ |+++.+++.|++. ...+.+...|... +....++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~V---Eid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLV---EIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEE---eCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3458999999999999999887 33 33344 7888888888753 2245677777544 233467899
Q ss_pred EEEecccccccccCh----HHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~ 320 (636)
+|++...- ++.... ..+++.+.+.|+|||.+++..
T Consensus 153 vIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99985432 332221 578899999999999999864
No 144
>PRK04457 spermidine synthase; Provisional
Probab=98.40 E-value=5e-06 Score=86.48 Aligned_cols=112 Identities=8% Similarity=0.102 Sum_probs=74.5
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC------CCeEEEEeccc
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG------VPALIGVMASI 274 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg------~~~~~~~~d~~ 274 (636)
.|.+.+...+... ..+++|||||||+|.++.++++. +..++.+ |+++++++.|++.. ..+.+...|..
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~V---Eidp~vi~~A~~~f~~~~~~~rv~v~~~Da~ 127 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAV---EINPQVIAVARNHFELPENGERFEVIEADGA 127 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHHHcCCCCCCCceEEEECCHH
Confidence 3444443333222 23458999999999999999876 3344444 88889999887652 24667777754
Q ss_pred c-CCCCCCCeeEEEecccccc--ccc--ChHHHHHHHHhcccCCcEEEEE
Q 006662 275 R-LPYPSRAFDMAHCSRCLIP--WGQ--YDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 275 ~-Lpf~~~sFDlV~~s~~L~h--~~~--d~~~~L~el~RvLKPGG~Liis 319 (636)
. +.-..++||+|++.. +.. ... ....+++++.++|+|||.+++.
T Consensus 128 ~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 128 EYIAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3 222246899999742 211 111 1268999999999999999996
No 145
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.40 E-value=4.3e-07 Score=94.60 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=68.9
Q ss_pred CcceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhhcc-cchhh-ccccccCCCC-Cccceeeeccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
...+|||+|||.|.++..|.+. + .-..+|+.+|.++.++..+.++.- +.... |. +. .+++ .+||+|.+ +|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~-lp~~~~sfD~I~~--~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HR-LPFADQSLDAIIR--IYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-cc-CCCcCCceeEEEE--ecC
Confidence 3567999999999999988754 1 111367888988899999887742 11111 11 12 2455 79999986 232
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHH
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSI 590 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~ 590 (636)
+..+-|+.|+|+|||++|+.... ..+..++++
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 33468999999999999997543 234444443
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.39 E-value=2.5e-06 Score=94.69 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=75.8
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----CCCeEE--EEeccccC
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALI--GVMASIRL 276 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g~~~~~--~~~d~~~L 276 (636)
...+...+...++. +|||+|||+|..+..+++. +..++++ |+++.+++.++++ +..+.+ ..++....
T Consensus 227 s~~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~~~~v~a~---D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 227 AQWVATWLAPQNEE--TILDACAAPGGKTTHILELAPQAQVVAL---DIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred HHHHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcCCCeEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 34555666555555 9999999999999999876 2455555 8888888777544 444333 44444433
Q ss_pred CC--CCCCeeEEEe----c--cccccccc-----C----------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 PY--PSRAFDMAHC----S--RCLIPWGQ-----Y----------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 pf--~~~sFDlV~~----s--~~L~h~~~-----d----------~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ +.++||.|++ + .++.+.++ . ...+|.++.++|||||++++++.
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 43 4678999995 2 22322111 1 24789999999999999999975
No 147
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.38 E-value=5.5e-07 Score=96.34 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=65.4
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHH--HHhhcc-----cchhhccccccCCCCCccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV--IYERGL-----IGTYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~--~~eRgl-----i~~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+.|||+|||.|.++.+|++.+- -.|+.+|.+..++.. +..+.+ +-+...=.+.++. +.+||+|+|.++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 357999999999999999987642 125666666444432 111211 1111100123333 789999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+. ++-+...+|.++-|+|||||.+||.
T Consensus 199 l~---H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 199 LY---HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hh---ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 64 3446789999999999999999986
No 148
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.37 E-value=2.2e-06 Score=84.15 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=78.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhcccc-ccCCCCCccceeeeccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCE-AMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce-~~~~yp~t~Dl~H~~~~fs 550 (636)
...+|||+|||.|.++.++++.. --.+|+.+|.++.++..+.++ |+ .-+.-.+. ....++..||+|.+++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEECCCc-
Confidence 36689999999999998887641 013455566665667666542 33 11111111 223456789999886532
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCce
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~ 598 (636)
..++.++.++-|+|+|||++++.+ ..+...++.+++++..++.
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 357889999999999999999976 4566677888888877753
No 149
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.37 E-value=1.4e-06 Score=87.88 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=66.5
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
..+|||+|||.|.++..|.+. +- .+|+.+|.+++++..+.++ ++ +.+++.=.+.+ ++| .+||+|++..
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGF 122 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEec
Confidence 578999999999999988764 11 2455566666777666554 22 12222111222 345 7999999876
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+.... +...+|-|+-|+|||||++++.+.
T Consensus 123 ~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 123 GLRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 654333 457899999999999999998753
No 150
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.37 E-value=4.7e-07 Score=89.83 Aligned_cols=96 Identities=15% Similarity=0.230 Sum_probs=67.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccc-cCCCCCccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEA-MSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~-~~~yp~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||+|.++.+|++++ ..|..+|.++.++..+.+ .|+ .+....++. -..++.+||+|.+..+|..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEeccccc
Confidence 3589999999999999999875 367777887778876543 344 111111111 1124578999999887754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.. .-+++.++-++.|+|+|||++++
T Consensus 107 ~~-~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ-AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 32 23678999999999999999555
No 151
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.35 E-value=6e-07 Score=89.25 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=67.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH----hhcccc---hhhccccccCCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLIG---TYQNWCEAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgli~---~~~~~ce~~~~yp~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++.+|++++. +|..+|.++.++..+. ++|+-. ...|+.+ + +++.+||+|-+..+|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecch
Confidence 35899999999999999998853 6667777767776544 334411 1123221 1 246789999998776
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
-.. +.-+.+.++-+|.|+|||||++++
T Consensus 106 ~~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 432 334578999999999999999655
No 152
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.35 E-value=6.3e-07 Score=98.07 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=71.8
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcccch-hhccccccCCCCCccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGT-YQNWCEAMSTYPRTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgli~~-~~~~ce~~~~yp~t~Dl~H~~~~fs~~~ 553 (636)
....|||+|||.|+++..|++. ++ .|+.+|.++.++..+.+|.- +. +.-.+..+...+.+||+|.+.++|..-.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 3568999999999999999875 43 56777777789988888641 10 1111222233367899999988876432
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.-..+.++-++.|+|+|||++++.+
T Consensus 243 -~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 243 -PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2346789999999999999999964
No 153
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.35 E-value=7.4e-07 Score=93.18 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=73.5
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHcC-----------CCeEEEEecc------ccCCCCCC
Q 006662 220 RTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALERG-----------VPALIGVMAS------IRLPYPSR 281 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~erg-----------~~~~~~~~d~------~~Lpf~~~ 281 (636)
..+||+|||-|.-+....+.++. .+++ |+.+..++.|++|. .++.|..+|. ..+++++.
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igi---DIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGI---DIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEee---ehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 37999999999888777776542 3344 77777777776552 2466777764 23455666
Q ss_pred CeeEEEecccccccccCh---HHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|-|-+++|.-.... ..+|+++.+.|||||+||-+.|
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 799999999995443333 5789999999999999999988
No 154
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.34 E-value=1.2e-05 Score=79.00 Aligned_cols=104 Identities=13% Similarity=0.007 Sum_probs=74.7
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc----C-CCeEEEEeccccCCCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYP 279 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er----g-~~~~~~~~d~~~Lpf~ 279 (636)
.....|...+++ +++|||||+|+.+..++.. ...++.+ |-++++++..+++ + .++.+..+++...--.
T Consensus 25 l~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AI---e~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 25 LTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAI---ERDEEALELIERNAARFGVDNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEE---ecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC
Confidence 345555666666 9999999999999999943 4566677 6677777665433 3 3466766665433112
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..+||.|+..... ..+.+++.+...|||||.+++..
T Consensus 100 ~~~~daiFIGGg~-----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 100 LPSPDAIFIGGGG-----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCCCEEEECCCC-----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 2279999987753 44689999999999999999984
No 155
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.34 E-value=1.1e-06 Score=93.62 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHH-Hhhcccc---hhhccc
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI-YERGLIG---TYQNWC 530 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~eRgli~---~~~~~c 530 (636)
..|...+. |..++..++. ...++|||+|||.|.++.+|+..+. -.|+.+|.+..++..+ .-|.+++ -.+-..
T Consensus 102 ~e~~s~~~-~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 102 SEWRSDIK-WDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred HHHHHHHH-HHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 35665554 3344544444 4468999999999999998887753 2456667665555432 1111111 111111
Q ss_pred cccCCC--CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 531 EAMSTY--PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 531 e~~~~y--p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
..+... +.+||+|-|.+++-. +-+...+|.|+.|+|||||.+|+.
T Consensus 178 ~~ie~lp~~~~FD~V~s~gvL~H---~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 LGIEQLHELYAFDTVFSMGVLYH---RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCHHHCCCCCCcCEEEEcchhhc---cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 112222 358999999887743 346789999999999999999986
No 156
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.34 E-value=5.5e-05 Score=81.71 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=81.6
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh----hcccchhhccccccCCCCCccceeeeccccccC-
Q 006662 479 NLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY- 552 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~- 552 (636)
.|||+|||.|.++.++.++ +- ..|+.+|.+...+..+.+ .|+-+.+ .+...++..+..||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~-~~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEV-FASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEE-EEcccccccCCCccEEEECCCccCCc
Confidence 6999999999999999875 32 235556666566665543 3442222 2333444446899999998766321
Q ss_pred -CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 553 -KDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 553 -~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
.+.-..+.++.++-|.|+|||.++|--+. .+-..+++..... ++.. ++ ++-||+-++|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEcc
Confidence 11223578999999999999999886432 2344555555432 2222 11 35678877763
No 157
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.33 E-value=8.5e-07 Score=93.24 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=79.4
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH----hhcccchhhccccccCC--CCCccceeeecccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMST--YPRTYDLIHADSIFSL 551 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgli~~~~~~ce~~~~--yp~t~Dl~H~~~~fs~ 551 (636)
.+|||+|||.|.++.+|++.+. .|+.+|.++.++..+. +.|+ . ++--+..+.. .+..||+|-+..+|..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhh
Confidence 3899999999999999998764 5677787767776653 3455 1 1111222222 2689999999887754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe---CH--------H---HHHHHHHHHhcCCCceEEe
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRD---DV--------D---ILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~--------~---~~~~~~~~~~~~~W~~~~~ 601 (636)
. ++-+++.++-+|.|+|+|||++++-. .. . .-..++++.+. |++..+
T Consensus 197 l-~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 L-NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 3 33467899999999999999966531 11 1 23556777766 888755
No 158
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.32 E-value=4.2e-06 Score=93.13 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=77.7
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP 277 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp 277 (636)
..+...+...++. +|||+|||+|..+..+++. ...++++ |+++.+++.++++ |. ++.+...|...++
T Consensus 242 ~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~---D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~ 316 (434)
T PRK14901 242 QLVAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAV---DRSASRLKKLQENAQRLGLKSIKILAADSRNLL 316 (434)
T ss_pred HHHHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEE---cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc
Confidence 3444555555555 8999999999999999876 2345555 8888888777543 43 4677777877665
Q ss_pred ----CCCCCeeEEEec------ccccccccC----------------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ----YPSRAFDMAHCS------RCLIPWGQY----------------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ----f~~~sFDlV~~s------~~L~h~~~d----------------~~~~L~el~RvLKPGG~Liis~p 321 (636)
+..++||.|++. .++.+. ++ ...+|.++.++|||||++++++.
T Consensus 317 ~~~~~~~~~fD~Vl~DaPCSg~G~~~r~-p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 317 ELKPQWRGYFDRILLDAPCSGLGTLHRH-PDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred cccccccccCCEEEEeCCCCcccccccC-cchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 446789999952 222111 11 24789999999999999999864
No 159
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.32 E-value=5e-07 Score=90.82 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=68.1
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----ccc---chhh-ccccccCCCCCccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli---~~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
+.|||+|||.|+++..+++. +- .+|..+|.+++++..+.++ |+- ..+. |..+ .++|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~--~~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK--DPFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc--CCCCCCCCEeehHHH
Confidence 36999999999999988764 11 2445556666777766654 442 2222 2211 135689999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
|.... +.+.+|-++.|+|+|||++++.+.
T Consensus 77 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76543 468999999999999999999864
No 160
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.32 E-value=1.4e-06 Score=85.69 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHH----hhcc--cchhh
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQ 527 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgl--i~~~~ 527 (636)
+.|++++-.-..++..+. ..+|||+|||+|.++..|+.. +- ..|+.+|.++.++.++. +.|+ +-+++
T Consensus 25 ~~~~~~~~d~i~~~~~~~----~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~ 98 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD----GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVN 98 (181)
T ss_pred HHHHHHHHHHHHHHHhcC----CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe
Confidence 467776643222233332 468999999999888876532 11 34566677766665543 3354 23333
Q ss_pred ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC-CceEE
Q 006662 528 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME-WEGRI 600 (636)
Q Consensus 528 ~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~-W~~~~ 600 (636)
.=.+.+ ....+||+|-+++ + ..+++++-++.|+|||||.+++.........+..+.+.++ |....
T Consensus 99 ~d~~~~-~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 99 GRAEDF-QHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred cchhhc-cccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence 111222 2347999998855 1 3578899999999999999999987766677777665533 44443
No 161
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1e-05 Score=82.81 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=79.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHcC----C--CeEEEEeccccCC
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG----V--PALIGVMASIRLP 277 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~erg----~--~~~~~~~d~~~Lp 277 (636)
.|...+.+.+|+ +|||.|.|+|.++.+|+.. .-.++++ ++.+...+.|+++- . .+.+...|..+.-
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~ty---E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTY---EIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEE---EecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 456667778887 9999999999999999964 2345556 77888888887652 1 2566666765554
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++ .||+|+. .. ++|..++..+.++|+|||.+++-.|
T Consensus 160 ~~~-~vDav~L-----Dm-p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 160 DEE-DVDAVFL-----DL-PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred ccc-ccCEEEE-----cC-CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 554 8999986 33 4888999999999999999999877
No 162
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.30 E-value=4.5e-07 Score=93.49 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=72.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccc---hhhccccccCCC-CCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG---TYQNWCEAMSTY-PRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~---~~~~~ce~~~~y-p~t~Dl~H~~~~ 548 (636)
-.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+.. +++.-.+.+..+ +.+||+|.+.++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 46999999999999999998853 667778887888887765 4322 221111223334 489999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|.... +...+|-++-|+|||||.+++..
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 87543 44789999999999999998863
No 163
>PHA03412 putative methyltransferase; Provisional
Probab=98.29 E-value=4.5e-06 Score=85.13 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=67.7
Q ss_pred cEEEEeCCCCcHHHHHHhhc-----CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
.+|||+|||+|.++..++++ ...++.+ |+++.+++.|+++...+.+...|....++ +++||+|+++--+..
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aV---EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCV---ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEE---ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCC
Confidence 48999999999999988864 2344444 88999999998876667888888766554 468999999875532
Q ss_pred ccc----------C-hHHHHHHHHhcccCCcE
Q 006662 295 WGQ----------Y-DGLYLIEVDRVLRPGGY 315 (636)
Q Consensus 295 ~~~----------d-~~~~L~el~RvLKPGG~ 315 (636)
... . ...++..+.+++++|+.
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 210 1 13578888887777775
No 164
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.29 E-value=3.1e-06 Score=94.48 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=73.4
Q ss_pred HhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCC
Q 006662 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSR 281 (636)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~ 281 (636)
.++...++. +|||+|||+|..+..+++. +..++++ |+++.+++.++++ +. ++.+...|...++ +++
T Consensus 244 ~~l~~~~g~--~VLDlgaG~G~kt~~la~~~~~~~~V~av---D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~ 317 (445)
T PRK14904 244 LLLNPQPGS--TVLDLCAAPGGKSTFMAELMQNRGQITAV---DRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEE 317 (445)
T ss_pred HhcCCCCCC--EEEEECCCCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCC
Confidence 344444444 8999999999998888764 3355566 8898888777543 44 3677777776654 557
Q ss_pred CeeEEEe----ccc--cc-----ccccC----------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHC----SRC--LI-----PWGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~----s~~--L~-----h~~~d----------~~~~L~el~RvLKPGG~Liis~p 321 (636)
+||+|++ +.. +. .|... ...+|.++.++|||||++++++.
T Consensus 318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 8999995 211 10 11111 13589999999999999999975
No 165
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.28 E-value=7.3e-07 Score=89.40 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=103.5
Q ss_pred hccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccC--CCCCccceeee
Q 006662 469 YQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMS--TYPRTYDLIHA 545 (636)
Q Consensus 469 ~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~--~yp~t~Dl~H~ 545 (636)
..... +..|.+||+|||+|-+|-+|.++ +--+..+|.+.|||..+.|+|++-++. .=...|+ .=++-||||-+
T Consensus 119 ~~~~~-g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 119 GKADL-GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred HhccC-CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh
Confidence 33455 66999999999999999999775 223466789999999999999976443 2123466 34789999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCceEEe-----ccC
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------------DILVKIKSITDGMEWEGRIA-----DHE 604 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~-----~~e 604 (636)
.-||+... .++.+|.-.++.|.|||.|+|+... .--..|..+.++-.-++..+ -.+
T Consensus 195 aDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 195 ADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred hhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 89988654 4599999999999999999998210 02245666666666665422 123
Q ss_pred CCCCCcceEEEEEec
Q 006662 605 NGPRQREKILFANKK 619 (636)
Q Consensus 605 ~~~~~~~~~l~~~K~ 619 (636)
.|.-.+..+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 333356777777775
No 166
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.27 E-value=1.1e-06 Score=93.93 Aligned_cols=97 Identities=12% Similarity=0.198 Sum_probs=72.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----ccchhhccc---cccCCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWC---EAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----li~~~~~~c---e~~~~yp~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++..|+..+. +|..+|.+..++.++.++. +..-+.-.| +.+...+++||+|=|.+++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 45899999999999999987653 6778888888999888662 211111122 3333234799999997777
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.... +.+.+|-|+-|+|||||.++|.+
T Consensus 209 eHv~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 209 EHVA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 6444 56899999999999999999985
No 167
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.26 E-value=6.7e-06 Score=91.44 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP- 277 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp- 277 (636)
.+..++...++. +|||+|||+|..+.++++. +..++++ |+++.+++.++++ +. .+.+...|...++
T Consensus 228 ~~~~~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~---Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 228 IVPLLMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAV---DISREKIQLVEKHAKRLKLSSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh
Confidence 344445545555 8999999999999988875 3455566 8899998887644 43 3567777877665
Q ss_pred CCCCCeeEEEecc-c--ccccccC------------------hHHHHHHHHhcccCCcEEEEEeCC
Q 006662 278 YPSRAFDMAHCSR-C--LIPWGQY------------------DGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 278 f~~~sFDlV~~s~-~--L~h~~~d------------------~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
+..++||.|++.. | +..+..+ ...+|.++.+.|||||++++++..
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 4567899999621 1 1011111 145688999999999999999753
No 168
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.26 E-value=1.7e-06 Score=89.00 Aligned_cols=125 Identities=14% Similarity=0.213 Sum_probs=82.2
Q ss_pred hhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCC--CCCccceee
Q 006662 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMST--YPRTYDLIH 544 (636)
Q Consensus 468 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~--yp~t~Dl~H 544 (636)
+..+.. ....+|||+|||.|.++..|++.. =.-+|+.+|.++.++..+.++-- +.+.. ..+.. .+.+||+|+
T Consensus 24 l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 24 LARVPL-ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVE---ADIASWQPPQALDLIF 98 (258)
T ss_pred HhhCCC-cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEE---CchhccCCCCCccEEE
Confidence 333444 446899999999999999987651 01356777777788888876621 11211 11112 237999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC--H--HHHHHHHHHHhcCCCceEE
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD--V--DILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~~~~~~~~~~~~~~W~~~~ 600 (636)
++..|.... +...+|.++-|+|||||.+++.-. . .....+++++....|....
T Consensus 99 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 155 (258)
T PRK01683 99 ANASLQWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNL 155 (258)
T ss_pred EccChhhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHh
Confidence 988775433 467899999999999999999631 1 1223455666666665543
No 169
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.24 E-value=2.6e-06 Score=89.71 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=79.3
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhhccccccCCC-CCccceeeeccccccC
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQNWCEAMSTY-PRTYDLIHADSIFSLY 552 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~~~ce~~~~y-p~t~Dl~H~~~~fs~~ 552 (636)
.+|||+|||.|.++.++++.+. -.|+.+|.++.++..+.++.- -......+.....+ +..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 6899999999999888877653 356777877778877766532 11122222223333 47899999965432
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEe
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 601 (636)
.+..++-++-|+|||||+++++.- .+....+.+.+++. |+....
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 245789999999999999999864 34556677766665 766543
No 170
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.24 E-value=3.6e-06 Score=87.59 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=73.0
Q ss_pred hhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCC
Q 006662 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRA 282 (636)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~s 282 (636)
.+...++. +|||+|||+|..+..+++. ...++++ |+++.+++.++++ +. ++.+...|...++...+.
T Consensus 66 ~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~---D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 140 (264)
T TIGR00446 66 ALEPDPPE--RVLDMAAAPGGKTTQISALMKNEGAIVAN---EFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPK 140 (264)
T ss_pred HhCCCCcC--EEEEECCCchHHHHHHHHHcCCCCEEEEE---cCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccC
Confidence 34444554 8999999999999998875 2345555 8898888777543 33 456777776666555567
Q ss_pred eeEEEec----c--cccc-------ccc--------ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCS----R--CLIP-------WGQ--------YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s----~--~L~h-------~~~--------d~~~~L~el~RvLKPGG~Liis~p 321 (636)
||.|++. . ++.+ +.+ ....+|.++.++|||||+++.++.
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9999962 1 1100 110 113589999999999999999975
No 171
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.24 E-value=7.7e-06 Score=91.22 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
++..++.+.+.+...++. +|||+|||+|.++..|++....++++ |+++.+++.|+++ +. ++.+..+|...
T Consensus 282 ~e~l~~~vl~~l~~~~~~--~VLDlgcGtG~~sl~la~~~~~V~gv---D~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 282 NQKMVARALEWLDPQPGD--RVLDLFCGLGNFTLPLARQAAEVVGV---EGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHhcCCCCC--EEEEEeccCCHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 455666666666554544 89999999999999999987666677 8999999888754 33 47788887643
Q ss_pred ----CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 ----LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 ----Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++.+++||+|++..-. . .....+..+.+ ++|++.++++..
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr---~-g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPR---A-GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCC---c-ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 33556789999986533 2 12345555555 699999999954
No 172
>PRK01581 speE spermidine synthase; Validated
Probab=98.24 E-value=7.5e-06 Score=88.36 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc------------CCCeEEEEecccc-CCCCCC
Q 006662 217 GSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER------------GVPALIGVMASIR-LPYPSR 281 (636)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er------------g~~~~~~~~d~~~-Lpf~~~ 281 (636)
..+++||+||||+|..+..+++.. ..++.+ |+++++++.|++. ...+.+...|... +.-..+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~V---EIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLV---DLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEE---eCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 345699999999999999888863 233333 8889999998851 2356777777654 334457
Q ss_pred CeeEEEeccccccccc-----ChHHHHHHHHhcccCCcEEEEEe
Q 006662 282 AFDMAHCSRCLIPWGQ-----YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~-----d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.||+|++... .+... ....+++.+.+.|+|||.+++..
T Consensus 226 ~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 226 LYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 8999998632 12110 11568999999999999998874
No 173
>PRK08317 hypothetical protein; Provisional
Probab=98.23 E-value=2.3e-06 Score=85.58 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=70.7
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh--cccchhhccccccC--CCC-Cccceeeecccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER--GLIGTYQNWCEAMS--TYP-RTYDLIHADSIF 549 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR--gli~~~~~~ce~~~--~yp-~t~Dl~H~~~~f 549 (636)
....+|||+|||.|.++..+++.--=.-+++.+|.++.++..+.++ +.....+-.+..+. .++ .+||+||+..+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 3467899999999999998876410012566667777788888877 22111111111111 244 799999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.... +.+.++-++-|+|+|||++++.+
T Consensus 98 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 6544 46889999999999999999864
No 174
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.22 E-value=5e-06 Score=81.02 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=83.5
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCCCccceeeecccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~ 551 (636)
.+|||+|||.|.++..+.+..- .|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+.+||+|-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 4699999999999999988753 566777776777766553 22 12222 3322 23579999988655421
Q ss_pred CC------------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCCceEEeccC
Q 006662 552 YK------------------DRCEMEDVLLEMDRILRPEGSVIIRDDVDI-LVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 552 ~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~~e 604 (636)
.. .+..++.+|-++.|+|+|||.+++.+.... ...+.+.++...++.++....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe
Confidence 11 122367899999999999999999865544 667777888888888765433
No 175
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.21 E-value=7.6e-06 Score=81.51 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=67.1
Q ss_pred EEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHH----HcC-CCeEEEEecccc-CC--CCCCCeeEEEecc
Q 006662 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERG-VPALIGVMASIR-LP--YPSRAFDMAHCSR 290 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~----erg-~~~~~~~~d~~~-Lp--f~~~sFDlV~~s~ 290 (636)
.+||||||.|.+...+|.. +...+++ |+....+..+. +.+ .++.+..+|+.. ++ ++++++|.|+.++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGi---E~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGI---EIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEE---ES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEE---ecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 8999999999999999987 4555566 66666655543 233 468888888765 32 5679999999866
Q ss_pred cccccccCh--------HHHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~~d~--------~~~L~el~RvLKPGG~Liis~ 320 (636)
.= +|.... ..++..+.++|+|||.+.+.+
T Consensus 97 PD-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 97 PD-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 44 565322 479999999999999999984
No 176
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=3.4e-05 Score=81.11 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=66.6
Q ss_pred EEEEeCCCCcHHHHHHhhcCC--EEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v--~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
+|||+|||+|..+..++.... .++++ |+|+.+++.|+++ +. ++.+...+. -.+. .+.||+|+||--..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~---Dis~~Al~~A~~Na~~~~l~~~~~~~~dl-f~~~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAV---DISPDALALARENAERNGLVRVLVVQSDL-FEPL-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEE---ECCHHHHHHHHHHHHHcCCccEEEEeeec-cccc-CCceeEEEeCCCCC
Confidence 799999999999999999854 55666 9999999888755 32 222332221 1122 24899999976443
Q ss_pred ccc----------cCh--------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PWG----------QYD--------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~~----------~d~--------------~~~L~el~RvLKPGG~Liis~p 321 (636)
+-. .+| ..++.++.+.|+|||.+++..-
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 332 011 2578889999999999999843
No 177
>PRK05785 hypothetical protein; Provisional
Probab=98.20 E-value=3e-06 Score=86.20 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccC
Q 006662 455 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS 534 (636)
Q Consensus 455 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~ 534 (636)
..|++.+..... ..+.. ..+|||+|||+|-++.+|.+.. --+|+.+|.+++++..+.+++ ..++.-.+.+
T Consensus 35 ~~wr~~~~~~l~--~~~~~---~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l- 104 (226)
T PRK05785 35 VRWRAELVKTIL--KYCGR---PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEAL- 104 (226)
T ss_pred HHHHHHHHHHHH--HhcCC---CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhC-
Confidence 568776543221 11222 4689999999999999998772 237888999999999998874 2233333444
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCc
Q 006662 535 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEG 573 (636)
Q Consensus 535 ~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG 573 (636)
+|| .+||+|-+...+- +--+.+..|-||.|||||.+
T Consensus 105 p~~d~sfD~v~~~~~l~---~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFALH---ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChhh---ccCCHHHHHHHHHHHhcCce
Confidence 455 8999999855442 34577999999999999954
No 178
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.19 E-value=4.9e-06 Score=92.77 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=75.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP 277 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp 277 (636)
..+...+...++. +|||+|||+|..+..+++. ...++.+ |+++.+++.++++ +. ++.+...|...++
T Consensus 240 ~lv~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~av---Di~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~ 314 (444)
T PRK14902 240 MLVAPALDPKGGD--TVLDACAAPGGKTTHIAELLKNTGKVVAL---DIHEHKLKLIEENAKRLGLTNIETKALDARKVH 314 (444)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence 3455555555554 8999999999999999875 3455556 8888888777643 33 3677777776553
Q ss_pred --CCCCCeeEEEeccc------ccc-----cccC----------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 --YPSRAFDMAHCSRC------LIP-----WGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 --f~~~sFDlV~~s~~------L~h-----~~~d----------~~~~L~el~RvLKPGG~Liis~p 321 (636)
++ ++||+|++..- +.+ |... ...++.++.++|||||.+++++.
T Consensus 315 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 315 EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 33 78999997421 100 1111 13579999999999999998864
No 179
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.19 E-value=1.8e-05 Score=82.57 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=66.7
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC-C-EEEEcCcCCchHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN-I-LAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDM 285 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~-v-~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~-Lpf~~~sFDl 285 (636)
.+++||+||||+|.++..+++.. . .++.+ |+++.+++.+++.. ..+.+...|... +....++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~v---eid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLV---DIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEE---eCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 34599999999999999988764 2 23333 77888887776532 234455545422 1222468999
Q ss_pred EEecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 286 AHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 286 V~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
|++.... +.... ...+++.+.++|+|||.+++..
T Consensus 149 Ii~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9986542 22211 2578899999999999999874
No 180
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.19 E-value=9.3e-06 Score=81.01 Aligned_cols=120 Identities=21% Similarity=0.286 Sum_probs=69.5
Q ss_pred HHHHHHHH-Hhhcc-CCCCCcEEEEeCCCCc----HHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc--------C
Q 006662 202 DAYIDDIG-KLINL-KDGSIRTAIDTGCGVA----SWGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------G 263 (636)
Q Consensus 202 ~~~id~L~-~lL~l-~~g~~r~VLDIGCGtG----~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er--------g 263 (636)
+.+.+.+. .++.. ..+...+|+..||++| +++..|.+. ...-+.|.+.|++..+++.|++- +
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~ 92 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG 92 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence 44444444 33322 2335568999999999 455555551 11123455559999999998631 0
Q ss_pred -------------------------CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEE
Q 006662 264 -------------------------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 264 -------------------------~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Li 317 (636)
..+.|...+....+.+.+.||+|+|-++|+++.+.. ..++..+.+.|+|||+|+
T Consensus 93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~ 172 (196)
T PF01739_consen 93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF 172 (196)
T ss_dssp S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred hHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE
Confidence 125667777666344567899999999998886544 789999999999999999
Q ss_pred EEeC
Q 006662 318 LSGP 321 (636)
Q Consensus 318 is~p 321 (636)
+...
T Consensus 173 lG~s 176 (196)
T PF01739_consen 173 LGHS 176 (196)
T ss_dssp E-TT
T ss_pred EecC
Confidence 9843
No 181
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.18 E-value=1.4e-06 Score=88.89 Aligned_cols=103 Identities=8% Similarity=0.113 Sum_probs=69.8
Q ss_pred cceEeeecccchhhhhhhcCCCeE-EEEecCCCCCccchHHHHhh----cccchhhccccccCCCC-Cccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLW-VMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~-~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
..+|||+|||.|.+...|+++-.. -.+++.+|.+++++..+.++ +...-++--+..+..+| ..+|++.+..++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 568999999999999888764100 13567777777888888765 22111111123444444 5689988877665
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.... -+...+|-++.|+|+|||.++++|.
T Consensus 134 ~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 134 FLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 4332 1357899999999999999999974
No 182
>PRK14968 putative methyltransferase; Provisional
Probab=98.14 E-value=7e-06 Score=79.64 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=87.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----c-----ccchhhccccccCCCC-Cccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----G-----LIGTYQNWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----g-----li~~~~~~ce~~~~yp-~t~Dl~H~~ 546 (636)
..+|||+|||.|.++..|++++ -+|..+|.++.++..+.++ | +.-..+|+.+ .++ ..||+|=++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEEC
Confidence 5689999999999999998874 4667777776777776432 2 2222334444 334 589998665
Q ss_pred cccccCC------------------CCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEeccCCCC
Q 006662 547 SIFSLYK------------------DRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGP 607 (636)
Q Consensus 547 ~~fs~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~ 607 (636)
.-|.... ....++.++-++.|+|+|||.+++-.. ......+.+++....|+......+.-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 5443210 122356789999999999999887533 223567778888888876644333333
Q ss_pred CCcceEEEEEe
Q 006662 608 RQREKILFANK 618 (636)
Q Consensus 608 ~~~~~~l~~~K 618 (636)
+..-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 33334444443
No 183
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.14 E-value=9.8e-06 Score=83.54 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=83.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC--CccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP--RTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp--~t~Dl~H~~~~fs~~~~ 554 (636)
..+|||+|||.|..+.++.+.+. -.|+.+|.++.++..+.++.-..-.. ..+.... .+||+|.|+-+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~~~~~~fD~Vvani~~----- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVE---LNVYLPQGDLKADVIVANILA----- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEccCCCCcCEEEEcCcH-----
Confidence 57899999999999888877653 23667777767777776652110000 1111111 279999885321
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
-.+..++-++.|+|||||++|+++-. +....+.+.++...+.......+ +.-..++++|+
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~~ 250 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKKK 250 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEeC
Confidence 12457888999999999999999743 45677788888888887654333 23445566653
No 184
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.14 E-value=1.9e-05 Score=84.22 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~L 276 (636)
+.+++.+.+++...++ .+|||+|||+|.++..+++.+..++++ |+++.+++.|+++ +. ++.+..+|...+
T Consensus 159 ~~l~~~v~~~l~~~~~--~~VLDl~cG~G~~sl~la~~~~~V~gv---D~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~ 233 (315)
T PRK03522 159 AQLYATARDWVRELPP--RSMWDLFCGVGGFGLHCATPGMQLTGI---EISAEAIACAKQSAAELGLTNVQFQALDSTQF 233 (315)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEccCCCCHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH
Confidence 3444445555543333 489999999999999999988777777 8899999887644 44 478888887665
Q ss_pred CC-CCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 277 PY-PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 277 pf-~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
.. ..+.||+|++..-. ..-...++ ++...++|++.++++..|
T Consensus 234 ~~~~~~~~D~Vv~dPPr---~G~~~~~~-~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 234 ATAQGEVPDLVLVNPPR---RGIGKELC-DYLSQMAPRFILYSSCNA 276 (315)
T ss_pred HHhcCCCCeEEEECCCC---CCccHHHH-HHHHHcCCCeEEEEECCc
Confidence 42 34579999987432 11112333 334447889988888543
No 185
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.14 E-value=1.5e-05 Score=81.31 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=71.6
Q ss_pred EEEEeCCCCcHHHHHHhhcC----CEEEEcCcCCchHHHHHHHHHcCC-CeEEEEeccccCC---CCCCCeeEEEecccc
Q 006662 221 TAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---YPSRAFDMAHCSRCL 292 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~----v~vv~i~p~Dis~a~l~~A~erg~-~~~~~~~d~~~Lp---f~~~sFDlV~~s~~L 292 (636)
.+||||||.|.+...+|+++ +.++++.. ..-..+++.+.+.++ ++.+...|+..+- +++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~-~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRV-PGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEeh-HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 79999999999999999983 34443322 112233444556678 8888888865542 455699999987754
Q ss_pred cccccCh--------HHHHHHHHhcccCCcEEEEEe
Q 006662 293 IPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 293 ~h~~~d~--------~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+... ..++..+.++|+|||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 776433 369999999999999999985
No 186
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.13 E-value=2.2e-06 Score=88.07 Aligned_cols=101 Identities=8% Similarity=0.130 Sum_probs=70.1
Q ss_pred cceEeeecccchhhhhhhcC---CCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVD---DPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+|||+|..+.+|++ .+- ..|+.+|.++.++..+.++ |+..-+.-.+..+...| ..||+|-++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45799999999999888765 232 3567778887899888776 33211211233444444 46898877655
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+.... .-+...++-|+.|+|+|||.+++.|.
T Consensus 135 l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 55433 23467899999999999999999873
No 187
>PRK03612 spermidine synthase; Provisional
Probab=98.13 E-value=2.5e-05 Score=88.92 Aligned_cols=99 Identities=14% Similarity=0.048 Sum_probs=71.8
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHc------------CCCeEEEEecccc-CCCCCCC
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER------------GVPALIGVMASIR-LPYPSRA 282 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~er------------g~~~~~~~~d~~~-Lpf~~~s 282 (636)
..++|||||||+|..+.+++++. ..++.+ |+++++++.++++ .+.+.+...|..+ +...+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~V---Eid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLV---DLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEE---ECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 34589999999999999998873 244444 8899999999872 1346677777654 2233568
Q ss_pred eeEEEecccccccccCh-----HHHHHHHHhcccCCcEEEEEe
Q 006662 283 FDMAHCSRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~-----~~~L~el~RvLKPGG~Liis~ 320 (636)
||+|++.... +..+.. ..+++.+.+.|||||.+++..
T Consensus 374 fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 374 FDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999996433 332211 468899999999999999875
No 188
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.12 E-value=4.8e-05 Score=76.11 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=75.4
Q ss_pred cccHHHHHHHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC-CeEEEE
Q 006662 198 PRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV-PALIGV 270 (636)
Q Consensus 198 ~~g~~~~id~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~ 270 (636)
....+...+.+.+.+.. ..+. +|||+|||+|.++..++.++ ..++.+ |.++.+++.++++ +. ++.+..
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~~--~vLDl~~GsG~l~l~~lsr~a~~V~~v---E~~~~a~~~a~~Nl~~~~~~~v~~~~ 108 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVDA--RCLDCFAGSGALGLEALSRYAAGATLL---EMDRAVAQQLIKNLATLKAGNARVVN 108 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCCC--EEEEcCCCccHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44556666666666532 3343 89999999999998765553 445555 7788887776543 32 466777
Q ss_pred ecccc-CCCCCCCeeEEEecccccccccC-hHHHHHHHHh--cccCCcEEEEEeC
Q 006662 271 MASIR-LPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDR--VLRPGGYWILSGP 321 (636)
Q Consensus 271 ~d~~~-Lpf~~~sFDlV~~s~~L~h~~~d-~~~~L~el~R--vLKPGG~Liis~p 321 (636)
.|... ++...++||+|++.--+ ... ...++..+.. +|+|+|.++++.+
T Consensus 109 ~D~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 109 TNALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred chHHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 77544 22234579999998743 222 2455555554 4899999999865
No 189
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.12 E-value=1.4e-05 Score=79.06 Aligned_cols=142 Identities=20% Similarity=0.307 Sum_probs=90.2
Q ss_pred ccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccc-cccCCC-C-Cccceeee
Q 006662 470 QLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWC-EAMSTY-P-RTYDLIHA 545 (636)
Q Consensus 470 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~c-e~~~~y-p-~t~Dl~H~ 545 (636)
.|.. .+++++|++|||.|-|-+.|+.+ .-.++.+|.+..-+..+.+|=- +.-| .|- ..++.+ | .+|||||+
T Consensus 38 aLp~-~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~-~~~~V~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 38 ALPR-RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLA-GLPHVEWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp HHTT-SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTT-T-SSEEEEES-TTT---SS-EEEEEE
T ss_pred hcCc-cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcC-CCCCeEEEECcCCCCCCCCCeeEEEE
Confidence 3666 89999999999999999999987 2345555665567777776532 2112 333 233333 5 99999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCCceEEeccCCCCCCcceEEE
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------ILVKIKSITDGMEWEGRIADHENGPRQREKILF 615 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~ 615 (636)
..|+-...+.-++..++-.+...|+|||.+|+-.-.+ --+.|.++++..-=++.-..-..++ ..|.-|+
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 191 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNEDCLL 191 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCceEe
Confidence 9999888777678889999999999999999964322 2255666655555455443333233 4566665
Q ss_pred EE
Q 006662 616 AN 617 (636)
Q Consensus 616 ~~ 617 (636)
++
T Consensus 192 ~~ 193 (201)
T PF05401_consen 192 AR 193 (201)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 190
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.11 E-value=4.4e-06 Score=83.40 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=83.8
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-C-CCccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-Y-PRTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-y-p~t~Dl~H~ 545 (636)
.-.+|||+|||.|.+...|++. +- .+|+.+|.++.++..+.++ |+ +-+++ |+.+.+.. + +.+||+|-+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3578999999999999998764 21 3566677776777777653 33 22233 33233432 5 488999876
Q ss_pred ccccc-----cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCceEE
Q 006662 546 DSIFS-----LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 546 ~~~fs-----~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 600 (636)
+.... ....+...+.+|-++.|+|+|||.++|. +.......+.+.+..-.|.+.+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 42221 1122234688999999999999999996 6667777888877777787764
No 191
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.08 E-value=5.2e-05 Score=79.03 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHH---HHHHc----C---------
Q 006662 202 DAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQ---FALER----G--------- 263 (636)
Q Consensus 202 ~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~---~A~er----g--------- 263 (636)
...++.|.+.++. ......+||--|||.|+++..++.+|..+.+. +.|--|+- +.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gn---E~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGN---EFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEE---EchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 3445556665542 22234589999999999999999998766555 66666542 22211 0
Q ss_pred -----------------------------CCeEEEEeccccCCCCC---CCeeEEEecccccccccChHHHHHHHHhccc
Q 006662 264 -----------------------------VPALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLR 311 (636)
Q Consensus 264 -----------------------------~~~~~~~~d~~~Lpf~~---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK 311 (636)
.......+|......++ ++||+|++.+.+ .-..+.-.++..+.++||
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLK 193 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhc
Confidence 01222333333333233 689999987655 555566889999999999
Q ss_pred CCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecccc
Q 006662 312 PGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK 362 (636)
Q Consensus 312 PGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~~ 362 (636)
|||++|=.+|-........ ......++-.++++..+++.++|+.+.+..
T Consensus 194 pgG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999988888332211110 122234666788999999999999876544
No 192
>PLN02366 spermidine synthase
Probab=98.07 E-value=1.6e-05 Score=84.69 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccC--CCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL--PYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~L--pf~~~sFDlV 286 (636)
+++||+||||.|..+.++++. .+. .++..|+++.+++.+++.. ..+.+...|.... ..+++.||+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~--~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVE--QIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 468999999999999999987 221 2222377778888876542 3466777775322 1235689999
Q ss_pred EecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
++-..- ++... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 984322 33221 1468999999999999998753
No 193
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.07 E-value=5.7e-05 Score=77.94 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=75.9
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL 276 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L 276 (636)
..|...+.+.+|+ +|||.|.|+|.++.+|++. .-.+.++ |.++...+.|+++ +. .+.+...|....
