BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006663
         (636 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
           Prestin (Anion Transporter Slc26a5)
          Length = 143

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 7/140 (5%)

Query: 477 PATCKLGKISDSNLYLDTEQYQHAQGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQV 536
           P+   LG++ D+++Y+D + Y+  +  PGI I Q+ +PIY+AN +     + R       
Sbjct: 2   PSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKT----- 56

Query: 537 LSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILS 596
              +  + I  V+LD + V+ +D  G+     I++      I + L      V++ +  +
Sbjct: 57  -GVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSN 115

Query: 597 KFIDVIG-KDSVFLSIEDAI 615
           +F +    K+ +F SI DA+
Sbjct: 116 RFFENPALKELLFHSIHDAV 135


>pdb|2KLN|A Chain A, Solution Structure Of Stas Domain Of Rv1739c From M.
           Tuberculosis
          Length = 130

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 493 DTEQYQHAQGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDL 552
           D + Y  A+  PG+++ +  +P+ FAN    R R L        + +  P  +E  +L+ 
Sbjct: 3   DIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRAL-------TVVDQDPGQVEWFVLNA 55

Query: 553 SGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIE 612
                +D+T + A  ++   L  + I   +   +  + + +  +  +D IG+D +F+++ 
Sbjct: 56  ESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLP 115

Query: 613 DAIDA 617
            A+ A
Sbjct: 116 TAVQA 120


>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
          Length = 296

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 33  FKQFRNEKHRAIKALQYFIPFFE--WIPNYNLKLLRYDVLAGITITSLAIPQGISYAKLA 90
           FK    +KHRA++ +   +  F   W+P YNL LL  D L    +   +  +  +  +  
Sbjct: 202 FKAHMGQKHRAMRVIFAVVLIFLLCWLP-YNLVLLA-DTLMRTQVIQESCERRNNIGRAL 259

Query: 91  SIPPIIGLYSSFVPPLVYAVFGSS 114
               I+G   S + P++YA  G +
Sbjct: 260 DATEILGFLHSCLNPIIYAFIGQN 283


>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
           A-Ketoglutarate
 pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
          Length = 373

 Score = 30.8 bits (68), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 11  GPKSFSTKLKSKCKETLFPDDPFKQFRNEKHRAIKALQYFIPFFEWIPNYNLKLLRYDV- 69
           G  S STKLK K  E+ F  D F+QFR E    +   Q      +++  Y  K L +   
Sbjct: 123 GSVSKSTKLKLKNFESSFNIDDFEQFRTEYTIDLSDFQN-TERLKFLEEYYWKTLNFTTP 181

Query: 70  LAGITITSLAIPQGISYAKLASIPPIIGLYSSFVP 104
           + G        P+G++   +A +P I+    + VP
Sbjct: 182 MYGADTPGSIFPEGLNVWNVAKLPNILDHMETKVP 216


>pdb|2JAF|A Chain A, Ground State Of Halorhodopsin T203v
 pdb|2JAG|A Chain A, L1-Intermediate Of Halorhodopsin T203v
          Length = 274

 Score = 29.6 bits (65), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 231 AVIGISFLIFLQFTRYLKNRKPKLFW-VSAMAPMVTV 266
           A+ GI+ L+F+   R ++  +P+L W  + M P+V++
Sbjct: 38  ALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSI 74


>pdb|1E12|A Chain A, Halorhodopsin, A Light-Driven Chloride Pump
          Length = 253

 Score = 29.3 bits (64), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 231 AVIGISFLIFLQFTRYLKNRKPKLFW-VSAMAPMVTV 266
           A+ GI+ L+F+   R ++  +P+L W  + M P+V++
Sbjct: 17  ALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSI 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,669,195
Number of Sequences: 62578
Number of extensions: 638828
Number of successful extensions: 1379
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 7
length of query: 636
length of database: 14,973,337
effective HSP length: 105
effective length of query: 531
effective length of database: 8,402,647
effective search space: 4461805557
effective search space used: 4461805557
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)