T Consensus 30 ~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~---E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 30 SYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTY---EFREDRAEKARKNFERHGLDDNVTVHHRDVCEE 104 (247)
T ss_dssp HHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEE---ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG
T ss_pred HHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEcc---ccCHHHHHHHHHHHHHcCCCCCceeEecceecc
Confidence 3566777888888 9999999999999999975 2356667 8899988888754 33 477888887654
Q ss_pred CCC---CCCeeEEEecccccccccChHHHHHHHHhcc-cCCcEEEEEeC
Q 006662 277 PYP---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVL-RPGGYWILSGP 321 (636)
Q Consensus 277 pf~---~~sFDlV~~s~~L~h~~~d~~~~L~el~RvL-KPGG~Liis~p 321 (636)
-|. ++.||.|+. .+ ++|..++..+.++| ||||.+++-.|
T Consensus 105 g~~~~~~~~~DavfL-----Dl-p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 105 GFDEELESDFDAVFL-----DL-PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp --STT-TTSEEEEEE-----ES-SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cccccccCcccEEEE-----eC-CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 443 367999976 33 36778999999999 99999999887
No 194
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.07 E-value=6.9e-05 Score=76.48 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=75.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeE-EEEeccccC-----CCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRL-----PYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~-~~~~d~~~L-----pf~~~sFDlV~~s~~ 291 (636)
..++||+|||+|.|+..+++++. .++++ |++..|+....+....+. +...+...+ +..-..+|+++++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~av---D~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGV---DVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEE---eCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 34899999999999999999864 45566 888877776544443322 233333322 212236787777654
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeCCCCcccc-----ccCCCCchhhhHHHHHHHHHHHHHhceEee
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH-----WKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~-----~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v 358 (636)
+ .+..+.+.|+| |.+++..-| ++... .++--++........+.+...+..++|+.+
T Consensus 153 ~---------~l~~i~~~l~~-~~~~~L~KP-qFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 153 S---------ILPELDLLLNP-NDLTLLFKP-QFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred h---------HHHHHHHHhCc-CeEEEEcCh-HhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 4 47889999999 777765321 22111 112222334444555566666667777644
No 195
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.06 E-value=8.5e-06 Score=81.72 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=68.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--cchhh-ccccccCCCCCccceeeeccccccCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLYK 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~~ 553 (636)
..+|||+|||.|.+..+|++..- ...++.+|.++.++..+.++.- +-.+. |. +.++..+.+||+|.+.+++...
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc-
Confidence 46899999999999999987531 1234556666667777766542 11111 21 2333334899999998776533
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.+...+|-++.|+|+|||.+++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 356899999999999999999974
No 196
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.06 E-value=2.1e-05 Score=79.32 Aligned_cols=144 Identities=14% Similarity=0.169 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----C---CCeEEEEecc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----G---VPALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g---~~~~~~~~d~ 273 (636)
+.+.+.+.+.-..+...+.+|||...|-|.+++..+++|. .++.+ +.++..++.|.-+ + ..+.+..+|+
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeLa~lNPwSr~l~~~~i~iilGD~ 194 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLELAKLNPWSRELFEIAIKIILGDA 194 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEeeccCCCCccccccccEEecccH
Confidence 4444444443333343445999999999999999999987 66666 5555666666422 1 1356666776
Q ss_pred ccC--CCCCCCeeEEEecccccccccC--hHHHHHHHHhcccCCcEEEEEe--CCCCccccccCCCCchhhhHHHHHHHH
Q 006662 274 IRL--PYPSRAFDMAHCSRCLIPWGQY--DGLYLIEVDRVLRPGGYWILSG--PPVNWESHWKGWNRTTEDLKSEQNGIE 347 (636)
Q Consensus 274 ~~L--pf~~~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~Liis~--p~~~w~~~~~~W~~t~e~l~~~~~~ie 347 (636)
.++ .|++.+||+|+--.--...... -+.+.+|++|+|||||.++--. |...+.. ...+..+.
T Consensus 195 ~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG------------~d~~~gVa 262 (287)
T COG2521 195 YEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG------------LDLPKGVA 262 (287)
T ss_pred HHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc------------CChhHHHH
Confidence 543 4889999999852211111111 2689999999999999998764 2222211 11344566
Q ss_pred HHHHHhceEeecc
Q 006662 348 TIARSLCWKKLIQ 360 (636)
Q Consensus 348 ~la~~l~Wk~v~~ 360 (636)
+..++.+|.++..
T Consensus 263 ~RLr~vGF~~v~~ 275 (287)
T COG2521 263 ERLRRVGFEVVKK 275 (287)
T ss_pred HHHHhcCceeeee
Confidence 7778889986654
No 197
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.06 E-value=2.5e-05 Score=82.31 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=71.2
Q ss_pred CcEEEEeCCCCc----HHHHHHhhcC-C--EEEEcCcCCchHHHHHHHHHc--------CC-------------------
Q 006662 219 IRTAIDTGCGVA----SWGAYLMSRN-I--LAVSFAPRDTHEAQVQFALER--------GV------------------- 264 (636)
Q Consensus 219 ~r~VLDIGCGtG----~~a~~La~~~-v--~vv~i~p~Dis~a~l~~A~er--------g~------------------- 264 (636)
..+|+..||.+| +++..+.+.. . .-+.|.+.|++..+++.|++- ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4455454431 0 012344459999999988632 00
Q ss_pred ---------CeEEEEeccccCCCC-CCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 265 ---------PALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 265 ---------~~~~~~~d~~~Lpf~-~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
.+.|...+....+++ .+.||+|+|.++++|+.... ..++..+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 134555555554443 57899999999998886443 789999999999999988764
No 198
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=1.8e-05 Score=80.14 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=65.8
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcCCC---eEEE-----------------------
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERGVP---ALIG----------------------- 269 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg~~---~~~~----------------------- 269 (636)
....+|||||-.|.++..+++. + -.++++ ||.+..++.|++.... ....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGv---DID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGV---DIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEe---eccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4458999999999999999987 2 234445 7788888888754210 0000
Q ss_pred ------------------Eecc-ccCCCCCCCeeEEEecccc----cccccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 270 ------------------VMAS-IRLPYPSRAFDMAHCSRCL----IPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 270 ------------------~~d~-~~Lpf~~~sFDlV~~s~~L----~h~~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
+++. +-+.+....||+|+|..+- ..|.++. ..+++.+.++|.|||+|++.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 0112334679999984322 2444444 78999999999999999987
No 199
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.00 E-value=1.1e-05 Score=84.16 Aligned_cols=129 Identities=13% Similarity=0.205 Sum_probs=85.2
Q ss_pred hcchhhHHHHHHHHHHHHHh-hhccCCCCCcceEeeecccchh----hhhhhcCC----CeEEEEecCCCCCccchHHHH
Q 006662 448 EMFREDTALWKKRVTYYKSV-DYQLAQPGRYRNLLDMNAYLGG----FAAALVDD----PLWVMNTVPVEAKINTLGVIY 518 (636)
Q Consensus 448 ~~f~~d~~~w~~~v~~y~~~-~~~l~~~~~~r~vlD~~~g~gg----faa~l~~~----~v~~mnv~~~~~~~~~l~~~~ 518 (636)
..|-.|...|..-.+..... +..... ++.-+|+|+|||+|- .|-.|.+. .-|...|+.+|.++.+|..+.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~-~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRH-GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCC-CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 44777778888765543322 221122 345789999999994 55555442 124568899999988998887
Q ss_pred hhcccc-----------------------------------hhhccccccCCCC-CccceeeeccccccCCCCcCHHHHH
Q 006662 519 ERGLIG-----------------------------------TYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVL 562 (636)
Q Consensus 519 eRgli~-----------------------------------~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l 562 (636)
+ |+.+ ..||..+ ..+| ..||+|.|..+|.... .-....++
T Consensus 150 ~-~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~-~~~~~~~l 225 (264)
T smart00138 150 A-GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFD-EPTQRKLL 225 (264)
T ss_pred c-CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCC-HHHHHHHH
Confidence 5 3211 1123222 1233 8899999988876543 23456899
Q ss_pred HHHhhcccCCcEEEEEeCH
Q 006662 563 LEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 563 ~e~dRiLrPgG~~i~~d~~ 581 (636)
-++-|+|+|||++++....
T Consensus 226 ~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHhCCCeEEEEECcc
Confidence 9999999999999997544
No 200
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.99 E-value=3.4e-05 Score=79.01 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=66.4
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccC-C-----CCCCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRL-P-----YPSRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~L-p-----f~~~sFD 284 (636)
++|||+|||+|.-+..++.. +..++.+ |+++.+++.|+++ +. .+.+..++..+. + .+.++||
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~ti---D~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAI---DIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 38999999999988777764 3455666 7788888777644 33 366777665442 1 1246899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+.-.. .+....++..+.++|||||.+++..
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9987431 1223678999999999999998864
No 201
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.99 E-value=7e-06 Score=85.26 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=64.7
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
..+|||+|||.|..+..+++. +- ...|+.+|.++.++..+.++ |+ +-.++ |. +.+ ++| .+||+|+++.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeEEEEcC
Confidence 569999999998765444322 10 01355567666788888765 32 11111 11 222 344 7999999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++.... +.+.+|-|+-|+|||||.+++.|
T Consensus 155 v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 775433 56889999999999999999975
No 202
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.99 E-value=3.1e-05 Score=85.99 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
...+.+.+.+++...++. +|||+|||+|.++..|++....++++ |+++.+++.|+++ +. ++.+..+|...
T Consensus 277 ~~~l~~~~~~~l~~~~~~--~vLDl~cG~G~~sl~la~~~~~V~~v---E~~~~av~~a~~n~~~~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 277 NEKLVDRALEALELQGEE--LVVDAYCGVGTFTLPLAKQAKSVVGI---EVVPESVEKAQQNAELNGIANVEFLAGTLET 351 (431)
T ss_pred HHHHHHHHHHHhccCCCC--EEEEcCCCcCHHHHHHHHhCCEEEEE---EcCHHHHHHHHHHHHHhCCCceEEEeCCHHH
Confidence 334455566655444444 89999999999999999886666677 8889998888754 33 57788887654
Q ss_pred C----CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 276 L----PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 276 L----pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
. ++.+++||+|+....- ..-...++..+.+ |+|++.++++.
T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHHHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 2 2345679999975432 1112456666554 89999888873
No 203
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=1.3e-05 Score=83.74 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=82.1
Q ss_pred HHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHH----Hhhcccchhhcccccc
Q 006662 459 KRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI----YERGLIGTYQNWCEAM 533 (636)
Q Consensus 459 ~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~eRgli~~~~~~ce~~ 533 (636)
.+...+..++..+.= ...-+|||+|||-|+.+-+++++ +| ||+.++.+++|+..+ .++|+-.-.+.--+..
T Consensus 56 AQ~~k~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~ 131 (283)
T COG2230 56 AQRAKLDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY 131 (283)
T ss_pred HHHHHHHHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc
Confidence 334444444443333 33789999999999999999887 56 666667777777654 5578854333222334
Q ss_pred CCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 534 STYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 534 ~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
..++..||-|-+.|+|..... -..++++--+.++|+|||.+++-
T Consensus 132 rd~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 132 RDFEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cccccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 455555999999999986554 36789999999999999999985
No 204
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.96 E-value=6.3e-06 Score=78.04 Aligned_cols=99 Identities=22% Similarity=0.355 Sum_probs=73.0
Q ss_pred CcceEeeecccchhhhhhhcC-C--CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-CCCccceee
Q 006662 476 RYRNLLDMNAYLGGFAAALVD-D--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YPRTYDLIH 544 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~-~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-yp~t~Dl~H 544 (636)
+.-+|||+|||+|-+.-.|++ . +. +++.+|.++.+++.+.++ |+ +-.++ |+-+ ++. |+..||+|.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEE
Confidence 356899999999999999983 2 23 366678888899888884 55 23333 3323 221 458999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
+.++| .+-.+.+.+|-+|-|.|+|||.+++++..
T Consensus 79 ~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98888 34456678999999999999999998765
No 205
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.95 E-value=2e-05 Score=79.03 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--c
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--I 523 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i 523 (636)
|....+.=..++......+..........+|||+|||.|.++..|.+... .++.+|.++.++..+.++ |+ +
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~ 95 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKI 95 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 44443333334444444443221112356899999999999998877643 355666665666666553 22 2
Q ss_pred chhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 524 GTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 524 ~~~~-~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.... +..+.....|.+||+|.+.+++... .+...+|-++.++|+|||.+++++
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 2222 1111111225789999997776543 356889999999999999999975
No 206
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.95 E-value=2.6e-05 Score=81.54 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=64.1
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccCCCCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPS 280 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~Lpf~~ 280 (636)
..++.+.+.+...++. +|||||||+|.++..+++++..++++ |+++.+++.++++. .++.+..+|...+++++
T Consensus 29 ~i~~~i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~av---E~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGD--NVLEIGPGLGALTEPLLERAAKVTAV---EIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCCcEEEE---ECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 3556677766655554 89999999999999999986666666 88889999887654 46788888988887664
Q ss_pred CCeeEEEeccc
Q 006662 281 RAFDMAHCSRC 291 (636)
Q Consensus 281 ~sFDlV~~s~~ 291 (636)
-.+|.|+++.-
T Consensus 104 ~~~~~vv~NlP 114 (272)
T PRK00274 104 LQPLKVVANLP 114 (272)
T ss_pred cCcceEEEeCC
Confidence 33588888753
No 207
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.94 E-value=3.4e-06 Score=73.75 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=52.4
Q ss_pred eeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccc--hhhccc-cccCCCC-CccceeeeccccccC
Q 006662 481 LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG--TYQNWC-EAMSTYP-RTYDLIHADSIFSLY 552 (636)
Q Consensus 481 lD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~--~~~~~c-e~~~~yp-~t~Dl~H~~~~fs~~ 552 (636)
||+|||.|.+..+|.+.- -...++.+|.++.++..+.+| +.-. ...--. +.+...+ .+||+|.+.++|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998762 235666777777788444443 2100 111001 2233333 599999999999876
Q ss_pred CCCcCHHHHHHHHhhcccCCcEE
Q 006662 553 KDRCEMEDVLLEMDRILRPEGSV 575 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG~~ 575 (636)
-+++.+|-.+.++|+|||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56789999999999999986
No 208
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.93 E-value=2.5e-05 Score=77.60 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhh-ccccccCCCC-Cccceeeecccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~-~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
...+|||+|||.|.+..++.+..--.-.++.+|.++..+..+.++.- +-.++ |..+ .. ++ .+||+|++..++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LP-FEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CC-CCCCcEEEEEEeeee
Confidence 46799999999999999887652100245555655567777776642 12222 2111 12 33 689999987666
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.. -.+...+|.++.++|+|||++++.+
T Consensus 117 ~~---~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RN---VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CC---cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 3457899999999999999999865
No 209
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.93 E-value=4.6e-05 Score=79.04 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf 278 (636)
...++.+.+.+...++. +|||||||+|.++..+++++..++.+ |+++.+++.++++. .++.+..+|...+++
T Consensus 15 ~~~~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~~~v~~v---Eid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGD--PVLEIGPGKGALTDELAKRAKKVYAI---ELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEEeCccCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 34556677766655554 89999999999999999987666666 88889988887653 357888888888776
Q ss_pred CCCCeeEEEecccc
Q 006662 279 PSRAFDMAHCSRCL 292 (636)
Q Consensus 279 ~~~sFDlV~~s~~L 292 (636)
+ .||.|+++..+
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 5 48999998765
No 210
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.91 E-value=2.2e-05 Score=78.73 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=70.6
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCCC-CccceeeeccccccCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
...|||+|||+|.+..+|.+. +- .++..+|.++.++..+.++.- +.+.+ ...+.+++ ++||+|-+.+++....
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~--~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQ--GSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEE--eeccCCCCCCCEEEEEECChhhhCC
Confidence 567999999999999999875 32 357777888889999877521 12222 12233555 8999999999987653
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.-.+..+|-||.|++ +++++|.+
T Consensus 120 -p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 346788999999998 57888864
No 211
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.90 E-value=0.0001 Score=64.60 Aligned_cols=95 Identities=28% Similarity=0.408 Sum_probs=66.8
Q ss_pred EEEeCCCCcHHH--HHHhhcCCEEEEcCcCCchHHHHHHHHHcC--CC---eEEEEecccc--CCCCC-CCeeEEEeccc
Q 006662 222 AIDTGCGVASWG--AYLMSRNILAVSFAPRDTHEAQVQFALERG--VP---ALIGVMASIR--LPYPS-RAFDMAHCSRC 291 (636)
Q Consensus 222 VLDIGCGtG~~a--~~La~~~v~vv~i~p~Dis~a~l~~A~erg--~~---~~~~~~d~~~--Lpf~~-~sFDlV~~s~~ 291 (636)
+||+|||+|... ..+...+..++++ |.+..++..+.... .. +.+...+... +++.. ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGV---DLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEE---eCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999955 3333323345554 77777776654332 11 3566666555 77777 489999 6666
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..++.. ....+.++.++|+|+|.+++...
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 656554 78999999999999999999865
No 212
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.89 E-value=7.4e-05 Score=73.94 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=67.2
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh----hcc--cchhh-ccccccCCCCCccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl--i~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
...+|||+|||+|.++..++.. +- -.|+.+|.++.++..+.+ .|+ +-+++ |.-+.+...+..+|.++.++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 3568999999999998887642 11 234555666567666554 244 12221 11111111222356655422
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCC
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGME 595 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~ 595 (636)
...++.++-++.|+|+|||++++... .+.+..+.+.++.+.
T Consensus 118 -------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 23578999999999999999999753 345555666665553
No 213
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.89 E-value=7.8e-05 Score=81.48 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=68.4
Q ss_pred cEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-CCCCCeeEEEeccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP-YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp-f~~~sFDlV~~s~~L~ 293 (636)
.+|||+|||+|.++..++.++..++++ |+++.+++.|+++ +. ++.+..+|..... ...+.||+|+..--.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~v---E~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr- 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGI---EIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR- 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC-
Confidence 489999999999999999887667677 8888888877644 33 5678877765432 122469999987643
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..-...++..+. .++|++.++++..
T Consensus 311 --~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 --RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 212245556664 4799999999954
No 214
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.88 E-value=4.3e-05 Score=81.38 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=67.3
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
++|||||||+|.++..-++.|. .+.++...++..-..+.++.++.. +.+..+.++++.+|....|+|++-+.-.-..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll 141 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL 141 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHH
Confidence 4999999999999999998864 455664445555555556666654 4555555666555678899999854331111
Q ss_pred -cC-hHHHHHHHHhcccCCcEEEE
Q 006662 297 -QY-DGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 297 -~d-~~~~L~el~RvLKPGG~Lii 318 (636)
+. ...+|-.=.+.|+|||.++=
T Consensus 142 ~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 142 YESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HhhhhhhhhhhhhhccCCCceEcc
Confidence 11 15667777899999998754
No 215
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.88 E-value=3.3e-05 Score=90.89 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=71.2
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccC-CCCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL-PYPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~L-pf~~~sFDlV~~s~ 290 (636)
++|||+|||+|.++..++..+. .++.+ |+++.+++.|+++ +. .+.+..+|..+. .-..++||+|++..
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~v---D~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTV---DMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4899999999999999999865 46666 9999999888754 33 367777776432 11146899999853
Q ss_pred ccccc----------ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPW----------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~----------~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
-...- ..+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22110 11124678888999999999998754
No 216
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.88 E-value=9.5e-05 Score=81.41 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=67.4
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccCC--C--CCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRLP--Y--PSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~Lp--f--~~~sFDlV~ 287 (636)
.+|||+|||+|.++..++..+. .++.+ |+++.+++.|+++ +. .+.+..+|....- + ..++||+|+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~V---D~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSV---DTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4899999999999988766543 55566 8898988887644 43 3577777765431 1 246899999
Q ss_pred eccccccccc--------ChHHHHHHHHhcccCCcEEEEEe
Q 006662 288 CSRCLIPWGQ--------YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 288 ~s~~L~h~~~--------d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+..-...-.. +-..++....++|+|||.|++..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8743211110 11345556789999999999865
No 217
>PLN02672 methionine S-methyltransferase
Probab=97.87 E-value=0.00024 Score=86.24 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=68.0
Q ss_pred cEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHHHHcC---------------------CCeEEEEeccccC
Q 006662 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG---------------------VPALIGVMASIRL 276 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A~erg---------------------~~~~~~~~d~~~L 276 (636)
.+|||+|||+|.++..++++. ..++.+ |+++.+++.|+++. ..+.+...|....
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~av---Dis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGL---DINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 489999999999999999863 455566 88999998885431 1356676675432
Q ss_pred CCCC--CCeeEEEecccccccc---------------------------------cCh----HHHHHHHHhcccCCcEEE
Q 006662 277 PYPS--RAFDMAHCSRCLIPWG---------------------------------QYD----GLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 277 pf~~--~sFDlV~~s~~L~h~~---------------------------------~d~----~~~L~el~RvLKPGG~Li 317 (636)
+.+ ..||+|+++--.+.-. ++. ..++.+..++|+|||.++
T Consensus 197 -~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 -CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred -ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 222 3699999965432110 111 357778889999999999
Q ss_pred EEeC
Q 006662 318 LSGP 321 (636)
Q Consensus 318 is~p 321 (636)
+...
T Consensus 276 lEiG 279 (1082)
T PLN02672 276 FNMG 279 (1082)
T ss_pred EEEC
Confidence 8743
No 218
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.87 E-value=1.5e-05 Score=80.77 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhh--ccccccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQ--NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~--~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
.+...|||+|||.|.++..|.+.. .+++.+|.++..+..+.++ ++...++ ++.+.....+..||+|.+..+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 345679999999999999998875 3566677776777776665 3311111 222221123478999999877
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
|.... +...+|-++.|+|+|||.+++...
T Consensus 124 l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 124 LEHVP---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 76543 457899999999999999999853
No 219
>PRK04266 fibrillarin; Provisional
Probab=97.85 E-value=9.6e-05 Score=75.35 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=55.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----h-cccchhhcccccc--CCCCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----R-GLIGTYQNWCEAM--STYPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----R-gli~~~~~~ce~~--~~yp~t~Dl~H~~~~f 549 (636)
...|||+|||.|++..+|++.-= .-.|...|.++.++..+.+ + ++..+..|-.+.. ...+.+||+|=++
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--- 148 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD--- 148 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC---
Confidence 45899999999999999987510 0134555666566664433 2 2222222322211 1224668875331
Q ss_pred ccCCCCcCH---HHHHHHHhhcccCCcEEEEE
Q 006662 550 SLYKDRCEM---EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 550 s~~~~~c~~---~~~l~e~dRiLrPgG~~i~~ 578 (636)
-++. ..+|.|+-|+|||||.++|+
T Consensus 149 -----~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 149 -----VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1221 24577999999999999993
No 220
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.85 E-value=2.2e-05 Score=77.77 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=74.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcc--cchhhccccccC--CCC-Cccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQNWCEAMS--TYP-RTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--i~~~~~~ce~~~--~yp-~t~Dl~H~~~ 547 (636)
-..|||+|||.|.|+.+|+.+.- -.||+.+|.+..++..+.+ .|+ +-+.+.=...+. .+| .++|.|+++-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46899999999999999987521 1366777777677766654 344 122221011111 245 5899887642
Q ss_pred c---cc--cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhc
Q 006662 548 I---FS--LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDG 593 (636)
Q Consensus 548 ~---fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~ 593 (636)
- +. ..+.|...+.+|-++-|+|||||.+++. |..+....+.+.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 1 11 1224555688999999999999999985 666666666665544
No 221
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.85 E-value=0.00014 Score=75.16 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYP 279 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~ 279 (636)
..++.+.+.+...++. +|||||||+|.++..|+++...++.+ |+++.+++.++++. .++.+...|...++++
T Consensus 16 ~i~~~i~~~~~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~~i---E~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGD--VVLEIGPGLGALTEPLLKRAKKVTAI---EIDPRLAEILRKLLSLYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCCCCcC--EEEEeCCCCCHHHHHHHHhCCcEEEE---ECCHHHHHHHHHHhCcCCcEEEEECchhcCChh
Confidence 3455666666555544 99999999999999999987666666 88888888887552 4577888888887765
Q ss_pred CCCee---EEEecccc
Q 006662 280 SRAFD---MAHCSRCL 292 (636)
Q Consensus 280 ~~sFD---lV~~s~~L 292 (636)
+|| +|+++..+
T Consensus 91 --~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --DFPKQLKVVSNLPY 104 (253)
T ss_pred --HcCCcceEEEcCCh
Confidence 466 77776543
No 222
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00015 Score=77.48 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=84.3
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEE-eccccCCCC
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGV-MASIRLPYP 279 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~-~d~~~Lpf~ 279 (636)
..+.++.....|. .|||-=||||.+.....-.|..+++. |++..|++-|+.+ ++ ...+.. .|+..+|++
T Consensus 187 R~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~---Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 187 RAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGS---DIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeec---chHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC
Confidence 3445555556666 89999999999999998889988888 9999999988755 22 233334 499999999
Q ss_pred CCCeeEEEecccc-----cccc--cCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCL-----IPWG--QYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L-----~h~~--~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+++||.|.+-.-. ..-. ++. ..+|..+.++|++||++++..|
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999999983211 0111 111 6789999999999999999987
No 223
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.82 E-value=7.8e-05 Score=71.82 Aligned_cols=116 Identities=14% Similarity=0.029 Sum_probs=88.7
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-----C
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----Y 278 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp-----f 278 (636)
..+.++..+.... +.-|||+|.|||-++..++++++.-.++...+.+.+......+....+.+..+|+..+. +
T Consensus 36 lA~~M~s~I~pes--glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVIDPES--GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccCccc--CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 4445555554333 34799999999999999999977655555568888988888888877778888876654 5
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 279 ~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.+..||.|+|.--+..++... -++++++...|++||.++--..
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 678899999976665555444 6789999999999999987643
No 224
>PRK06202 hypothetical protein; Provisional
Probab=97.82 E-value=4.8e-05 Score=77.24 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=70.4
Q ss_pred CCcceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhhcc-cc--hhhccccccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYERGL-IG--TYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eRgl-i~--~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
.+..+|||+|||+|.++..|.+. .-...+|+.+|.++.++..+.++.- .+ ....=++.+..-+.+||+|-++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45678999999999998887642 1112478888998899999988732 11 111112344443589999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|....+. ++..+|-||-|++| |.+++.|
T Consensus 139 lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 7654432 35679999999999 5666665
No 225
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.80 E-value=0.00019 Score=74.06 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhccCC-CCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEe--
Q 006662 201 ADAYIDDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG----VPALIGVM-- 271 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~-g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~-- 271 (636)
+++..+.+.+.+.... -....+||+|||+|.++..++.. ..+++.+ |.|++++..|.++. ..-.+.+.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~Ai---D~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAI---DVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEE---eccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 5666777776664322 12237999999999999999876 4555666 99999999887652 22122221
Q ss_pred --c---cccCCCCCCCeeEEEecccccccccChH-------------------------HHHHHHHhcccCCcEEEEEeC
Q 006662 272 --A---SIRLPYPSRAFDMAHCSRCLIPWGQYDG-------------------------LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 272 --d---~~~Lpf~~~sFDlV~~s~~L~h~~~d~~-------------------------~~L~el~RvLKPGG~Liis~p 321 (636)
. ....+...+.+|+++|+--.+.-.+.+. .++.-+.|.|+|||.+++..-
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 1223355789999999765422211110 345567899999999999853
No 226
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.78 E-value=0.00015 Score=70.88 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHH----HHcC----CCeEEEEecccc-C--C-CCCCCe
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFA----LERG----VPALIGVMASIR-L--P-YPSRAF 283 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A----~erg----~~~~~~~~d~~~-L--p-f~~~sF 283 (636)
.+.+|||+|||+|..+..++.. ...++-. |.++ .++.. ..++ ..+.+...+-.. . . .....|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~T---D~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLT---DYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEE---E-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEe---ccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3459999999999988888887 3333333 3343 33332 2222 234444443211 1 1 234689
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|+++.++ +.....+.++.-+.++|+|+|.++++.+
T Consensus 121 D~IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 121 DVILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred CEEEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999999999 4444558899999999999999777754
No 227
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.78 E-value=0.00012 Score=76.33 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCCc----HHHHHHhhcCC----EEEEcCcCCchHHHHHHHHH---------cCCC---------------
Q 006662 218 SIRTAIDTGCGVA----SWGAYLMSRNI----LAVSFAPRDTHEAQVQFALE---------RGVP--------------- 265 (636)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~~v----~vv~i~p~Dis~a~l~~A~e---------rg~~--------------- 265 (636)
..-+|.-.||++| +++..|.+... ..+.|.+.|++...++.|+. ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 55555555432 24566667999999988852 1111
Q ss_pred ----------eEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 266 ----------ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 266 ----------~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
+.|...+...-++..+.||+|+|-++|+.+.... ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2333333333332456799999999998886444 789999999999999999974
No 228
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.77 E-value=2.6e-05 Score=84.04 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=79.1
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc---cchhhccccccCCCC-Cccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||+|.++..+++. +- .+|+.+|.+++++..+.++.- +.+.+.-.+.+ +++ .+||+|-+.+++..
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhh
Confidence 568999999999988887653 21 356667777788888877632 12222111222 344 79999988777654
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------------HHHHHHHHHhcCCCceE
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRDDVD-----------------ILVKIKSITDGMEWEGR 599 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-----------------~~~~~~~~~~~~~W~~~ 599 (636)
.. +.+.+|-|+-|+|+|||.+++.+... ..+.+.++++...++..
T Consensus 191 ~~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 191 WP---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 44 44789999999999999998864321 13556667777777654
No 229
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.77 E-value=6.1e-05 Score=82.28 Aligned_cols=120 Identities=15% Similarity=0.132 Sum_probs=76.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHH----Hhhcc--cchhh-ccccccCCCC-Cccceeeecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI----YERGL--IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~eRgl--i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
....+||+|||.|.|..+|+...= -.|++.+|-+..++..+ .++|+ +-+++ |.-+-+..+| .++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln- 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH- 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe-
Confidence 356899999999999999986520 12566666665554444 44565 22222 2212233455 899999874
Q ss_pred cccc-C-C---CCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC-CCce
Q 006662 548 IFSL-Y-K---DRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGM-EWEG 598 (636)
Q Consensus 548 ~fs~-~-~---~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~-~W~~ 598 (636)
|.. | + .|=-.+.+|-|+-|+|+|||.+.| +|..++...+.+.+... +++.
T Consensus 200 -FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 -FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred -CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 432 1 1 122236899999999999999988 57777777666665444 4444
No 230
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.77 E-value=3.6e-05 Score=77.53 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=57.2
Q ss_pred CcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC--Cccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp--~t~Dl~H~~ 546 (636)
...+|||+|||+|.+++.|++. +- .-.|+.+|..+.++..+.++ |+ +-+. .+..+..++ ..||+|++.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~--~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVI--VGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE--ECCcccCCCcCCCcCEEEEC
Confidence 3679999999999999877653 00 01233344454666666554 33 1122 123344454 789999984
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+. .+.+.-++-+.|||||.+++-
T Consensus 153 ~~---------~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 153 AA---------GPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CC---------cccchHHHHHhhCCCcEEEEE
Confidence 43 344455677799999999985
No 231
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.75 E-value=4e-05 Score=75.33 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=70.5
Q ss_pred cceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhhcccchhhcccccc------CCCC-Cccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM------STYP-RTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~------~~yp-~t~Dl~H 544 (636)
..+|||+|||.|++..++.++ .|+.. |.++ +. ...++--+..|..+.. ..+| .+||+|=
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~v-----Dis~-~~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAV-----DLQP-MK---PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEE-----eccc-cc---cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 568999999999998877653 14443 3331 11 0012211112333211 1244 6799888
Q ss_pred eccccc------cC--CCCcCHHHHHHHHhhcccCCcEEEEEe-CH----HHHHHHHHHHhcCCCceEEe-ccCCCCCCc
Q 006662 545 ADSIFS------LY--KDRCEMEDVLLEMDRILRPEGSVIIRD-DV----DILVKIKSITDGMEWEGRIA-DHENGPRQR 610 (636)
Q Consensus 545 ~~~~fs------~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~----~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~ 610 (636)
+++... .. ...+.++.+|.++.|+|||||.+++.. .. +++..+++ .+ |.+.+. |.-....+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~ 179 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSA 179 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccc
Confidence 754321 11 111234789999999999999999942 22 23333333 22 445433 322333357
Q ss_pred ceEEEEE
Q 006662 611 EKILFAN 617 (636)
Q Consensus 611 ~~~l~~~ 617 (636)
|+.+||.
T Consensus 180 ~~~~~~~ 186 (188)
T TIGR00438 180 EVYIVAK 186 (188)
T ss_pred eEEEEEe
Confidence 8999885
No 232
>PRK14967 putative methyltransferase; Provisional
Probab=97.75 E-value=7.1e-05 Score=75.69 Aligned_cols=120 Identities=13% Similarity=0.256 Sum_probs=74.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp-~t~Dl~H~~~~f 549 (636)
...|||+|||.|.++..+++.+. -+|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+ ..||+|.++--|
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCC
Confidence 46899999999999998887643 2556667666677655542 33 11221 3322 234 689999987433
Q ss_pred ccCC------------------CCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCceEEe
Q 006662 550 SLYK------------------DRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 550 s~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 601 (636)
.... ....++.++.++-|+|+|||.+++-. .......+.+.+++-.|+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 2110 11225678889999999999999842 2223344555555556655543
No 233
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.75 E-value=8.8e-05 Score=76.81 Aligned_cols=136 Identities=17% Similarity=0.304 Sum_probs=84.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh---cc---cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.+|++..- ...|+.+|.++..+..+.+. +. +-+++ |+ +...+ .+||+|-++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 45799999999999999976520 13566667776777777664 22 22222 33 33344 78999987533
Q ss_pred cccC-------------CC-------C---cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCC
Q 006662 549 FSLY-------------KD-------R---CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHEN 605 (636)
Q Consensus 549 fs~~-------------~~-------~---c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~ 605 (636)
+... .. . -.+..++-++.++|+|||++++--....-..++++++...+...... .|
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~-~d 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR-KD 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe-cC
Confidence 2210 00 0 01346888899999999999997544555667777776666522211 11
Q ss_pred CCCCcceEEEEEe
Q 006662 606 GPRQREKILFANK 618 (636)
Q Consensus 606 ~~~~~~~~l~~~K 618 (636)
-.+.+++++++|
T Consensus 264 -~~~~~r~~~~~~ 275 (275)
T PRK09328 264 -LAGRDRVVLGRR 275 (275)
T ss_pred -CCCCceEEEEEC
Confidence 225678888765
No 234
>PRK06922 hypothetical protein; Provisional
Probab=97.74 E-value=2.9e-05 Score=89.12 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc-----cchhhccccccCC-C-CCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMST-Y-PRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----i~~~~~~ce~~~~-y-p~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.+|++. + ..+|+.+|.+..++..+.++-- +-+++.=+..++. + |.+||+|.++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 468999999999998888753 2 2467778888888888876521 1111111122332 4 489999988665
Q ss_pred cccC-------C---CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 549 FSLY-------K---DRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 549 fs~~-------~---~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
+-.. . +.-++..+|.|+.|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4311 1 123567899999999999999999874
No 235
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.73 E-value=9e-05 Score=75.79 Aligned_cols=118 Identities=18% Similarity=0.296 Sum_probs=75.8
Q ss_pred ccCCCCCcceEeeecccchhhhhhhcCCCeEE------EEecCCCCCccchHHHHhhcccchhh-----cc----ccccC
Q 006662 470 QLAQPGRYRNLLDMNAYLGGFAAALVDDPLWV------MNTVPVEAKINTLGVIYERGLIGTYQ-----NW----CEAMS 534 (636)
Q Consensus 470 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~------mnv~~~~~~~~~l~~~~eRgli~~~~-----~~----ce~~~ 534 (636)
.|++ +..-++|||+||+|-.|..+.++ |-. -+|.-.|-+++||.+...|-.-+-|. -| .|.++
T Consensus 95 ~L~p-~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 95 KLGP-GKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred ccCC-CCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 4666 66799999999999888877654 111 33444455568998887776321111 13 25666
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH-HHHHHHHhc
Q 006662 535 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDIL-VKIKSITDG 593 (636)
Q Consensus 535 ~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~-~~~~~~~~~ 593 (636)
|| .+||+.-.. |+.. +--+++..|-|+.|||+|||.|.+=+=.++- +.|+.+...
T Consensus 173 -Fdd~s~D~yTia--fGIR-N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 173 -FDDDSFDAYTIA--FGIR-NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred -CCCCcceeEEEe--ccee-cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 87 999985531 2211 1134689999999999999999886544333 344544443
No 236
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00017 Score=71.85 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=71.4
Q ss_pred HHHHhhc--cCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcC---------------CC
Q 006662 207 DIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---------------VP 265 (636)
Q Consensus 207 ~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg---------------~~ 265 (636)
.+.++|. +.+|. +.||+|.|+|.++..++.. +...++| +..++.++.+.++- ..
T Consensus 71 ~~le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GI---Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 71 TALEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGI---EHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccch---hhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 3444444 45666 8999999999998888754 3322444 77888887776431 13
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..+.++|....--+...||.||+.... ....+++...|+|||.+++-.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 566777777666667889999996433 345577888899999998863
No 237
>PRK04148 hypothetical protein; Provisional
Probab=97.70 E-value=0.0002 Score=67.12 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred HHHHHhhccCCCCCcEEEEeCCCCcH-HHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCC-CCCe
Q 006662 206 DDIGKLINLKDGSIRTAIDTGCGVAS-WGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAF 283 (636)
Q Consensus 206 d~L~~lL~l~~g~~r~VLDIGCGtG~-~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~-~~sF 283 (636)
+.|.+.++... ..++||||||+|. ++..|++.|..++.+ |+++..++.+++++. .+...|..+-++. -+.+
T Consensus 6 ~~l~~~~~~~~--~~kileIG~GfG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 6 EFIAENYEKGK--NKKIVELGIGFYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHHHhccccc--CCEEEEEEecCCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcC
Confidence 34555544333 3589999999995 999999999888888 999999999988875 4445555443322 3569
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
|+|++.+.- .+....+.++.+.+ |.-+++.
T Consensus 79 ~liysirpp----~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 79 KLIYSIRPP----RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred CEEEEeCCC----HHHHHHHHHHHHHc--CCCEEEE
Confidence 999987633 23345566666554 4556665
No 238
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.70 E-value=0.0003 Score=70.70 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhccCCC--CCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDG--SIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g--~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf 278 (636)
...++.+.+....... ...++|||||=+......-... .++.+ |++. ..-.+.+.|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~I-----DLns----------~~~~I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRI-----DLNS----------QHPGILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEe-----ecCC----------CCCCceeeccccCCC
Confidence 4455555555432211 2358999999865433222111 23333 5542 112355567777766
Q ss_pred C---CCCeeEEEecccccccccCh---HHHHHHHHhcccCCcE-----EEEEeCCCCccccccCCCCchhhhHHHHHHHH
Q 006662 279 P---SRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGY-----WILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (636)
Q Consensus 279 ~---~~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~-----Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie 347 (636)
| ++.||+|.++.+| .+.+++ ...++.+.+.|+|+|. |+++.|..- ..... ....+.+.
T Consensus 98 p~~~~e~FdvIs~SLVL-NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C--v~NSR--------y~~~~~l~ 166 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVL-NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC--VTNSR--------YMTEERLR 166 (219)
T ss_pred CCCcccceeEEEEEEEE-eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH--hhccc--------ccCHHHHH
Confidence 4 6799999999999 666677 6899999999999999 999987332 11110 11234577
Q ss_pred HHHHHhceEeecc
Q 006662 348 TIARSLCWKKLIQ 360 (636)
Q Consensus 348 ~la~~l~Wk~v~~ 360 (636)
++.+++||..+..
T Consensus 167 ~im~~LGf~~~~~ 179 (219)
T PF11968_consen 167 EIMESLGFTRVKY 179 (219)
T ss_pred HHHHhCCcEEEEE
Confidence 8899999987764
No 239
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.68 E-value=5.3e-05 Score=77.09 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=74.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhh-ccccccCC----CC-Cccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMST----YP-RTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-~~ce~~~~----yp-~t~Dl~H~~~~fs 550 (636)
.-.|||+|||-|.++..|+..+ -+|..+|.++..++++..+.+.+-+. +|= .+.. -. .+||.|-|..|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~-~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYR-QATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccch-hhhHHHHHhcCCCccEEEEhhHHH
Confidence 4579999999999999999999 68999999999999998776643222 110 1111 11 5899888866666
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+ -+.+.++.+..+.|||||.++++.-
T Consensus 136 Hv---~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HV---PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred cc---CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 44 4557899999999999999999853
No 240
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.66 E-value=0.00074 Score=72.33 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhccC------CCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc-----CCC--
Q 006662 201 ADAYIDDIGKLINLK------DGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GVP-- 265 (636)
Q Consensus 201 ~~~~id~L~~lL~l~------~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er-----g~~-- 265 (636)
.-.|+..+.+++... .+...++||||||+|.+...|+.+ +..++++ |+++.+++.|+++ +..
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~at---DId~~Al~~A~~Nv~~Np~l~~~ 167 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGS---DIDPQALASAQAIISANPGLNGA 167 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEE---eCCHHHHHHHHHHHHhccCCcCc
Confidence 455777787776421 234568999999999888888765 4555555 8888888887643 222
Q ss_pred eEEEE-eccccCC----CCCCCeeEEEecccccc
Q 006662 266 ALIGV-MASIRLP----YPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 266 ~~~~~-~d~~~Lp----f~~~sFDlV~~s~~L~h 294 (636)
+.+.. .+...+. .+.+.||+|+|+--++.
T Consensus 168 I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 168 IRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 33322 1222211 24568999999986633
No 241
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.65 E-value=1.2e-05 Score=70.84 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=63.5
Q ss_pred EeeecccchhhhhhhcCCC--eEEEEecCCCCCccchHHHHhhccc-c-hhhccccccCCCC---CccceeeeccccccC
Q 006662 480 LLDMNAYLGGFAAALVDDP--LWVMNTVPVEAKINTLGVIYERGLI-G-TYQNWCEAMSTYP---RTYDLIHADSIFSLY 552 (636)
Q Consensus 480 vlD~~~g~ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~eRgli-~-~~~~~ce~~~~yp---~t~Dl~H~~~~fs~~ 552 (636)
|||+|||.|....++.+.- ---..+..+|.++.+|..+.++.-- + -.+--+..+...| .+||+|=+.+.+-.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999987651 0125777888888999999988831 1 1111123333333 799999997663333
Q ss_pred CCCcCHHHHHHHHhhcccCCc
Q 006662 553 KDRCEMEDVLLEMDRILRPEG 573 (636)
Q Consensus 553 ~~~c~~~~~l~e~dRiLrPgG 573 (636)
-..-.++.+|-++-++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 555678899999999999998
No 242
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.65 E-value=7.7e-05 Score=62.87 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=63.0
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH---hhcc---cchhh-ccccccCC-CCCccceeeeccccc
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY---ERGL---IGTYQ-NWCEAMST-YPRTYDLIHADSIFS 550 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---eRgl---i~~~~-~~ce~~~~-yp~t~Dl~H~~~~fs 550 (636)
+|+|+|||.|++...+.+.+. ..+...|.+++.+..+. +.+. +-.++ |+. .+.. -+..||++.+++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAE-ELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChh-hhccccCCceEEEEEcccee
Confidence 489999999999999987432 34455555544555444 1111 22232 222 2222 347899999988877
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.. .-....++-.+.++|||||++++.
T Consensus 78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53 235578999999999999999987
No 243
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.64 E-value=0.00013 Score=74.20 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=79.6
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccc-cccCCCC-Cccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYP-RTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~c-e~~~~yp-~t~Dl~H~~~~f 549 (636)
..+|||+|||.|.++.++++. +- .+++.+|.++.++..+.++ |+- .++-.+ ..+..++ ..||+|-++--|
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECCCC
Confidence 357999999999999999875 22 2566667666677666543 441 122122 2334454 789999886554
Q ss_pred ccCC------CCc-----------------CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE
Q 006662 550 SLYK------DRC-----------------EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 550 s~~~------~~c-----------------~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
.... ... ....++-++-|+|+|||.+++.........+++++++..++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 4211 000 0236788999999999999998766666778888887777644
No 244
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.63 E-value=0.00017 Score=75.72 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=87.0
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchh-hccccccCCCC-Cccceeeecc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTY-QNWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~-~~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
.+|||+|||.|.++.+|++. +- .+|+.+|.+...+.++.+. |+ +-.+ .||.+. .+ ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECC
Confidence 57999999999999999864 21 2566677776778777664 33 2233 255543 34 3799887641
Q ss_pred -------------ccccCCCC---------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHh-cCCCceEEeccC
Q 006662 548 -------------IFSLYKDR---------CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITD-GMEWEGRIADHE 604 (636)
Q Consensus 548 -------------~fs~~~~~---------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~-~~~W~~~~~~~e 604 (636)
++...... -.+..++-+.-++|+|||++++--..+.-..+.++.. ...|..... ..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~ 269 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GR 269 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ec
Confidence 11100000 0245789999999999999999766666677788766 466743221 22
Q ss_pred CCCCCcceEEEEEec
Q 006662 605 NGPRQREKILFANKK 619 (636)
Q Consensus 605 ~~~~~~~~~l~~~K~ 619 (636)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 2357888888653
No 245
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.63 E-value=0.00012 Score=65.62 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=60.5
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh----hcccc--hhh-ccccccCCCCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLIG--TYQ-NWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgli~--~~~-~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+|||+|||.|.++.++++. +- .+|+.+|.++.++..+.+ .|+-. +.. |.-+.....+.+||.|=+.+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 459999999999999999875 21 356666766666666532 23311 111 100111122468998766332
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+ ..++.++-++-|+|+|||++++.
T Consensus 98 ~------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 G------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred c------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 2 23468999999999999999985
No 246
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.63 E-value=0.00016 Score=74.87 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=84.6
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhh-ccccccCC-CCCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQ-NWCEAMST-YPRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~-~~ce~~~~-yp~t~Dl~H~~~~f 549 (636)
..+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ .+++ |+.+.+.. ....||+|=+|==+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 357999999999999888653 21 2455667766777766543 32 2222 44332221 23579998776433
Q ss_pred cc-------------CCCCcC----------HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCCC
Q 006662 550 SL-------------YKDRCE----------MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENG 606 (636)
Q Consensus 550 s~-------------~~~~c~----------~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 606 (636)
.. +..+.. +..++..+.++|+|||.+++--..+....+..++++..|+..+..|++.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 21 111111 3478888899999999999976666778899999999999999888764
No 247
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.63 E-value=9.7e-05 Score=74.26 Aligned_cols=102 Identities=10% Similarity=0.088 Sum_probs=72.1
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccch----hhccccccCCCCCccceeeeccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGT----YQNWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~----~~~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
.+..+|||+|||.|.++.+|++.+. .|+.+|.++.++..+.++.-... ..-.+..+...|.+||+|=+..++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 3467999999999999999988754 56777888789988887642111 1111233333458899987766654
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
.+. ..++..++.++.|+++|++++.+...
T Consensus 131 ~~~-~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 131 HYP-ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred hCC-HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 432 34567899999999999888887643
No 248
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.63 E-value=0.00015 Score=72.88 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=65.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----c---cchhh-ccccccCCC-CCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTY-PRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l---i~~~~-~~ce~~~~y-p~t~Dl~H~~~ 547 (636)
...|||+|||.|.++..+.+..--.-.++.+|.+++.+..+.++- + +-+++ |.. .+. + +.+||+|.+..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCC-CCCCCccEEEEec
Confidence 468999999999998888664200124555666656777666652 2 22222 211 111 3 37899998865
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++. +..+.+.+|-++.++|+|||.+++.+
T Consensus 130 ~l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 543 34567899999999999999999864
No 249
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.63 E-value=8e-05 Score=74.92 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=69.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccc------cCCC-CCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEA------MSTY-PRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~------~~~y-p~t~Dl~H~~~~f 549 (636)
..+|||+|||+|+|...+++..--.-.|+.+|..+ +.++ .|+.-+..|..+. ...+ +.+||+|-++...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 45899999999999888866410001223333331 1110 1221111122211 0123 3789999886532
Q ss_pred ccCCCC--------cCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEE
Q 006662 550 SLYKDR--------CEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADHENGPRQREKILFA 616 (636)
Q Consensus 550 s~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~ 616 (636)
...... ...+.+|-|+-|+|+|||.+++..- .+.+..+++....... ..+...-.-..|..+||
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSREVYIVA 204 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCceeEEEe
Confidence 221111 1135789999999999999999532 2333333333333222 22323333357888888
Q ss_pred E
Q 006662 617 N 617 (636)
Q Consensus 617 ~ 617 (636)
.
T Consensus 205 ~ 205 (209)
T PRK11188 205 T 205 (209)
T ss_pred e
Confidence 5
No 250
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.62 E-value=0.00015 Score=76.30 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=78.5
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~ 546 (636)
..+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ +-.++ |+ +...| ..||+|-++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEEC
Confidence 457999999999999999865 21 2566677776787777654 54 22232 33 33445 589998875
Q ss_pred ccccc------------CC---------CCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEecc
Q 006662 547 SIFSL------------YK---------DRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADH 603 (636)
Q Consensus 547 ~~fs~------------~~---------~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~ 603 (636)
-=+.. +. +.. ....++-++-++|+|||++++--..+. .++++++....|....+++
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 21110 00 011 125788999999999999998654433 6888887766555444443
No 251
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.60 E-value=3.9e-05 Score=79.57 Aligned_cols=94 Identities=23% Similarity=0.305 Sum_probs=71.7
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccCh-
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD- 299 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~- 299 (636)
.+||+|||.|-.+..- -....++. |++...+.-+++.+.. .....|+..+|+.+.+||.+++..+++|+....
T Consensus 48 v~~d~gCGngky~~~~--p~~~~ig~---D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLGVN--PLCLIIGC---DLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred eeeecccCCcccCcCC--Ccceeeec---chhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 8999999999644211 11223333 8887777777655542 566678999999999999999999998887554
Q ss_pred -HHHHHHHHhcccCCcEEEEEe
Q 006662 300 -GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 300 -~~~L~el~RvLKPGG~Liis~ 320 (636)
..+++++.|+|||||...+..
T Consensus 122 R~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEEE
Confidence 689999999999999877764
No 252
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.59 E-value=0.0018 Score=65.66 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=67.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CCC--eEEEE-ecccc-CC-CCCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVP--ALIGV-MASIR-LP-YPSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~~-~d~~~-Lp-f~~~sFDlV~ 287 (636)
++|||||.+.|.-+.+|+.. ..+.+.+ |.+++..+.|+++ |.. +.... +|..+ +. ...++||+|+
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~ti---E~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTI---ERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEE---eCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 48999999999999999875 3345566 8888888888754 332 33443 24322 11 3468999998
Q ss_pred ecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 288 ~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
.- +...+-..++..+.++|||||.+++..
T Consensus 138 ID----adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 ID----ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred Ee----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 63 333333789999999999999999974
No 253
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.59 E-value=0.00016 Score=77.03 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=72.1
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeecc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADS 547 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~ 547 (636)
.+|||+|||.|.++.+|+.. +- .+|+.+|.++..+..+.+. |+ +-+++ |+. ...| .+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~---~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF---AALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh---hhCCCCCccEEEECC
Confidence 57999999999999999764 32 4566778777788777654 44 33333 332 3334 6899998862
Q ss_pred cccc------------CCC---------Cc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcC
Q 006662 548 IFSL------------YKD---------RC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGM 594 (636)
Q Consensus 548 ~fs~------------~~~---------~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~ 594 (636)
=+.. +.. .. ....++-++-++|+|||.+++--..+ ...+.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 1110 000 01 13478999999999999999954333 33577776654
No 254
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.58 E-value=0.00022 Score=75.46 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=62.3
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEeccccC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRL 276 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~L 276 (636)
..++.+.+.+...++. +|||||||+|.++..+++.+..++.+ |+++.+++.++++ + .++.+...|....
T Consensus 23 ~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~av---EiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIAI---EIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEEE---ECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 3556677766655555 89999999999999999987666666 8888888887654 1 3577888887766
Q ss_pred CCCCCCeeEEEecccc
Q 006662 277 PYPSRAFDMAHCSRCL 292 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L 292 (636)
+++ .||+|+++.-.
T Consensus 98 ~~~--~~d~VvaNlPY 111 (294)
T PTZ00338 98 EFP--YFDVCVANVPY 111 (294)
T ss_pred ccc--ccCEEEecCCc
Confidence 553 68999987644
No 255
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.58 E-value=8e-05 Score=74.04 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=65.5
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCcc----chHHHHhhcccchhhccccccCC--CCCccceeeeccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKIN----TLGVIYERGLIGTYQNWCEAMST--YPRTYDLIHADSIFS 550 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~----~l~~~~eRgli~~~~~~ce~~~~--yp~t~Dl~H~~~~fs 550 (636)
.-.|||+|||-|--|.+|++++.=| ...|.+.. ...++-+++|- ++-++..+.. +|..||+|.+..+|-
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~V---tAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDV---TAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EE---EEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeE---EEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEec
Confidence 4589999999999999999998733 33344432 33444556773 3333333433 468999999877776
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
..+ +-.++.++-.|-.-|+|||+++|
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEE
Confidence 554 55789999999999999999988
No 256
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.57 E-value=0.0002 Score=81.39 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC--CEEEEcCcCCchHHHHHHH----HHcCC-CeEEEEeccccC--CCCCCCeeEEEec
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFA----LERGV-PALIGVMASIRL--PYPSRAFDMAHCS 289 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--v~vv~i~p~Dis~a~l~~A----~erg~-~~~~~~~d~~~L--pf~~~sFDlV~~s 289 (636)
...+||||||.|.++..+|... ...+++ +++...+..+ .+.+. ++.+...+...+ -++++++|.|+.+
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGi---E~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGV---EVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEE---EeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 4589999999999999999873 334444 5555544433 23343 455555554322 2778999999997
Q ss_pred ccccccccCh--------HHHHHHHHhcccCCcEEEEEe
Q 006662 290 RCLIPWGQYD--------GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 290 ~~L~h~~~d~--------~~~L~el~RvLKPGG~Liis~ 320 (636)
+.= +|+... ..++..+.++|||||.+.+.+
T Consensus 425 FPD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 425 FPD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 755 775432 479999999999999999984
No 257
>PLN02476 O-methyltransferase
Probab=97.57 E-value=0.0006 Score=71.57 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=66.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CC-C----CCCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LP-Y----PSRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lp-f----~~~sFD 284 (636)
++|||||+|+|..+.+++.. +..++.+ |.++...+.|++. |. .+.+..+++.+ |+ + ..++||
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~Ti---E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVAC---ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 48999999999999999874 3345556 6677777777533 44 36666666533 22 1 136899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+.-. ...+-..++..+.++|+|||.+++..
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 998633 22233688999999999999999873
No 258
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.56 E-value=0.0018 Score=64.23 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecc
Q 006662 202 DAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (636)
Q Consensus 202 ~~~id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~ 273 (636)
+...+.+...+. ...+ .+|||++||+|.++.+++.++. .++.+ |.++.+++.++++ +. .+.+...|.
T Consensus 34 ~~vrea~f~~l~~~~~g--~~vLDLfaGsG~lglea~srga~~v~~v---E~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 34 RVVRELFFNILRPEIQG--AHLLDVFAGSGLLGEEALSRGAKVAFLE---EDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred HHHHHHHHHHHHHhcCC--CEEEEecCCCcHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 333344555443 1233 3899999999999999999975 45555 7787777766543 32 356677776
Q ss_pred cc-CC-C-CC-CCeeEEEecccccccccChHHHHHHHH--hcccCCcEEEEEeC
Q 006662 274 IR-LP-Y-PS-RAFDMAHCSRCLIPWGQYDGLYLIEVD--RVLRPGGYWILSGP 321 (636)
Q Consensus 274 ~~-Lp-f-~~-~sFDlV~~s~~L~h~~~d~~~~L~el~--RvLKPGG~Liis~p 321 (636)
.+ +. + .. ..||+|+.---+.. .....++..+. .+|+++|.+++..+
T Consensus 109 ~~~l~~~~~~~~~~dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 109 LRALKFLAKKPTFDNVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHHhhccCCCceEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 33 22 1 12 24788887553311 12244455443 47899998888754
No 259
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.56 E-value=0.00026 Score=71.14 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=67.7
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----ccchhhccccccCCCCCccceeeecccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAMSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----li~~~~~~ce~~~~yp~t~Dl~H~~~~fs~ 551 (636)
...+|||+|||.|.++.+|++... .|..+|.+++++..+.++- +-..++-....+...+.+||+|.+.++|..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 357999999999999999988754 3677787778888887752 211111111223333588999999877754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+. .-.+..++-++-|++++++.+.+..
T Consensus 140 ~~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YP-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CC-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 33 2356788899999887666555443
No 260
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.55 E-value=7.4e-05 Score=75.17 Aligned_cols=93 Identities=16% Similarity=0.069 Sum_probs=56.9
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccc-cCCCC--Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEA-MSTYP--RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~-~~~yp--~t~Dl~H~~~~ 548 (636)
....|||+|||+|.+++.|++..=-.-.|+.+|..+..+..+.++ |+ .-++-.+.. ...++ ..||+|++++.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 356899999999999999876510001234445555666665443 44 212212221 12222 68999998432
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.+.+.-++-+.|+|||.+|+-
T Consensus 156 ---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 156 ---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------cccccHHHHHhcCcCcEEEEE
Confidence 244556678899999999984
No 261
>PTZ00146 fibrillarin; Provisional
Probab=97.54 E-value=0.00042 Score=73.05 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=61.2
Q ss_pred cceEeeecccchhhhhhhcCC-----CeEEEEecCCCCCccchHHHHhh-cccchhhccccccCCC---CCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYER-GLIGTYQNWCEAMSTY---PRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eR-gli~~~~~~ce~~~~y---p~t~Dl~H~~~ 547 (636)
-.+|||+|||.|+|..+|++. .|+.+-+.|.-.. +++.++.+| +++.+..|-+... .| +.++|+|-++-
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEEEEeC
Confidence 468999999999999999875 2565544432221 466666665 5555555544321 12 25789876543
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
. + .=....+++|+.|+|||||+|+|.
T Consensus 211 a----~-pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 211 A----Q-PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred C----C-cchHHHHHHHHHHhccCCCEEEEE
Confidence 2 1 112235677999999999999994
No 262
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.54 E-value=0.00031 Score=77.37 Aligned_cols=138 Identities=10% Similarity=0.141 Sum_probs=88.8
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cc-cchhh-ccccccCCCCCccceeeeccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
.+|||+|||.|.++.+|+.. +- .+|+.+|.++.+++.+.+. |+ +.+++ ||.+...+-...||+|-++-=+-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 37999999999999888753 32 3566777777888877664 32 22333 44432111124799988854321
Q ss_pred cC---------------------CCCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCCCCC
Q 006662 551 LY---------------------KDRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPR 608 (636)
Q Consensus 551 ~~---------------------~~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~ 608 (636)
.. .+.- .+..++-+.-+.|+|||++++--..+....+++++++..|.....-.+ -.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD--l~ 408 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD--LA 408 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--CC
Confidence 00 0010 123677788899999999999766677788999988888865422111 22
Q ss_pred CcceEEEEEec
Q 006662 609 QREKILFANKK 619 (636)
Q Consensus 609 ~~~~~l~~~K~ 619 (636)
+.++++++++.
T Consensus 409 G~dR~v~~~~~ 419 (423)
T PRK14966 409 GLDRVTLGKYM 419 (423)
T ss_pred CCcEEEEEEEh
Confidence 57889988753
No 263
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.54 E-value=8.3e-05 Score=73.52 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=72.8
Q ss_pred hhccCCCCCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-Cccceeee
Q 006662 468 DYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHA 545 (636)
Q Consensus 468 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~ 545 (636)
..-+.+ ..+|||+|||-|.+-++|.+ ++|-+ ..++.....+....+||+-=+-+|.=+.+..|| .+||.+=.
T Consensus 8 ~~~I~p---gsrVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 8 AEWIEP---GSRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HHHcCC---CCEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 333555 58999999999999999987 56633 444555567899999999644448889999998 99998765
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+...... -..+.+|.||-|| |...|++
T Consensus 82 sqtLQ~~---~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 82 SQTLQAV---RRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HhHHHhH---hHHHHHHHHHHHh---cCeEEEE
Confidence 3333322 2346899999666 6688887
No 264
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.53 E-value=0.00016 Score=74.51 Aligned_cols=92 Identities=23% Similarity=0.418 Sum_probs=72.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccc-hhhccccccCCCCCccceeeeccccccCCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIG-TYQNWCEAMSTYPRTYDLIHADSIFSLYKD 554 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~-~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~ 554 (636)
+..++||+|||-|+.-+.|+.. .-+|..++.+..|.....+||+-= ...+|-+. +..||+|-|-.|. +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 6788999999999999999663 234566677778999999999921 22245532 4679999996666 7
Q ss_pred CcCHH-HHHHHHhhcccCCcEEEEE
Q 006662 555 RCEME-DVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 555 ~c~~~-~~l~e~dRiLrPgG~~i~~ 578 (636)
||+-+ .+|-+|-+-|+|+|.+|+.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 89987 7888999999999999996
No 265
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.52 E-value=0.00044 Score=69.54 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=67.6
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CC-----CCCCCee
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LP-----YPSRAFD 284 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lp-----f~~~sFD 284 (636)
++|||||+++|.-+.+|++. +..++.+ |.++...+.|++. +. .+.+..++... ++ .+.+.||
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~ti---E~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTI---EIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEE---ESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEe---cCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 48999999999999999975 4566666 6777777777532 33 46777776543 12 1246899
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+.-. ...+-..++..+.++|+|||.+++..
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 998743 22333678899999999999999984
No 266
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.52 E-value=0.00031 Score=78.55 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=58.3
Q ss_pred cEEEEeCCCCcHHHHHHhhcC------CEEEEcCcCCchHHHHHHH----HHcC--CCeEEEEeccccCCCCCCCeeEEE
Q 006662 220 RTAIDTGCGVASWGAYLMSRN------ILAVSFAPRDTHEAQVQFA----LERG--VPALIGVMASIRLPYPSRAFDMAH 287 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~------v~vv~i~p~Dis~a~l~~A----~erg--~~~~~~~~d~~~Lpf~~~sFDlV~ 287 (636)
..|||||||+|-+....++.+ +.+..+ +-++.+.... .+++ ..+.+...+...+..+. .+|+|+
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAV---Ekn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIV 263 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAV---EKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIV 263 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEE---ESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEE---cCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEE
Confidence 489999999998876665542 444455 4443333222 3333 35888989988887664 899999
Q ss_pred ecccccccccCh--HHHHHHHHhcccCCcEEE
Q 006662 288 CSRCLIPWGQYD--GLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 288 ~s~~L~h~~~d~--~~~L~el~RvLKPGG~Li 317 (636)
+-..- .+..+. ...|....|.|||||.++
T Consensus 264 SElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 84322 233222 567889999999999875
No 267
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.51 E-value=9.9e-05 Score=72.93 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=61.1
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCCCc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRC 556 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c 556 (636)
.+|||+|||.|.+..+|.+..- .++..+|.++.++..+.++|+--...|..+.+..++ ++||+|-++++|....
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 4799999999999999975421 134555666678888888876222223333344465 8999999988876443
Q ss_pred CHHHHHHHHhhcccC
Q 006662 557 EMEDVLLEMDRILRP 571 (636)
Q Consensus 557 ~~~~~l~e~dRiLrP 571 (636)
+...+|.||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 457888888777654
No 268
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.51 E-value=8.6e-05 Score=75.40 Aligned_cols=115 Identities=22% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccC--------CCCCccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--------TYPRTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~--------~yp~t~Dl~H~~ 546 (636)
...|.++|+|||.| +|+..+.-- --+|+.+|.++.||+++.+. -.-+||.=-.+++ -=+.+-|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhh
Confidence 34669999999999 777665542 36788899998999966544 4345543333333 236899986541
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEE-E---EeCHHHHHHHHHHHhcCCCc
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVI-I---RDDVDILVKIKSITDGMEWE 597 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i-~---~d~~~~~~~~~~~~~~~~W~ 597 (636)
-- -|=|+++..+-++-|||||.|-+| + +|+.-...++..+..+++|+
T Consensus 108 qa----~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QA----VHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hh----HHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 00 123889999999999999988222 1 44444555666666666664
No 269
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00043 Score=72.83 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccch
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGT 525 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~ 525 (636)
...||..+...+. .. +..... +|||||||+|--|.+|+...- ..+|+.+|-++.-+.++.+ .|+.-+
T Consensus 92 Pr~dTe~Lve~~l---~~---~~~~~~--~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 92 PRPDTELLVEAAL---AL---LLQLDK--RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred cCCchHHHHHHHH---Hh---hhhcCC--cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 3567888877765 11 122122 999999999999999987622 1577888887766766533 354221
Q ss_pred hhccccccCCCCCccceeeecc----------------------ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH
Q 006662 526 YQNWCEAMSTYPRTYDLIHADS----------------------IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI 583 (636)
Q Consensus 526 ~~~~ce~~~~yp~t~Dl~H~~~----------------------~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~ 583 (636)
+.--+.-|+..+..||+|-+|= +|+.....--+..++-+..++|+|||++++.-..+.
T Consensus 163 ~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 163 LVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred EEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 1111134555555788765421 222110111234789999999999999999988777
Q ss_pred HHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 584 LVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 584 ~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
...|+++.....+ ...+.....-.+.+.+.++++
T Consensus 243 ~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 243 GEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 8899999888886 332222333335667766654
No 270
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.43 E-value=0.0002 Score=75.88 Aligned_cols=101 Identities=15% Similarity=0.276 Sum_probs=63.7
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHH----hhcccchhhccccccC--CCCCccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMS--TYPRTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgli~~~~~~ce~~~--~yp~t~Dl~H~~~ 547 (636)
...+.|||+|||.|.++.++.++ |- .+++..|.+ .++..+. +.|+-.-++-.+..|. .+|. +|++-..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNLP-GAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEecH-HHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEh
Confidence 45789999999999999988765 32 133333443 5665543 3465332222233332 3554 79866555
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 580 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 580 (636)
++-.+.. -....+|-++-|.|||||.++|-|.
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4433322 1335799999999999999999863
No 271
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.42 E-value=0.0018 Score=67.80 Aligned_cols=141 Identities=23% Similarity=0.284 Sum_probs=91.2
Q ss_pred CCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHH----HHcCCC--eEEEEeccccCC-CC--CCCeeE
Q 006662 216 DGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFA----LERGVP--ALIGVMASIRLP-YP--SRAFDM 285 (636)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A----~erg~~--~~~~~~d~~~Lp-f~--~~sFDl 285 (636)
.+..-+||||.||.|......+.... ...++.-.|.++..++.. +++|.. +.|...|+.... +. .-..++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 35566999999999988777766521 122444456676666544 466654 378877754421 11 345799
Q ss_pred EEecccccccccCh--HHHHHHHHhcccCCcEEEEEeCCCCc---------cccc--cCCCCchhhhHHHHHHHHHHHHH
Q 006662 286 AHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNW---------ESHW--KGWNRTTEDLKSEQNGIETIARS 352 (636)
Q Consensus 286 V~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p~~~w---------~~~~--~~W~~t~e~l~~~~~~ie~la~~ 352 (636)
++.+..++-+.++. ...+.-+.+.|.|||+++.++-|.+- ..|. .+|--- ...+.++.++++.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEA 288 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHH
Confidence 99998886666544 56789999999999999999743221 1111 123211 1235668888888
Q ss_pred hceEeecc
Q 006662 353 LCWKKLIQ 360 (636)
Q Consensus 353 l~Wk~v~~ 360 (636)
.+++++.+
T Consensus 289 aGF~K~~q 296 (311)
T PF12147_consen 289 AGFEKIDQ 296 (311)
T ss_pred cCCchhhh
Confidence 88887664
No 272
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.42 E-value=0.0014 Score=65.74 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC---Cccceeeeccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP---RTYDLIHADSIFS 550 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp---~t~Dl~H~~~~fs 550 (636)
...-.|=|||||-|-.|+++.+. .|.-.-+++.... ++. |.. ..-| .+.|++-+ .
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-----------Vta-----cdi-a~vPL~~~svDv~Vf----c 129 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-----------VTA-----CDI-ANVPLEDESVDVAVF----C 129 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT-----------EEE-----S-T-TS-S--TT-EEEEEE----E
T ss_pred CCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC-----------EEE-----ecC-ccCcCCCCceeEEEE----E
Confidence 34568999999999999887643 5666666665332 111 211 2233 78887543 2
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEecC
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---ILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKY 620 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~~ 620 (636)
+.-=.-+..+.+.|..|||||||.++|.+-.. .++...+.++++..+....|..+ +--.++..+|.-
T Consensus 130 LSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~~F~~f~F~K~~ 199 (219)
T PF05148_consen 130 LSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---KHFVLFEFKKIR 199 (219)
T ss_dssp S---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---TTEEEEEEEE-S
T ss_pred hhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---CeEEEEEEEEcC
Confidence 22223467899999999999999999986443 33455566888888888766553 345666777765
No 273
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.41 E-value=0.00033 Score=76.13 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=74.4
Q ss_pred EEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
.++|+|||.|....+++... ....++ +.++.++..+.+. ++ ...+...+....|++++.||.+.+..+..
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl---~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGL---DNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCC---CcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 79999999999999988763 334444 6666655544322 11 23446678888999999999999999996
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
|. ++...++.|++|+++|||+++...
T Consensus 190 ~~-~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 190 HA-PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cC-CcHHHHHHHHhcccCCCceEEeHH
Confidence 65 488999999999999999999873
No 274
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.38 E-value=0.00065 Score=72.61 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~erg-~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
....+|+|.|.|+.+..+... .+.++.+ ....+-.++... ..+....+|...- .|. -|+|++-++++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~inf-----dlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINF-----DLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeec-----CHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccC
Confidence 458999999999999999886 3455544 333333333322 3445554554333 443 3699999999999
Q ss_pred ccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
.++. ..+|+++...|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9666 8999999999999999999865
No 275
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.38 E-value=0.00023 Score=71.20 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=56.1
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHh----hccc---chhh-ccccccCCCCCccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYE----RGLI---GTYQ-NWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~e----Rgli---~~~~-~~ce~~~~yp~t~Dl~H~ 545 (636)
...|||+|||+|.+++.|.+. +- .|+.+|..++++..+.+ .|+- -+++ |..+.+. -..+||.|.+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~ 148 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIV 148 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEE
Confidence 568999999999999887643 11 24444555556555443 3442 2222 2222221 1268999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
++.+ +.+.-|+-|+|+|||.+++-.
T Consensus 149 ~~~~---------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAA---------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCc---------chhhHHHHHhcCcCcEEEEEE
Confidence 6543 233357889999999999853
No 276
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.38 E-value=0.00031 Score=70.35 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC--Cccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp--~t~Dl~H~~ 546 (636)
....+|||+|||+|.+++.|.+..- .|..+|..++.+..+.++ |+ +-+.+ ...+..+| ..||+|.++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEc
Confidence 3467899999999999987766521 345556555666666554 44 22222 12234444 689999885
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
..+ +.+.-++-+.|+|||.+++.
T Consensus 152 ~~~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 152 AAA---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCc---------hhhhHHHHHhcCCCcEEEEE
Confidence 432 34455677899999999985
No 277
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0015 Score=64.42 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=56.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
+++|+|+|||||.++...+-.|. .++.+ |+.+.+++.++++ +..+.+...|..+.. ..||.++.+--+-
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~v---diD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAV---DIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEE---ecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCc
Confidence 44899999999999888887763 44455 6677777777654 336888888876654 5688999877553
Q ss_pred ccccCh-HHHHHHHHhc
Q 006662 294 PWGQYD-GLYLIEVDRV 309 (636)
Q Consensus 294 h~~~d~-~~~L~el~Rv 309 (636)
-+.... ..++....++
T Consensus 120 ~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 120 SQRRHADRPFLLKALEI 136 (198)
T ss_pred cccccCCHHHHHHHHHh
Confidence 332222 3444444444
No 278
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00044 Score=69.31 Aligned_cols=147 Identities=15% Similarity=0.258 Sum_probs=109.4
Q ss_pred HhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcc-----cchhhccccccCCCCCc
Q 006662 466 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMSTYPRT 539 (636)
Q Consensus 466 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----i~~~~~~ce~~~~yp~t 539 (636)
.++..+.. .+.++|.|+|||.|.--+.|+.+ |. --+..+|.+..||..+.+|.. .|..++||-. +.
T Consensus 21 dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~ 92 (257)
T COG4106 21 DLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QP 92 (257)
T ss_pred HHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cc
Confidence 34444555 77999999999999998888887 33 346788999999999999987 5778888832 56
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--eCHH--HHHHHHHHHhcCCCceEEeccC--CCCC-----
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--DDVD--ILVKIKSITDGMEWEGRIADHE--NGPR----- 608 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~--~~~~~~~~~~~~~W~~~~~~~e--~~~~----- 608 (636)
.|+|-++-+|.-..+. ..+|-.+=--|+|||.+-+. |+.+ ...-|.+.++..-|...+-+.- -.+.
T Consensus 93 ~dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 93 TDLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred cchhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 8999999999877666 66777777789999999887 4333 6678889999889987754311 0110
Q ss_pred -------CcceEEEEEecCCCC
Q 006662 609 -------QREKILFANKKYWTA 623 (636)
Q Consensus 609 -------~~~~~l~~~K~~w~~ 623 (636)
...+|=||.+.|-..
T Consensus 170 Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 170 YYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHHHhCcccceeeeeeeecccc
Confidence 136777888877665
No 279
>PLN02823 spermine synthase
Probab=97.33 E-value=0.0016 Score=70.24 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEecccc-CCCCCCCeeEE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPSRAFDMA 286 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~-Lpf~~~sFDlV 286 (636)
.+++||.||+|.|..+.++++.. +. .+...|++++.++.|++.. ..+.+...|... +....++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~--~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVE--KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 35689999999999999988852 21 2222377888888887542 345666666543 23345789999
Q ss_pred EecccccccccC------hHHHHH-HHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQY------DGLYLI-EVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d------~~~~L~-el~RvLKPGG~Liis~ 320 (636)
++-. ..++... ...+++ .+.+.|+|||.+++..
T Consensus 181 i~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9742 2222111 146777 8999999999998763
No 280
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.013 Score=61.97 Aligned_cols=128 Identities=17% Similarity=0.245 Sum_probs=76.8
Q ss_pred eEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHH----hhcccc--hhhccccccCCCCCccceeeecccccc
Q 006662 479 NLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIY----ERGLIG--TYQNWCEAMSTYPRTYDLIHADSIFSL 551 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~----eRgli~--~~~~~ce~~~~yp~t~Dl~H~~~~fs~ 551 (636)
+|||+|||+|-.|+.|++.. . ..+.-+|.+..-++.+. +-++-+ +++ ..-++.-...||+|-+|==|-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~--~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~--s~~~~~v~~kfd~IisNPPfh~ 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQ--AKLTLVDVNARAVESARKNLAANGVENTEVWA--SNLYEPVEGKFDLIISNPPFHA 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCC--CeEEEEecCHHHHHHHHHhHHHcCCCccEEEE--ecccccccccccEEEeCCCccC
Confidence 99999999999999998763 2 12222333312222221 122322 232 1334444469999887776664
Q ss_pred CCCCc--CHHHHHHHHhhcccCCcEEEEEeC--HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 552 YKDRC--EMEDVLLEMDRILRPEGSVIIRDD--VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 552 ~~~~c--~~~~~l~e~dRiLrPgG~~i~~d~--~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
.+.-- -.+.++.+.-+-|++||-++|=-+ ..+-.+|+++.. ++...... ++-+|+=++|
T Consensus 237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k 299 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKK 299 (300)
T ss_pred CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEec
Confidence 43221 123789999999999999888543 346667777666 44443322 3566776666
No 281
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.30 E-value=0.0014 Score=64.44 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=69.5
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCE---------EEEcCcCCchHHHHHHHHHc----CC--Ce
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NIL---------AVSFAPRDTHEAQVQFALER----GV--PA 266 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~---------vv~i~p~Dis~a~l~~A~er----g~--~~ 266 (636)
....+..+....++. .+||--||+|.+..+.+.. ++. .++. |+++.+++.|+++ +. .+
T Consensus 16 lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~---Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 16 LAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGS---DIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEE---ESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEec---CCCHHHHHHHHHHHHhcccCCce
Confidence 333455555555555 8999999999999776654 333 3344 8888888877654 33 36
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHhcccCCcEEEEE
Q 006662 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 267 ~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPGG~Liis 319 (636)
.+.+.|...+++.++++|+|+++.-+-.-.... ..+++++.++|++...+++.
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 788889999998888999999976431111111 35788999999994444444
No 282
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.26 E-value=0.0014 Score=63.85 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=57.3
Q ss_pred HHHHHHhhc-cCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHcCCCeEEEEecc------c
Q 006662 205 IDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMAS------I 274 (636)
Q Consensus 205 id~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~------~ 274 (636)
+..+.+..+ ..++...+|||+||++|.|+..+++++ ..+++++.....+ ...+....+|. .
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~---------~~~~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP---------LQNVSFIQGDITNPENIK 79 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----------TTEEBTTGGGEEEEHSH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc---------ccceeeeecccchhhHHH
Confidence 344555555 444455799999999999999999986 4555553322210 01122222221 1
Q ss_pred cCC--C--CCCCeeEEEecccccccccC----h-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLP--Y--PSRAFDMAHCSRCLIPWGQY----D-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lp--f--~~~sFDlV~~s~~L~h~~~d----~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
.+. + ..+.||+|+|-.+. ....+ . ...+.-+...|+|||.+++-..
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111 1 12689999985532 11111 1 1344455678999999998764
No 283
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.23 E-value=0.00032 Score=68.06 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=69.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccccCCCC-Cccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||+|-.+.+|+++.-- ..|.-+|.++..+..+.+ .++-.+.-.++..+...+ ..||+|=++-=|..
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 567999999999999999875210 124555666566666644 233111112334444454 99999888655433
Q ss_pred CCC--CcCHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHh
Q 006662 552 YKD--RCEMEDVLLEMDRILRPEGSVII--RDDVDILVKIKSITD 592 (636)
Q Consensus 552 ~~~--~c~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~ 592 (636)
... ...+..++.+.-++|+|||.+++ +.....-..++++..
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 221 12357899999999999998854 434434444555554
No 284
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0018 Score=68.43 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=78.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc---cc-hhhccccccCCCC--Cccceeeecccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IG-TYQNWCEAMSTYP--RTYDLIHADSIF 549 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---i~-~~~~~ce~~~~yp--~t~Dl~H~~~~f 549 (636)
+.++|||+|||.|-+|-|.++.+. --|+.+|.-+-.++++.|--. +. +.+.=+-..+..| +.||+|-||=|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-
Confidence 389999999999999988888765 345666766667777776332 11 1111111123344 58999887211
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceEEeccC
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e 604 (636)
++ -+..+.=++-|.|||||++|++--. +..+.|.+.+.+-.|++.-+...
T Consensus 239 ----A~-vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 ----AE-VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ----HH-HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 00 1124555778999999999999633 35677888887778877655444
No 285
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.21 E-value=0.0019 Score=66.58 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=83.6
Q ss_pred CcceEeeecccchhhhhhhcCC-C-eEEEEecCCCCCccchHHHHhhcc--------cchhh-ccccccCCCC-Ccccee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYERGL--------IGTYQ-NWCEAMSTYP-RTYDLI 543 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eRgl--------i~~~~-~~ce~~~~yp-~t~Dl~ 543 (636)
....|||+|||.|..+-.|+++ + + -++.++-.+.....+ .|.+ |-++| |.-+-....+ .+||+|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A-~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMA-QRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHH-HHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 3889999999999998888877 3 2 223333332233222 2222 34444 2111112223 469998
Q ss_pred eeccccc---------------cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE
Q 006662 544 HADSIFS---------------LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 544 H~~~~fs---------------~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
=|+==|= .++..|++++++-=.-++|+|||++.+=-+.+.+..|.+++++++|..+
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 8754432 3456688999999999999999999999999999999999999999987
No 286
>PRK04457 spermidine synthase; Provisional
Probab=97.20 E-value=0.0013 Score=68.44 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=80.2
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh-cccc------hhh-ccccccCCCCCccceeee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER-GLIG------TYQ-NWCEAMSTYPRTYDLIHA 545 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR-gli~------~~~-~~ce~~~~yp~t~Dl~H~ 545 (636)
...++|||+|||.|.++.+|.+. |- +.|.-+|..+..+.++.+. ++.+ +.+ |.-+-+...|.+||+|=+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34678999999999999988654 32 3444455555688887765 2221 111 211223345678999977
Q ss_pred ccccccC-C-CCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 546 DSIFSLY-K-DRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 546 ~~~fs~~-~-~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
+ .|... . .......++.++-++|+|||.+++- .+......++.+.+.+.-.+.+...+. ....|+++.|
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 5 34321 1 1122368999999999999999983 222222223333333332333333221 1347888876
No 287
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.18 E-value=0.00063 Score=72.06 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=72.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccccCCCC-Cccceeeecccccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSL 551 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~ 551 (636)
..+|||+|||+|-.|-+-++.+- -.|+.+|..+..+..+.+ -|+-.-+. . ......+ ..||+|-||=+..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v-~~~~~~~~~~~dlvvANI~~~- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-V-SLSEDLVEGKFDLVVANILAD- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-E-SCTSCTCCS-EEEEEEES-HH-
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-E-EEecccccccCCEEEECCCHH-
Confidence 46999999999977655444432 223444544444444443 34322111 1 1122334 8899988832222
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
-+..++-++.+.|+|||++|++-- .+....|.+.++. .|++.....+ +.-..|+++|+
T Consensus 237 -----vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 -----VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp -----HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred -----HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 123566678999999999999842 2345666676666 7776544433 34567777775
No 288
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.18 E-value=0.0019 Score=64.67 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=73.5
Q ss_pred ccCCceecCCCCCCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhh--cCCEEEEcCcCCchHHHHHHHH
Q 006662 183 FQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFAL 260 (636)
Q Consensus 183 ~~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~~v~vv~i~p~Dis~a~l~~A~ 260 (636)
..|-.|.+.-...+|..+...--.++.+.+ .+++ +|||+-||.|.|+..+++ +...++.+ |+++.+++..+
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~---d~Np~a~~~L~ 142 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTERRRIANLV--KPGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAV---DLNPDAVEYLK 142 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT-SSEEEEE---ES-HHHHHHHH
T ss_pred eCCEEEEEccceEEEccccHHHHHHHHhcC--Ccce--EEEEccCCccHHHHHHhhhcCccEEEEe---cCCHHHHHHHH
Confidence 344445544455666666554445666553 4455 999999999999999998 56566666 77777766554
Q ss_pred H----cCC--CeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEE
Q 006662 261 E----RGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWI 317 (636)
Q Consensus 261 e----rg~--~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Li 317 (636)
+ +++ .+....+|...+.- .+.||-|+++. +.....+|..+.+++|+||.+-
T Consensus 143 ~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 143 ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 3 333 35667788776654 78999998854 2233468899999999999863
No 289
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.18 E-value=0.00055 Score=69.21 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=61.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHH-Hhhcccch--------------hhccccccCCCC----
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI-YERGLIGT--------------YQNWCEAMSTYP---- 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~eRgli~~--------------~~~~ce~~~~yp---- 537 (636)
..+|||+|||.|-.|.+|++++. +|+.+|.++..+..+ .+.|+-.. +.-+|..+..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 46999999999999999999865 556666665555553 34454211 111344443333
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.+||+|=..++|-.. .....+.++-.|-|.|||||++++
T Consensus 112 ~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 112 GPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 346654443333211 334457899999999999997544
No 290
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.14 E-value=0.00054 Score=72.67 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=66.1
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh---ccc-----chhhccccccCCCCCcc----c-ee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GLI-----GTYQNWCEAMSTYPRTY----D-LI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gli-----~~~~~~ce~~~~yp~t~----D-l~ 543 (636)
..+|||+|||+|.++..|++.-.=..+++++|.+..+|..+.++ ... ++..|.++.+ .+|..+ + ++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEE
Confidence 46799999999999998877611024689999999999998876 221 1222333322 233333 2 34
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.+...|.... .-+...+|-++-+.|+|||.++|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4434444432 334568999999999999999985
No 291
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0055 Score=60.12 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=67.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQF----ALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
...+||||||+|..+..|++. ++..+.. |+++.+.+. |+.++..+...+.|...- +..++.|+++.+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~lat---DiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLAT---DINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEe---cCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCC
Confidence 447999999999999999886 4455555 888777665 444455555555554322 23388999998765
Q ss_pred ccccccCh--------------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYD--------------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~--------------------~~~L~el~RvLKPGG~Liis~p 321 (636)
..+-.+++ .+++..+..+|.|.|.|++..-
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 53322221 2567778888999999999864
No 292
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.13 E-value=0.0063 Score=65.40 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=64.3
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+.++|||||++|.|+..|++++..++++ |..+ +.........+.....+..+...+.+.+|.++|- ...
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AV---D~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcD-----mve 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAV---DNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCD-----MVE 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEE---echh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEe-----ccc
Confidence 34599999999999999999999888877 5332 2222223345666666655543336789999994 345
Q ss_pred ChHHHHHHHHhcccCC--cEEEEE
Q 006662 298 YDGLYLIEVDRVLRPG--GYWILS 319 (636)
Q Consensus 298 d~~~~L~el~RvLKPG--G~Liis 319 (636)
.|...+.-|.++|..| ..+|+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEE
Confidence 7788888889998776 345554
No 293
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.13 E-value=0.0014 Score=69.18 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=73.9
Q ss_pred hhhccCCCCCcceEeeecccchhhhhhhcCCCe-EEEEecCCCCCccchHHHHhhcccchh---hcc--c-cccCCCCCc
Q 006662 467 VDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVIYERGLIGTY---QNW--C-EAMSTYPRT 539 (636)
Q Consensus 467 ~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~eRgli~~~---~~~--c-e~~~~yp~t 539 (636)
+.+.|.+ =+.|.|||+|||-|-+...|+..+- .|+-+=|.... .+|+-+-+-++|.- |-. . |.++. ..+
T Consensus 107 l~p~l~~-L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~ 182 (315)
T PF08003_consen 107 LLPHLPD-LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGA 182 (315)
T ss_pred HHhhhCC-cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhCCCccEEEcCcchhhccc-cCC
Confidence 3333433 4578999999999999999988865 45555554433 56666666666521 111 1 33444 589
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
||+|-|.||+= ||=+--+.|.++-..|||||-+|+-
T Consensus 183 FDtVF~MGVLY---Hrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 183 FDTVFSMGVLY---HRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred cCEEEEeeehh---ccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 99999999875 3445578999999999999999984
No 294
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.12 E-value=0.0006 Score=69.17 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=65.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHH-HHhhcccch--------------hhccccccCCC---C-
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV-IYERGLIGT--------------YQNWCEAMSTY---P- 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~-~~eRgli~~--------------~~~~ce~~~~y---p- 537 (636)
-.+|||.|||.|--+.+|++++. +|+.+|.++.-++. +.++|+-.. ++-++..+..+ +
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35899999999999999999976 56777777666664 356777422 11234433333 2
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
.+||+|--.++|... .....+.++-.|.++|+|||.+++
T Consensus 115 ~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 367776655544432 333457899999999999996444
No 295
>PRK00536 speE spermidine synthase; Provisional
Probab=97.09 E-value=0.0049 Score=64.26 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=65.3
Q ss_pred CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccCCCCCCCeeEE
Q 006662 216 DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRLPYPSRAFDMA 286 (636)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~Lpf~~~sFDlV 286 (636)
.+.+++||=||.|.|..++++++..-.++ ..|+++..++.+++-. +.+.+.. .. ..-..++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~---mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVD---FVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeE---EEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEE
Confidence 44567999999999999999999853322 2377888888887632 2233332 11 11123689999
Q ss_pred EecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+.-.. .+..+.+.+.|.|+|||.++...
T Consensus 144 IvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 144 ICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 97432 33678899999999999999974
No 296
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.09 E-value=0.0023 Score=67.74 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---------CCEEEEcCcCCchHHHHHHHHHc----CC---C
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---------NILAVSFAPRDTHEAQVQFALER----GV---P 265 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------~v~vv~i~p~Dis~a~l~~A~er----g~---~ 265 (636)
....+.+.+++....+. +|||-.||+|.|...+.+. .....++ |+++.+...|.-+ +. .
T Consensus 32 ~~i~~l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~---ei~~~~~~la~~nl~l~~~~~~~ 106 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGI---EIDPEAVALAKLNLLLHGIDNSN 106 (311)
T ss_dssp HHHHHHHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEE---ES-HHHHHHHHHHHHHTTHHCBG
T ss_pred HHHHHHHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEee---cCcHHHHHHHHhhhhhhcccccc
Confidence 55667777777544444 8999999999998887762 3333344 7777777766432 21 1
Q ss_pred eEEEEeccccCCCC--CCCeeEEEeccccccc--cc-----------------Ch-HHHHHHHHhcccCCcEEEEEeC
Q 006662 266 ALIGVMASIRLPYP--SRAFDMAHCSRCLIPW--GQ-----------------YD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 266 ~~~~~~d~~~Lpf~--~~sFDlV~~s~~L~h~--~~-----------------d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
..+...|....+.. .+.||+|+++.-+... .. .. ..++..+.+.|++||++++..|
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 24566665544432 4789999996544222 00 00 2578889999999999988876
No 297
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.04 E-value=0.0024 Score=66.05 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=63.9
Q ss_pred cEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEecccc-CCC------CCCCe
Q 006662 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR-LPY------PSRAF 283 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~-Lpf------~~~sF 283 (636)
++|||||+++|.-+.+|+.. +..++.+ |.++...+.|++. |. .+.+..++..+ |+- ..++|
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~ti---E~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAM---DINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEE---eCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 48999999999999988864 3455566 6666666666533 42 36666666433 221 13689
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
|+|+.-. ....-..++..+.++|+|||.+++.
T Consensus 158 D~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9998743 2222357888889999999998886
No 298
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.03 E-value=0.00063 Score=67.84 Aligned_cols=114 Identities=21% Similarity=0.236 Sum_probs=71.1
Q ss_pred cceEeeecccchhhhhhhcCC-CeEEEEecCCCCCcc----chHHHHhhcccchhhccccccC---C-C-CCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKIN----TLGVIYERGLIGTYQNWCEAMS---T-Y-PRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~----~l~~~~eRgli~~~~~~ce~~~---~-y-p~t~Dl~H~~ 546 (636)
-..+||+|||.|.|..+|+.. |= .|++.++...+ .+..+.++||--+.--.|.+.. . + |.+.|.||.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE-
Confidence 339999999999999999753 11 35555555433 4445556666222222223332 1 2 489998887
Q ss_pred ccccc-------CCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC
Q 006662 547 SIFSL-------YKDRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGM 594 (636)
Q Consensus 547 ~~fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~ 594 (636)
.|.. .+.|=--+..|-++-|+|+|||.+.+ ||..++.+.+.+.+...
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 5551 12332235899999999999999998 57777888888876664
No 299
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.03 E-value=0.0035 Score=68.84 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=66.4
Q ss_pred cEEEEeCCCCcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHc----CCC-eEEEEeccccCCCCCCCeeEEEecccc
Q 006662 220 RTAIDTGCGVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALER----GVP-ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~er----g~~-~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
.+|||++||+|.++..++.. +. .++.+ |+++.+++.++++ +.. ..+...|...+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~---Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLN---DINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--
Confidence 38999999999999999875 42 34444 8888888877643 332 4466666654321145799998853
Q ss_pred cccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 293 IPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 293 ~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ ..+..++....+.+++||++.++.
T Consensus 134 --~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 --F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 244678888788899999999984
No 300
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.02 E-value=0.0012 Score=70.91 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=70.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCC---CCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY---PRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~y---p~t~Dl~H~~~~f 549 (636)
...|||.+||+|++...+...+ .+|+..|....++..+.+. |+-. ++--+..+... +.+||+|-++-=|
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCC
Confidence 5689999999999966554443 2556667776677654432 4432 12112222223 3689999886333
Q ss_pred cc---CCC---CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCC
Q 006662 550 SL---YKD---RCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEW 596 (636)
Q Consensus 550 s~---~~~---~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W 596 (636)
.. ... ......+|-|+-|+|+|||++++--..+ ..++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 21 111 1235789999999999999988764332 144566777777
No 301
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.02 E-value=0.0036 Score=68.01 Aligned_cols=110 Identities=10% Similarity=-0.011 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccc
Q 006662 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASI 274 (636)
Q Consensus 200 g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~ 274 (636)
..+.+++.+.+.+...+ . +|||++||+|.++..|++....++++ |+++.+++.|+++ +. ++.+...|..
T Consensus 182 ~~~~l~~~v~~~~~~~~-~--~vlDl~~G~G~~sl~la~~~~~v~~v---E~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 182 VNIKMLEWACEVTQGSK-G--DLLELYCGNGNFSLALAQNFRRVLAT---EIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred HHHHHHHHHHHHhhcCC-C--cEEEEeccccHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 34555556666553222 2 69999999999999998875556666 8888888888754 33 4677777765
Q ss_pred cCC--------C---C-----CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLP--------Y---P-----SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lp--------f---~-----~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
++- + . ...||+|+.----.. -...++..+. +|++.++++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G---~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG---LDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHHHHhhccccccccccccccCCCCEEEECCCCCC---CcHHHHHHHH---cCCcEEEEEcC
Confidence 421 1 0 113798887442211 1134555554 48899999843
No 302
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.02 E-value=0.0032 Score=65.38 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=47.7
Q ss_pred CeeEEEecccccccccCh---HHHHHHHHhcccCCcEEEEEeC-CCCccccccCCCCchhhhHHHHHHHHHHHHHhceEe
Q 006662 282 AFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP-PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 357 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~Liis~p-~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~ 357 (636)
.||+|++++||+-...+. ..+++++.++|||||.|++.+- ...+..-. ......+....+.+++..+..++..
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG---~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG---GHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET---TEEEE---B-HHHHHHHHHHTTEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC---CEecccccCCHHHHHHHHHHcCCEE
Confidence 599999999998877777 5789999999999999999853 11211100 0112233334455777777777754
Q ss_pred ec
Q 006662 358 LI 359 (636)
Q Consensus 358 v~ 359 (636)
..
T Consensus 235 ~~ 236 (256)
T PF01234_consen 235 ED 236 (256)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 303
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.98 E-value=0.0023 Score=62.36 Aligned_cols=138 Identities=18% Similarity=0.298 Sum_probs=71.0
Q ss_pred CCcceEeeecccchhhhhhhcCCC-----eEEEEecCCCCCccchHHHHhhcccc---hhhccccccCCCCCccceeeec
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-----LWVMNTVPVEAKINTLGVIYERGLIG---TYQNWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-----v~~mnv~~~~~~~~~l~~~~eRgli~---~~~~~ce~~~~yp~t~Dl~H~~ 546 (636)
+...+|||+||+.|||..++.++. |+.+-+.|.+.. .....+ +|=+- +.....+.+..-.+.+|+|-||
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-QNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-cceeee--ecccchhhHHHhhhhhccccccCcceeccc
Confidence 678999999999999999999886 345555544211 111111 22110 0101111111111589999999
Q ss_pred cccccCCCC---cC--HH---HHHHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCCceEEeccCCCCCCcceE
Q 006662 547 SIFSLYKDR---CE--ME---DVLLEMDRILRPEGSVIIR-----DDVDILVKIKSITDGMEWEGRIADHENGPRQREKI 613 (636)
Q Consensus 547 ~~fs~~~~~---c~--~~---~~l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~ 613 (636)
+.+.....+ .. +. ..|.=+-..|||||.+|+. +..+.+..++...+..++-. -.-.++...|.-
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~K---p~~sr~~s~E~Y 175 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVK---PPSSRSESSEEY 175 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE----TTSBTTCBEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEE---CcCCCCCccEEE
Confidence 966543221 11 11 2222334679999998885 22356666766666543321 123445567888
Q ss_pred EEEEe
Q 006662 614 LFANK 618 (636)
Q Consensus 614 l~~~K 618 (636)
|||++
T Consensus 176 lv~~~ 180 (181)
T PF01728_consen 176 LVCRG 180 (181)
T ss_dssp EESEE
T ss_pred EEEcC
Confidence 88864
No 304
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.95 E-value=0.0081 Score=59.30 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=88.4
Q ss_pred cCcchhcchhh--HHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhc-CCCeEEEEecCCCCCccchHH---
Q 006662 443 DGVTAEMFRED--TALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALV-DDPLWVMNTVPVEAKINTLGV--- 516 (636)
Q Consensus 443 ~~~~~~~f~~d--~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~-~~~v~~mnv~~~~~~~~~l~~--- 516 (636)
+|+..+.|..| ...-|+-|+- -.+..|.. .....++|+|||+|+.+-.+. -.|. .-|..++..+..+..
T Consensus 2 ~gipD~~F~~~~~~p~TK~EIRa--l~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~~p~--~~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 2 PGIPDELFERDEGGPMTKEEIRA--LTLSKLRP-RPGDRLWDIGAGTGSITIEWALAGPS--GRVIAIERDEEALELIER 76 (187)
T ss_pred CCCCchhhccCCCCCCcHHHHHH--HHHHhhCC-CCCCEEEEeCCCccHHHHHHHHhCCC--ceEEEEecCHHHHHHHHH
Confidence 35556667777 3333444431 11333555 557799999999999886665 1122 334444544223322
Q ss_pred HHhh-cc--cchhhccc-cccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHH
Q 006662 517 IYER-GL--IGTYQNWC-EAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSIT 591 (636)
Q Consensus 517 ~~eR-gl--i~~~~~~c-e~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~ 591 (636)
..+| |+ +-++..+. +.++..| +||.|-. .. . -.++.||-....-|||||.+|.. -+.+.+.++-+..
T Consensus 77 N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI-----GG-g-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~ 148 (187)
T COG2242 77 NAARFGVDNLEVVEGDAPEALPDLP-SPDAIFI-----GG-G-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEAL 148 (187)
T ss_pred HHHHhCCCcEEEEeccchHhhcCCC-CCCEEEE-----CC-C-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHH
Confidence 2222 22 11222222 4555556 7776655 21 2 67899999999999999999997 5777888888888
Q ss_pred hcCCC-ceE
Q 006662 592 DGMEW-EGR 599 (636)
Q Consensus 592 ~~~~W-~~~ 599 (636)
+.+.+ ++.
T Consensus 149 ~~~g~~ei~ 157 (187)
T COG2242 149 EQLGGREIV 157 (187)
T ss_pred HHcCCceEE
Confidence 88988 554
No 305
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.93 E-value=0.0069 Score=68.20 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=68.0
Q ss_pred cCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-CCCCCee
Q 006662 214 LKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP-YPSRAFD 284 (636)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp-f~~~sFD 284 (636)
..++. +|||+++|.|.=+.++++. .-.++.. |+++..++...++ |+ ++.+...|...+. ...+.||
T Consensus 111 ~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA~---D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 111 DNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIVAN---EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcC
Confidence 34554 9999999999888888775 2234455 7787776655433 44 3455656665543 3346799
Q ss_pred EEE----ecccccccccCh------------------HHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAH----CSRCLIPWGQYD------------------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~----~s~~L~h~~~d~------------------~~~L~el~RvLKPGG~Liis~p 321 (636)
.|+ |+..- .+..++ ..+|..+.+.|||||+++.++-
T Consensus 186 ~ILvDaPCSG~G-~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 186 AILLDAPCSGEG-TVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred eEEEcCCCCCCc-ccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 999 55322 111122 3678889999999999999965
No 306
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.93 E-value=0.0094 Score=62.57 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHc---CCCeEEE--Eec--cccCCCCCCCeeEEEec
Q 006662 218 SIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER---GVPALIG--VMA--SIRLPYPSRAFDMAHCS 289 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~--~~d--~~~Lpf~~~sFDlV~~s 289 (636)
.+++|||+|||+|.-+..+.+. + ....+...|.|+.++++++.- ....... ... ....++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 3458999999999755544443 2 222444458899999887532 2111100 000 1112232 34999999
Q ss_pred ccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 290 RCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 290 ~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++|....+.. ..+++.+.+.+.+ +|+|..|
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 9998877532 5677777777765 8999987
No 307
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.90 E-value=0.00033 Score=62.67 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=62.5
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---i~~~~-~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
-+|||+|||.|.|..++.+.. ..++..+|-.+..+.++..+ |+ +.+++ |+-+....++ ..||+|=++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 379999999999999998775 45666666664444444331 11 12222 2222222344 88999999888
Q ss_pred cccCC-----CCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 549 FSLYK-----DRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 549 fs~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|.... .+-....++.++.|+|||||.+++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 87431 1124568899999999999999873
No 308
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.89 E-value=0.0018 Score=72.12 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=61.6
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh----cccchhhccc-ccc--CC--CCCccceee
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAM--ST--YPRTYDLIH 544 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~c-e~~--~~--yp~t~Dl~H 544 (636)
....+|||||||.||++.+|++. + .-.|+..|.+...+..+.++ |+--.+.--+ ..+ .. -+.+||.|-
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 33579999999999999888764 2 12355556666676665443 4410010011 122 11 137899998
Q ss_pred ec------cccccCCC------CcC-------HHHHHHHHhhcccCCcEEEEE
Q 006662 545 AD------SIFSLYKD------RCE-------MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 545 ~~------~~fs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~ 578 (636)
++ |++..... .-+ -..+|-++-|+|||||.++++
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 65 33331110 000 137999999999999999997
No 309
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.89 E-value=0.0042 Score=62.64 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=91.6
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccc--hhhccccccCCCCCccceeeeccc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIG--TYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~--~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
+.. +.-+-|||+|||+|--|+.|.+.+- -.+.+|.+..||.++.||-+=| ++.|..|.+++=|.|||-+-+.+-
T Consensus 46 lp~-~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 46 LPG-PKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCC-CCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee
Confidence 444 5789999999999999999998873 1346677889999999977765 334888999888999995322111
Q ss_pred cc---cCCCCcCHH-----HHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCce-EEeccCCCCCCcceEEEE
Q 006662 549 FS---LYKDRCEME-----DVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEG-RIADHENGPRQREKILFA 616 (636)
Q Consensus 549 fs---~~~~~c~~~-----~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~~~~l~~ 616 (636)
.. .-...|..+ .++--+-..|.+|+..++. .+.+.++.|..-+..--..- .++|.-.+..++-..||.
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 11 111223333 4566689999999999998 44555555555443322221 234443233344445555
No 310
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.88 E-value=0.015 Score=61.36 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=69.6
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---------CCeEEEEeccccC-CCCCCCee
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL-PYPSRAFD 284 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---------~~~~~~~~d~~~L-pf~~~sFD 284 (636)
..+.+++||-||-|.|..++++++... +..+...|++++.++.+++.. +.+.+...|.... .-...+||
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 344457999999999999999999852 112223377889999987653 2244555554332 21234899
Q ss_pred EEEecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|++-. ..+..+. ...+++.+.|.|+++|.++...
T Consensus 152 vIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 152 VIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999733 2121111 1689999999999999999983
No 311
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.86 E-value=0.0063 Score=60.14 Aligned_cols=128 Identities=16% Similarity=0.239 Sum_probs=75.6
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHH
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~e 261 (636)
|.....|.+... ....+..-+.+..++.. ..+. ++||+-||+|.++.+.+.+|. .++-+ |.+...++..++
T Consensus 10 gr~l~~p~~~~~-RPT~drvrealFniL~~~~~~g~--~vLDLFaGSGalGlEALSRGA~~v~fV---E~~~~a~~~i~~ 83 (183)
T PF03602_consen 10 GRKLKTPKGDNT-RPTTDRVREALFNILQPRNLEGA--RVLDLFAGSGALGLEALSRGAKSVVFV---EKNRKAIKIIKK 83 (183)
T ss_dssp T-EEE-TT--TS--SSSHHHHHHHHHHHHCH-HTT---EEEETT-TTSHHHHHHHHTT-SEEEEE---ES-HHHHHHHHH
T ss_pred CCEecCCCCCCc-CCCcHHHHHHHHHHhcccccCCC--eEEEcCCccCccHHHHHhcCCCeEEEE---ECCHHHHHHHHH
Confidence 344445544322 33345555666666653 2444 999999999999999999975 44444 777777766654
Q ss_pred c----CC--CeEEEEecccc-CC---CCCCCeeEEEecccccccccCh--HHHHHHHH--hcccCCcEEEEEeC
Q 006662 262 R----GV--PALIGVMASIR-LP---YPSRAFDMAHCSRCLIPWGQYD--GLYLIEVD--RVLRPGGYWILSGP 321 (636)
Q Consensus 262 r----g~--~~~~~~~d~~~-Lp---f~~~sFDlV~~s~~L~h~~~d~--~~~L~el~--RvLKPGG~Liis~p 321 (636)
+ +. ...+...|... ++ .....||+|+.-. ++.... ..++..+. .+|+++|.+++...
T Consensus 84 N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 84 NLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 4 22 25566566322 21 2467899999865 333332 56777776 79999999999864
No 312
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.81 E-value=0.026 Score=55.96 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=60.5
Q ss_pred EEEEeCCCCcHHHHHHhh--cCCEEEEcCcCCchHHHHHHHH----HcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006662 221 TAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~--~~v~vv~i~p~Dis~a~l~~A~----erg~-~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
+++|||+|.|.-+.-|+= -...++-+ |.....+.+.+ +-+. ++.+....++. +....+||+|++ +++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~Lv---Es~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a-RAv- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLV---ESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA-RAV- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEE---ESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE-ESS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEE---eCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe-ehh-
Confidence 799999999965555543 34444455 54555444432 3354 37777777766 556788999998 444
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
.....++.-+...|++||.+++.
T Consensus 125 ---~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 ---APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ---SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCCEEEEE
Confidence 24468899999999999998887
No 313
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0053 Score=63.75 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=65.3
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC---CCeEEEEeccccCCCC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYP 279 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg---~~~~~~~~d~~~Lpf~ 279 (636)
..++.|.+.+...+++ +|||||+|.|.++..|++++..++.+ +++..+++..+++. .++.+..+|+...+++
T Consensus 17 ~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~ai---EiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 17 NVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAI---EIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEE---EeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 3567777777666655 99999999999999999997666666 66777777666553 4578888898888887
Q ss_pred CC-CeeEEEecccc
Q 006662 280 SR-AFDMAHCSRCL 292 (636)
Q Consensus 280 ~~-sFDlV~~s~~L 292 (636)
+. .++.|+++.-.
T Consensus 92 ~l~~~~~vVaNlPY 105 (259)
T COG0030 92 SLAQPYKVVANLPY 105 (259)
T ss_pred hhcCCCEEEEcCCC
Confidence 54 68888887644
No 314
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00043 Score=66.45 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=79.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc-CCC--e---EEEEec----cccCCCCCCCeeEEEe
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER-GVP--A---LIGVMA----SIRLPYPSRAFDMAHC 288 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er-g~~--~---~~~~~d----~~~Lpf~~~sFDlV~~ 288 (636)
+++||++|.|.-.++..|....+...++--.|.++..++..++- ..+ . ...++. ..+.......||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 35899999996655555544432222333346666666555422 111 0 111110 1112223468999999
Q ss_pred cccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeec-ccccEEEE
Q 006662 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI-QKKDLAIW 367 (636)
Q Consensus 289 s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~-~~~~~aIW 367 (636)
+.|+ -+.+..+.+++.+.+.|||.|.-++..| +....++ .+.+.+...++.... +.-+.+||
T Consensus 110 ADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsP------------RRg~sL~----kF~de~~~~gf~v~l~enyde~iw 172 (201)
T KOG3201|consen 110 ADCL-FFDEHHESLVDTIKSLLRPSGRALLFSP------------RRGQSLQ----KFLDEVGTVGFTVCLEENYDEAIW 172 (201)
T ss_pred ccch-hHHHHHHHHHHHHHHHhCcccceeEecC------------cccchHH----HHHHHHHhceeEEEecccHhHHHH
Confidence 9999 5554558899999999999999888877 2223333 344445555665543 44456777
Q ss_pred eCC
Q 006662 368 QKP 370 (636)
Q Consensus 368 qKp 370 (636)
|+-
T Consensus 173 qrh 175 (201)
T KOG3201|consen 173 QRH 175 (201)
T ss_pred HHH
Confidence 754
No 315
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.74 E-value=0.0019 Score=65.86 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=67.2
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCC--Ce--EEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeec
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDD--PL--WVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~v--~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~ 546 (636)
... ...+.|+|+|+|.|.++.++.+. ++ +++ |.+ ..++.+.+..=|... =..-|.++|. +|++...
T Consensus 96 ~d~-~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp-~v~~~~~~~~rv~~~--~gd~f~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 96 FDF-SGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLP-EVIEQAKEADRVEFV--PGDFFDPLPV-ADVYLLR 165 (241)
T ss_dssp STT-TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-H-HHHCCHHHTTTEEEE--ES-TTTCCSS-ESEEEEE
T ss_pred ccc-cCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccH-hhhhccccccccccc--cccHHhhhcc-ccceeee
Confidence 455 67899999999999999999754 23 333 443 344444441111111 1134588899 9999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCC--cEEEEEeC
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPE--GSVIIRDD 580 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPg--G~~i~~d~ 580 (636)
+++-.+.+. +...||-.+-+.|+|| |.++|-|.
T Consensus 166 ~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 166 HVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 888877653 4568999999999999 99999753
No 316
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.70 E-value=0.009 Score=65.16 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL 276 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~L 276 (636)
+.+++.+.+.+... + .++||++||+|.++..+++....++++ |.++.+++.++++ +. ++.+...|..+.
T Consensus 193 e~l~~~v~~~~~~~-~--~~vLDl~~G~G~~sl~la~~~~~v~~v---E~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 193 EKMLEWALDATKGS-K--GDLLELYCGNGNFTLALARNFRRVLAT---EISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHhhcC-C--CeEEEEeccccHHHHHHHhhCCEEEEE---ECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 44444555544321 2 369999999999999998875556666 8888888887654 33 467777776442
Q ss_pred -C-CC--------------CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 277 -P-YP--------------SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 277 -p-f~--------------~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+ +. ...||+|+.---. ..-...++..+.+ |++.++++..
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeC
Confidence 1 10 1258999875432 1111445555544 7888888843
No 317
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.69 E-value=0.0068 Score=62.88 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=61.8
Q ss_pred HHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC--CC----eEEEEeccccC
Q 006662 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG--VP----ALIGVMASIRL 276 (636)
Q Consensus 203 ~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg--~~----~~~~~~d~~~L 276 (636)
..++.|.+..++++++ .|||||.|||.++..|++.+..++.+ ++++.++....+|. .+ ..+..+|....
T Consensus 45 ~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~---E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAV---EIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEE---ecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 4566777777777776 99999999999999999998777766 66667776666653 33 55666676666
Q ss_pred CCCCCCeeEEEecccc
Q 006662 277 PYPSRAFDMAHCSRCL 292 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L 292 (636)
++| .||.++++.-.
T Consensus 120 d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLP--RFDGCVSNLPY 133 (315)
T ss_pred CCc--ccceeeccCCc
Confidence 555 69999986543
No 318
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.68 E-value=0.0085 Score=59.94 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhh-hc----cCCCCCcceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHhhcc------c
Q 006662 456 LWKKRVTYYKSVD-YQ----LAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERGL------I 523 (636)
Q Consensus 456 ~w~~~v~~y~~~~-~~----l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgl------i 523 (636)
.+.+.++.|++-+ .. ++. .----||.+|||+|.-=-++-. +.+-|.- .|..+++-+++-.+-- +
T Consensus 52 ~yne~~~~ykrelFs~i~~~~gk-~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~---lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 52 IYNEIADSYKRELFSGIYYFLGK-SGKGDVLEVGCGTGANFKFYPWKPINSVTC---LDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHhhhHHHhcc-cCccceEEecccCCCCcccccCCCCceEEE---eCCcHHHHHHHHHHHhhccCcce
Confidence 3444555565422 11 333 3334579999999964344433 3333444 4445567666544321 1
Q ss_pred c-hhhccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 524 G-TYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 524 ~-~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
. .+|.-.|.+.-.+ .+||.|-+.-+.- +.-+....|-|+-|||||||.+|+-+.+
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 1 3333346666555 8999766522221 2234468999999999999999997643
No 319
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.014 Score=61.75 Aligned_cols=155 Identities=14% Similarity=0.206 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhccC--CCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHH---HHHHHc----CC--------
Q 006662 202 DAYIDDIGKLINLK--DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQV---QFALER----GV-------- 264 (636)
Q Consensus 202 ~~~id~L~~lL~l~--~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l---~~A~er----g~-------- 264 (636)
...++.|..+.+.. .....+||--|||.|+++..|+..|...- +.+.|--|+ .++... +.
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~q---GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQ---GNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccccc---ccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 45666777766532 22345799999999999999998876432 224444443 122211 00
Q ss_pred -------------Ce-----------------EEEEeccccC---CCCCCCeeEEEecccccccccChHHHHHHHHhccc
Q 006662 265 -------------PA-----------------LIGVMASIRL---PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLR 311 (636)
Q Consensus 265 -------------~~-----------------~~~~~d~~~L---pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK 311 (636)
++ .+..+|..+. +-..++||+|+..+.+ .-..+--.++..+..+||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-echHHHHHHHHHHHHhcc
Confidence 00 0011111110 0112479999976544 444455789999999999
Q ss_pred CCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeeccc
Q 006662 312 PGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (636)
Q Consensus 312 PGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~~ 361 (636)
|||+++=.+|-.+.-....+ ......++-..+.+..++++++|+.+.+.
T Consensus 288 ~GGvWiNlGPLlYHF~d~~g-~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 288 PGGVWINLGPLLYHFEDTHG-VENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcEEEeccceeeeccCCCC-CcccccccccHHHHHHHHHhcCcEEEEee
Confidence 99999999884432221111 12233455567888999999999998875
No 320
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.64 E-value=0.0039 Score=62.77 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-CCE-EEEcCcCCchHHHHHHHH-------H----cCC-
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFAL-------E----RGV- 264 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~v~-vv~i~p~Dis~a~l~~A~-------e----rg~- 264 (636)
+-....+..+.+.+.+.+++ ..+|||||.|......+-. ++. +++| ++.+...+.|. + .+.
T Consensus 25 Ei~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GI---Ei~~~~~~~a~~~~~~~~~~~~~~g~~ 99 (205)
T PF08123_consen 25 EISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGI---EILPELHDLAEELLEELKKRMKHYGKR 99 (205)
T ss_dssp GCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEE---E-SHHHHHHHHHHHHHHHHHHHHCTB-
T ss_pred ecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEE---EechHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444556666777666666 9999999999876665543 432 4455 44444333332 1 122
Q ss_pred --CeEEEEeccccCCCCC---CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEE
Q 006662 265 --PALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 265 --~~~~~~~d~~~Lpf~~---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Lii 318 (636)
++.+..+|....++.. ...|+|+++... +.++....|.++..-||+|-+++-
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 3444555543322111 346999998755 344446667888888988877654
No 321
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.63 E-value=0.004 Score=64.87 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred cceEeeecccchhhhhhhcCC---CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~ 546 (636)
..+||||+||.|+++.+|++. .- .|+..|.+...+..+.++ |+ +-+++ |. ..+......||.|-++
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLD 147 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEc
Confidence 467999999999999877653 11 355667766676655443 43 22222 21 1222222569998765
Q ss_pred cccccCC------------CCcCH-------HHHHHHHhhcccCCcEEEEE
Q 006662 547 SIFSLYK------------DRCEM-------EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 547 ~~fs~~~------------~~c~~-------~~~l~e~dRiLrPgG~~i~~ 578 (636)
-=.|... +.-++ ..+|-++-++|||||+++.+
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4433210 00011 25899999999999999997
No 322
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.63 E-value=0.012 Score=61.57 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=77.9
Q ss_pred CCcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh--cc--------cchhh-ccccccCCCCCccce
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER--GL--------IGTYQ-NWCEAMSTYPRTYDL 542 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR--gl--------i~~~~-~~ce~~~~yp~t~Dl 542 (636)
...++||++|||.|+++..+.+.+ + .+++-+|..++.+..+.+. .+ +-+.+ |--+-....+++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 345699999999999998887764 3 3444555554566666543 00 00111 111111123689999
Q ss_pred eeeccccccCCC-CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccC--CCCCCcceEE
Q 006662 543 IHADSIFSLYKD-RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE--NGPRQREKIL 614 (636)
Q Consensus 543 ~H~~~~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~~~l 614 (636)
|=++.-...... .--....+-.+-|+|+|||.+++.- ..+.+..+.+.++..=..+..+..- .-+.+.-.++
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~ 228 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFT 228 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEE
Confidence 876543221111 1113577788999999999999852 2334444444433332233322211 1111235688
Q ss_pred EEEe
Q 006662 615 FANK 618 (636)
Q Consensus 615 ~~~K 618 (636)
+|.|
T Consensus 229 ~as~ 232 (270)
T TIGR00417 229 IGSK 232 (270)
T ss_pred EEEC
Confidence 8887
No 323
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.016 Score=64.56 Aligned_cols=99 Identities=22% Similarity=0.248 Sum_probs=77.0
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~ 296 (636)
++|-+|||.-.+...+.+-|.. +|.-.|+|.-.++....++ ....+...+...+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999887654 3333477777766665444 346788889999999999999999988887766
Q ss_pred cChH---------HHHHHHHhcccCCcEEEEEeC
Q 006662 297 QYDG---------LYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 297 ~d~~---------~~L~el~RvLKPGG~Liis~p 321 (636)
.+.. ..+.++.|+|+|||+++...-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 5543 356899999999999877643
No 324
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.62 E-value=0.0039 Score=69.41 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=62.8
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc-cchh-hccccccCCCC-Cccceeeeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTY-QNWCEAMSTYP-RTYDLIHADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-i~~~-~~~ce~~~~yp-~t~Dl~H~~~~ 548 (636)
....|||+|||.|+++.+|++..- -..|+..|.++.++..+.++ |+ +.+. +|..+....++ .+||.|=++.=
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 356899999999999988876510 02456667776777666443 33 1111 12222111233 68999875443
Q ss_pred cccCC------------CC-------cCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYK------------DR-------CEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~------------~~-------c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+|... .. .....+|-++-++|||||.++++.
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 33210 00 112368999999999999999873
No 325
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.62 E-value=0.01 Score=65.18 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=73.6
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEeccccC----CCCCCCeeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL----PYPSRAFDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~L----pf~~~sFDlV 286 (636)
+++|||+=|=||.|+.+.+..|. .++++ |.|...++.|+++ +. ...+.++|+... .-....||+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~V---D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSV---DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEE---eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 34999999999999999999987 77788 9999999999865 32 356777775432 1224589999
Q ss_pred Eecc---cc-----cccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSR---CL-----IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~---~L-----~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.-. +- .....+-..++..+.++|+|||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9721 10 01111224688899999999999999965
No 326
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.0013 Score=62.86 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=49.2
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeCCCCc
Q 006662 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNW 325 (636)
Q Consensus 267 ~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w 325 (636)
.+..-.....+|.++|.|+|++.++++|+..+. ..++++++|+|||||+|-++.|...+
T Consensus 32 dlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 32 DLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 333334556789999999999999999988655 68999999999999999999986664
No 327
>PRK01581 speE spermidine synthase; Validated
Probab=96.54 E-value=0.015 Score=63.32 Aligned_cols=148 Identities=9% Similarity=0.016 Sum_probs=82.2
Q ss_pred CCcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh-ccc------------chh-hccccccCCCCCc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER-GLI------------GTY-QNWCEAMSTYPRT 539 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR-gli------------~~~-~~~ce~~~~yp~t 539 (636)
...++||++|||.|+.++.+.+.+ + .+|+-+|..+.+++++.+. .|. -+. .|--+-...-++.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 457899999999999988888764 4 3455555555688888752 111 011 1111111223468
Q ss_pred cceeeeccccccC--CCCcCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCCceEEeccCCCCC-Ccc
Q 006662 540 YDLIHADSIFSLY--KDRCEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADHENGPR-QRE 611 (636)
Q Consensus 540 ~Dl~H~~~~fs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e~~~~-~~~ 611 (636)
||+|=++--.... ..+---..++-.+-|.|+|||.++.... .+....+.+.++..--.+..+.+---+. ..-
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~W 306 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDW 306 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCce
Confidence 9998876211111 1111124688899999999999988643 2232334444444333333222111111 126
Q ss_pred eEEEEEecCCCCC
Q 006662 612 KILFANKKYWTAP 624 (636)
Q Consensus 612 ~~l~~~K~~w~~~ 624 (636)
..++|.|......
T Consensus 307 gF~~as~~~~~~~ 319 (374)
T PRK01581 307 GFHIAANSAYVLD 319 (374)
T ss_pred EEEEEeCCccccc
Confidence 6888888666443
No 328
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.026 Score=56.71 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=65.2
Q ss_pred HHHHHhhcc-CCCCCcEEEEeCCCCcHHHHHHhhc---C--CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC--
Q 006662 206 DDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-- 277 (636)
Q Consensus 206 d~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~---~--v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp-- 277 (636)
.+|.+...+ .++. +|+|+|+-.|+|+..++++ + +.++++.|.+.. ..+.+.++|...-+
T Consensus 34 ~el~~k~~i~~~~~--~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 34 LELNEKFKLFKPGM--VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHhcCeecCCC--EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHH
Confidence 344443332 3444 9999999999999999887 2 567777665543 23566777765433
Q ss_pred ------CCCCCeeEEEecccc---cccccCh-------HHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ------YPSRAFDMAHCSRCL---IPWGQYD-------GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ------f~~~sFDlV~~s~~L---~h~~~d~-------~~~L~el~RvLKPGG~Liis~p 321 (636)
+....+|+|+|-.+- -++..|. ..++.-...+|+|||.|++-..
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 234457999972221 1122122 3456667789999999999854
No 329
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.53 E-value=0.015 Score=66.38 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=46.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-------EEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccC-----CCCCC
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-------LAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRL-----PYPSR 281 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-------~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~L-----pf~~~ 281 (636)
..+|||.|||+|.|...++++.. ....+.+.|+++..+..++.+- ....+...+.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 35899999999999988876521 1245566699999888776441 1222332221111 11125
Q ss_pred CeeEEEecccc
Q 006662 282 AFDMAHCSRCL 292 (636)
Q Consensus 282 sFDlV~~s~~L 292 (636)
.||+|+++--.
T Consensus 112 ~fD~IIgNPPy 122 (524)
T TIGR02987 112 LFDIVITNPPY 122 (524)
T ss_pred cccEEEeCCCc
Confidence 79999997644
No 330
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.043 Score=57.06 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=85.3
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc-C--CEEEEcCcCCchHHHHHHHHHc----C--CCeEEEEecccc
Q 006662 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIR 275 (636)
Q Consensus 205 id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--v~vv~i~p~Dis~a~l~~A~er----g--~~~~~~~~d~~~ 275 (636)
+..|..+|...+|. +||+-|.|+|+++.++++. + -....+ |+++...+.|++. + ..+.+..-|+..
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tf---efH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTF---EFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEE---EecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 45678888888988 9999999999999999886 2 233455 7788777777643 3 346666667666
Q ss_pred CCCC--CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEE-eCCCCccccccCCCCchhhhHHHHHHHHHHHHH
Q 006662 276 LPYP--SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS-GPPVNWESHWKGWNRTTEDLKSEQNGIETIARS 352 (636)
Q Consensus 276 Lpf~--~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis-~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~ 352 (636)
.-|. +..+|.|+.- + +.|..++--++.+||.+|.-+.+ .| =+++.++. -+++.+
T Consensus 169 ~GF~~ks~~aDaVFLD-----l-PaPw~AiPha~~~lk~~g~r~csFSP----------------CIEQvqrt-ce~l~~ 225 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLD-----L-PAPWEAIPHAAKILKDEGGRLCSFSP----------------CIEQVQRT-CEALRS 225 (314)
T ss_pred CCccccccccceEEEc-----C-CChhhhhhhhHHHhhhcCceEEeccH----------------HHHHHHHH-HHHHHh
Confidence 5544 6789998752 2 25556777788899987743333 33 23344443 346667
Q ss_pred hceEeec
Q 006662 353 LCWKKLI 359 (636)
Q Consensus 353 l~Wk~v~ 359 (636)
++|..+.
T Consensus 226 ~gf~~i~ 232 (314)
T KOG2915|consen 226 LGFIEIE 232 (314)
T ss_pred CCCceEE
Confidence 7886543
No 331
>PRK00811 spermidine synthase; Provisional
Probab=96.52 E-value=0.014 Score=61.61 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=77.1
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhh------cc-----cchhh-ccccccCCCCCccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL-----IGTYQ-NWCEAMSTYPRTYD 541 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl-----i~~~~-~~ce~~~~yp~t~D 541 (636)
...++|||+|||.|+.+..++++ ++ .+|+-+|..+..+.++.+. |+ +-+++ |--+-+..-+.+||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 45789999999999999999887 45 3444445554677777653 11 01111 11111122247899
Q ss_pred eeeeccccccCCC--CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEecc--CCCCCCcce
Q 006662 542 LIHADSIFSLYKD--RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQREK 612 (636)
Q Consensus 542 l~H~~~~fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~ 612 (636)
+|=++. +..+.. .---+.++.++-|+|+|||.+++.- ..+.+..+.+.++..=-.+...-. ..-|.+...
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~ 231 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWS 231 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchhe
Confidence 987642 211110 0012467788999999999999852 123334444433333233332211 111222345
Q ss_pred EEEEEec
Q 006662 613 ILFANKK 619 (636)
Q Consensus 613 ~l~~~K~ 619 (636)
.++|.|.
T Consensus 232 f~~as~~ 238 (283)
T PRK00811 232 FTFASKN 238 (283)
T ss_pred eEEeecC
Confidence 6778774
No 332
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.47 E-value=0.0051 Score=68.66 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred CcceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCC-CCccceeee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTY-PRTYDLIHA 545 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~y-p~t~Dl~H~ 545 (636)
...+||||+||.||.+.+|++. +- -.|+..|.++..+..+.++ |+ +-+.+ |.. .+..+ +..||.|-+
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILV 313 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEE
Confidence 3568999999999998887653 11 1456667777788777554 44 22222 322 12223 478999876
Q ss_pred ccccccCCC---Cc---------C-------HHHHHHHHhhcccCCcEEEEE
Q 006662 546 DSIFSLYKD---RC---------E-------MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 546 ~~~fs~~~~---~c---------~-------~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|.--|.... += + -..+|-+.-+.|||||.++++
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 543332211 00 1 136788999999999999997
No 333
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.46 E-value=0.0062 Score=65.20 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=62.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhccc------c-hhhcc-ccccCCCCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI------G-TYQNW-CEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli------~-~~~~~-ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+|||+|||+|.++..|.+++. +|+.+|.+++++.++.+|.-- + ..-.+ +..+...+.+||+|=|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 46899999999999999998753 678889888999998887320 0 11111 1223334689999888766
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
+-.+... .+..++..+.++ .+||. ||+.
T Consensus 222 L~H~p~~-~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred EEecCHH-HHHHHHHHHHhh-cCCEE-EEEe
Confidence 6544322 233456666654 45555 5553
No 334
>PLN03075 nicotianamine synthase; Provisional
Probab=96.40 E-value=0.017 Score=61.18 Aligned_cols=137 Identities=11% Similarity=0.070 Sum_probs=80.4
Q ss_pred CcceEeeecccchhhhhhhcC----CCeEEEEecCCCCCccchHHHHh-----hcc---cch-hhccccccCCCC--Ccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----DPLWVMNTVPVEAKINTLGVIYE-----RGL---IGT-YQNWCEAMSTYP--RTY 540 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~e-----Rgl---i~~-~~~~ce~~~~yp--~t~ 540 (636)
.-++|+|+|||-|++-+.+.. .+. -+..+|.++..++.+.+ .|| +.. .+|..+ ..+ ..|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~---~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~---~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTT---SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD---VTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh---cccccCCc
Confidence 578999999998877554332 122 23444655555554433 333 111 112222 232 689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC---HHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEE
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD---VDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 617 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~---~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 617 (636)
|+|=+.-+ .|.+.-+.+.+|..+-|.|||||+++++-- ...+..+-....-=.|+....-|-.++ +-.-++|++
T Consensus 197 DlVF~~AL--i~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r 273 (296)
T PLN03075 197 DVVFLAAL--VGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIAR 273 (296)
T ss_pred CEEEEecc--cccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEE
Confidence 99888511 233345668999999999999999999841 222222111111117888766555444 457899999
Q ss_pred ecCC
Q 006662 618 KKYW 621 (636)
Q Consensus 618 K~~w 621 (636)
|.--
T Consensus 274 ~~~~ 277 (296)
T PLN03075 274 KPGG 277 (296)
T ss_pred eecC
Confidence 9663
No 335
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.39 E-value=0.01 Score=60.63 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=67.1
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-------c--cchhhccccccCCCCCccceeeec
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-------L--IGTYQNWCEAMSTYPRTYDLIHAD 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-------l--i~~~~~~ce~~~~yp~t~Dl~H~~ 546 (636)
...+|||+|||+|+|.-.|++.++ -.|..+|.+.+++.--+... . |. +.+|-+-. .|++-+|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~------~d~~~~D 145 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIF------PDFATFD 145 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcC------CCceeee
Confidence 467999999999999999998864 44566677656666533221 1 11 11333322 2443333
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCCceE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-------------------DD---VDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~ 599 (636)
-.|. .+..+|-.|.+.|+| |.+|+= |. ...++++...+..+.|++.
T Consensus 146 vsfi------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 146 VSFI------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred EEEe------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 3332 234478899999999 877762 32 2356666666778888765
No 336
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.38 E-value=0.0035 Score=70.05 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=61.7
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCCCCCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~yp~t~Dl~H~~~ 547 (636)
..+|||||||.|+++.+|++. +- ..|+.+|.+++.+..+.++ |+ +-+.+ |..+....++.+||+|=++.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 568999999999999888764 11 2355556665676666543 44 22222 33222223458899986543
Q ss_pred ------ccccC------CCCcCH-------HHHHHHHhhcccCCcEEEEE
Q 006662 548 ------IFSLY------KDRCEM-------EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ------~fs~~------~~~c~~-------~~~l~e~dRiLrPgG~~i~~ 578 (636)
++... ...-++ ..+|-++-|+|||||.+|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 33210 011111 35899999999999999975
No 337
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.32 E-value=0.022 Score=58.81 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=71.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccc-cCCCC-CccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEA-MSTYP-RTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~-~~~yp-~t~Dl~H~~~~fs~~~ 553 (636)
.--.|-|||||-|-.|. =...+|..|-+++.+.. +| -|.- -.+.+ +|.|++-+ -+|+
T Consensus 180 ~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~-----------V~-----~cDm~~vPl~d~svDvaV~--CLSL-- 238 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS-SERHKVHSFDLVAVNER-----------VI-----ACDMRNVPLEDESVDVAVF--CLSL-- 238 (325)
T ss_pred CceEEEecccchhhhhh-ccccceeeeeeecCCCc-----------ee-----eccccCCcCccCcccEEEe--eHhh--
Confidence 35578999999886654 23457899999888765 11 1321 12233 89998553 0111
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHHHH---HHHHHHHhcCCCceEEeccC
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDVDIL---VKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~---~~~~~~~~~~~W~~~~~~~e 604 (636)
=.-++.+.+.|..|||+|||.++|.+-..-. ....+-+.+|..+..-.|.+
T Consensus 239 Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 239 MGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred hcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 1245779999999999999999997644322 33445577888888766655
No 338
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.32 E-value=0.0059 Score=68.34 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=60.0
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCCC-C-Cccceeeec--
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY-P-RTYDLIHAD-- 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~y-p-~t~Dl~H~~-- 546 (636)
...|||+|||.|+++.+|++. +- -.|+.+|.+..++..+.++ |+ ..+.-.+.....+ | .+||.|=++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence 578999999999988777642 11 1455667776777665443 44 1111112222222 3 679988753
Q ss_pred ----cccccCC------CCcCH-------HHHHHHHhhcccCCcEEEEEe
Q 006662 547 ----SIFSLYK------DRCEM-------EDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 547 ----~~fs~~~------~~c~~-------~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|.... ...++ ..+|-++-|+|||||.++++.
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3332110 11112 268999999999999999973
No 339
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.30 E-value=0.0077 Score=61.58 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=77.3
Q ss_pred ceEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhhcc--cchhhccc-cccCCCC--Cccceeeeccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWC-EAMSTYP--RTYDLIHADSI 548 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl--i~~~~~~c-e~~~~yp--~t~Dl~H~~~~ 548 (636)
..+|++|||.|.|=.+|+++ +++.+-+-..... .-+..|-+.|| +-++..=+ +-+..++ .+.|-|+. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~-~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVA-KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHH-HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 58999999999999999865 3455544443332 46667778888 55554222 3444454 49998887 5
Q ss_pred cc-------cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHH-HHHHHhc
Q 006662 549 FS-------LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVK-IKSITDG 593 (636)
Q Consensus 549 fs-------~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~-~~~~~~~ 593 (636)
|. ..+.|=--+..|-++.|+|+|||.+.+. |..++.+. +.+....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 66 2234444468999999999999999994 76666665 5555443
No 340
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.27 E-value=0.0046 Score=63.84 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=69.6
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc-cchhhc--------cccccCCCCCccceeeecc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQN--------WCEAMSTYPRTYDLIHADS 547 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~--------~ce~~~~yp~t~Dl~H~~~ 547 (636)
.++|||+|||.|-....|+..+ -+|+.+|....++.++-+.-= -.+.-. -|+...-.=..||.|-|.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 5789999999999999999887 588899999889998887621 011100 0111111112399888855
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
+.-.+ -+.+.++--+=+.|+|||.++|++-.
T Consensus 167 vleHV---~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 167 VLEHV---KDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHH---hCHHHHHHHHHHHhCCCCceEeeehh
Confidence 54433 45578899999999999999998643
No 341
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.085 Score=52.33 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHhhcc--CCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHH
Q 006662 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 185 g~~~~F~ggg~~f~~g~~~~id~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~e 261 (636)
|..+.+|.+.. .....+..-+.+..++.. ..|. ++||+=+|+|.++.+.+.+|.. ++-+ |.+....+..++
T Consensus 11 gr~L~~p~~~~-~RPT~drVREalFNil~~~~i~g~--~~LDlFAGSGaLGlEAlSRGA~~~~~v---E~~~~a~~~l~~ 84 (187)
T COG0742 11 GRKLKTPDGPG-TRPTTDRVREALFNILAPDEIEGA--RVLDLFAGSGALGLEALSRGAARVVFV---EKDRKAVKILKE 84 (187)
T ss_pred CCcccCCCCCC-cCCCchHHHHHHHHhccccccCCC--EEEEecCCccHhHHHHHhCCCceEEEE---ecCHHHHHHHHH
Confidence 33444554432 234456666677777753 3444 9999999999999999999753 3334 666666666654
Q ss_pred c----C--CCeEEEEeccccC-CCCCC--CeeEEEecccccccccChHHHHHH--HHhcccCCcEEEEEeC
Q 006662 262 R----G--VPALIGVMASIRL-PYPSR--AFDMAHCSRCLIPWGQYDGLYLIE--VDRVLRPGGYWILSGP 321 (636)
Q Consensus 262 r----g--~~~~~~~~d~~~L-pf~~~--sFDlV~~s~~L~h~~~d~~~~L~e--l~RvLKPGG~Liis~p 321 (636)
+ + ....+...|+... +-... .||+|+.---+..-..+....+.. -..+|+|+|.+++...
T Consensus 85 N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 85 NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 4 2 3455666665432 22222 499999865442111111222233 4578999999999865
No 342
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.26 E-value=0.017 Score=50.50 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=57.0
Q ss_pred Eeeecccchh--hhhhhcCCCeEEEEecCCCCCccchHHHHhhcc------cc-hhhccccccCCCCC--ccceeeeccc
Q 006662 480 LLDMNAYLGG--FAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IG-TYQNWCEAMSTYPR--TYDLIHADSI 548 (636)
Q Consensus 480 vlD~~~g~gg--faa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------i~-~~~~~ce~~~~yp~--t~Dl~H~~~~ 548 (636)
++|+|||.|. +.+.+......+.. .|.+..++.....+.. +. ...+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 45555554322333 4554445555333331 11 11122222233433 89998 6333
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
...+.. ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 332222 789999999999999999998654
No 343
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.26 E-value=0.006 Score=65.50 Aligned_cols=93 Identities=18% Similarity=0.070 Sum_probs=55.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcccchhhccccccCC-C--CCccceeeecccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMST-Y--PRTYDLIHADSIF 549 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgli~~~~~~ce~~~~-y--p~t~Dl~H~~~~f 549 (636)
..+|||+|||+|.+++.|++.---.-.|+.+|..+.++..+.+ .|+ .-++..+..... . ...||+|.++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~--- 156 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVT--- 156 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEEC---
Confidence 4689999999999999887531000013444555566666554 344 111212222211 1 2579998873
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
..++.+.-.+-|.|+|||.+++-.
T Consensus 157 ------~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 ------VGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ------CchHHhHHHHHHhcCCCCEEEEEe
Confidence 223344556678999999998854
No 344
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.25 E-value=0.023 Score=58.71 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=65.7
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcC-C-EEEEcCcCCchHHHHHHHHHc---------CCCeEEEEeccccC-CCCCC-Cee
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRN-I-LAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL-PYPSR-AFD 284 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~-v-~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~L-pf~~~-sFD 284 (636)
.+++||=||-|.|..+..+++.. + .+.. .|+++..++.|++- ...+.+...|.... .-..+ .||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~---VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITV---VEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEE---EES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEE---EecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 45699999999999999999874 2 2222 37777888877642 23567777775432 11223 899
Q ss_pred EEEecccccccccC----hHHHHHHHHhcccCCcEEEEEe
Q 006662 285 MAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 285 lV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~Liis~ 320 (636)
+|+.-..- +.... ...+++.+.+.|+|||.+++..
T Consensus 153 vIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99973221 22111 1689999999999999999975
No 345
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.20 E-value=0.036 Score=59.88 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHc----CCC--eE
Q 006662 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALER----GVP--AL 267 (636)
Q Consensus 195 ~~f~~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~er----g~~--~~ 267 (636)
.||..+...--.+++++. ..|. +|||+=+|.|.|+..++..+.. ++++ |+++.+++..+++ +.. +.
T Consensus 169 v~Fsprl~~ER~Rva~~v--~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~---diNP~A~~~L~eNi~LN~v~~~v~ 241 (341)
T COG2520 169 VYFSPRLSTERARVAELV--KEGE--TVLDMFAGVGPFSIPIAKKGRPKVYAI---DINPDAVEYLKENIRLNKVEGRVE 241 (341)
T ss_pred eEECCCchHHHHHHHhhh--cCCC--EEEEccCCcccchhhhhhcCCceEEEE---ecCHHHHHHHHHHHHhcCccceee
Confidence 445444443344566554 3355 9999999999999999998654 5566 8898888877654 322 56
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 268 ~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+|....+...+.||-|++... .....++....+.|++||.+-+-..
T Consensus 242 ~i~gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 242 PILGDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred EEeccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 777888777766688999998542 2446788899999999999988754
No 346
>PRK04148 hypothetical protein; Provisional
Probab=96.14 E-value=0.023 Score=53.40 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=71.7
Q ss_pred CCcceEeeecccchh-hhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCCCccceeeeccccccCC
Q 006662 475 GRYRNLLDMNAYLGG-FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK 553 (636)
Q Consensus 475 ~~~r~vlD~~~g~gg-faa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~ 553 (636)
++.+.|+|+|||+|. +|..|.+.+. .|+.+|.++..++-+.++|+-.+..|+-+.-...=+.+|+|-+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys-------- 83 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS-------- 83 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE--------
Confidence 345779999999996 9999998876 6667788778888899998755554433211111167888888
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccC
Q 006662 554 DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e 604 (636)
||-..+.+..+.++++++.=++.+.-..
T Consensus 84 -----------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 -----------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred -----------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6677888899999999999998876544
No 347
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.13 E-value=0.028 Score=59.76 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=58.0
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHH----cCCC--eEEEEeccccCCCCCCCeeEEEecc
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALE----RGVP--ALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~e----rg~~--~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
..+.|||+|||+|.++...++.|.. +..+ +.+ +|.+.|++ +... +.+..+.++++.+| +..|+|++-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAv---EAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAV---EAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEE---ehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEecc
Confidence 3458999999999988888887643 3333 333 45555543 2222 34444455555555 5699999854
Q ss_pred cccccccCh--HHHHHHHHhcccCCcEEEEE
Q 006662 291 CLIPWGQYD--GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 291 ~L~h~~~d~--~~~L~el~RvLKPGG~Liis 319 (636)
.- .+.-+. -...-...|.|+|.|.++=.
T Consensus 252 MG-~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 252 MG-YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred ch-hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 33 222122 12222356999999998755
No 348
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.056 Score=55.30 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeEE-EEeccccC
Q 006662 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALI-GVMASIRL 276 (636)
Q Consensus 199 ~g~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~~-~~~d~~~L 276 (636)
.|...+.. ..+.+.+. -..+.+||||+-||.|+..++++|. .+.++ |....|+..-.+..+.+.. ...+...+
T Consensus 62 RG~~KL~~-ale~F~l~-~k~kv~LDiGsSTGGFTd~lLq~gAk~Vyav---DVG~~Ql~~kLR~d~rV~~~E~tN~r~l 136 (245)
T COG1189 62 RGGLKLEK-ALEEFELD-VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAV---DVGYGQLHWKLRNDPRVIVLERTNVRYL 136 (245)
T ss_pred cHHHHHHH-HHHhcCcC-CCCCEEEEecCCCccHHHHHHHcCCcEEEEE---EccCCccCHhHhcCCcEEEEecCChhhC
Confidence 44444433 33334432 2245999999999999999999965 33444 7777777666555554433 22233322
Q ss_pred C---CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeCCCCccc-----cccCCCCchhhhHHHHHHHHH
Q 006662 277 P---YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES-----HWKGWNRTTEDLKSEQNGIET 348 (636)
Q Consensus 277 p---f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~-----~~~~W~~t~e~l~~~~~~ie~ 348 (636)
. +. +..|+|+|--+++. ...+|..+..+|+|+|.++...-|. +.. ..++--+.++.......++++
T Consensus 137 ~~~~~~-~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQ-FEagr~~v~kkGvv~d~~~~~~v~~~i~~ 210 (245)
T COG1189 137 TPEDFT-EKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQ-FEAGREQVGKKGVVRDPKLHAEVLSKIEN 210 (245)
T ss_pred CHHHcc-cCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecch-hhhhhhhcCcCceecCcchHHHHHHHHHH
Confidence 2 22 36789998666633 3588999999999999888864321 110 122223445555667778899
Q ss_pred HHHHhceEeec
Q 006662 349 IARSLCWKKLI 359 (636)
Q Consensus 349 la~~l~Wk~v~ 359 (636)
.+...+|+...
T Consensus 211 ~~~~~g~~~~g 221 (245)
T COG1189 211 FAKELGFQVKG 221 (245)
T ss_pred HHhhcCcEEee
Confidence 99999997653
No 349
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.06 E-value=0.0068 Score=58.28 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=48.0
Q ss_pred CCCCccchHHHHhhcc---------cchhhccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006662 507 VEAKINTLGVIYERGL---------IGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVI 576 (636)
Q Consensus 507 ~~~~~~~l~~~~eRgl---------i~~~~~~ce~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i 576 (636)
+|.+++||.++.+|-- +..++.=++.++ ++ .+||+|=+..++... .+....|-|+.|+|||||.++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEE
Confidence 4667789998866521 223332234443 54 799998775544433 356899999999999999999
Q ss_pred EEeC
Q 006662 577 IRDD 580 (636)
Q Consensus 577 ~~d~ 580 (636)
|.|-
T Consensus 79 i~d~ 82 (160)
T PLN02232 79 ILDF 82 (160)
T ss_pred EEEC
Confidence 8764
No 350
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.04 E-value=0.015 Score=64.89 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=66.9
Q ss_pred cceEeeecccchhhhhhhcCC--CeEEEEecCCCCCccchHHHHhh----cccchhhccccccCC-------CCCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST-------YPRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~-------yp~t~Dl~ 543 (636)
...|||||||.||++.+|++. +- -.|+..|.+..++..+.++ |+ ..+.-.|..... .+.+||.|
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEE
Confidence 468999999999999888764 10 1345556666677666543 33 111112222222 23689987
Q ss_pred eec------cccccCC------CCcC-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhcC
Q 006662 544 HAD------SIFSLYK------DRCE-------MEDVLLEMDRILRPEGSVIIRD----DVDILVKIKSITDGM 594 (636)
Q Consensus 544 H~~------~~fs~~~------~~c~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~~ 594 (636)
=++ |++.... ...+ ...+|.++-|+|||||.++.+. ..+....|+.+++..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 754 2332110 0011 2478999999999999999863 223444555555543
No 351
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.016 Score=54.99 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=53.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+..++|+|||.|-+....+-. .-.++++ |+.+.+++.+.++. +++.+.+++...+-+..+.||.++.+.-+
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGf---DIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGF---DIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEee---ecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 448999999999887555443 3345566 88889988876553 45677888888887778999999987755
No 352
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.90 E-value=0.065 Score=57.55 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=62.8
Q ss_pred EEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHcCC-----CeEE--EEecccc----CCC--CCCCe
Q 006662 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-----PALI--GVMASIR----LPY--PSRAF 283 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~erg~-----~~~~--~~~d~~~----Lpf--~~~sF 283 (636)
.++|+|||.|.=+..|++. +. .+...|.|+|.++++.+.++-. .+.+ ..++... ++- .....
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 8999999999876666553 21 1234455999999988765422 2333 3343322 221 12345
Q ss_pred eEEEecc-cccccccCh-HHHHHHHHh-cccCCcEEEEEe
Q 006662 284 DMAHCSR-CLIPWGQYD-GLYLIEVDR-VLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~-~L~h~~~d~-~~~L~el~R-vLKPGG~Liis~ 320 (636)
.+++... .+-.+.+.. ..+|+++.+ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 6776644 444444333 579999999 999999999974
No 353
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.87 E-value=0.027 Score=57.68 Aligned_cols=128 Identities=11% Similarity=0.128 Sum_probs=70.5
Q ss_pred CcceEeeecccchhhhhhh----cCCCeEEEEecCCCCCccchHHHHh----hcc---cchhh-ccccccCC----C-CC
Q 006662 476 RYRNLLDMNAYLGGFAAAL----VDDPLWVMNTVPVEAKINTLGVIYE----RGL---IGTYQ-NWCEAMST----Y-PR 538 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l----~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl---i~~~~-~~ce~~~~----y-p~ 538 (636)
..++|||+|||+|.-+.+| .... .|+-+|..+..+.++.+ -|+ |.+.+ |..+.+.. . ..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 3779999999999644333 2222 22333444344444433 344 22222 33333222 2 36
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------C----H----HHHHHHHHH----HhcCCCc
Q 006662 539 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------D----V----DILVKIKSI----TDGMEWE 597 (636)
Q Consensus 539 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~----~----~~~~~~~~~----~~~~~W~ 597 (636)
+||+|-+++-= -....++-++-|.|||||.+|+-+ . . .....|+++ ...=+|.
T Consensus 144 ~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 144 EFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred CCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 89999874321 233467888899999999998631 1 0 122344443 3344566
Q ss_pred eEEeccCCCCCCcceEEEEEec
Q 006662 598 GRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 598 ~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
..+.-. .+.+++++|.
T Consensus 218 ~~~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI------GDGVTLCRRL 233 (234)
T ss_pred EEEEEe------CCccEEEEEe
Confidence 555432 3678888875
No 354
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.79 E-value=0.02 Score=64.28 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=63.8
Q ss_pred cchhcchhhHHHHHH---HHHHHHHhhhccCCCCC----cceEeeecccchhhhhhh------c--CCCeEEEEecCCCC
Q 006662 445 VTAEMFREDTALWKK---RVTYYKSVDYQLAQPGR----YRNLLDMNAYLGGFAAAL------V--DDPLWVMNTVPVEA 509 (636)
Q Consensus 445 ~~~~~f~~d~~~w~~---~v~~y~~~~~~l~~~~~----~r~vlD~~~g~ggfaa~l------~--~~~v~~mnv~~~~~ 509 (636)
.+-|.|+.|..++.. .|. +.+...+.. .+ .-+|||+|||.|-...+- . ...|+++ +.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~--~al~D~~~~-~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAV-----Ek 222 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIE--EALKDRVRK-NSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAV-----EK 222 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHH--HHHHHHHTT-S-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEE-----ES
T ss_pred ccHhhHhcCHHHHHHHHHHHH--HHHHhhhhh-ccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEE-----cC
Confidence 467889999765553 232 111122233 32 467999999999885211 1 1233332 33
Q ss_pred Ccc---chH-HHHhhcc---cchhhccccccCCC--CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 510 KIN---TLG-VIYERGL---IGTYQNWCEAMSTY--PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 510 ~~~---~l~-~~~eRgl---i~~~~~~ce~~~~y--p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
+++ +++ .+.+.|+ |.++| +..... |.-.|+|=+ -++..+...-.++..|.-.||.|+|||.+|=
T Consensus 223 n~~A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVS-ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 223 NPNAVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVS-ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp STHHHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred CHhHHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEE-eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 222 332 2244454 44444 444444 678898764 3333333334778899999999999998763
No 355
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.76 E-value=0.079 Score=53.94 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=67.3
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHH----HcCC--CeEEEEecccc-C
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIR-L 276 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~----erg~--~~~~~~~d~~~-L 276 (636)
.+..++.+...+ ++||||.=||.-+..+|.. +-.++.+ |++++..+.+. ..++ .+.+.++.+.+ |
T Consensus 64 fl~~li~~~~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~---eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 64 FLQMLIRLLNAK--RTLELGVFTGYSALAVALALPEDGRVVAI---EIDADAYEIGLELVKLAGVDHKITFIEGPALESL 138 (237)
T ss_pred HHHHHHHHhCCc--eEEEEecccCHHHHHHHHhcCCCceEEEE---ecChHHHHHhHHHHHhccccceeeeeecchhhhH
Confidence 333333333444 8999998888766666654 4445555 66666655543 2343 24555554322 1
Q ss_pred -----CCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 277 -----PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 277 -----pf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..+.++||+++. .+|-.+-..++.++.++||+||.+++.-
T Consensus 139 d~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 145789999975 3555444688999999999999999973
No 356
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.75 E-value=0.042 Score=57.13 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---CCCeEEEEeccccCCC
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPY 278 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---g~~~~~~~~d~~~Lpf 278 (636)
...++.|.+.+...++. .|||||+|.|.++..|++.+..++.+ +.++...+..+++ ..++.+...|...+..
T Consensus 16 ~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~v---E~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAV---EIDPDLAKHLKERFASNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEE---ESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceee---cCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence 55677888887666555 99999999999999999987555555 6677777777664 3468888889888776
Q ss_pred CC---CCeeEEEecccccccccChHHHHHHHHhcccC
Q 006662 279 PS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP 312 (636)
Q Consensus 279 ~~---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKP 312 (636)
+. +.-..|+++.-. . -...++..+...-+.
T Consensus 91 ~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp GGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred HHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 54 456677775432 2 224566666653333
No 357
>PRK03612 spermidine synthase; Provisional
Probab=95.74 E-value=0.027 Score=64.41 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=72.9
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc-c------------cchhh-ccccccCCCCCcc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-L------------IGTYQ-NWCEAMSTYPRTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l------------i~~~~-~~ce~~~~yp~t~ 540 (636)
.+.++|||+|||.|+.+..+.+++- +..|+-+|..+..++.+.+.- + +-+++ |-=+-....++.|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3468899999999999988887642 133444455456888887631 1 11111 1001122346899
Q ss_pred ceeeeccccccCCC---CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceE
Q 006662 541 DLIHADSIFSLYKD---RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 541 Dl~H~~~~fs~~~~---~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~ 599 (636)
|+|-+|--. .... +=--++++-++-|.|+|||.+++.. ..+....+.+.+++....+.
T Consensus 375 DvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 999886211 1111 0001357788999999999999952 34455566666666544443
No 358
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.74 E-value=0.017 Score=63.77 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=73.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----ccc----chhh-ccccccCCC---CCccceee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTY---PRTYDLIH 544 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli----~~~~-~~ce~~~~y---p~t~Dl~H 544 (636)
.++|||++||+|+|+-+++..+- -.|+.+|.++..+..+.+- |+- -+++ |.-+.+..+ .++||+|=
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999866544432 2445556666677655431 331 1111 222222222 25899988
Q ss_pred ecccc-ccC-----CCCcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCCceEEe
Q 006662 545 ADSIF-SLY-----KDRCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 545 ~~~~f-s~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~ 601 (636)
+|-=+ +.. .......+++.-.-++|+|||.++... ..+..+.+.+.+..-..++++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 86432 111 111345677777889999999999842 2345666666677666666655
No 359
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.72 E-value=0.028 Score=59.65 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=42.3
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcC---CEEEEcCcCCchHHHHHHHHHc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER 262 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---v~vv~i~p~Dis~a~l~~A~er 262 (636)
+.+.+.+.+...++. .+||.+||.|.++..+++.. ..++++ |.++.+++.|+++
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~Vigi---D~D~~al~~ak~~ 63 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAI---DRDPDAIAAAKDR 63 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEE---cCCHHHHHHHHHh
Confidence 344555666555554 89999999999999999873 567777 9999999999765
No 360
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.099 Score=57.00 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=70.2
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHHc----CCC-eEEEEeccccCC-
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GVP-ALIGVMASIRLP- 277 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~er----g~~-~~~~~~d~~~Lp- 277 (636)
...++...+|. +|||+.++.|.=+.++++. +..++.+ |.++..++...++ |.. +.....|...++
T Consensus 148 ~a~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~---D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~ 222 (355)
T COG0144 148 PALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAV---DVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE 222 (355)
T ss_pred HHHHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEE---cCCHHHHHHHHHHHHHcCCCceEEEecccccccc
Confidence 44455555665 9999999999777777765 3444555 7787766655433 443 456666665554
Q ss_pred -CCC-CCeeEEEe----c--cccc-----ccccC----------hHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 -YPS-RAFDMAHC----S--RCLI-----PWGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 -f~~-~sFDlV~~----s--~~L~-----h~~~d----------~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+. +.||.|+. + .++. -|... +..+|....++|||||.|+.++-
T Consensus 223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 222 35999994 2 2220 01111 12688899999999999999975
No 361
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.71 E-value=0.015 Score=59.38 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=69.0
Q ss_pred eEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhhcc------cchhhccccccCCCC---Cccceeee
Q 006662 479 NLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL------IGTYQNWCEAMSTYP---RTYDLIHA 545 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl------i~~~~~~ce~~~~yp---~t~Dl~H~ 545 (636)
.+|.+|||.|.--.=|++. ++-++ .-|-+++-+.+.-++-- -..++|.++.=..+| .+.|+|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~---acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY---ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE---EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999876666543 23333 33444456666555443 346677775434443 89999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 546 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 546 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
.-+||.-.. -.+...+-.+.|+|+|||.+++||
T Consensus 151 IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 151 IFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEee
Confidence 888886553 257789999999999999999997
No 362
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.072 Score=59.52 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEecccc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIR 275 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~ 275 (636)
++.+++...+.++..+++ ++||+=||.|.|+..|+++...++++ ++++++++.|++ ++. ++.|..++.++
T Consensus 278 ~ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gv---Ei~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGV---EISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEE---ecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 344555566666555555 89999999999999999886666666 667777766653 343 47888888776
Q ss_pred CCCC---CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 276 LPYP---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 276 Lpf~---~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.... ...||+|+.---- ..-...+++.+.+ ++|-..+++|-.
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPR---AGADREVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred HhhhccccCCCCEEEECCCC---CCCCHHHHHHHHh-cCCCcEEEEeCC
Confidence 6532 3578999874322 1111355555554 578888999854
No 363
>PHA03411 putative methyltransferase; Provisional
Probab=95.58 E-value=0.016 Score=60.86 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=66.0
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC--CccceeeeccccccCC-
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP--RTYDLIHADSIFSLYK- 553 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp--~t~Dl~H~~~~fs~~~- 553 (636)
..+|||+|||.|.++..+.++.- ..+|+.+|.++.++..+.++ +.. ..-.+..+..++ ++||+|=++-=|-...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 34799999999999888866410 13567777777888888765 211 111233444443 7899988876665311
Q ss_pred ----C-----------Cc-CHHHHHHHHhhcccCCcEEEEE
Q 006662 554 ----D-----------RC-EMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 554 ----~-----------~c-~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
. .+ .+...+...-++|.|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 0 11 1468889999999999988774
No 364
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.53 E-value=0.06 Score=56.96 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=66.1
Q ss_pred cEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHc----CC---CeEEEEecccc-CC-C-CCCCeeEEEe
Q 006662 220 RTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIR-LP-Y-PSRAFDMAHC 288 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~er----g~---~~~~~~~d~~~-Lp-f-~~~sFDlV~~ 288 (636)
++|||+=|=||.|+.+.+..|. .++.+ |.|..+++.++++ +. ...+...|+.. +. . ..+.||+|++
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~V---D~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSV---DSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEE---ES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4999999999999999888875 56777 9999999988765 32 35677777543 11 1 2468999997
Q ss_pred ccc---cc--ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 289 SRC---LI--PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 289 s~~---L~--h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
--- -. ....+-..++..+.++|+|||++++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 211 00 1111225688889999999999988754
No 365
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.48 E-value=0.078 Score=59.39 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=80.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC--C-CCccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST--Y-PRTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~--y-p~t~Dl~H~~ 546 (636)
...|||+|||+|.|+.+|++.. ..|+.+|.++.++..+.+. |+ +-.++ |+-+.+.. + +.+||+|-++
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4689999999999999998874 4677788888888877653 33 22222 33232322 3 2679987652
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCceE---EeccCCCCCCcceEEEEEe
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGR---IADHENGPRQREKILFANK 618 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 618 (636)
- .|..+..++-.+-+ |.|++.++++=+. ..-..+..+.+ -.|++. .+|.-.....=|-|.+..|
T Consensus 375 P------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 375 P------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred c------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEEe
Confidence 1 33334566655555 6999999999444 34455555543 236654 4455444444465555543
No 366
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.46 E-value=0.22 Score=50.53 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=59.2
Q ss_pred CcEEEEeCCCCcHHHHHHh--hcCCEEEEcCcCCchHHHHHHHH-HcCCC-eEEEEeccccCCCCCCCeeEEEecccccc
Q 006662 219 IRTAIDTGCGVASWGAYLM--SRNILAVSFAPRDTHEAQVQFAL-ERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La--~~~v~vv~i~p~Dis~a~l~~A~-erg~~-~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
..+++|||.|.|.=+.-|+ .....++=+++.-=.-+.++.+. +-+.+ +.+....++...-...-||+|+| +++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts-RAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS-RAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe-ehc--
Confidence 3599999999997777665 22333333422222223333333 33554 77777777666532111999988 444
Q ss_pred cccChHHHHHHHHhcccCCcEEEEE
Q 006662 295 WGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 295 ~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
.....++.-+..+||+||.+++-
T Consensus 145 --a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 145 --ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred --cchHHHHHHHHHhcccCCcchhh
Confidence 24457788889999999987654
No 367
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.44 E-value=0.014 Score=62.86 Aligned_cols=128 Identities=20% Similarity=0.341 Sum_probs=71.6
Q ss_pred HHHHHHHHH--HHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhc----------
Q 006662 454 TALWKKRVT--YYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG---------- 521 (636)
Q Consensus 454 ~~~w~~~v~--~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg---------- 521 (636)
-.-|.+.+- .|.+. +........||||+||=||=---....+| -.++.+|.+..-+.-+.+|=
T Consensus 41 fNNwvKs~LI~~~~~~---~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~ 115 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKK---VKQNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSK 115 (331)
T ss_dssp HHHHHHHHHHHHHCHC---CCCTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred HhHHHHHHHHHHHHHh---hhccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence 344777753 44332 22224689999999999984444444444 44556666666777777765
Q ss_pred -----ccchhhccccccCC-----CC---Cccceeeecccccc---CCCCcCHHHHHHHHhhcccCCcEEEEE--eCHHH
Q 006662 522 -----LIGTYQNWCEAMST-----YP---RTYDLIHADSIFSL---YKDRCEMEDVLLEMDRILRPEGSVIIR--DDVDI 583 (636)
Q Consensus 522 -----li~~~~~~ce~~~~-----yp---~t~Dl~H~~~~fs~---~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~ 583 (636)
+....+ .+..|.. ++ +.||+|=| -|++ ..+.-....+|.-+-.-|||||+||.+ |...+
T Consensus 116 ~~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVSc--QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 116 QYRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSC--QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TSEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEE--ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cccccchhhee-ccccccchhhhhccccCCCcceeeh--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 111111 1122221 32 59999776 4442 233334568999999999999999998 44444
Q ss_pred HHHHHH
Q 006662 584 LVKIKS 589 (636)
Q Consensus 584 ~~~~~~ 589 (636)
+.++++
T Consensus 193 ~~~l~~ 198 (331)
T PF03291_consen 193 VKRLRE 198 (331)
T ss_dssp HCCHHC
T ss_pred HHHHHh
Confidence 455554
No 368
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.31 E-value=0.1 Score=51.76 Aligned_cols=140 Identities=19% Similarity=0.270 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchh--hhhhhcCCCeEEEEecCCCCCccchH-HHHhhcc--cch
Q 006662 451 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG--FAAALVDDPLWVMNTVPVEAKINTLG-VIYERGL--IGT 525 (636)
Q Consensus 451 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~gg--faa~l~~~~v~~mnv~~~~~~~~~l~-~~~eRgl--i~~ 525 (636)
.+..+.|.+++-.=..+++.+.. ... +++|+|+|-|= .--++.....=+.=|=+..-..+.|. ++.+=|| +-+
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~-~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPD-FGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-C-CCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred CCHHHHHHHHHHHHHHhhhhhcc-CCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 34567888887654444554554 222 69999999662 22233333221122222222223333 4445566 335
Q ss_pred hhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCceEE
Q 006662 526 YQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 526 ~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~~~ 600 (636)
+|.-.|. ..++..||+|=| .+-..+..++--+-+.|+|||.+++- +..+.+...++..+.+.++...
T Consensus 103 ~~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred EEeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 5544455 457899999987 34467888888889999999999985 4455677777777777777653
No 369
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.22 E-value=0.046 Score=60.89 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=69.2
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcc--cchhh-ccccccCCCC---Cccceeeec
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYP---RTYDLIHAD 546 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--i~~~~-~~ce~~~~yp---~t~Dl~H~~ 546 (636)
..+|||++||+|.|+..|++.. -.|+.+|.++.++..+.+ .|+ +-+++ |..+.+..++ .+||+|-.+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4689999999999999998752 245666776677766654 233 22233 3333233332 468887642
Q ss_pred cccccCCCCcC-HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceE
Q 006662 547 SIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 547 ~~fs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 599 (636)
- .|-. .+.++-++.+ |+|++.++++-+...+.+-.+.+..-.|++.
T Consensus 370 P------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 P------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred c------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 1 1222 3455555555 8999999999666666444444444456554
No 370
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.08 E-value=0.095 Score=52.17 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=61.9
Q ss_pred hhccCCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchH-------HHHHHHHHcC-CCeEEEEeccccCC-
Q 006662 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHE-------AQVQFALERG-VPALIGVMASIRLP- 277 (636)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~-------a~l~~A~erg-~~~~~~~~d~~~Lp- 277 (636)
+..++++. +|+|+=-|.|.|++-++.. | .+..+.|.+... .+-..+++.. .+....-.....++
T Consensus 43 FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~ 119 (238)
T COG4798 43 FAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA 119 (238)
T ss_pred EeccCCCC--EEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC
Confidence 34566777 9999999999999998875 4 456776655421 1111121111 01111111111111
Q ss_pred ------CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 ------YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 ------f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+..++|.++.+..+ | ......+..++++.|||||.+++..+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCcccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 223455555554444 3 33447899999999999999999864
No 371
>PLN02366 spermidine synthase
Probab=94.99 E-value=0.039 Score=58.95 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=59.7
Q ss_pred CCcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhh------cc----cchhhccccc---cCCCC-Cc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER------GL----IGTYQNWCEA---MSTYP-RT 539 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR------gl----i~~~~~~ce~---~~~yp-~t 539 (636)
...++|||+|||.|+.+.++++++ +.-+-++..|. ..+.++.+. |+ +-+++ ..+ ....| +.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~--~Da~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHI--GDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEE--ChHHHHHhhccCCC
Confidence 347899999999999999998874 53333444443 355555442 11 11111 111 12343 78
Q ss_pred cceeeeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEE
Q 006662 540 YDLIHADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
||+|-++.-....... ---+.++-.+-|.|+|||.++..
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9998875322111100 01246788999999999999873
No 372
>PHA03412 putative methyltransferase; Provisional
Probab=94.97 E-value=0.035 Score=57.03 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=60.2
Q ss_pred ceEeeecccchhhhhhhcCC----CeEEEEecCCCCCccchHHHHhhcccchhhccccccCCC--CCccceeeecccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY--PRTYDLIHADSIFSL 551 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~y--p~t~Dl~H~~~~fs~ 551 (636)
.+|||+|||+|.++.+++++ +. .+|..+|..+..+..+.+. +.. .+-.+..+..+ +.+||+|=+|==|-.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar~n-~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGKRI-VPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHHhh-ccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 48999999999999987653 22 3566667665677766643 322 22223444444 368999887655542
Q ss_pred C-----CCC---cCHH-HHHHHHhhcccCCcEEEE
Q 006662 552 Y-----KDR---CEME-DVLLEMDRILRPEGSVII 577 (636)
Q Consensus 552 ~-----~~~---c~~~-~~l~e~dRiLrPgG~~i~ 577 (636)
. ..+ ..+. .++-..-|+||||+. |+
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 222 2334 477777888888887 55
No 373
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.88 E-value=0.079 Score=52.79 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=57.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC---EEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQF----ALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v---~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~ 291 (636)
+++|||+|.|+|-.+..-++.|. ...++ .+...+. +..+++.+.+...|.. ..+..||+++.+.+
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~-----~P~~~~ai~lNa~angv~i~~~~~d~~---g~~~~~Dl~LagDl 151 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADI-----DPWLEQAIRLNAAANGVSILFTHADLI---GSPPAFDLLLAGDL 151 (218)
T ss_pred cceeeecccccChHHHHHHHhhhHHHHhcCC-----ChHHHHHhhcchhhccceeEEeecccc---CCCcceeEEEeece
Confidence 45999999999987777776643 33344 3333333 3345655555544432 26678999999887
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.... ...+++. ..+.|+-.|.-++.+.
T Consensus 152 fy~~~-~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 152 FYNHT-EADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred ecCch-HHHHHHH-HHHHHHhCCCEEEEeC
Confidence 73322 3356666 6666666666666543
No 374
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.88 E-value=0.055 Score=54.80 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH-----hhcccchhhccc-cccCCCCCccceeeeccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY-----ERGLIGTYQNWC-EAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-----eRgli~~~~~~c-e~~~~yp~t~Dl~H~~~~ 548 (636)
.....+||.|||.|=....|+-.-.=.+-+|... +..+..+. +.+-++.+..-. |.|.+=+..||+|=+-=+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 4688999999999999987765533222333322 35777777 333444433111 444444479999776222
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------------HHHHHHHHHhcCCCceEEecc
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------------ILVKIKSITDGMEWEGRIADH 603 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------------~~~~~~~~~~~~~W~~~~~~~ 603 (636)
.... ..-++...|.-.-.-|+|+|.+|+.|++. ....+++|.+.=..++...+.
T Consensus 132 lghL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 132 LGHL-TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred hccC-CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 2222 23356678888889999999999975431 235566666666655554433
No 375
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=94.74 E-value=0.12 Score=52.27 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCE-EEEcCcCCchHHHHHHHHHcCC----CeEEEEeccc-c
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL-AVSFAPRDTHEAQVQFALERGV----PALIGVMASI-R 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~-vv~i~p~Dis~a~l~~A~erg~----~~~~~~~d~~-~ 275 (636)
..+.+.+++.+. .+| ++||.||-|-|.....+.++... -.=+ +.++...+..++.+. ++.+..+--+ .
T Consensus 88 tpiMha~A~ai~-tkg--grvLnVGFGMgIidT~iQe~~p~~H~Ii---E~hp~V~krmr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 88 TPIMHALAEAIS-TKG--GRVLNVGFGMGIIDTFIQEAPPDEHWII---EAHPDVLKRMRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred hHHHHHHHHHHh-hCC--ceEEEeccchHHHHHHHhhcCCcceEEE---ecCHHHHHHHHhcccccccceEEEecchHhh
Confidence 445566666654 233 38999999999988888777431 1113 557777777766553 3444333222 2
Q ss_pred CC-CCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 276 LP-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 276 Lp-f~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
++ ++++.||-|+--- +...-++...+.+.+.|+|||+|.|-+-
T Consensus 162 l~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 23 6788999998633 3233346677888999999999998765
No 376
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.73 E-value=0.076 Score=58.28 Aligned_cols=93 Identities=9% Similarity=0.063 Sum_probs=67.0
Q ss_pred cEEEEeCCCCcHHHHHHhhc--CC-EEEEcCcCCchHHHHHHHHHc----CC-CeEEEEeccccCC-CCCCCeeEEEecc
Q 006662 220 RTAIDTGCGVASWGAYLMSR--NI-LAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLP-YPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v-~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~Lp-f~~~sFDlV~~s~ 290 (636)
.+|||+.||+|..+..++.+ ++ .++.. |+++.+++.++++ +. ++.+...|...+- ...+.||+|..-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~n---D~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFAN---DINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEE---eCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 48999999999999999987 43 33444 8888888877644 22 2556666654432 1235799998733
Q ss_pred cccccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 291 ~L~h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
+ ..+..++..+.+.+++||++.++.
T Consensus 123 -f----Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 -F----GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -C----CCcHHHHHHHHHhcccCCEEEEEe
Confidence 2 244689999999999999999983
No 377
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=94.68 E-value=0.051 Score=53.53 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=67.9
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHH----HHhhccc---chhh-ccccccCCCCCccceeeeccccc
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV----IYERGLI---GTYQ-NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~----~~eRgli---~~~~-~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
+|||.|||-|.+=..|++.+.-- -++.+|-++..+.. +-.+|+- .... |.-.. ...+.-||+||=-|-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 99999999999999999876311 15566655444432 3334552 1111 22222 22356788888666554
Q ss_pred c---C--CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhc
Q 006662 551 L---Y--KDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDG 593 (636)
Q Consensus 551 ~---~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~ 593 (636)
. . .....+..++--++++|+|||.|+|+.=.-..+++.+....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence 2 1 11222346777899999999999999755444444444333
No 378
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.67 E-value=0.035 Score=55.55 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=72.8
Q ss_pred chhhHHHHHHHHHHHH-HhhhccCCCCCcceEeeecccch----hhhhhhcC----CCeEEEEecCCCCCccchHHHHhh
Q 006662 450 FREDTALWKKRVTYYK-SVDYQLAQPGRYRNLLDMNAYLG----GFAAALVD----DPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~-~~~~~l~~~~~~r~vlD~~~g~g----gfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
|--|...|..-.+... .++..... ++.=+|..+||++| +.|-.|.+ ..-|-+.+..+|-+...|+.| .+
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~-~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A-r~ 82 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARP-GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA-RA 82 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS--S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH-HH
T ss_pred ccCCHHHHHHHHHHHHHhhccccCC-CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH-Hh
Confidence 5556667766554333 22222233 46788999999999 45555555 123568899999987777665 45
Q ss_pred cccc------------------------------------hhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHH
Q 006662 521 GLIG------------------------------------TYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLE 564 (636)
Q Consensus 521 gli~------------------------------------~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e 564 (636)
|+++ ..|+.++ ..+.+.-||+|=|-+|+-... .-....++--
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHH
Confidence 5533 2233333 223348899999999987553 3345789999
Q ss_pred HhhcccCCcEEEEEeCH
Q 006662 565 MDRILRPEGSVIIRDDV 581 (636)
Q Consensus 565 ~dRiLrPgG~~i~~d~~ 581 (636)
+-+.|+|||++++....
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999997543
No 379
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.50 E-value=0.11 Score=55.39 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=77.8
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhccccccCC----CCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST----YPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~~ce~~~~----yp~t~Dl~H~~~~ 548 (636)
...|||+|||.|.|+..|+++. ..|+.+|.++.++..+.+. |+ .-.+-.+..... .+..||+|-++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 3689999999999999999864 3678888887788776543 44 211112222211 22579988875
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCCceE---EeccCCCCCCcceEEEEEe
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI-LVKIKSITDGMEWEGR---IADHENGPRQREKILFANK 618 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 618 (636)
..|-.+...++++=.-++|++.++++-+... .+.++.+ . .|++. .+|.-.....=|-|.+.+|
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 2343344444454455789999999855543 3344444 2 46654 4454444444466666554
No 380
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.48 E-value=0.1 Score=56.71 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIR 275 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~~~ 275 (636)
..+++.+.++++..++ .|||+=||+|.|+..|++..-.++++ ++++.+++.|+++ ++ ++.+..++..+
T Consensus 183 ~~l~~~~~~~l~~~~~---~vlDlycG~G~fsl~la~~~~~V~gv---E~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG---DVLDLYCGVGTFSLPLAKKAKKVIGV---EIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT-TT---EEEEES-TTTCCHHHHHCCSSEEEEE---ES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcCCC---cEEEEeecCCHHHHHHHhhCCeEEEe---eCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 4445555555543322 79999999999999999987777777 7788888877643 43 57777665443
No 381
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=94.42 E-value=0.024 Score=57.22 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=47.0
Q ss_pred CcceEeeecccchhhhhhhcCC--Ce-EEEEecCCCCCccchHHHHhh----cc--cchhhccccccCCCC--Cccceee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDD--PL-WVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIH 544 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~--~v-~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~~~ce~~~~yp--~t~Dl~H 544 (636)
..-+|||+|||+|=++|.|... ++ -|..| +..+.....+.++ |+ +.+.+ ......+| ..||.||
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~v---E~~~~l~~~A~~~l~~~~~~nv~~~~--gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSV---ERDPELAERARRNLARLGIDNVEVVV--GDGSEGWPEEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEE---ESBHHHHHHHHHHHHHHTTHSEEEEE--S-GGGTTGGG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEE---CccHHHHHHHHHHHHHhccCceeEEE--cchhhccccCCCcCEEE
Confidence 3679999999999888777642 22 22322 3332333333222 33 22222 12344555 5699999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+.+ ..+.+--++-+-|||||.+|+-
T Consensus 147 v~~---------a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 147 VTA---------AVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp ESS---------BBSS--HHHHHTEEEEEEEEEE
T ss_pred Eee---------ccchHHHHHHHhcCCCcEEEEE
Confidence 832 2233334444559999999984
No 382
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.29 E-value=0.082 Score=57.74 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=68.9
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhcc
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNW 529 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ 529 (636)
|.+.-..|.+ .++|.-+...+.+ +. -++|++||+|+...+...-.. -++...+....++...-+--.-..+++-
T Consensus 88 ~~~~~~~~~~-~~~~~~l~~~~~~-~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k 161 (364)
T KOG1269|consen 88 GNSNEMFWIR-HEGIVALRESCFP-GS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNK 161 (364)
T ss_pred hhHHHHHHHh-hcchHHHhhcCcc-cc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 4444455654 3345544434555 33 788999999999888765422 3445555543333333322222222222
Q ss_pred cc------ccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 530 CE------AMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 530 ce------~~~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
|. ...+++ .+||.+-+.- ...+.-+...++.|+-|+|+|||++|.-
T Consensus 162 ~~~~~~~~~~~~fedn~fd~v~~ld---~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 162 CNFVVADFGKMPFEDNTFDGVRFLE---VVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cceehhhhhcCCCCccccCcEEEEe---ecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 21 123455 8999755411 1123355679999999999999999985
No 383
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.19 E-value=0.17 Score=54.38 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=32.1
Q ss_pred cCCCC-CCCeeEEEecccccccccCh--HHHHHHHHhcccCCcEEEEEeC
Q 006662 275 RLPYP-SRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 275 ~Lpf~-~~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~Liis~p 321 (636)
+++++ ...|++|+...-|.|..... ...++.+..+++|||.|+|..+
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 45554 34677777655554433211 3488999999999999999976
No 384
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.05 E-value=0.15 Score=48.00 Aligned_cols=93 Identities=20% Similarity=0.110 Sum_probs=52.7
Q ss_pred CCcEEEEeCCCCcHHHHHHhh-----c-CCEEEEcCcCCchHHHHHHHHHc----C----CCeEEEEeccccCCCCCCCe
Q 006662 218 SIRTAIDTGCGVASWGAYLMS-----R-NILAVSFAPRDTHEAQVQFALER----G----VPALIGVMASIRLPYPSRAF 283 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~-----~-~v~vv~i~p~Dis~a~l~~A~er----g----~~~~~~~~d~~~Lpf~~~sF 283 (636)
....|+|+|||-|.++..|+. . +..++++ |.++..++.+.++ + ....+...+..... .....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~i---D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGI---DCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEE---ECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 345899999999999999998 3 6666677 6666666655433 2 11222222221111 13455
Q ss_pred eEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~p 321 (636)
++++. | |-..+. ..+|+...+ |+-.+++..|
T Consensus 101 ~~~vg---L-HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 101 DILVG---L-HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred eEEEE---e-ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 66654 3 333344 455555544 6666655544
No 385
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.03 E-value=0.058 Score=52.05 Aligned_cols=95 Identities=8% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc----cchhhccccccCCC--C-Cccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQNWCEAMSTY--P-RTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----i~~~~~~ce~~~~y--p-~t~Dl~H~~~ 547 (636)
....+|||+|||.|.++..|+++. -.|+.+|.++.+++.+.++-- +.+++ ..+..+ + ..||.|=++-
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECC
Confidence 345689999999999999999873 356666776677777766521 22333 333333 3 3578765533
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
-|.. ..-.+..+ ++.. -+.++|.+++..
T Consensus 86 Py~~--~~~~i~~~-l~~~-~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNI--STPILFKL-LEEP-PAFRDAVLMVQK 113 (169)
T ss_pred Cccc--HHHHHHHH-HhcC-CCcceEEEEEEH
Confidence 3321 11222233 3322 256899998874
No 386
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.77 E-value=0.4 Score=48.83 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=63.1
Q ss_pred ccCCCCCcEEEEeCCCCcHHHHHHhhc----C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC----CCCCe
Q 006662 213 NLKDGSIRTAIDTGCGVASWGAYLMSR----N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY----PSRAF 283 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCGtG~~a~~La~~----~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf----~~~sF 283 (636)
++.+|. +||-+|..+|....++++- | +.++.+++. .-...+..|.+|. ++.-...|+ +.|. --+.+
T Consensus 70 ~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r-~~rdL~~la~~R~-NIiPIl~DA-r~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR-SMRDLLNLAKKRP-NIIPILEDA-RHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHHHHHST-TEEEEES-T-TSGGGGTTTS--E
T ss_pred CCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecch-hHHHHHHHhccCC-ceeeeeccC-CChHHhhcccccc
Confidence 455666 9999999999888888764 2 455666552 2336667777664 444344444 3341 12479
Q ss_pred eEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|++--+- ++. +.++.++...||+||.++++.
T Consensus 145 DvI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 145 DVIFQDVAQ----PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEecCCC----hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999984321 244 678889999999999999985
No 387
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.53 E-value=0.35 Score=51.02 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=67.7
Q ss_pred HHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHH----cCC-CeEEEEeccccC-C-
Q 006662 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRL-P- 277 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~e----rg~-~~~~~~~d~~~L-p- 277 (636)
....+...++. +|||+.++.|.=+..+++. ...++.. |++...++...+ -|. .+.....|.... +
T Consensus 77 ~~~~L~~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A~---D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 77 VALALDPQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVAN---DISPKRLKRLKENLKRLGVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHTTTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEEE---ESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred ccccccccccc--cccccccCCCCceeeeeecccchhHHHHh---ccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence 34444444555 8999999999888888776 2344444 777776665443 244 344444555444 1
Q ss_pred CCCCCeeEEEe----cccccccccCh------------------HHHHHHHHhcc----cCCcEEEEEeC
Q 006662 278 YPSRAFDMAHC----SRCLIPWGQYD------------------GLYLIEVDRVL----RPGGYWILSGP 321 (636)
Q Consensus 278 f~~~sFDlV~~----s~~L~h~~~d~------------------~~~L~el~RvL----KPGG~Liis~p 321 (636)
.....||.|+. +..- .+..++ ..+|..+.+.| ||||+++.++-
T Consensus 152 ~~~~~fd~VlvDaPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHTTTEEEEEEECSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred ccccccchhhcCCCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 23346999994 3221 111111 25788999999 99999999974
No 388
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=93.50 E-value=0.061 Score=54.92 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCe-EEEEecCCCCCccchHHH----Hhhcc----c
Q 006662 453 DTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVI----YERGL----I 523 (636)
Q Consensus 453 d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~----~eRgl----i 523 (636)
.++-|...... ...+.. .+.-+|||.-.|+|=+|..-++++- .|.. +.+|. |-|+.+ +.|+| |
T Consensus 116 ~tdP~~Dt~~K----v~~V~~-~~G~rVLDtC~GLGYtAi~a~~rGA~~Vit-vEkdp--~VLeLa~lNPwSr~l~~~~i 187 (287)
T COG2521 116 GTDPLEDTLAK----VELVKV-KRGERVLDTCTGLGYTAIEALERGAIHVIT-VEKDP--NVLELAKLNPWSRELFEIAI 187 (287)
T ss_pred CcCcHHHHHhh----hheecc-ccCCEeeeeccCccHHHHHHHHcCCcEEEE-EeeCC--CeEEeeccCCCCcccccccc
Confidence 34456655432 112444 6688999999999999988887765 2222 22222 233332 33444 3
Q ss_pred chhh-ccccccCCCC-Cccce-eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--------eCHHHHHHHHHHHh
Q 006662 524 GTYQ-NWCEAMSTYP-RTYDL-IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--------DDVDILVKIKSITD 592 (636)
Q Consensus 524 ~~~~-~~ce~~~~yp-~t~Dl-~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------d~~~~~~~~~~~~~ 592 (636)
-+++ |--|...+|+ .+||. ||=--=||.-. .=--+.+-.|+.|||||||.+.=- --.+....|.+.+.
T Consensus 188 ~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr 266 (287)
T COG2521 188 KIILGDAYEVVKDFDDESFDAIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR 266 (287)
T ss_pred EEecccHHHHHhcCCccccceEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence 3444 4447778898 78994 78655566433 111157889999999999998753 12346667777777
Q ss_pred cCCCceEEec
Q 006662 593 GMEWEGRIAD 602 (636)
Q Consensus 593 ~~~W~~~~~~ 602 (636)
+.-..+.-..
T Consensus 267 ~vGF~~v~~~ 276 (287)
T COG2521 267 RVGFEVVKKV 276 (287)
T ss_pred hcCceeeeee
Confidence 7777654443
No 389
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.48 E-value=0.21 Score=54.94 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=33.6
Q ss_pred CCCCCCeeEEEecccccccccCh-H-------------------------------------HHHHHHHhcccCCcEEEE
Q 006662 277 PYPSRAFDMAHCSRCLIPWGQYD-G-------------------------------------LYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 277 pf~~~sFDlV~~s~~L~h~~~d~-~-------------------------------------~~L~el~RvLKPGG~Lii 318 (636)
-||.++.++++++.++ ||.... + .+|+.=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 3889999999999999 886431 1 133334566899999999
Q ss_pred EeCCC
Q 006662 319 SGPPV 323 (636)
Q Consensus 319 s~p~~ 323 (636)
+....
T Consensus 236 ~~~Gr 240 (386)
T PLN02668 236 VCLGR 240 (386)
T ss_pred EEecC
Confidence 96533
No 390
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.37 E-value=0.42 Score=51.70 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=68.4
Q ss_pred ccCCCCCcEEEEeCCC-CcHHHHHHhh-cCCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 213 NLKDGSIRTAIDTGCG-VASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCG-tG~~a~~La~-~~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
...+|+ +|+=+|+| .|..+..+++ .+..++.+ |.+++..+.|++-|....+...+.....--.+.||+|+..-
T Consensus 163 ~~~pG~--~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 163 NVKPGK--WVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 345565 88888877 5588888888 48877777 88999999999887654443222222221122499998743
Q ss_pred cccccccChHHHHHHHHhcccCCcEEEEEeCC
Q 006662 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 291 ~L~h~~~d~~~~L~el~RvLKPGG~Liis~p~ 322 (636)
. ...+....+.||+||.+++.+-+
T Consensus 238 ~--------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G--------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C--------hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 35678889999999999999753
No 391
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.37 E-value=0.23 Score=48.32 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=43.3
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCC--CCCCC-eeEEEecc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP--YPSRA-FDMAHCSR 290 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lp--f~~~s-FDlV~~s~ 290 (636)
.|||+.||.|..+..+|+....++++ |+++..++.|+.+ |+ .+.+..+|...+. +..+. ||+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viai---did~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAI---DIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEE---ES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 79999999999999999997777777 8888888888754 33 4778877765432 12122 78888754
No 392
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.05 Score=54.79 Aligned_cols=91 Identities=25% Similarity=0.314 Sum_probs=53.2
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcc--cch--hhcc-ccccCCCC--Cccceeeecc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGT--YQNW-CEAMSTYP--RTYDLIHADS 547 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--i~~--~~~~-ce~~~~yp--~t~Dl~H~~~ 547 (636)
.....||++|||.|=-+|-|++. +-.|+-++.- .+|.-...+-| .|. ++.- .....-|| .-||.|+..+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l---~~~V~siEr~-~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta 146 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARL---VGRVVSIERI-EELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA 146 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHH---hCeEEEEEEc-HHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEee
Confidence 44689999999999555555443 1234444443 44444444433 121 3322 24555577 6799998732
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
-+ -.++.-|+| -|+|||.+|+=
T Consensus 147 aa------~~vP~~Ll~---QL~~gGrlv~P 168 (209)
T COG2518 147 AA------PEVPEALLD---QLKPGGRLVIP 168 (209)
T ss_pred cc------CCCCHHHHH---hcccCCEEEEE
Confidence 22 234555554 69999999984
No 393
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=93.27 E-value=0.096 Score=51.11 Aligned_cols=99 Identities=22% Similarity=0.321 Sum_probs=52.8
Q ss_pred CCcceEeeecccch--hhhhhhcCCCeEEEEecCCCCCc--cchHHHHhhcc------c-chhhcccccc--CCC-CCcc
Q 006662 475 GRYRNLLDMNAYLG--GFAAALVDDPLWVMNTVPVEAKI--NTLGVIYERGL------I-GTYQNWCEAM--STY-PRTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~g--gfaa~l~~~~v~~mnv~~~~~~~--~~l~~~~eRgl------i-~~~~~~ce~~--~~y-p~t~ 540 (636)
.+.++||++|||.| |.+++... + ...|+-+|.++ ..+....++.. + -...+|.+.. ... ++.|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~--~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-G--AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T---SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhcc-C--CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45789999999998 55555441 1 12233334432 23334444322 1 1334898744 112 4789
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 541 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 541 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
|+|-+.-++=. .-..+.++-=+.++|.|+|.+++..
T Consensus 121 D~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99998444322 1234688888999999999988863
No 394
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.24 E-value=0.47 Score=51.36 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=40.1
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc------------C------CE--EEEcCcCCchHHHHHHHHH-----cCCCeEEE
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR------------N------IL--AVSFAPRDTHEAQVQFALE-----RGVPALIG 269 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~------------~------v~--vv~i~p~Dis~a~l~~A~e-----rg~~~~~~ 269 (636)
.....-+|+|+||..|..+..+... + +. .-|+-..|.+.-....... ...++...
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3445568999999999877766542 1 12 2355555655433222211 12232222
Q ss_pred -E-eccccCCCCCCCeeEEEeccccccccc
Q 006662 270 -V-MASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 270 -~-~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
+ +....--||+++.|+++++.++ ||..
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred ecCchhhhccCCCCceEEEEEechh-hhcc
Confidence 2 2233333899999999999999 7753
No 395
>PLN02476 O-methyltransferase
Probab=92.81 E-value=0.37 Score=50.84 Aligned_cols=127 Identities=16% Similarity=0.235 Sum_probs=73.3
Q ss_pred CcceEeeecccchhhhhhhcC----CC-eEEEEecCCCCCccchHH----HHhhcc---cchhh-ccccccCCC-----C
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----DP-LWVMNTVPVEAKINTLGV----IYERGL---IGTYQ-NWCEAMSTY-----P 537 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~----~~eRgl---i~~~~-~~ce~~~~y-----p 537 (636)
+.++||++|+++|..+.+|+. .+ |+++ |..+....+ +-+-|+ |-+.+ +-.+.+..+ +
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~Ti-----E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVAC-----ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEE-----ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 478999999999999988865 22 3333 332223333 234455 11111 212222222 3
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------C---HHHHHHHHH----HHhcCCCceEEe
Q 006662 538 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------D---VDILVKIKS----ITDGMEWEGRIA 601 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~---~~~~~~~~~----~~~~~~W~~~~~ 601 (636)
.+||+|=.++ +.-....++-..-+.|||||.+|+-+ . ......|++ +...=+++..+.
T Consensus 193 ~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll 266 (278)
T PLN02476 193 SSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV 266 (278)
T ss_pred CCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 5899987643 22345677888889999999998841 1 011123333 455556777765
Q ss_pred ccCCCCCCcceEEEEEec
Q 006662 602 DHENGPRQREKILFANKK 619 (636)
Q Consensus 602 ~~e~~~~~~~~~l~~~K~ 619 (636)
-. .+.+++++|+
T Consensus 267 Pi------gDGl~i~~K~ 278 (278)
T PLN02476 267 PI------GDGMTICRKR 278 (278)
T ss_pred Ee------CCeeEEEEEC
Confidence 32 3678888874
No 396
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.81 E-value=1.1 Score=49.00 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=74.1
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEE--------------------------------------EcCc
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAV--------------------------------------SFAP 248 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv--------------------------------------~i~p 248 (636)
.|..+....++ ..++|-=||+|.+..+.+-.+.... -+.+
T Consensus 182 Ail~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 182 AILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34444334444 3899999999999988776542000 0224
Q ss_pred CCchHHHHHHHHHc----CCC--eEEEEeccccCCCCCCCeeEEEecccccccccCh-------HHHHHHHHhcccCCcE
Q 006662 249 RDTHEAQVQFALER----GVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-------GLYLIEVDRVLRPGGY 315 (636)
Q Consensus 249 ~Dis~a~l~~A~er----g~~--~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPGG~ 315 (636)
.|++..+++.|+.+ |+. +.|.++|...++-+-+.+|+|+|+.-.-.-..+. ..+.+.+.+.++--+.
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCce
Confidence 48888888888654 544 7889999888875547899999986331111111 2345566678888888
Q ss_pred EEEEeC
Q 006662 316 WILSGP 321 (636)
Q Consensus 316 Liis~p 321 (636)
++++++
T Consensus 340 ~v~tt~ 345 (381)
T COG0116 340 YVFTTS 345 (381)
T ss_pred EEEEcc
Confidence 888865
No 397
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.58 E-value=0.12 Score=51.78 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=53.2
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh----hcc--cchhh-ccccccCCCCCccceeeeccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 550 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--i~~~~-~~ce~~~~yp~t~Dl~H~~~~fs 550 (636)
.+|||++||+|.++..++.+.. -.|+.++..+..+..+.+ -|+ +-+++ |+.+.+......||+|=++-=|-
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 4799999999999975444432 244444555445444432 122 22222 33222221224699887755442
Q ss_pred cCCCCcCHHHHHHHH--hhcccCCcEEEEEeCH
Q 006662 551 LYKDRCEMEDVLLEM--DRILRPEGSVIIRDDV 581 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~ 581 (636)
.. ..+.++--+ -.+|.|+|.+++.-..
T Consensus 133 ---~g-~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 ---KG-LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ---CC-hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 123333333 3468999999998544
No 398
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.54 E-value=0.22 Score=50.13 Aligned_cols=131 Identities=19% Similarity=0.274 Sum_probs=74.4
Q ss_pred CcceEeeecccchhhhhhhcC----C-CeEEEEecCCCCCccchHHHHhhcc---cchhh-ccccccCCC-----CCccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTY-----PRTYD 541 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~-~~ce~~~~y-----p~t~D 541 (636)
+.++||.+|+++|=-+.+|++ . .|+++-.-|.... -..+.+..-|+ |-+.+ |..+.+.+. +.+||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 478999999999977777763 2 3455444332221 22223344465 23332 333433333 35899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-------------H---HHHHHHHHHHhcCCCceEEeccCC
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-------------V---DILVKIKSITDGMEWEGRIADHEN 605 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------------~---~~~~~~~~~~~~~~W~~~~~~~e~ 605 (636)
+|=.++ +.-....++-.+-+.|||||.+|+-+- . .+.+-.+.+.+.=+.+..+...
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi-- 195 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI-- 195 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS--
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe--
Confidence 987754 223344666667799999999998521 1 1223333445556777776543
Q ss_pred CCCCcceEEEEEec
Q 006662 606 GPRQREKILFANKK 619 (636)
Q Consensus 606 ~~~~~~~~l~~~K~ 619 (636)
.+.|++++|+
T Consensus 196 ----gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ----GDGLTLARKR 205 (205)
T ss_dssp ----TTEEEEEEE-
T ss_pred ----CCeeEEEEEC
Confidence 4688999884
No 399
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.24 E-value=0.92 Score=47.54 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=52.0
Q ss_pred CCcEEEEeCCCC--cHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHH---cCCC--eEEEEeccccCC--CC----CC
Q 006662 218 SIRTAIDTGCGV--ASWGAYLMSR---NILAVSFAPRDTHEAQVQFALE---RGVP--ALIGVMASIRLP--YP----SR 281 (636)
Q Consensus 218 ~~r~VLDIGCGt--G~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~e---rg~~--~~~~~~d~~~Lp--f~----~~ 281 (636)
.++..||||||. ....-.++++ ...++-+ |..+..+..++. .... ..+..+|..+.. +. .+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYV---D~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYV---DNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEE---ESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEE---CCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 456899999993 3456666654 4445444 556555554432 2334 667777754321 00 11
Q ss_pred Cee-----EEEeccccccccc--ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFD-----MAHCSRCLIPWGQ--YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFD-----lV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~Liis~p 321 (636)
-+| .++...+|++..+ ++..++..+...|.||.+|+++..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 222 3455566745543 448999999999999999999964
No 400
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=92.06 E-value=0.34 Score=49.25 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHH-hhccc------ch--------hhccccccCCCC--
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY-ERGLI------GT--------YQNWCEAMSTYP-- 537 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-eRgli------~~--------~~~~ce~~~~yp-- 537 (636)
..-..||+-|||.|--+.+|++++. +|+.+|.++.-++-++ ++++- +. +.-+|..|-.++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 3456799999999999999999985 7788888766666664 45541 11 122455555553
Q ss_pred --CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE-E-e--------CH--HHHHHHHHHHhcCCCceEEec
Q 006662 538 --RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII-R-D--------DV--DILVKIKSITDGMEWEGRIAD 602 (636)
Q Consensus 538 --~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~-d--------~~--~~~~~~~~~~~~~~W~~~~~~ 602 (636)
..||+|.=-+.|-... .-..+.+..-|.++|+|||.+++ + + +. =....|++++. -.|++....
T Consensus 113 ~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp CHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred hcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 3588876434443332 23456999999999999999433 3 1 00 03367777777 777876443
No 401
>PLN02672 methionine S-methyltransferase
Probab=92.03 E-value=0.25 Score=60.83 Aligned_cols=119 Identities=9% Similarity=0.056 Sum_probs=72.4
Q ss_pred ceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh---h----------------cc---cchhh-cccccc
Q 006662 478 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE---R----------------GL---IGTYQ-NWCEAM 533 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e---R----------------gl---i~~~~-~~ce~~ 533 (636)
..|||+|||.|-.+-+|++. +- -.|+.+|.++..+.++.+ + ++ +-+++ ||.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 47999999999999999764 32 145666777677766622 1 11 23333 666544
Q ss_pred CCCCCccceeeecc--------------------------------ccccC--CCCcC-HHHHHHHHhhcccCCcEEEEE
Q 006662 534 STYPRTYDLIHADS--------------------------------IFSLY--KDRCE-MEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 534 ~~yp~t~Dl~H~~~--------------------------------~fs~~--~~~c~-~~~~l~e~dRiLrPgG~~i~~ 578 (636)
......||+|-++= ||..+ .+.-+ +..|+-+.-++|+|||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 21112588754421 11110 11111 247899999999999999997
Q ss_pred eCHHHHHHHH-HHHhcCCCce
Q 006662 579 DDVDILVKIK-SITDGMEWEG 598 (636)
Q Consensus 579 d~~~~~~~~~-~~~~~~~W~~ 598 (636)
-..+.-+.|. +++++..|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 6555556777 5776655544
No 402
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=91.89 E-value=0.38 Score=49.02 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=79.3
Q ss_pred CcceEeeecccchhhhhhhcC----CC-eEEEEecCCCCCccchHHHHhhcc---cchhh--ccccccCC-CCCccceee
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----DP-LWVMNTVPVEAKINTLGVIYERGL---IGTYQ--NWCEAMST-YPRTYDLIH 544 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~eRgl---i~~~~--~~ce~~~~-yp~t~Dl~H 544 (636)
..++||.+|.+.|=-|..|+. .. +.+.-.-|.-.. ...+...+-|+ |-.+. |+-+.++- ...+||+|-
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-IARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-HHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 489999999999866666643 22 333222221111 22333344455 22333 77777774 679999976
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--------------eCHHHHHHHHHHHhcCCCceEEeccCCCCCCc
Q 006662 545 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--------------DDVDILVKIKSITDGMEWEGRIADHENGPRQR 610 (636)
Q Consensus 545 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------------d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~ 610 (636)
.+. +.-.-+..|-+.=++|||||.+|+- +......+|++...-+.|+-+.. +.--| ..
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~lP-~g 209 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD-TVLLP-LG 209 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce-eEEEe-cC
Confidence 521 4445568888899999999999884 11234555666555555543221 11012 23
Q ss_pred ceEEEEEec
Q 006662 611 EKILFANKK 619 (636)
Q Consensus 611 ~~~l~~~K~ 619 (636)
+.++++.|.
T Consensus 210 DGl~v~~k~ 218 (219)
T COG4122 210 DGLLLSRKR 218 (219)
T ss_pred CceEEEeec
Confidence 789999885
No 403
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.62 E-value=0.29 Score=55.34 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=57.8
Q ss_pred CCcceEeeecccchhhhhhhcC----CCeEEEEecCCCCCcc---chHHHHhh-ccc--chhh-cccccc-CCCCCccce
Q 006662 475 GRYRNLLDMNAYLGGFAAALVD----DPLWVMNTVPVEAKIN---TLGVIYER-GLI--GTYQ-NWCEAM-STYPRTYDL 542 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~----~~v~~mnv~~~~~~~~---~l~~~~eR-gli--~~~~-~~ce~~-~~yp~t~Dl 542 (636)
.....||||.|+-||=..+|++ .+.+ +..|.+.. .|.-.++| |+- -+.+ |-. .+ ..+|..||.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~l----vA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~-~~~~~~~~~fD~ 186 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAI----VANEYSASRVKVLHANISRCGVSNVALTHFDGR-VFGAALPETFDA 186 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEE----EEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchh-hhhhhchhhcCe
Confidence 3356899999999997777654 3443 33343333 34444555 441 1111 111 12 245788999
Q ss_pred ee----eccccccCCCC-----c---CH-------HHHHHHHhhcccCCcEEEEE
Q 006662 543 IH----ADSIFSLYKDR-----C---EM-------EDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 543 ~H----~~~~fs~~~~~-----c---~~-------~~~l~e~dRiLrPgG~~i~~ 578 (636)
|- |+|.=..-++- - ++ ..||...-+.|||||.+|.+
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 88 55442222110 0 11 27889999999999999987
No 404
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.49 E-value=0.11 Score=47.12 Aligned_cols=45 Identities=29% Similarity=0.555 Sum_probs=29.7
Q ss_pred CeeEEEecccc--ccc--ccCh-HHHHHHHHhcccCCcEEEEEeCCCCcccc
Q 006662 282 AFDMAHCSRCL--IPW--GQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESH 328 (636)
Q Consensus 282 sFDlV~~s~~L--~h~--~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~ 328 (636)
.||+|+|..+. +|. .++. ..+++.+.+.|+|||.|++.- ..|+..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp--Q~w~sY 50 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP--QPWKSY 50 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-----HHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC--CCcHHH
Confidence 48999996654 222 2222 579999999999999999983 345443
No 405
>PLN02823 spermine synthase
Probab=91.30 E-value=1.2 Score=48.21 Aligned_cols=99 Identities=10% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHhhcccchhh-------------ccccccCCCCCcc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPRTY 540 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgli~~~~-------------~~ce~~~~yp~t~ 540 (636)
...++||-+|+|.|+.+..+.+. ++--+-+|..|. ..++++.+. ++..+ |=-+-+..-++.|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~--~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKH--LTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHh--cccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 35789999999999999988775 453344444444 577766553 22111 0000111124689
Q ss_pred ceeeeccccccCC-CCcC--H-HHHHH-HHhhcccCCcEEEEE
Q 006662 541 DLIHADSIFSLYK-DRCE--M-EDVLL-EMDRILRPEGSVIIR 578 (636)
Q Consensus 541 Dl~H~~~~fs~~~-~~c~--~-~~~l~-e~dRiLrPgG~~i~~ 578 (636)
|+|=++ ++.-.. ..|. . ...+- .+.|.|+|||.+++.
T Consensus 178 DvIi~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 178 DVIIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cEEEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 998886 332111 1121 1 23444 688999999999874
No 406
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=91.25 E-value=0.37 Score=47.79 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=63.0
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~erg-----~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~ 295 (636)
.+.|+|.|+|.++...++..-.++.+ +.++...+.|.++- .+..+..+|+....| ...|+|+|-..=.-+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAi---E~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAI---EKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEE---ecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 79999999998887777764444444 44556666676661 356777778777666 468999984321112
Q ss_pred ccCh-HHHHHHHHhcccCCcEEEEE
Q 006662 296 GQYD-GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 296 ~~d~-~~~L~el~RvLKPGG~Liis 319 (636)
..++ ..++..+...||-.+.++=.
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccccH
Confidence 2222 56788888888988887643
No 407
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=91.14 E-value=0.52 Score=49.83 Aligned_cols=131 Identities=22% Similarity=0.274 Sum_probs=84.2
Q ss_pred cCCCCCcceEeeecccchhhhh-hhcCCCeEEEEecCCCCC----ccchHHHHhhcccchhh-ccccccCC--CC---Cc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAA-ALVDDPLWVMNTVPVEAK----INTLGVIYERGLIGTYQ-NWCEAMST--YP---RT 539 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa-~l~~~~v~~mnv~~~~~~----~~~l~~~~eRgli~~~~-~~ce~~~~--yp---~t 539 (636)
|...++--.||||-||.|-.-- +|.+.+--+.+|.=.|-+ +.--..|.+|||-++.. .-..+|.. |- -.
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCC
Confidence 4333677889999999874311 112222111122222222 24557899999955422 11123332 42 45
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhc----CCCceEEe
Q 006662 540 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDG----MEWEGRIA 601 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~----~~W~~~~~ 601 (636)
++|+-.+|||.+..+.-.+..-|-=+-++|.|||++|.+-.. -.++.|...+++ --|-++..
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 789999999999998877788899999999999999999754 366777777765 36877743
No 408
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.01 E-value=1.3 Score=46.70 Aligned_cols=98 Identities=9% Similarity=0.106 Sum_probs=55.9
Q ss_pred CcEEEEeCCCCcHHHHHH-hhc---CCEEEEcCcCCchHHHHHHHHHc-------CCCeEEEEeccccCCCCCCCeeEEE
Q 006662 219 IRTAIDTGCGVASWGAYL-MSR---NILAVSFAPRDTHEAQVQFALER-------GVPALIGVMASIRLPYPSRAFDMAH 287 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~L-a~~---~v~vv~i~p~Dis~a~l~~A~er-------g~~~~~~~~d~~~Lpf~~~sFDlV~ 287 (636)
+.+|+=||||.=-++..+ +++ +..+..+ |+++++++.+++- +..+.+..+|....+..-..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~i---D~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNI---DIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEE---ESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEE
Confidence 459999999976555554 433 3344455 7788887777431 3457888888777665557899999
Q ss_pred eccccccccc-ChHHHHHHHHhcccCCcEEEEEe
Q 006662 288 CSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 288 ~s~~L~h~~~-d~~~~L~el~RvLKPGG~Liis~ 320 (636)
..... .... +...++..+.+.++||..+++..
T Consensus 198 lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 198 LAALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp E-TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred Ehhhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 86544 3333 34899999999999999999984
No 409
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.73 E-value=0.35 Score=48.59 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHhhcC
Q 006662 221 TAIDTGCGVASWGAYLMSRN 240 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~ 240 (636)
.+.|||||.|.+...|+...
T Consensus 63 efaDIGCGyGGLlv~Lsp~f 82 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKF 82 (249)
T ss_pred eEEeeccCccchhhhccccC
Confidence 68999999999999999884
No 410
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=90.63 E-value=1.4 Score=45.76 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=68.7
Q ss_pred cceEeeecccchhhhhhhcC----C-CeEEEEecCCCCCccchHHHHh----hcccc-hh---hccccccCCCCCcccee
Q 006662 477 YRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYE----RGLIG-TY---QNWCEAMSTYPRTYDLI 543 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~e----Rgli~-~~---~~~ce~~~~yp~t~Dl~ 543 (636)
...|||.|.|.|.+.++|+. . .|++.-. .+...++|.+ -||.- +- .|-++.. .+..||.|
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~-----r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vDav 167 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI-----REDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVDAV 167 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEe-----cHHHHHHHHHHHHHhccccceEEEeccccccc--cccccCEE
Confidence 77999999999999999983 3 3444333 3344444432 25533 11 1444322 23478877
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCC
Q 006662 544 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEW 596 (636)
Q Consensus 544 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W 596 (636)
-. +--+-..+|--++.+|+|||.+++- -..+++.++-+.++..+|
T Consensus 168 ~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 168 FL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred EE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 76 4444558999999999999999885 456666666666666665
No 411
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=90.25 E-value=0.35 Score=44.71 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=27.8
Q ss_pred EEEEeCCCCcHHHHHHhhcCC--EEEEcCcCCchHHHHHHHH
Q 006662 221 TAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFAL 260 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v--~vv~i~p~Dis~a~l~~A~ 260 (636)
++||||||.|.++..+++.+. .++.+ +.++.+.+.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~---E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAF---EPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEE---ecCHHHHHHHH
Confidence 489999999999999988743 46677 55666655544
No 412
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=90.15 E-value=0.8 Score=49.00 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=37.3
Q ss_pred Cccceeeeccccc-cCCCCcCHHHHHHHHhhcccCCcEEEEE--eCHHHHHHHHHHHhcCCCce
Q 006662 538 RTYDLIHADSIFS-LYKDRCEMEDVLLEMDRILRPEGSVIIR--DDVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 538 ~t~Dl~H~~~~fs-~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~~~~~~~~~~~~~W~~ 598 (636)
..||++-|--.|- .+..--...-.|.-+-+-|||||+||=+ |...++.+++.. ...+|--
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gN 257 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGN 257 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcc
Confidence 3499987633322 1112222346788899999999999998 444466777765 3335543
No 413
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.06 E-value=0.37 Score=54.25 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC-CeEEEEecc
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMAS 273 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~-~~~~~~~d~ 273 (636)
++.+...+.+.+.+..+. .+||+-||||.++..+++.-..++++ ++++..++.|+++ ++ ++.|.++.+
T Consensus 368 aevLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~ViGv---Ei~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKRVIGV---EISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred HHHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhccccceeee---ecChhhcchhhhcchhcCccceeeeecch
Confidence 344455566666666665 89999999999999999985445555 6666666666543 43 467776633
No 414
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.04 E-value=0.091 Score=46.41 Aligned_cols=95 Identities=17% Similarity=0.063 Sum_probs=35.6
Q ss_pred EEeCCCCcHHHHHHhhc----C-CEEEEcCcCCchHHHHHHHHHcC--CCeEEEEeccccC-C-CCCCCeeEEEeccccc
Q 006662 223 IDTGCGVASWGAYLMSR----N-ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL-P-YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 223 LDIGCGtG~~a~~La~~----~-v~vv~i~p~Dis~a~l~~A~erg--~~~~~~~~d~~~L-p-f~~~sFDlV~~s~~L~ 293 (636)
||||+..|..+..+++. + ..++.+++....+...+..++.+ ..+.+..++..+. + ++.++||+|+.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C-
Confidence 68999999888887764 2 13444522221112333333222 2467776665432 1 3357899998743 2
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEE
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
|-.+.....+..+.+.|+|||.+++.
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22223367788999999999999875
No 415
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.03 E-value=1.3 Score=48.06 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=63.4
Q ss_pred CcEEEEeCCCCcHHHHHHhhcC-CEEEEcCcCCchHHHHHHHHHc--------C----CCeEEEEeccccC-CCCCCCee
Q 006662 219 IRTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER--------G----VPALIGVMASIRL-PYPSRAFD 284 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~-v~vv~i~p~Dis~a~l~~A~er--------g----~~~~~~~~d~~~L-pf~~~sFD 284 (636)
.++||-+|.|.|--++++.+.- +. .|...|+++.+++++++. + +.+.+...|+... .-..+.||
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~--qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVE--QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcc--eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4689999999999999999873 21 233336677787777522 1 2244444443322 22356899
Q ss_pred EEEecccccccccCh-----HHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~-----~~~L~el~RvLKPGG~Liis~p 321 (636)
.|+.-. ..+-.+.. ..+..-+.|.|+++|.+++...
T Consensus 368 ~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 998632 11111111 3677888999999999999854
No 416
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=89.74 E-value=0.31 Score=49.90 Aligned_cols=97 Identities=5% Similarity=0.009 Sum_probs=62.9
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHh-hccc--------------chhhccccccCCCC----
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE-RGLI--------------GTYQNWCEAMSTYP---- 537 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e-Rgli--------------~~~~~~ce~~~~yp---- 537 (636)
...||+.|||-|-=+.+|++++. .|+.+|.++.-+...++ .|+- +.+.-+|..|-..+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 46899999999999999999876 45666666555555444 2221 11223445454443
Q ss_pred --CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 538 --RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 538 --~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
..||+|---+.|-... .-....+..-|-++|||||.+++
T Consensus 121 ~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 3578755444443332 12345899999999999998877
No 417
>PRK00536 speE spermidine synthase; Provisional
Probab=89.60 E-value=1.7 Score=45.53 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=61.4
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhc-c---c-----cccCCCCCccc
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQN-W---C-----EAMSTYPRTYD 541 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~-~---c-----e~~~~yp~t~D 541 (636)
+.. +..++||=+|.|-||-+.-+.+.+- +|+-++.-+..+.+..+ ..+..|. + - ........+||
T Consensus 68 ~~h-~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~--~lP~~~~~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 68 CTK-KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFIS--FFPHFHEVKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred hhC-CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHH--HCHHHHHhhcCCCEEEeehhhhccCCcCC
Confidence 344 6789999999999999999999873 44434433234443333 1121210 0 0 00111247899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 542 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 542 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+|=.+.+|+ +...-.+.|.|+|||.++..
T Consensus 142 VIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 999988776 45557789999999999996
No 418
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=89.04 E-value=2.8 Score=44.69 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhccCCCC---CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc-----CC--CeEE
Q 006662 201 ADAYIDDIGKLINLKDGS---IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GV--PALI 268 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~---~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er-----g~--~~~~ 268 (636)
.-.|+..|.++|...... ..++||||+|...+-..|..+ +...++. |+++..++.|+++ +. .+.+
T Consensus 82 R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaT---dID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVAT---DIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred hHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEe---cCCHHHHHHHHHHHHhccccccceEE
Confidence 445888888888643322 358999999987554444433 6655555 8888888887633 22 2444
Q ss_pred EEecccc-----CCCCCCCeeEEEecccc
Q 006662 269 GVMASIR-----LPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 269 ~~~d~~~-----Lpf~~~sFDlV~~s~~L 292 (636)
....... +-.+.+.||+.+|+--+
T Consensus 159 ~~~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 159 RKQKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp EE--ST-SSTTTSTT--S-EEEEEE----
T ss_pred EEcCCccccchhhhcccceeeEEecCCcc
Confidence 3332211 11234689999999866
No 419
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=89.03 E-value=0.43 Score=51.49 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=56.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCC---ccchHHHHhhcc---cchhhccccccCCCC-Cccceeee--c
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAK---INTLGVIYERGL---IGTYQNWCEAMSTYP-RTYDLIHA--D 546 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~---~~~l~~~~eRgl---i~~~~~~ce~~~~yp-~t~Dl~H~--~ 546 (636)
+.++|||+|||+|-....=++.+ .-.|..++.+ .-..+++.+-|+ |.+++.--|.. --| .-.|+|-+ .
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 37899999999996543333332 1222333333 234556667776 44444333433 345 77787664 2
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006662 547 SIFSLYKDRCEMEDVLLEMDRILRPEGSVII 577 (636)
Q Consensus 547 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 577 (636)
|-|-++.+ .+..+|.-=||.|.|||.++=
T Consensus 137 Gy~Ll~Es--MldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYES--MLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhh--hhhhhhhhhhhccCCCceEcc
Confidence 22222222 245788888999999998763
No 420
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=88.92 E-value=2.7 Score=46.12 Aligned_cols=125 Identities=11% Similarity=0.154 Sum_probs=70.5
Q ss_pred ceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh-ccccccCC-CCCccceeeecccc
Q 006662 478 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YPRTYDLIHADSIF 549 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~~ce~~~~-yp~t~Dl~H~~~~f 549 (636)
++|||++||+|.|+..|+.+. ..|+.+|..+..+..+.+. |+ +-.+. |. +.+.. .-..||+|-+|=
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~DP-- 308 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVNP-- 308 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEECC--
Confidence 589999999999999998764 3566777766677666543 22 11111 11 11111 113488876642
Q ss_pred ccCCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCceE---EeccCCCCCCcceEEEE
Q 006662 550 SLYKDRCEM-EDVLLEMDRILRPEGSVIIRDDVD-ILVKIKSITDGMEWEGR---IADHENGPRQREKILFA 616 (636)
Q Consensus 550 s~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~ 616 (636)
.|-.+ +.++-.+. -|+|++.++++-+.. ..+-++.+ -.|++. .+|--.....=|-|.+.
T Consensus 309 ----Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~~DmFPqT~HvE~v~ll 372 (374)
T TIGR02085 309 ----PRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERVQLFDMFPHTSHYEVLTLL 372 (374)
T ss_pred ----CCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEEeccCCCCCcEEEEEEE
Confidence 22222 33333333 479999999996655 44555555 247765 33433333333555443
No 421
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.88 E-value=4 Score=44.54 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=64.1
Q ss_pred hccCCCCCcEEEEeCCCC-cHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-----C-CC-CCC
Q 006662 212 INLKDGSIRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----L-PY-PSR 281 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-----L-pf-~~~ 281 (636)
....++. +||.+|||. |..+..+++. +. .++.+ +.++...+.+++.+. ..+......+ + .+ ...
T Consensus 180 ~~~~~g~--~VlV~g~G~vG~~~~~la~~~g~~~vi~~---~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 180 AEVKPGD--TVAVWGCGPVGLFAARSAKLLGAERVIAI---DRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred ccCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCC
Confidence 3344444 899999987 8888888876 54 35555 667788888877631 2222111110 0 11 234
Q ss_pred CeeEEEeccccc--------------ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLI--------------PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~--------------h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.+|+|+..-.-. +-..+....+.++.+.|+|+|.+++.+.
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 699998642110 0112345688999999999999999864
No 422
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=88.78 E-value=2.6 Score=44.30 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHHHHh-------hccc
Q 006662 452 EDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE-------RGLI 523 (636)
Q Consensus 452 ~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e-------Rgli 523 (636)
-.|+.|.+.|..=.+ .... -+.-.++|+|||.|.-+-.|... += --|..+|-++..+..+-| .|-|
T Consensus 128 pETEE~V~~Vid~~~---~~~~-~~~~~ildlgtGSGaIslsll~~L~~--~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 128 PETEEWVEAVIDALN---NSEH-SKHTHILDLGTGSGAISLSLLHGLPQ--CTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ccHHHHHHHHHHHHh---hhhh-cccceEEEecCCccHHHHHHHhcCCC--ceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 357889888763222 1222 22338999999999888887653 21 122334444344444433 3447
Q ss_pred chhhc-cc-cccCCCC---Cccceeeecc--ccc-----------cCC--------CCcC--HHHHHHHHhhcccCCcEE
Q 006662 524 GTYQN-WC-EAMSTYP---RTYDLIHADS--IFS-----------LYK--------DRCE--MEDVLLEMDRILRPEGSV 575 (636)
Q Consensus 524 ~~~~~-~c-e~~~~yp---~t~Dl~H~~~--~fs-----------~~~--------~~c~--~~~~l~e~dRiLrPgG~~ 575 (636)
++.|. .- +.+.++| ..+|+|-+|- +++ .|. ..|. +-.++.=.-|.|+|||.+
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 77763 22 5777887 8888876642 222 111 1121 114566678999999999
Q ss_pred EEEeC-----HHHHHHHHH-HHhcCCCceEEeccCCCCCCcceEEEEEe
Q 006662 576 IIRDD-----VDILVKIKS-ITDGMEWEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 576 i~~d~-----~~~~~~~~~-~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
++.-. ...+..+.. ..+.--|.+.++.. -.+.+++++-.+
T Consensus 282 ~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~D---f~~~~Rfv~i~r 327 (328)
T KOG2904|consen 282 QLELVERKEHSYLVRIWMISLKDDSNGKAAVVSD---FAGRPRFVIIHR 327 (328)
T ss_pred EEEecccccCcHHHHHHHHhchhhccchhheeec---ccCCcceEEEEe
Confidence 99632 223333333 34555566555421 124566665543
No 423
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.64 E-value=8.2 Score=39.05 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=66.2
Q ss_pred hccCCCCCcEEEEeCCCCcHHHHHHhhc---C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCC----CCCCe
Q 006662 212 INLKDGSIRTAIDTGCGVASWGAYLMSR---N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY----PSRAF 283 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~---~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf----~~~sF 283 (636)
+++.+++ +||=+|+-+|....++++- | +.++.+++... .+.+..|.+|. ++.-...|+ +.|. --+..
T Consensus 72 ~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCC-Cceeeeccc-CCcHHhhhhcccc
Confidence 3455666 9999999999887777764 4 56778877443 36667776664 222222333 3441 12458
Q ss_pred eEEEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
|+|+.--+ .+++ +.+..++...||+||+++++.
T Consensus 147 Dviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 147 DVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 99987322 1233 678889999999999888874
No 424
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=88.61 E-value=2.8 Score=39.85 Aligned_cols=96 Identities=25% Similarity=0.281 Sum_probs=56.7
Q ss_pred EEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCC--CCCCCeeEEEecccccccccCh--------HHHHHHH
Q 006662 243 AVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQYD--------GLYLIEV 306 (636)
Q Consensus 243 vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lp--f~~~sFDlV~~s~~L~h~~~d~--------~~~L~el 306 (636)
+.+| |+.+.+++.++++ +. .+.+...+-+.+. .+.+.+|+|+.+....+-.+.. -.+++.+
T Consensus 2 VyaF---DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 2 VYAF---DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEE---ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred EEEE---ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 3455 8899998887655 22 3666655545554 2335899999987664543211 2688999
Q ss_pred HhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHh
Q 006662 307 DRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSL 353 (636)
Q Consensus 307 ~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l 353 (636)
.++|+|||.+++...+. |. .=.++.+.+++.++.+
T Consensus 79 l~lL~~gG~i~iv~Y~G----H~--------gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG----HP--------GGKEESEAVEEFLASL 113 (140)
T ss_dssp HHHEEEEEEEEEEE--S----TC--------HHHHHHHHHHHHHHTS
T ss_pred HHhhccCCEEEEEEeCC----CC--------CCHHHHHHHHHHHHhC
Confidence 99999999999996521 11 1123455566666665
No 425
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=88.61 E-value=0.63 Score=46.88 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=82.5
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEecCCCCCccchHH----HHhhcccc----hhhccccc-------cCCCCCccce
Q 006662 479 NLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGV----IYERGLIG----TYQNWCEA-------MSTYPRTYDL 542 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~eRgli~----~~~~~ce~-------~~~yp~t~Dl 542 (636)
.||.+|+|+|--|++++.. |- +.--|+|...+.+.- +.+.|+.- +.-|-++. -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999988888764 32 234566766444433 34666622 11122222 2235689997
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE------------------------eC---HHHHHHHHHHHhcCC
Q 006662 543 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR------------------------DD---VDILVKIKSITDGME 595 (636)
Q Consensus 543 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~------------------------d~---~~~~~~~~~~~~~~~ 595 (636)
|-|..++-.-. ....+-+|.+..|+|+|||.+++- |. .--++.|.+++..-.
T Consensus 106 i~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 66644432211 122368999999999999999994 11 114467788877766
Q ss_pred CceEEeccCCCCCCcceEEEEEe
Q 006662 596 WEGRIADHENGPRQREKILFANK 618 (636)
Q Consensus 596 W~~~~~~~e~~~~~~~~~l~~~K 618 (636)
.+..- .-+-| ...++||++|
T Consensus 185 L~l~~--~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEE--DIDMP-ANNLLLVFRK 204 (204)
T ss_pred CccCc--ccccC-CCCeEEEEeC
Confidence 65432 11233 2478999987
No 426
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.45 E-value=3.9 Score=42.83 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=60.2
Q ss_pred cCCCCCcEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEE
Q 006662 214 LKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRAFDMAH 287 (636)
Q Consensus 214 l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~----Lpf~~~sFDlV~ 287 (636)
...+. +||..|+| .|..+..+++. +..++.+ +.++...+.+++.+....+...+... .....+.+|+|+
T Consensus 163 ~~~~~--~vli~g~g~vG~~~~~la~~~G~~V~~~---~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGE--TVLVIGLGGLGLNAVQIAKAMGAAVIAV---DIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 34444 78888876 47777777775 7666656 55677777776666532221111000 012345799987
Q ss_pred ecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 288 ~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
..... ...+.++.+.|+++|.++..+.
T Consensus 238 d~~g~-------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 238 DFVGT-------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ECCCC-------HHHHHHHHHHhhcCCEEEEECC
Confidence 53211 3578889999999999998754
No 427
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=88.15 E-value=0.33 Score=50.84 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.7
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
...|||+|||+|.++.+|+++.- .|+.+|..+.+++.+.++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 56899999999999999998743 566677777888888775
No 428
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=87.94 E-value=5.7 Score=40.42 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=91.2
Q ss_pred cccCccccccCCcccccCcccCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhh--hcCCCeE
Q 006662 423 LTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAA--LVDDPLW 500 (636)
Q Consensus 423 ~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~--l~~~~v~ 500 (636)
+.+|-++.+-+- ..+..+.|.+++-.=..+...+.. . ..+++|+|+|-|-=|-= +...++-
T Consensus 31 L~~wN~~~NLt~---------------~~~~~e~~~rHilDSl~~~~~~~~-~-~~~~~DIGSGaGfPGipLAI~~p~~~ 93 (215)
T COG0357 31 LLKWNKAYNLTA---------------IRDPEELWQRHILDSLVLLPYLDG-K-AKRVLDIGSGAGFPGIPLAIAFPDLK 93 (215)
T ss_pred HHHhhHhcCCCC---------------CCCHHHHHHHHHHHHhhhhhcccc-c-CCEEEEeCCCCCCchhhHHHhccCCc
Confidence 567777776332 345578999887543333332222 1 58999999997733333 3333332
Q ss_pred EEEecCCCCC-ccchH-HHHhhcc--cchhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006662 501 VMNTVPVEAK-INTLG-VIYERGL--IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVI 576 (636)
Q Consensus 501 ~mnv~~~~~~-~~~l~-~~~eRgl--i~~~~~~ce~~~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i 576 (636)
.-++..... .+.|. ++.|=|| +.++|.--|.|..=++-||+|=| .+-+++..++-=.-.+|++||.++
T Consensus 94 -vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 94 -VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcch
Confidence 223332222 22332 3344555 34555444444432111999887 233566666666778999999874
Q ss_pred ---EEeCHHHHHHHHHHHhcCCCceEEeccC
Q 006662 577 ---IRDDVDILVKIKSITDGMEWEGRIADHE 604 (636)
Q Consensus 577 ---~~d~~~~~~~~~~~~~~~~W~~~~~~~e 604 (636)
+.--.+++..+++....+.+.+..+..-
T Consensus 166 ~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 166 AYKGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred hhhHHhhhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 3455668888888888888888755433
No 429
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=87.84 E-value=1.5 Score=44.70 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=85.4
Q ss_pred CcceEeeecccchhhhhhhcC----C-CeEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCCCCcccee--eecc
Q 006662 476 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLI--HADS 547 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~yp~t~Dl~--H~~~ 547 (636)
....||-.||..|....++.+ . .|+.+...|.... +.+.++-.|-- |.++.| .++|..|-++ ..|-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRPNIIPILED-----ARHPEKYRMLVEMVDV 146 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHSTTEEEEES------TTSGGGGTTTS--EEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCCceeeeecc-----CCChHHhhcccccccE
Confidence 477999999999999999864 3 4689999998776 78888888865 667765 3355444332 2444
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCCce-EEeccCCCCCCcceEEEE
Q 006662 548 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEG-RIADHENGPRQREKILFA 616 (636)
Q Consensus 548 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~~~~l~~ 616 (636)
+|..-..+-..+.+++-+..-||+||+++|.- ..++...-.+.++.-..+. ...+.| |+.++.++|.
T Consensus 147 I~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~dH~~vv 224 (229)
T PF01269_consen 147 IFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYERDHAMVV 224 (229)
T ss_dssp EEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTSTTEEEEE
T ss_pred EEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCCCcEEEE
Confidence 55544445556788899999999999999962 2233333333344433444 244455 5666666654
No 430
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=87.59 E-value=3.6 Score=46.90 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc----CCC--eEEEEe
Q 006662 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVM 271 (636)
Q Consensus 201 ~~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~~~ 271 (636)
..+.++.+.+++...+.. +|.|-.||+|.+.....+. ...-..+.+.+++......|+.+ +++ +.+...
T Consensus 171 P~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 171 PREVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred hHHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 345667777777554444 8999999999877665543 11013455557777777777643 333 345555
Q ss_pred ccccCCC-----CCCCeeEEEeccccc--ccccC---------------------h-HHHHHHHHhcccCCcEEEEEeC
Q 006662 272 ASIRLPY-----PSRAFDMAHCSRCLI--PWGQY---------------------D-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 272 d~~~Lpf-----~~~sFDlV~~s~~L~--h~~~d---------------------~-~~~L~el~RvLKPGG~Liis~p 321 (636)
+...-|. ..+.||.|+++.-+. .|... . ..++..+...|+|||+..+..|
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 5444442 336799999865441 22211 1 3688999999999998887766
No 431
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=87.49 E-value=5 Score=40.49 Aligned_cols=115 Identities=11% Similarity=-0.004 Sum_probs=67.1
Q ss_pred EEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CC--CeEEEEeccccCCCCCC-CeeEEEecccccc
Q 006662 222 AIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSR-AFDMAHCSRCLIP 294 (636)
Q Consensus 222 VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~--~~~~~~~d~~~Lpf~~~-sFDlV~~s~~L~h 294 (636)
|.||||--|.+..+|.+++.... +...|+++..++.|++. +. .+.+..+|... +++.+ ..|+|+...+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 68999999999999999976322 12228888888777643 32 36666666433 23333 3788887553311
Q ss_pred cccChHHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceEeecc
Q 006662 295 WGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (636)
Q Consensus 295 ~~~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk~v~~ 360 (636)
. -...|.+....++..-.|++.-. . ....+++.....+|..+.+
T Consensus 79 l---I~~ILe~~~~~~~~~~~lILqP~------------~-------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 L---IIEILEAGPEKLSSAKRLILQPN------------T-------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp H---HHHHHHHTGGGGTT--EEEEEES------------S--------HHHHHHHHHHTTEEEEEE
T ss_pred H---HHHHHHhhHHHhccCCeEEEeCC------------C-------ChHHHHHHHHHCCCEEEEe
Confidence 1 14566666677776677887722 1 1334677788889987764
No 432
>PRK10742 putative methyltransferase; Provisional
Probab=87.34 E-value=2.5 Score=43.88 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=52.2
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHH---HHHHHHcC-----------CCeEEEEec
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQ---VQFALERG-----------VPALIGVMA 272 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~---l~~A~erg-----------~~~~~~~~d 272 (636)
.|++.+.++.+...+|||.-+|.|..+..++.+|..++.+ +-++.. ++...++. ..+.+...+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~v---Er~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRML---ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4566666666655589999999999999999998877666 444433 33333331 123344444
Q ss_pred ccc-CCCCCCCeeEEEecccc
Q 006662 273 SIR-LPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 273 ~~~-Lpf~~~sFDlV~~s~~L 292 (636)
... |.-...+||+|+.--.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCC
Confidence 322 22123479999986655
No 433
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=87.32 E-value=4.5 Score=42.03 Aligned_cols=126 Identities=22% Similarity=0.265 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~e----rg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L 292 (636)
+.+|||||||.=-++..+... +...+++ |++..++++... -+++..+...|...-+ +....|+++..-++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~---DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAY---DIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEE---ESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEE---eCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 459999999999888877765 4555666 889888887643 3566777776655443 45679999987766
Q ss_pred cccccCh-HHHHHHHHhcccCCcEEEEEeCCCCccccccCCCCchhhhHHHHHHHHHHHHHhceE
Q 006662 293 IPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (636)
Q Consensus 293 ~h~~~d~-~~~L~el~RvLKPGG~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~la~~l~Wk 356 (636)
|..+.. ...-.++...++ .=.+++|.|....-.+.++ -.......++.++..-+|.
T Consensus 182 -p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~g------m~~~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 182 -PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKG------MEQTYSAWFEALAAERGWI 238 (251)
T ss_dssp -HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TT------HHHCHHHHHHHHCCTTCEE
T ss_pred -HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccc------cccCHHHHHHHhcccCCce
Confidence 544333 122222333332 2356667663333222221 1112234577777777775
No 434
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.69 E-value=0.91 Score=41.18 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.9
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCCEEEEc
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNILAVSF 246 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~vv~i 246 (636)
.....|||||+|-+..-|.+.|..+.++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 4479999999999999999999988888
No 435
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.55 E-value=0.51 Score=45.77 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=34.3
Q ss_pred CCCeeEEEecccccccc-------cCh---HHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWG-------QYD---GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~-------~d~---~~~L~el~RvLKPGG~Liis~p 321 (636)
.++||.+.|..+++|.. -++ ...+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 46799999988887763 122 4789999999999999999987
No 436
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=86.24 E-value=0.71 Score=47.91 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=32.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
...+|||+|||.|.+...|+++.. .|+.+|..+.+++.+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~ 70 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDD 70 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHH
Confidence 368999999999999999998743 455556665677777664
No 437
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=86.07 E-value=5.9 Score=41.19 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=56.5
Q ss_pred CcEEEEeCCCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHH-------HcCCCeEEEEeccccC-C--CCCCC-eeEE
Q 006662 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL-------ERGVPALIGVMASIRL-P--YPSRA-FDMA 286 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~-------erg~~~~~~~~d~~~L-p--f~~~s-FDlV 286 (636)
..+||++|.|+|-.+..++.. +..++-.+..+.-+.+-.... +.|..+....++-... + +-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 458999999999776666663 333333322122111111111 1122233332221111 1 11122 9999
Q ss_pred EecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 287 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+++.++.+ ....+.++.-+...|-.+|.+++..+
T Consensus 167 lasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99999843 34557888889999999997777654
No 438
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=86.06 E-value=8.6 Score=42.04 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=71.6
Q ss_pred ccCCCCCcEEEEeCCCCcHHHHHHhhcCC------EEEEcCcCCchHHHHH---HHHHcCCC--eEEEEeccccCC----
Q 006662 213 NLKDGSIRTAIDTGCGVASWGAYLMSRNI------LAVSFAPRDTHEAQVQ---FALERGVP--ALIGVMASIRLP---- 277 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCGtG~~a~~La~~~v------~vv~i~p~Dis~a~l~---~A~erg~~--~~~~~~d~~~Lp---- 277 (636)
.+.+++ +|||+.+-.|+=++.|.+... .++ ..|.+...+. ....+-.. ..+...+....|
T Consensus 152 ~v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vv---aND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 152 GVKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVV---ANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred ccCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeE---ecccCHHHHHHHHHHHhccCCcceeeecccceecccccc
Confidence 456666 999999999988888877522 222 2355544433 22233221 222222222222
Q ss_pred -----CCCCCeeEEEe-----ccccc--------c-cc--------cChHHHHHHHHhcccCCcEEEEEeCCCCcccccc
Q 006662 278 -----YPSRAFDMAHC-----SRCLI--------P-WG--------QYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWK 330 (636)
Q Consensus 278 -----f~~~sFDlV~~-----s~~L~--------h-~~--------~d~~~~L~el~RvLKPGG~Liis~p~~~w~~~~~ 330 (636)
.....||-|+| ....+ . |. .-.-.+|..-.++||+||.++.|+-..+
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn------ 300 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN------ 300 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC------
Confidence 23456999987 11000 0 11 0013578888999999999999975332
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhceEeec
Q 006662 331 GWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (636)
Q Consensus 331 ~W~~t~e~l~~~~~~ie~la~~l~Wk~v~ 359 (636)
+.++.--..+.++.....+.|-.+.
T Consensus 301 ----pieNEaVV~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 301 ----PIENEAVVQEALQKVGGAVELVDVS 325 (375)
T ss_pred ----chhhHHHHHHHHHHhcCcccceeec
Confidence 2223333445566666666554433
No 439
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=85.99 E-value=0.62 Score=48.98 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=57.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhcccccc-CCCC-CccceeeeccccccCCC
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM-STYP-RTYDLIHADSIFSLYKD 554 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~-~~yp-~t~Dl~H~~~~fs~~~~ 554 (636)
.-.++|+|||.| .++...|. .-+++-|....-++.+-.-|-- .--.|.+. .+|+ .+||..-...+-+....
T Consensus 46 gsv~~d~gCGng---ky~~~~p~--~~~ig~D~c~~l~~~ak~~~~~--~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNG---KYLGVNPL--CLIIGCDLCTGLLGGAKRSGGD--NVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCc---ccCcCCCc--ceeeecchhhhhccccccCCCc--eeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 668999999976 45555442 1223334332222222222211 01112222 2343 78997666666666677
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEE
Q 006662 555 RCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 555 ~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
++....+|-|+-|+|||||...|.
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE
Confidence 888999999999999999996664
No 440
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=85.42 E-value=7 Score=38.08 Aligned_cols=93 Identities=23% Similarity=0.272 Sum_probs=57.3
Q ss_pred eCCCCcHHHHHHhhc-----CCEEEEcCcCCchHHHH----------HHHHHcCCCeEEEEeccccCC----CCCCCeeE
Q 006662 225 TGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQV----------QFALERGVPALIGVMASIRLP----YPSRAFDM 285 (636)
Q Consensus 225 IGCGtG~~a~~La~~-----~v~vv~i~p~Dis~a~l----------~~A~erg~~~~~~~~d~~~Lp----f~~~sFDl 285 (636)
||=|.=+|+..|++. .+.++++ |..++.. +..++.|..+.+. .|+..+. ...+.||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~---ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSY---DSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeec---CchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCE
Confidence 566777888888876 3444555 3333222 2223445555443 3555554 35688999
Q ss_pred EEeccccccccc---C--------h-HHHHHHHHhcccCCcEEEEEeC
Q 006662 286 AHCSRCLIPWGQ---Y--------D-GLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 286 V~~s~~L~h~~~---d--------~-~~~L~el~RvLKPGG~Liis~p 321 (636)
|+-++-...... . . ..++..+.++|+++|.+.++..
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 998774422110 0 0 3578899999999999999864
No 441
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.32 E-value=5.1 Score=45.92 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=62.7
Q ss_pred CcEEEEeCCCC-cHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-----------C--C------
Q 006662 219 IRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----------L--P------ 277 (636)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-----------L--p------ 277 (636)
+.+||=+|||. |..+...++. |..++.+ |.+++.++.+++-|.. +...+..+ + .
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHHHH
Confidence 45999999996 5555556654 7666566 8898999998876643 22111111 0 0
Q ss_pred --CCC--CCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 278 --YPS--RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 278 --f~~--~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+.+ +.+|+|+..-.. +-...+..+.+++.+.+||||.++..+-
T Consensus 240 ~~~~~~~~gaDVVIetag~-pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALI-PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECCCC-CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 469999975533 3222344446999999999999998754
No 442
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=84.91 E-value=1.1 Score=46.44 Aligned_cols=112 Identities=13% Similarity=0.229 Sum_probs=66.1
Q ss_pred cCCCCCcceEeeecccchhhhhhhcC----C-CeEEEEecCCCCCccchHHH----Hhhcc---cchhh-ccc-cccCC-
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVI----YERGL---IGTYQ-NWC-EAMST- 535 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~----~eRgl---i~~~~-~~c-e~~~~- 535 (636)
|.+ ...|++.|.|.|++..+|+. . .|+..-+ ++.....+ .+-|+ +.+.| |.| +.|..
T Consensus 38 i~p---G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~-----~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 38 IRP---GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF-----REDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp --T---T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES-----SHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred CCC---CCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc-----CHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 555 78999999999999999974 2 2444333 32333333 33455 44555 888 56732
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcc-cCCcEEEE-EeCHHHHHHHHHHHhcCCCce
Q 006662 536 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRIL-RPEGSVII-RDDVDILVKIKSITDGMEWEG 598 (636)
Q Consensus 536 yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiL-rPgG~~i~-~d~~~~~~~~~~~~~~~~W~~ 598 (636)
....+|.|-. +-=+--..+--+-++| ||||.+.. +-..+++.+.-+.++...|.-
T Consensus 110 ~~~~~DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3467887665 2222236788888999 99999876 456666666666666666754
No 443
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=84.91 E-value=1.5 Score=44.24 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHHhhcccCCcEEEEEeCH
Q 006662 559 EDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 559 ~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
..+|.|.-=+||+||.++..-++
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeH
Confidence 37999999999999999875443
No 444
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=84.68 E-value=27 Score=36.28 Aligned_cols=133 Identities=18% Similarity=0.144 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCc-HHHHHHhhc--CCEEEEcCcCCchHHHHHH----HHHcCCCeEEEEeccc
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVA-SWGAYLMSR--NILAVSFAPRDTHEAQVQF----ALERGVPALIGVMASI 274 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG-~~a~~La~~--~v~vv~i~p~Dis~a~l~~----A~erg~~~~~~~~d~~ 274 (636)
+..+.+..=+.....-.+++||=+|=.-- +++..|... .+.++ |+.+..+++ |.+.+.++.....|.
T Consensus 28 eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~Vv-----DiDeRll~fI~~~a~~~gl~i~~~~~Dl- 101 (243)
T PF01861_consen 28 ETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVV-----DIDERLLDFINRVAEEEGLPIEAVHYDL- 101 (243)
T ss_dssp HHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE------S-HHHHHHHHHHHHHHT--EEEE---T-
T ss_pred HHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEE-----EcCHHHHHHHHHHHHHcCCceEEEEecc-
Confidence 33444443333333223569999997755 455555444 34444 666666654 456688887777775
Q ss_pred cCCCC---CCCeeEEEecccccccccCh-HHHHHHHHhcccCCc-EEEEEeCCCCccccccCCCCchhhhHHHHHHHHHH
Q 006662 275 RLPYP---SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGG-YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 349 (636)
Q Consensus 275 ~Lpf~---~~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG-~Liis~p~~~w~~~~~~W~~t~e~l~~~~~~ie~l 349 (636)
+.|+| .++||++++-- ++..+. ..++......||.-| ..+++-. . .+.-...|.++++.
T Consensus 102 R~~LP~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~-~------------~~~s~~~~~~~Q~~ 165 (243)
T PF01861_consen 102 RDPLPEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEALKGEGCAGYFGFT-H------------KEASPDKWLEVQRF 165 (243)
T ss_dssp TS---TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEEEE--T------------TT--HHHHHHHHHH
T ss_pred cccCCHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHHhCCCCceEEEEEe-c------------CcCcHHHHHHHHHH
Confidence 34444 47999999865 333333 678888899998766 4444321 0 01112345556776
Q ss_pred HHHhceE
Q 006662 350 ARSLCWK 356 (636)
Q Consensus 350 a~~l~Wk 356 (636)
+..+++-
T Consensus 166 l~~~gl~ 172 (243)
T PF01861_consen 166 LLEMGLV 172 (243)
T ss_dssp HHTS--E
T ss_pred HHHCCcC
Confidence 6677663
No 445
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=84.29 E-value=8.8 Score=41.83 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=60.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCC--CCccceeeeccccccCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY--PRTYDLIHADSIFSLYK 553 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~y--p~t~Dl~H~~~~fs~~~ 553 (636)
...+|||+||..|||.-.|.+++. .|+.+|.. .+-+.+.+-+-+-.+. -..|..- ++.+|++-||-+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~--~d~fr~~p~~~~vDwvVcDmv----- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLR--ADGFKFRPPRKNVDWLVCDMV----- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEe--ccCcccCCCCCCCCEEEEecc-----
Confidence 467999999999999999999975 56666754 4445555555443332 1223323 477999988332
Q ss_pred CCcCHHHHHHHHhhcccCC--cEEEEE
Q 006662 554 DRCEMEDVLLEMDRILRPE--GSVIIR 578 (636)
Q Consensus 554 ~~c~~~~~l~e~dRiLrPg--G~~i~~ 578 (636)
|.-..++-=|-++|.-| ..+|+.
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 33446777778888776 578886
No 446
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.20 E-value=6.3 Score=42.08 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=56.6
Q ss_pred cEEEEeCCC-CcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEe--ccccCCCCCCCeeEEEecccccc
Q 006662 220 RTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVM--ASIRLPYPSRAFDMAHCSRCLIP 294 (636)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~--d~~~Lpf~~~sFDlV~~s~~L~h 294 (636)
.+||=+||| .|.++..+++. +. .++.+ +.+++.++.+++.|....+... +..++....+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~---~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCA---DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE---eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 388888886 45666666665 55 34444 6677888888877754322111 11111111235898875321
Q ss_pred cccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 295 ~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
. ...+....+.||+||.+++.+.
T Consensus 245 ---~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467788899999999999864
No 447
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=84.02 E-value=5.1 Score=40.05 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.3
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR 239 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~ 239 (636)
.++. +|||+||..|+|+.-..++
T Consensus 68 ~p~~--~VlD~G~APGsWsQVavqr 90 (232)
T KOG4589|consen 68 RPED--TVLDCGAAPGSWSQVAVQR 90 (232)
T ss_pred CCCC--EEEEccCCCChHHHHHHHh
Confidence 3445 9999999999999888776
No 448
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=83.74 E-value=9.2 Score=40.29 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=71.5
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCcc---chHHHHhhcc-------cchhhccccccCC--------CC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKIN---TLGVIYERGL-------IGTYQNWCEAMST--------YP 537 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~---~l~~~~eRgl-------i~~~~~~ce~~~~--------yp 537 (636)
.--+||==|||+|-.|--++.++..+-. .+-+-- ...+|+.... ..-.|.||...+. +|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~g---nE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQG---NEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEE---EEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3457999999999999999999775421 122111 1244444321 2344555432222 22
Q ss_pred ---------Cccceeeeccccc-cCCCC------------------cCHHHHHHHHhhcccCCcEEEE--------EeC-
Q 006662 538 ---------RTYDLIHADSIFS-LYKDR------------------CEMEDVLLEMDRILRPEGSVII--------RDD- 580 (636)
Q Consensus 538 ---------~t~Dl~H~~~~fs-~~~~~------------------c~~~~~l~e~dRiLrPgG~~i~--------~d~- 580 (636)
..=+|-.+.|=|. .|... -++-++|-.+.++|||||++|= .+.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 0111222223332 22221 1355899999999999997663 233
Q ss_pred ------HH-HHHHHHHHHhcCCCceEE
Q 006662 581 ------VD-ILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 581 ------~~-~~~~~~~~~~~~~W~~~~ 600 (636)
++ .++.|+++++.+.|+...
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 33 679999999999999875
No 449
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=83.59 E-value=2.5 Score=46.76 Aligned_cols=104 Identities=14% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCCCCcEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHH----HcCCC-eEEEEeccccCC---CCCCC
Q 006662 215 KDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGVP-ALIGVMASIRLP---YPSRA 282 (636)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~----erg~~-~~~~~~d~~~Lp---f~~~s 282 (636)
.+..+.+|||+.+-.|.=+.++|.. |+ ++.. |.++..++... +-|+. ......|...+| ++. +
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~-I~An---D~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGV-IFAN---DSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCce-EEec---ccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-c
Confidence 3444559999999999655555543 43 2233 66666554433 33543 445555665554 444 8
Q ss_pred eeEEE----ecc--ccc-----ccc----------cChHHHHHHHHhcccCCcEEEEEeCCC
Q 006662 283 FDMAH----CSR--CLI-----PWG----------QYDGLYLIEVDRVLRPGGYWILSGPPV 323 (636)
Q Consensus 283 FDlV~----~s~--~L~-----h~~----------~d~~~~L~el~RvLKPGG~Liis~p~~ 323 (636)
||-|+ |+. ++. -+. .-+.++|......+++||+|+.++-.+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99998 444 220 000 011367888899999999999997533
No 450
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=83.49 E-value=7.6 Score=41.62 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=58.5
Q ss_pred cEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEeccccccc
Q 006662 220 RTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PYPSRAFDMAHCSRCLIPW 295 (636)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L--pf~~~sFDlV~~s~~L~h~ 295 (636)
.+||=+|+| .|.++..+++. +..++.++..+.++...+++++.|... ........ ....+.||+|+-.-.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g---- 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG---- 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC----
Confidence 388999987 46777777765 666666654455677788887766532 11111110 001245888875331
Q ss_pred ccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 296 ~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
....+.+..+.|++||.+++.+.
T Consensus 248 ---~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ---VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ---CHHHHHHHHHHccCCcEEEEEec
Confidence 12467889999999999988764
No 451
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.41 E-value=8 Score=39.96 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=71.6
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhhcccchhhccccccCCCC----Cccceeeecccccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP----RTYDLIHADSIFSL 551 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce~~~~yp----~t~Dl~H~~~~fs~ 551 (636)
..+++||+|+-+|||--.|.+++. --|..+|-..+||.-=+....==+.+.-+-.+.-.| .-.|++-|+--|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI- 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI- 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh-
Confidence 579999999999999999988754 112223333344333222222000000000111111 2356777654442
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCCceEE
Q 006662 552 YKDRCEMEDVLLEMDRILRPEGSVIIR-------------------DD---VDILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 552 ~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~~ 600 (636)
.+..+|-.+..+|.|+|-++.- |+ ..++.+|.+.++.+.|.+.-
T Consensus 156 -----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 156 -----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred -----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 3467999999999999998874 32 34888999999999999873
No 452
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=82.37 E-value=11 Score=40.14 Aligned_cols=92 Identities=21% Similarity=0.163 Sum_probs=57.4
Q ss_pred ccCCCCCcEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 213 NLKDGSIRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
...+++ +||=.|+| .|.++..+++. +..++.+ +.+++..+.+++.|....+. .... ..+.+|+++-..
T Consensus 162 ~~~~g~--~VlV~G~g~iG~~a~~~a~~~G~~vi~~---~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~ 231 (329)
T TIGR02822 162 SLPPGG--RLGLYGFGGSAHLTAQVALAQGATVHVM---TRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFA 231 (329)
T ss_pred CCCCCC--EEEEEcCCHHHHHHHHHHHHCCCeEEEE---eCChHHHHHHHHhCCceecc---cccc--CcccceEEEECC
Confidence 344555 89999975 45555666664 6655555 55667788888877543221 1111 124578765322
Q ss_pred cccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.. ...+....+.|++||.+++.+.
T Consensus 232 ~~-------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 232 PA-------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred Cc-------HHHHHHHHHhhCCCcEEEEEec
Confidence 11 2468888999999999998864
No 453
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=82.37 E-value=1.9 Score=45.73 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc---------CCCeEEEEeccccC--CCCCCCeeEE
Q 006662 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL--PYPSRAFDMA 286 (636)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er---------g~~~~~~~~d~~~L--pf~~~sFDlV 286 (636)
.++++|-||-|.|.+.+...++. .+-.+.-.++.+..++..++- +..+.+..+|...+ ....+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 35689999999999998888772 111222224455555544321 34466666664332 2447899999
Q ss_pred EecccccccccCh----HHHHHHHHhcccCCcEEEEEe
Q 006662 287 HCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 287 ~~s~~L~h~~~d~----~~~L~el~RvLKPGG~Liis~ 320 (636)
+.-..= +..+.- +.++..+.+.||+||+++..+
T Consensus 200 i~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 862211 111111 467888999999999999985
No 454
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=82.15 E-value=0.96 Score=46.65 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=31.4
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
....+|||+|||.|.+...|+++.- .|+.+|..+.+++.+.++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 4468999999999999999988742 244455555677666544
No 455
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=81.84 E-value=2.3 Score=47.04 Aligned_cols=146 Identities=19% Similarity=0.224 Sum_probs=86.5
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccch
Q 006662 450 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGT 525 (636)
Q Consensus 450 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~ 525 (636)
+-++|.+|-.+-..=+. +..... .+.|||+=|.+|||+-+.+.-+- -.|+.+|.+..-|+.+.+- |+-+.
T Consensus 195 ~g~kTGfFlDqR~~R~~-l~~~~~---GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 195 DGLKTGFFLDQRDNRRA-LGELAA---GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CcccceeeHHhHHHHHH-Hhhhcc---CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 44556666555332222 212222 67999999999999877766544 2334447775566665543 44444
Q ss_pred hhccc--cccCCC---CC---ccceeeecc-ccccCCCC-----cCHHHHHHHHhhcccCCcEEEEEe------CHHHHH
Q 006662 526 YQNWC--EAMSTY---PR---TYDLIHADS-IFSLYKDR-----CEMEDVLLEMDRILRPEGSVIIRD------DVDILV 585 (636)
Q Consensus 526 ~~~~c--e~~~~y---p~---t~Dl~H~~~-~fs~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~ 585 (636)
-|.|- ..|.-. -| +||+|-.|= -|+..+.. =+..+++...-+||+|||.+++.- ....+.
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~ 348 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLE 348 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHH
Confidence 45553 234332 23 999987642 24433222 134589999999999999999973 334566
Q ss_pred HHHHHHhcCCCceEEe
Q 006662 586 KIKSITDGMEWEGRIA 601 (636)
Q Consensus 586 ~~~~~~~~~~W~~~~~ 601 (636)
.|.+-+..+.=..++.
T Consensus 349 ~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 349 IIARAAAAAGRRAQEI 364 (393)
T ss_pred HHHHHHHhcCCcEEEe
Confidence 6666655554444443
No 456
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=80.74 E-value=6.8 Score=41.96 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=41.9
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhc--CCEEEEcCcCCchHHHHHHHHHc
Q 006662 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER 262 (636)
Q Consensus 204 ~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~v~vv~i~p~Dis~a~l~~A~er 262 (636)
+.+.+.+.+...++. .++|.-+|.|..+..++++ ...++++ |.++.+++.++++
T Consensus 8 ll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigi---D~D~~Al~~ak~~ 63 (305)
T TIGR00006 8 LLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGI---DRDPQAIAFAKER 63 (305)
T ss_pred hHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEE---cCCHHHHHHHHHH
Confidence 445566666555555 8999999999999999986 3566677 8899999998765
No 457
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=80.05 E-value=1.5 Score=44.88 Aligned_cols=98 Identities=14% Similarity=0.285 Sum_probs=67.9
Q ss_pred CCcceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh---cccchhhccccccCCCC-Cccceeeeccccc
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gli~~~~~~ce~~~~yp-~t~Dl~H~~~~fs 550 (636)
...-.++|+||+.|-.+..|...+| --++-.|.+-.|++-..+- +++-.|-.=-|-|..|- +++|||-.+ .|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS--ls 146 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS--LS 146 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhh--hh
Confidence 3467899999999999999999987 2233345555676665544 66555554457777785 999986540 11
Q ss_pred -cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 551 -LYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 551 -~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
.|. -+++--|...--+|+|.|.||-+
T Consensus 147 lHW~--NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWT--NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhh--ccCchHHHHHHHhcCCCccchhH
Confidence 111 34567788888899999999875
No 458
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=79.71 E-value=3.6 Score=37.07 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=57.3
Q ss_pred CCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC-----C-CCCCCeeEEEecccccccccChH
Q 006662 228 GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----P-YPSRAFDMAHCSRCLIPWGQYDG 300 (636)
Q Consensus 228 GtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L-----p-f~~~sFDlV~~s~~L~h~~~d~~ 300 (636)
|.|.++..+++. |..++.+ +.++...+.+++.|....+. .....+ . ...+.+|+|+-.-. -.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~---~~~~~k~~~~~~~Ga~~~~~-~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIAT---DRSEEKLELAKELGADHVID-YSDDDFVEQIRELTGGRGVDVVIDCVG-------SG 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEE---ESSHHHHHHHHHTTESEEEE-TTTSSHHHHHHHHTTTSSEEEEEESSS-------SH
T ss_pred ChHHHHHHHHHHcCCEEEEE---ECCHHHHHHHHhhccccccc-ccccccccccccccccccceEEEEecC-------cH
Confidence 467888888876 7766666 77888889998877333322 111100 1 23457999985321 14
Q ss_pred HHHHHHHhcccCCcEEEEEeCC
Q 006662 301 LYLIEVDRVLRPGGYWILSGPP 322 (636)
Q Consensus 301 ~~L~el~RvLKPGG~Liis~p~ 322 (636)
..+.....+|++||.+++.+-.
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHHhccCCEEEEEEcc
Confidence 7889999999999999999753
No 459
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=79.47 E-value=21 Score=37.24 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=60.8
Q ss_pred cEEEEeCCCCcHHHHHHhhc----CCEEEEcCcCCchHHHHHHHHH----cC--CCeEEEEecc----ccCCCCCCCeeE
Q 006662 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RG--VPALIGVMAS----IRLPYPSRAFDM 285 (636)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~vv~i~p~Dis~a~l~~A~e----rg--~~~~~~~~d~----~~Lpf~~~sFDl 285 (636)
-+.+|+|.|+..=++.|.+. +. ...+.|.|++...++...+ .. +++.-..++. ..+| ..++==+
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~ 157 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLF 157 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEE
Confidence 48999999999777666553 43 2345566888877654322 22 3333333332 1223 1222223
Q ss_pred EEecccccccccCh-HHHHHHHHhcccCCcEEEEEe
Q 006662 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 286 V~~s~~L~h~~~d~-~~~L~el~RvLKPGG~Liis~ 320 (636)
++....+-.+.+++ ..+|..+...|+||-+|++-.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 34445555666666 789999999999999999974
No 460
>PHA01634 hypothetical protein
Probab=78.51 E-value=12 Score=35.31 Aligned_cols=67 Identities=16% Similarity=0.049 Sum_probs=41.2
Q ss_pred CcEEEEeCCCCcHHHHHHhhcCC-EEEEcCcCCchHHHHHHHHHcCCCeEEE--EeccccCCCCCCCeeEEEe
Q 006662 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERGVPALIG--VMASIRLPYPSRAFDMAHC 288 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~--~~d~~~Lpf~~~sFDlV~~ 288 (636)
.++|+|||.+.|.-+.+++-+|. .++.+ +.++...+..++......+. .....+++-.-+.||+...
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~---E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQY---EKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEe---ccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 45899999999999999998875 45566 55677777665532111111 0112234333456887763
No 461
>PRK13699 putative methylase; Provisional
Probab=77.99 E-value=4.7 Score=41.18 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCceEEeccCCCCCCcceEEEEEec
Q 006662 558 MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 619 (636)
Q Consensus 558 ~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 619 (636)
++..+.|+.|||+|||.+++--.-..+..+..+.+...|...- .+||.|+
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~------------~IiW~K~ 100 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVG------------HLVFTKN 100 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEee------------EEEEECC
No 462
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=77.98 E-value=18 Score=39.49 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=69.1
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cc--cchhh----ccccccCC---CC--------
Q 006662 479 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ----NWCEAMST---YP-------- 537 (636)
Q Consensus 479 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~----~~ce~~~~---yp-------- 537 (636)
.|||++||+|.|+.+|.+.- -.|+.+|.+..++..+.+. |+ +.++. +|...+.. ++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 39999999999999988752 2466667666777776653 22 11111 11111000 10
Q ss_pred -CccceeeeccccccCCCCcCHH-HHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCceE---EeccCCCCCCcc
Q 006662 538 -RTYDLIHADSIFSLYKDRCEME-DVLLEMDRILRPEGSVIIRDDVD-ILVKIKSITDGMEWEGR---IADHENGPRQRE 611 (636)
Q Consensus 538 -~t~Dl~H~~~~fs~~~~~c~~~-~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~ 611 (636)
..||+|=.| ..|..+. .++- .|++|++.++++=+.. .-.-++.+.++ |++. .+|--..+..=|
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~---~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~~~DmFP~T~HvE 345 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCK---LVQAYERILYISCNPETLKANLEQLSET--HRVERFALFDQFPYTHHME 345 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHH---HHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEEEcccCCCCCcEE
Confidence 014554431 1233332 3333 3556999999985544 55667766655 7765 445444444445
Q ss_pred eEEEEE
Q 006662 612 KILFAN 617 (636)
Q Consensus 612 ~~l~~~ 617 (636)
-|....
T Consensus 346 ~v~lL~ 351 (353)
T TIGR02143 346 CGVLLE 351 (353)
T ss_pred EEEEEE
Confidence 555543
No 463
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=77.98 E-value=1.7 Score=46.06 Aligned_cols=44 Identities=20% Similarity=0.492 Sum_probs=35.6
Q ss_pred CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006662 537 PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 581 (636)
Q Consensus 537 p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 581 (636)
+..||+|-|-.||... +.-....++-.+.+.|+|||++++.-..
T Consensus 221 ~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 3789999999988654 3335679999999999999999886543
No 464
>KOG2730 consensus Methylase [General function prediction only]
Probab=77.15 E-value=6 Score=40.50 Aligned_cols=92 Identities=22% Similarity=0.349 Sum_probs=60.9
Q ss_pred EEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHHc----CCC--eEEEEeccccC----CCCCCCeeEEEecc
Q 006662 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMASIRL----PYPSRAFDMAHCSR 290 (636)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~er----g~~--~~~~~~d~~~L----pf~~~sFDlV~~s~ 290 (636)
.|+|.-||.|..+..++.++..++++ |+++..+..|+++ |++ +.|.++|...+ .+....+|+|+.+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisI---diDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAI---DIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEE---eccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 79999999999999999998888888 8888888888765 443 67788875443 33334466766554
Q ss_pred cccccc--cChHHHHHHHHhcccCCcEEEE
Q 006662 291 CLIPWG--QYDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 291 ~L~h~~--~d~~~~L~el~RvLKPGG~Lii 318 (636)
+|. .....-+..+...+.|.|.-++
T Consensus 174 ---pwggp~y~~~~~~DL~~~~~p~~~~~f 200 (263)
T KOG2730|consen 174 ---PWGGPSYLRADVYDLETHLKPMGTKIF 200 (263)
T ss_pred ---CCCCcchhhhhhhhhhhhcchhHHHHH
Confidence 343 1113344455555666554333
No 465
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=76.54 E-value=8.6 Score=40.77 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=71.4
Q ss_pred cCCCCCcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhhcccchhhcccc-c------------cCCC
Q 006662 471 LAQPGRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCE-A------------MSTY 536 (636)
Q Consensus 471 l~~~~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~ce-~------------~~~y 536 (636)
+.. +..|.||=+|.|-||.+..+.+.+ |=-+-+|.+|.. - +.+.|..++..|.++. . ...+
T Consensus 72 ~ah-~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~--V--i~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 72 LAH-PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA--V--IELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred hhC-CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH--H--HHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 455 445999999999999999998875 422333444443 3 4455666666653332 1 1225
Q ss_pred CCccceeeeccccccCCCCcC-HHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCC
Q 006662 537 PRTYDLIHADSIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEW 596 (636)
Q Consensus 537 p~t~Dl~H~~~~fs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W 596 (636)
+.+||+|=.+.-=-...+.-. =+..+-...|.|+|+|.++..-. .+.+..+.+..+++.+
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~ 212 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS 212 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc
Confidence 678998765221000000000 14677888999999999999711 1334455555555633
No 466
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=76.18 E-value=45 Score=36.72 Aligned_cols=111 Identities=20% Similarity=0.143 Sum_probs=62.6
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCc----HHHHHHhhc--C---CEEEEcCcCCc-hHHH--------HHHHHHcCCCeEE
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVA----SWGAYLMSR--N---ILAVSFAPRDT-HEAQ--------VQFALERGVPALI 268 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG----~~a~~La~~--~---v~vv~i~p~Di-s~a~--------l~~A~erg~~~~~ 268 (636)
.|.+.+... ..-.|+|+|.|.| .+...|+.+ + +.++++.+... +... .++|+.-|++..|
T Consensus 101 aIleA~~g~--~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 101 AILEAFEGE--RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHhccC--cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 355554322 3347999999999 455566665 2 33444433110 3332 3455666888777
Q ss_pred EEeccc--------cCCCCCCCeeEEEecccccccccC------hHHHHHHHHhcccCCcEEEEE
Q 006662 269 GVMASI--------RLPYPSRAFDMAHCSRCLIPWGQY------DGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 269 ~~~d~~--------~Lpf~~~sFDlV~~s~~L~h~~~d------~~~~L~el~RvLKPGG~Liis 319 (636)
...... .+...++..=+|.|...|++...+ +...+-...|-|+|.-..++.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 664222 222334556667777878777522 334566777789999554443
No 467
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=76.17 E-value=2.5 Score=46.66 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=52.8
Q ss_pred ceEeeecccchhhhhhhcC-CCeEEEEecCCCCCccchHHHHh----hcccc--hhh-ccccccCCCCCccceeeecccc
Q 006662 478 RNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYE----RGLIG--TYQ-NWCEAMSTYPRTYDLIHADSIF 549 (636)
Q Consensus 478 r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~e----Rgli~--~~~-~~ce~~~~yp~t~Dl~H~~~~f 549 (636)
.+|||+.||+|.|+..++. .++ -.|+..|..++.+..+.+ -|+-. +++ |.-+-+.. ...||+|..|- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP-~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDP-F 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECC-C
Confidence 4799999999999999854 342 223444554444444432 23311 222 22111111 45699999864 3
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 550 SLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 550 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
++. ..+|-..-+.++|||.+.++
T Consensus 135 -----Gs~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCc-HHHHHHHHHHhcCCCEEEEE
Confidence 222 33444436778999999997
No 468
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=75.40 E-value=17 Score=39.10 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=57.4
Q ss_pred cCCCCCcEEEEeCCC-CcHHHHHHhhc-CCE-EEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC-----C-CCCCCee
Q 006662 214 LKDGSIRTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----P-YPSRAFD 284 (636)
Q Consensus 214 l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~-vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L-----p-f~~~sFD 284 (636)
..+++ +||=.|+| .|..+..+++. +.. ++.+ +.++...+++++.+....+. ...... . .....+|
T Consensus 174 ~~~g~--~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~---~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 174 VKRGD--SVAVIGCGGVGDAAIAGAALAGASKIIAV---DIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEE---cCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCC
Confidence 34454 88888876 35666666665 653 5555 66777888887766532221 111110 0 1223589
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|+-.-. . ...+.+..+.||+||.+++.+.
T Consensus 248 ~vid~~g------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 248 VVIDAVG------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEEECCC------C-HHHHHHHHHHhccCCEEEEECC
Confidence 8874221 1 2457778899999999998864
No 469
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=75.29 E-value=27 Score=35.46 Aligned_cols=135 Identities=19% Similarity=0.320 Sum_probs=94.2
Q ss_pred CcceEeeecccchhhhhhhcC---CC-eEEEEecCCCCCccchHHHHhhcc-cchhhccccccCCCCCcccee--eeccc
Q 006662 476 RYRNLLDMNAYLGGFAAALVD---DP-LWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLI--HADSI 548 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~---~~-v~~mnv~~~~~~~~~l~~~~eRgl-i~~~~~~ce~~~~yp~t~Dl~--H~~~~ 548 (636)
....||=.||-.|.-..++.+ .+ +..+-+.|.-.. ..|.++-+|-- +.++-| -.+|.+|-.+ |.+.+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRPNIIPILED-----ARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCCCceeeecc-----cCCcHHhhhhcccccEE
Confidence 477899999999999998865 35 688999998886 88888888854 667765 4567666542 45666
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE----------eCHHHHH-HHHHHHhcCCCceE-EeccCCCCCCcceEEEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR----------DDVDILV-KIKSITDGMEWEGR-IADHENGPRQREKILFA 616 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~----------d~~~~~~-~~~~~~~~~~W~~~-~~~~e~~~~~~~~~l~~ 616 (636)
|..--.+-..+-+..-++.-|++||++++. |..++.. .++++-.+ ..++. ..+.| |..++-++|.
T Consensus 150 y~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~-~f~i~e~~~Le--Pye~DH~~i~ 226 (231)
T COG1889 150 YQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG-GFEILEVVDLE--PYEKDHALIV 226 (231)
T ss_pred EEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc-CceeeEEeccC--CcccceEEEE
Confidence 665555556677888899999999999885 4445554 44444332 23333 33444 6667778877
Q ss_pred Eec
Q 006662 617 NKK 619 (636)
Q Consensus 617 ~K~ 619 (636)
.|.
T Consensus 227 ~~~ 229 (231)
T COG1889 227 AKY 229 (231)
T ss_pred Eee
Confidence 663
No 470
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=75.26 E-value=2.6 Score=44.90 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=30.4
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
..+|||+|||.|.+..+|++... .|+.+|..+.+++.+.++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~ 77 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKR 77 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 56899999999999999987642 345556665677766553
No 471
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=74.94 E-value=26 Score=34.87 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=54.7
Q ss_pred cEEEEeCCCC-cHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCC-------CCCCCeeEEEecc
Q 006662 220 RTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-------YPSRAFDMAHCSR 290 (636)
Q Consensus 220 r~VLDIGCGt-G~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lp-------f~~~sFDlV~~s~ 290 (636)
.+||.+|+|. |..+..+++. +..++.+ +.++...+.+++.+....+ +..... ...+.+|+|+...
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~---~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVT---DRSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 3899999985 6666666664 6665555 4455666666555432111 111111 1245699998642
Q ss_pred cccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.- ...+..+.+.|+++|.++..+.
T Consensus 210 ~~-------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 210 GG-------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC-------HHHHHHHHHhcccCCEEEEEcc
Confidence 11 1456778899999999998764
No 472
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=74.65 E-value=37 Score=35.68 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=59.8
Q ss_pred hhccCCCCCcEEEEeCC--CCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC-----CCCCCC
Q 006662 211 LINLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRA 282 (636)
Q Consensus 211 lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L-----pf~~~s 282 (636)
.....+++ +||=.|. |.|..+..+++. |..++.+ ..+++..+++++.|....+...+.... ....+.
T Consensus 133 ~~~~~~g~--~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~---~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 133 ICGVKGGE--TVMVNAAAGAVGSVVGQIAKLKGCKVVGA---AGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HhCCCCCC--EEEEeCCccHHHHHHHHHHHHcCCEEEEE---eCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence 33445555 8888884 477888888876 7666655 456667777776665322221110000 012346
Q ss_pred eeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 283 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|+|+-.. . ...+.+..+.|++||.++..+.
T Consensus 208 vdvv~d~~-----G---~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 208 YDCYFDNV-----G---GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred eEEEEECC-----C---HHHHHHHHHHhCcCcEEEEecc
Confidence 99987522 1 2346888999999999998753
No 473
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=74.63 E-value=1 Score=39.70 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=33.5
Q ss_pred eeecccchhhhhhhcCC----C-eEEEEecCCCCCccchHHHHhhcccchhhccc----cccCCCC-Cccceeeeccccc
Q 006662 481 LDMNAYLGGFAAALVDD----P-LWVMNTVPVEAKINTLGVIYERGLIGTYQNWC----EAMSTYP-RTYDLIHADSIFS 550 (636)
Q Consensus 481 lD~~~g~ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~eRgli~~~~~~c----e~~~~yp-~t~Dl~H~~~~fs 550 (636)
|.+|+..|..+..|.+- + ..+..|-+-...+....++.+.++-..++-.+ +.+..++ +.||++|.+|-=+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 45787788777666542 2 12233333322113344444456644333222 2334455 8999999865211
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006662 551 LYKDRCEMEDVLLEMDRILRPEGSVIIRD 579 (636)
Q Consensus 551 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 579 (636)
......-|..+-+.|+|||.+++-|
T Consensus 81 ----~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 ----YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1233456667778899999998865
No 474
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=74.43 E-value=16 Score=39.50 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=57.8
Q ss_pred ccCCCCCcEEEEeCCC-CcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCee
Q 006662 213 NLKDGSIRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFD 284 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L-----pf~~~sFD 284 (636)
...+++ +||=+|+| .|.++..+++. +. .++.+ +.++...+.+++.|....+.. ....+ ....+.+|
T Consensus 188 ~i~~g~--~VlV~G~G~vG~~a~~lak~~G~~~Vi~~---~~~~~r~~~a~~~Ga~~~i~~-~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 188 GVRPGQ--SVAVVGLGGVGLSALLGAVAAGASQVVAV---DLNEDKLALARELGATATVNA-GDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEE---cCCHHHHHHHHHcCCceEeCC-CchhHHHHHHHHhCCCCC
Confidence 344454 78888876 45666666665 65 35555 667788888877665322211 11110 01123589
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|+-.-. ....+....+.|++||.+++.+.
T Consensus 262 ~vid~~G-------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 262 YAFEMAG-------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EEEECCC-------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 8875321 12467788899999999998753
No 475
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=74.16 E-value=2.1 Score=43.04 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=44.1
Q ss_pred cceEeeecccchhhhhhhcC--CC--eEEEEecCCCCCccchHHHHhh-cc---cchhhccccccCCCCCccceeeeccc
Q 006662 477 YRNLLDMNAYLGGFAAALVD--DP--LWVMNTVPVEAKINTLGVIYER-GL---IGTYQNWCEAMSTYPRTYDLIHADSI 548 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~--~~--v~~mnv~~~~~~~~~l~~~~eR-gl---i~~~~~~ce~~~~yp~t~Dl~H~~~~ 548 (636)
..+|+||-||+|.|+-.+++ +. |+..-+-|..- ..|....++ ++ |-.++.=|..|.. ...||-+.+
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~--~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim--- 175 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV--EYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIM--- 175 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH--HHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE---
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH--HHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEE---
Confidence 67999999999999988876 43 33333332211 233333322 22 2222211222322 477886555
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEE
Q 006662 549 FSLYKDRCEMEDVLLEMDRILRPEGSV 575 (636)
Q Consensus 549 fs~~~~~c~~~~~l~e~dRiLrPgG~~ 575 (636)
.+...+ ...|-+.-+++|+||.+
T Consensus 176 --~lp~~~--~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 176 --NLPESS--LEFLDAALSLLKEGGII 198 (200)
T ss_dssp ----TSSG--GGGHHHHHHHEEEEEEE
T ss_pred --CChHHH--HHHHHHHHHHhcCCcEE
Confidence 111111 25677788899999876
No 476
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=74.16 E-value=6.3 Score=40.66 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=44.4
Q ss_pred HHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHH---HHHHHHc---CC--------CeEEEEec
Q 006662 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQ---VQFALER---GV--------PALIGVMA 272 (636)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~---l~~A~er---g~--------~~~~~~~d 272 (636)
.|++.+.++++...+|||.-+|-|+-+..++..|..++.+ +-|+.. ++.+.++ .. .+.+...|
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~l---Erspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGL---ERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEE---E--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEE---ECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 4556666666655589999999999999988888777777 444332 2322222 11 24566666
Q ss_pred ccc-CCCCCCCeeEEEecccc
Q 006662 273 SIR-LPYPSRAFDMAHCSRCL 292 (636)
Q Consensus 273 ~~~-Lpf~~~sFDlV~~s~~L 292 (636)
... |..++++||+|+.--++
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S-
T ss_pred HHHHHhhcCCCCCEEEECCCC
Confidence 443 45567899999986666
No 477
>PRK11524 putative methyltransferase; Provisional
Probab=74.10 E-value=2.7 Score=44.27 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEEeccccC--CCCCCCeeEEEecccccc---------------cccChHHHHHHHHhcccCCcEEEE
Q 006662 267 LIGVMASIRL--PYPSRAFDMAHCSRCLIP---------------WGQYDGLYLIEVDRVLRPGGYWIL 318 (636)
Q Consensus 267 ~~~~~d~~~L--pf~~~sFDlV~~s~~L~h---------------~~~d~~~~L~el~RvLKPGG~Lii 318 (636)
.+..+|.... .+++++||+|++.--+.. +..-...++.++.|+|||||.+++
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
No 478
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=73.04 E-value=29 Score=36.34 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=54.2
Q ss_pred cEEEEeCCC-CcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 006662 220 RTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (636)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~~L~h~~~ 297 (636)
.+||-+|+| .|..+..+++. ++.++.+ +.+++..+.+.+.+....+.........-..+.+|+++....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~~v~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------ 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGFETVAI---TRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------ 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC------
Confidence 378888987 67666666665 6665555 445666666655553222211100000001245898875321
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeC
Q 006662 298 YDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 298 d~~~~L~el~RvLKPGG~Liis~p 321 (636)
....+.++.+.|+++|.++..+.
T Consensus 235 -~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -cHHHHHHHHHhcccCCEEEEECC
Confidence 13467888999999999998753
No 479
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.53 E-value=27 Score=36.58 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=56.5
Q ss_pred hccCCCCCcEEEEeCCC-CcHHHHHHhhc-CCE-EEEcCcCCchHHHHHHHHHcCCCeEEEEeccccC----CCCCCCee
Q 006662 212 INLKDGSIRTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRL----PYPSRAFD 284 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~-vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~L----pf~~~sFD 284 (636)
....++. +||-+|+| .|..+..+++. ++. ++.+ +.++...+.+.+.+.. .+...+.... ....+.+|
T Consensus 155 ~~~~~g~--~vlI~g~g~vg~~~~~la~~~G~~~v~~~---~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 155 LGIKPGD--SVLVFGAGPIGLLLAQLLKLNGASRVTVA---EPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCc
Confidence 3344444 88888865 35566666665 554 3444 4455666666666643 2221111110 11345699
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|+.... ....+.++.+.|+++|.++..+.
T Consensus 229 ~v~~~~~-------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 229 VVIEATG-------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EEEECCC-------ChHHHHHHHHHHhcCCEEEEEec
Confidence 9986321 13577888999999999988764
No 480
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=71.78 E-value=8.6 Score=43.88 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=64.3
Q ss_pred CcEEEEeCCCCcHHHHHHhhc---CCEEEEcCcCCchHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~vv~i~p~Dis~a~l~~A~er-----g~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
...|+-+|+|-|-+....++. --.-+.+...+-++.++.....+ ...+.+...|...++-|....|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 346888999999766554432 11122333335555554443333 235777878888887556889999873
Q ss_pred cccccccCh--HHHHHHHHhcccCCcEEEEE
Q 006662 291 CLIPWGQYD--GLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 291 ~L~h~~~d~--~~~L~el~RvLKPGG~Liis 319 (636)
.|-.+.++. ...|.-+.+.|||.|+.|=+
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 343455444 78999999999999887654
No 481
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.28 E-value=1.5 Score=42.38 Aligned_cols=44 Identities=30% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCC-CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006662 534 STY-PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 578 (636)
Q Consensus 534 ~~y-p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 578 (636)
+.| |++-|+|-|.||.....-+ .-..-+-|--|+|||||++-|.
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 455 7999999998887643322 2247889999999999999986
No 482
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=71.18 E-value=18 Score=39.31 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=59.5
Q ss_pred EEEEeCCCC-cHHHHHHhhc-C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc-----CCCC-CCCeeEEEeccc
Q 006662 221 TAIDTGCGV-ASWGAYLMSR-N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----LPYP-SRAFDMAHCSRC 291 (636)
Q Consensus 221 ~VLDIGCGt-G~~a~~La~~-~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~-----Lpf~-~~sFDlV~~s~~ 291 (636)
+|+=+|||. |.++..+++. + ..++-+ |.++..+++|++.+....+....... +... ...||+|+=.-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~---d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV---DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe---CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 899999994 7777777765 3 334444 88999999998844222111111100 0112 236999984332
Q ss_pred ccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 292 L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
....+..+.+++||||.+++.+-
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEec
Confidence 13588999999999999999864
No 483
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=71.15 E-value=31 Score=35.62 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=81.4
Q ss_pred CCcceEeeecccchhhhhhhcCCC-eEEEEecCCCCCccchHHHHhhcccchhh-------------ccccccCCCCC-c
Q 006662 475 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPR-T 539 (636)
Q Consensus 475 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eRgli~~~~-------------~~ce~~~~yp~-t 539 (636)
.+.++||=+|.|-|+.+..|.+.+ +--+-+|..|.. .+.++.+ .++..+ |=-+-+...++ +
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~--Vv~~a~~--~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE--VVELARK--YFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH--HHHHHHH--HTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChH--HHHHHHH--hchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 468999999999999999999876 534445665553 5555433 223221 11112344676 9
Q ss_pred cceeeeccccccCC-CCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCceEEeccCCC--CCCcc
Q 006662 540 YDLIHADSIFSLYK-DRCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHENG--PRQRE 611 (636)
Q Consensus 540 ~Dl~H~~~~fs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e~~--~~~~~ 611 (636)
||+|=.+..-.... ..---...+-.+.|.|+|+|.+++.- ..+.+..+.+.++...-.+..+-.--- +..--
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~ 230 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWW 230 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccce
Confidence 99876532211100 01112578899999999999999862 345666777777766666654321111 11123
Q ss_pred eEEEEEecC
Q 006662 612 KILFANKKY 620 (636)
Q Consensus 612 ~~l~~~K~~ 620 (636)
-++++.|..
T Consensus 231 ~~~~~s~~~ 239 (246)
T PF01564_consen 231 SFASASKDI 239 (246)
T ss_dssp EEEEEESST
T ss_pred eEEEEeCCC
Confidence 466666654
No 484
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=70.39 E-value=8.5 Score=37.82 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhccCCCCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHHH
Q 006662 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261 (636)
Q Consensus 202 ~~~id~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~e 261 (636)
.++++.+.++.. .+++ .|||.=||+|+.+....+.+-..+++ |+++...+.|.+
T Consensus 178 ~~l~~~lI~~~t-~~gd--iVlDpF~GSGTT~~aa~~l~R~~ig~---E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST-NPGD--IVLDPFAGSGTTAVAAEELGRRYIGI---EIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS--TT---EEEETT-TTTHHHHHHHHTT-EEEEE---ESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh-ccce--eeehhhhccChHHHHHHHcCCeEEEE---eCCHHHHHHhcC
Confidence 344555555442 3444 89999999999988888888777777 888888888753
No 485
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=70.10 E-value=30 Score=39.71 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=76.4
Q ss_pred CcceEeeecccchhhhhhhcCCC-------eEEEEecCCCCCccchHHHHhh----cc--cchhh-c-cccccC---CCC
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDP-------LWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-N-WCEAMS---TYP 537 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~-------v~~mnv~~~~~~~~~l~~~~eR----gl--i~~~~-~-~ce~~~---~yp 537 (636)
...+|+|-+||.|+|.+++.++- -.-.++...|-.+..+..+..+ +. +-+.+ | .|..+. .+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 35689999999999998886531 1345666766665555544332 21 11111 1 122221 233
Q ss_pred CccceeeeccccccCC--------------------------------CCcC-----------HHHHHHH-HhhcccCCc
Q 006662 538 RTYDLIHADSIFSLYK--------------------------------DRCE-----------MEDVLLE-MDRILRPEG 573 (636)
Q Consensus 538 ~t~Dl~H~~~~fs~~~--------------------------------~~c~-----------~~~~l~e-~dRiLrPgG 573 (636)
..||+|=++==|...+ ..|. .-.+++| .-++|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 5799876654443221 1111 1124567 589999999
Q ss_pred EEEEEeCHH-----HHHHHHH-HHhcCCCceEEeccC------CCCCCcceEEEEEec
Q 006662 574 SVIIRDDVD-----ILVKIKS-ITDGMEWEGRIADHE------NGPRQREKILFANKK 619 (636)
Q Consensus 574 ~~i~~d~~~-----~~~~~~~-~~~~~~W~~~~~~~e------~~~~~~~~~l~~~K~ 619 (636)
++.+=-+.. .-..+++ +++....... ++-+ ++...+-.|++.+|.
T Consensus 191 ~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I-~~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 191 YVSIISPASWLGDKTGENLREYIFNNRLINCI-QYFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred EEEEEEChHHhcCccHHHHHHHHHhCCeeEEE-EECCccccCcCCCCcceEEEEEECC
Confidence 987632222 2345655 4555555433 2322 123345567777764
No 486
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=69.95 E-value=13 Score=38.32 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=56.2
Q ss_pred ceecCCCC--CCCcccHHHHHHHHHHhhccCC----CCCcEEEEeCCCCcHHHHHHhhcCCEEEEcCcCCchHHHHHHHH
Q 006662 187 RFSFPGGG--TMFPRGADAYIDDIGKLINLKD----GSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL 260 (636)
Q Consensus 187 ~~~F~ggg--~~f~~g~~~~id~L~~lL~l~~----g~~r~VLDIGCGtG~~a~~La~~~v~vv~i~p~Dis~a~l~~A~ 260 (636)
++.+|.+. .+.|.. ..|+..++++|.... ++..++||||.|.--+-..+--+ -.+.++.+.|++...++.|+
T Consensus 42 ~wdiPeg~LCPpvPgR-AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~ 119 (292)
T COG3129 42 YWDIPEGFLCPPVPGR-ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAK 119 (292)
T ss_pred EecCCCCCcCCCCCCh-hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHH
Confidence 35566543 234444 458888998886433 34568999988865433222222 11234445577776666664
Q ss_pred Hc-----CCC--eEEEEeccccCCC-----CCCCeeEEEeccccc
Q 006662 261 ER-----GVP--ALIGVMASIRLPY-----PSRAFDMAHCSRCLI 293 (636)
Q Consensus 261 er-----g~~--~~~~~~d~~~Lpf-----~~~sFDlV~~s~~L~ 293 (636)
.. +.. +.+.......--| ..+.||++.|+.-+|
T Consensus 120 ~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 120 AIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred HHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 22 111 2222211111112 257899999999763
No 487
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=69.91 E-value=12 Score=42.82 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=59.9
Q ss_pred CcEEEEeCCCC-cHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEEEecccc---------------------
Q 006662 219 IRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR--------------------- 275 (636)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~--------------------- 275 (636)
+.+||=+|+|. |..+..+++. |..++.+ |.+.+.++.+++-+. .+...+..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa--~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGA--EFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCC--eEEeccccccccccccceeecCHHHHHHHH
Confidence 35899999995 4555555554 6665556 667777777766543 222222110
Q ss_pred --CCCCCCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEE
Q 006662 276 --LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (636)
Q Consensus 276 --Lpf~~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis 319 (636)
++-.-..+|+|++.- +.+-.+.|.-..+++.+.+|||+.++-.
T Consensus 239 ~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 111124699998754 3355555566888999999999987744
No 488
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=69.85 E-value=27 Score=36.11 Aligned_cols=91 Identities=22% Similarity=0.171 Sum_probs=54.4
Q ss_pred cEEEEeCCC-CcHHHHHHhhc-CCE-EEEcCcCCchHHHHHHHHHcCCCeEEEEecc-ccC-C-CCCCCeeEEEeccccc
Q 006662 220 RTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRL-P-YPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v~-vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~-~~L-p-f~~~sFDlV~~s~~L~ 293 (636)
.+||=+|+| .|..+..+++. +.. ++.+ +.++...+.+++.+....+...+. ..+ . .....+|+|+-.-.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~---~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G-- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAA---DPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG-- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC--
Confidence 388888876 45566666654 554 4444 566777788877665322211110 000 0 12245898875321
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEe
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSG 320 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~ 320 (636)
....+.++.+.|+|+|.+++.+
T Consensus 197 -----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 197 -----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -----ChHHHHHHHHHhcCCCEEEEec
Confidence 1356788899999999999876
No 489
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=69.82 E-value=26 Score=37.00 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=56.7
Q ss_pred hccCCCCCcEEEEeCCC-CcHHHHHHhhc-CCE-EEEcCcCCchHHHHHHHHHcCCCeEEEEecc--ccC-C-CCCCCee
Q 006662 212 INLKDGSIRTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMAS--IRL-P-YPSRAFD 284 (636)
Q Consensus 212 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v~-vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~--~~L-p-f~~~sFD 284 (636)
+...+++ +||=+|+| .|.++..+++. +.. ++.+ +.+++..+.+++.+....+...+. ..+ . .....+|
T Consensus 159 ~~~~~g~--~vlV~G~G~vG~~~~~~ak~~G~~~vi~~---~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 159 VGVSGRD--TVLVVGAGPVGLGALMLARALGAEDVIGV---DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 3344454 78888875 34555556654 555 5445 566777778777664322211110 001 0 1234699
Q ss_pred EEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 285 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
+|+-... ....+....+.|+++|.+++.+.
T Consensus 234 ~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 234 VAIECSG-------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EEEECCC-------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 9885321 12456777899999999998764
No 490
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.44 E-value=4.7 Score=39.38 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=73.3
Q ss_pred CcceEeeecccchhhhhhhcCCCeEEEEecCCCCC---ccchHHHHhhcccchh-------hccccccCCC-CCccceee
Q 006662 476 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAK---INTLGVIYERGLIGTY-------QNWCEAMSTY-PRTYDLIH 544 (636)
Q Consensus 476 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~---~~~l~~~~eRgli~~~-------~~~ce~~~~y-p~t~Dl~H 544 (636)
+.|.||..|+|+-|.|.-|+...+-+-.|--+|+. ...++-|.-+...--+ .+|=.+.+-- -.|||+|-
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 45889999999999999997653333334344553 2344455555421111 1222233333 36999999
Q ss_pred eccccccCCCCcCH-----HHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCCceEE
Q 006662 545 ADSIFSLYKDRCEM-----EDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDGMEWEGRI 600 (636)
Q Consensus 545 ~~~~fs~~~~~c~~-----~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~~~W~~~~ 600 (636)
| +.|.. ++++--+-+.|||.|..++..+. +.+++..+.++..-..+.+
T Consensus 109 a--------ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 A--------ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred e--------ccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 8 67764 37888999999999999886432 4666666665555444443
No 491
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=68.97 E-value=47 Score=35.69 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=58.6
Q ss_pred ccCCCCCcEEEEeCC--CCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHH-HcCCCeEEEEeccccC-----CCCCCCe
Q 006662 213 NLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL-ERGVPALIGVMASIRL-----PYPSRAF 283 (636)
Q Consensus 213 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~-erg~~~~~~~~d~~~L-----pf~~~sF 283 (636)
...+++ +||=.|+ |.|.++..+++. |..++.+ +.++...+.++ +.|....+...+...+ ....+.+
T Consensus 155 ~~~~g~--~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~---~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 155 SPKKGD--SVFVSAASGAVGQLVGQLAKLHGCYVVGS---AGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 344555 8999987 378888888876 7766655 55666666665 4554322211100010 0112468
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
|+|+-.-. ...+....+.|++||.+++.+.
T Consensus 230 D~v~d~vG--------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 230 DIYFDNVG--------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EEEEECCC--------HHHHHHHHHHhccCCEEEEECc
Confidence 98875321 2467888999999999998764
No 492
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=68.77 E-value=30 Score=36.45 Aligned_cols=91 Identities=22% Similarity=0.231 Sum_probs=54.1
Q ss_pred cEEEEeCCCC-cHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEec---cccCCCCCCCeeEEEeccccc
Q 006662 220 RTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMA---SIRLPYPSRAFDMAHCSRCLI 293 (636)
Q Consensus 220 r~VLDIGCGt-G~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d---~~~Lpf~~~sFDlV~~s~~L~ 293 (636)
.+||-.|||. |..+..+++. ++ .++.+ +.++...+.+.+.+....+ ... ...+....+.+|+|+.....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~~v~~~---~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g~- 241 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAAEIVAT---DLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASGA- 241 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCCC-
Confidence 4888888874 6666666665 66 44445 4556666666555542211 111 11121122358998864321
Q ss_pred ccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 294 h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+.++.+.|+++|.++..+.
T Consensus 242 ------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 242 ------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ------HHHHHHHHHHHhcCCEEEEEec
Confidence 3467889999999999997753
No 493
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=68.76 E-value=6.7 Score=42.85 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=44.2
Q ss_pred hccCCceecCCCCCCCcccHHHHHHHHHHhhccC-CCCCcEEEEeCCCCcHHHHHHhhcC-------CEEEEcCcCCchH
Q 006662 182 RFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRN-------ILAVSFAPRDTHE 253 (636)
Q Consensus 182 ~~~g~~~~F~ggg~~f~~g~~~~id~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~-------v~vv~i~p~Dis~ 253 (636)
...||.+.-|.-+.+|.+-.- ..+.+++... ......++|+|.|.|.++..+++.- .....+.-++.|+
T Consensus 43 G~~GDFiTApels~lFGella---~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 43 GRKGDFITAPELSQLFGELLA---EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred cccCCeeechhHHHHHHHHHH---HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 345666665555555633332 3344444322 2234579999999999998887641 1233333347777
Q ss_pred HHHHHHHHc
Q 006662 254 AQVQFALER 262 (636)
Q Consensus 254 a~l~~A~er 262 (636)
...+.-+++
T Consensus 120 ~L~~~Qk~~ 128 (370)
T COG1565 120 ELRARQKET 128 (370)
T ss_pred HHHHHHHHH
Confidence 766554443
No 494
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=68.61 E-value=4.4 Score=42.77 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=26.9
Q ss_pred CeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 282 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.||+|.++..+.........+......++++.|.+++.+-
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence 6888888877733332222336677788899999888753
No 495
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=68.36 E-value=4.1 Score=38.13 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=36.6
Q ss_pred HHHHHHhhhcc----CCCCCcceEeeecccchhhhhhhcC-----CCeEEEEecCCCCCccchHHHHhh
Q 006662 461 VTYYKSVDYQL----AQPGRYRNLLDMNAYLGGFAAALVD-----DPLWVMNTVPVEAKINTLGVIYER 520 (636)
Q Consensus 461 v~~y~~~~~~l----~~~~~~r~vlD~~~g~ggfaa~l~~-----~~v~~mnv~~~~~~~~~l~~~~eR 520 (636)
|+++..++..+ ....+...|.|+|||-|=.+.+|.. . ...+|+.+|..+..+..+.+|
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 55555554432 1226799999999999999988877 3 234555556554444444444
No 496
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=67.50 E-value=1.6 Score=39.80 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=33.3
Q ss_pred cceeeeccccc---cCCCCcCHHHHHHHHhhcccCCcEEEEEeC--------HHHHHHHHHHHhcCCCceE
Q 006662 540 YDLIHADSIFS---LYKDRCEMEDVLLEMDRILRPEGSVIIRDD--------VDILVKIKSITDGMEWEGR 599 (636)
Q Consensus 540 ~Dl~H~~~~fs---~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--------~~~~~~~~~~~~~~~W~~~ 599 (636)
||+|-|-+|-- +-.....+..+|..|-+.|||||.+|+--+ ......+.+-.+++.+.-.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~ 72 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPD 72 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GG
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChH
Confidence 78777622211 111234567889999999999999999522 2234455555666665443
No 497
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=67.21 E-value=27 Score=37.62 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHhhccCCCCCcEEEEeC--CCCcHHHHHHhhc-CCEEEEcCcCCchHHHHHHHHHcCCCeEEE--Eecc-ccC--CCC
Q 006662 208 IGKLINLKDGSIRTAIDTG--CGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIG--VMAS-IRL--PYP 279 (636)
Q Consensus 208 L~~lL~l~~g~~r~VLDIG--CGtG~~a~~La~~-~v~vv~i~p~Dis~a~l~~A~erg~~~~~~--~~d~-~~L--pf~ 279 (636)
+.+...+++++ +||=.| .|.|.++..|++. +..++.. -.+.+..+.+++.|....+. ..+. +.. ...
T Consensus 134 l~~~~~l~~g~--~VLV~gaaGgVG~~aiQlAk~~G~~~v~~---~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 134 LFDRAGLKPGE--TVLVHGAAGGVGSAAIQLAKALGATVVAV---VSSSEKLELLKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred HHHhcCCCCCC--EEEEecCCchHHHHHHHHHHHcCCcEEEE---ecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 33344455655 899988 4577999999987 5444444 22344445676666533322 1110 011 122
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 280 ~~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
...+|+|+..-. ...+.+..+.|+++|.++..+.
T Consensus 209 g~gvDvv~D~vG--------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLDTVG--------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCceEEEECCC--------HHHHHHHHHHhccCCEEEEEec
Confidence 346999986321 4677789999999999999865
No 498
>PLN02740 Alcohol dehydrogenase-like
Probab=66.87 E-value=35 Score=37.12 Aligned_cols=97 Identities=20% Similarity=0.130 Sum_probs=57.3
Q ss_pred ccCCCCCcEEEEeCCC-CcHHHHHHhhc-CC-EEEEcCcCCchHHHHHHHHHcCCCeEEEEeccc-cC-----CCCCCCe
Q 006662 213 NLKDGSIRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASI-RL-----PYPSRAF 283 (636)
Q Consensus 213 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-~v-~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~-~L-----pf~~~sF 283 (636)
...+++ +||=+|+| .|..+..+++. +. .++.+ +.+++..+.+++.|....+...+.. .+ ....+.+
T Consensus 195 ~~~~g~--~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~---~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 195 NVQAGS--SVAIFGLGAVGLAVAEGARARGASKIIGV---DINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHCCCCcEEEE---cCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 344555 88989876 35555666654 65 35555 6677788888776653322111100 00 0112268
Q ss_pred eEEEecccccccccChHHHHHHHHhcccCC-cEEEEEeC
Q 006662 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (636)
Q Consensus 284 DlV~~s~~L~h~~~d~~~~L~el~RvLKPG-G~Liis~p 321 (636)
|+|+-.-. ....+.+..+.+++| |.+++.+.
T Consensus 270 dvvid~~G-------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 270 DYSFECAG-------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CEEEECCC-------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 98875321 124677778889997 99888764
No 499
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=66.62 E-value=8.2 Score=41.00 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=66.3
Q ss_pred cceEeeecccchhhhhhhcCCCeEEEEecCCCCCccchHHHHhh----cccchhhc-ccc-ccCCC-----CCccceeee
Q 006662 477 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQN-WCE-AMSTY-----PRTYDLIHA 545 (636)
Q Consensus 477 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gli~~~~~-~ce-~~~~y-----p~t~Dl~H~ 545 (636)
.++|||+=|.+|||+.+.+.-+- ..|+.+|.+...|..+.+- |+-..-|. +++ .|... .+.||+|=+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46999999999999987766654 2344456665566655543 33111121 121 22111 257998765
Q ss_pred c------cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCCCceEEe
Q 006662 546 D------SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------VDILVKIKSITDGMEWEGRIA 601 (636)
Q Consensus 546 ~------~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~~~W~~~~~ 601 (636)
+ +-|+.. =+...++.-.-++|+|||.+++.-. ...++.+.+.+..++---+..
T Consensus 202 DPPsF~k~~~~~~---~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~~ 266 (286)
T PF10672_consen 202 DPPSFAKSKFDLE---RDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERLG 266 (286)
T ss_dssp --SSEESSTCEHH---HHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEEE
T ss_pred CCCCCCCCHHHHH---HHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeeec
Confidence 3 222221 1345788888999999999988632 234455666565444433333
No 500
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.16 E-value=26 Score=37.48 Aligned_cols=92 Identities=20% Similarity=0.125 Sum_probs=53.3
Q ss_pred CCCCCcEEEEeCCC-CcHHHHHHhhc--C-CEEEEcCcCCchHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 006662 215 KDGSIRTAIDTGCG-VASWGAYLMSR--N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (636)
Q Consensus 215 ~~g~~r~VLDIGCG-tG~~a~~La~~--~-v~vv~i~p~Dis~a~l~~A~erg~~~~~~~~d~~~Lpf~~~sFDlV~~s~ 290 (636)
.+++ +||=+||| .|.++..++++ + ..++.+ +.++..++.+++-+. ... .+ .+. ....+|+|+-.-
T Consensus 162 ~~g~--~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~---~~~~~k~~~a~~~~~--~~~-~~--~~~-~~~g~d~viD~~ 230 (341)
T cd08237 162 KDRN--VIGVWGDGNLGYITALLLKQIYPESKLVVF---GKHQEKLDLFSFADE--TYL-ID--DIP-EDLAVDHAFECV 230 (341)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHhcCCCcEEEE---eCcHhHHHHHhhcCc--eee-hh--hhh-hccCCcEEEECC
Confidence 3444 89999987 45566666653 2 344444 556666777654221 111 11 111 112489888532
Q ss_pred cccccccChHHHHHHHHhcccCCcEEEEEeC
Q 006662 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (636)
Q Consensus 291 ~L~h~~~d~~~~L~el~RvLKPGG~Liis~p 321 (636)
.- ......+.+..++|++||.+++.+.
T Consensus 231 G~----~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 GG----RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CC----CccHHHHHHHHHhCcCCcEEEEEee
Confidence 11 0123578889999999999998863
Done!