Query 006663
Match_columns 636
No_of_seqs 334 out of 2241
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 12:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 3E-100 7E-105 857.1 46.4 622 4-630 14-655 (665)
2 TIGR00815 sulP high affinity s 100.0 7.6E-98 2E-102 835.8 59.7 560 52-614 1-563 (563)
3 COG0659 SUL1 Sulfate permease 100.0 6.1E-91 1.3E-95 766.2 56.1 547 47-623 3-552 (554)
4 PRK11660 putative transporter; 100.0 1.4E-89 3.1E-94 769.0 57.4 524 55-621 19-566 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 1.1E-46 2.4E-51 388.6 16.8 279 164-442 1-280 (280)
6 TIGR03173 pbuX xanthine permea 100.0 2.1E-27 4.5E-32 257.0 33.5 333 76-448 11-364 (406)
7 TIGR00801 ncs2 uracil-xanthine 100.0 1.1E-26 2.4E-31 251.2 31.1 336 74-447 19-379 (415)
8 PRK10720 uracil transporter; P 100.0 1.4E-26 3E-31 250.4 31.6 356 76-478 30-414 (428)
9 COG2252 Xanthine/uracil/vitami 100.0 5.1E-26 1.1E-30 238.2 32.6 369 62-471 16-405 (436)
10 TIGR03616 RutG pyrimidine util 99.9 9.3E-23 2E-27 220.5 33.1 328 66-432 30-372 (429)
11 COG2233 UraA Xanthine/uracil p 99.9 1E-22 2.2E-27 215.1 23.2 307 96-436 57-376 (451)
12 PF13792 Sulfate_tra_GLY: Sulf 99.9 1.7E-24 3.7E-29 177.8 7.3 83 51-133 1-84 (84)
13 PRK11412 putative uracil/xanth 99.9 4.7E-21 1E-25 205.8 31.8 333 75-437 23-372 (433)
14 PF00860 Xan_ur_permease: Perm 99.9 1.9E-20 4.2E-25 201.5 30.1 345 66-438 1-365 (389)
15 PF01740 STAS: STAS domain; I 99.7 2.9E-18 6.3E-23 152.9 8.1 117 497-614 1-117 (117)
16 TIGR02886 spore_II_AA anti-sig 99.7 4E-17 8.7E-22 142.8 10.4 102 502-615 5-106 (106)
17 cd07041 STAS_RsbR_RsbS_like Su 99.7 8.8E-17 1.9E-21 141.4 10.7 102 502-615 7-109 (109)
18 TIGR00843 benE benzoate transp 99.7 7.5E-14 1.6E-18 146.8 30.0 342 67-465 22-391 (395)
19 TIGR00834 ae anion exchange pr 99.7 1.1E-13 2.3E-18 158.0 32.9 351 67-425 370-791 (900)
20 cd06844 STAS Sulphate Transpor 99.6 2.3E-15 5.1E-20 130.1 10.0 92 502-602 5-96 (100)
21 KOG1172 Na+-independent Cl/HCO 99.6 7.7E-12 1.7E-16 139.3 33.5 338 79-425 373-767 (876)
22 PF03594 BenE: Benzoate membra 99.5 1E-11 2.3E-16 128.3 29.4 275 147-467 87-377 (378)
23 TIGR00377 ant_ant_sig anti-ant 99.5 6.5E-14 1.4E-18 122.8 9.1 100 502-613 9-108 (108)
24 cd07042 STAS_SulP_like_sulfate 99.4 1.1E-12 2.3E-17 114.6 11.9 101 501-609 5-105 (107)
25 cd07043 STAS_anti-anti-sigma_f 99.3 8.8E-12 1.9E-16 107.1 10.3 90 503-602 6-95 (99)
26 COG1366 SpoIIAA Anti-anti-sigm 99.3 1E-11 2.3E-16 110.5 10.8 98 507-616 15-112 (117)
27 KOG1292 Xanthine/uracil transp 99.2 1.5E-09 3.2E-14 114.2 22.0 305 96-432 54-398 (510)
28 PF00955 HCO3_cotransp: HCO3- 99.2 4.1E-12 9E-17 138.1 1.4 349 71-427 38-474 (510)
29 COG3135 BenE Uncharacterized p 99.1 1.5E-08 3.2E-13 102.6 22.9 275 147-468 102-393 (402)
30 PF13466 STAS_2: STAS domain 99.1 2.4E-10 5.2E-15 94.4 8.3 80 509-599 1-80 (80)
31 PF11840 DUF3360: Protein of u 98.0 0.0033 7.2E-08 64.6 23.8 236 151-417 145-398 (492)
32 COG3113 Predicted NTP binding 97.7 0.00016 3.5E-09 60.2 7.8 84 508-602 13-96 (99)
33 PF11964 SpoIIAA-like: SpoIIAA 93.8 0.045 9.7E-07 47.5 2.6 105 505-619 1-108 (109)
34 TIGR00815 sulP high affinity s 93.5 3.6 7.8E-05 46.9 18.0 111 308-424 14-142 (563)
35 PRK10720 uracil transporter; P 93.3 0.7 1.5E-05 50.6 11.4 60 346-409 261-320 (428)
36 TIGR03173 pbuX xanthine permea 92.9 3.1 6.8E-05 45.2 15.8 109 73-198 225-343 (406)
37 COG0659 SUL1 Sulfate permease 92.1 2.9 6.4E-05 47.3 14.5 107 312-424 25-143 (554)
38 PF13344 Hydrolase_6: Haloacid 92.0 0.34 7.4E-06 41.6 5.6 75 548-624 1-80 (101)
39 TIGR00801 ncs2 uracil-xanthine 91.6 2.9 6.3E-05 45.7 13.6 117 68-201 235-362 (415)
40 PF14213 DUF4325: Domain of un 91.3 0.98 2.1E-05 36.3 7.1 66 519-595 2-70 (74)
41 PRK11660 putative transporter; 90.7 9.1 0.0002 43.7 16.9 115 61-193 274-394 (568)
42 PF00860 Xan_ur_permease: Perm 88.4 1.7 3.7E-05 47.0 8.5 72 329-400 245-322 (389)
43 COG2233 UraA Xanthine/uracil p 87.8 2.6 5.7E-05 45.9 9.2 67 311-377 250-328 (451)
44 PRK11412 putative uracil/xanth 84.5 6.7 0.00015 43.0 10.4 54 344-397 274-327 (433)
45 PF00916 Sulfate_transp: Sulfa 82.1 3.3 7.1E-05 42.4 6.6 117 59-193 140-262 (280)
46 KOG3040 Predicted sugar phosph 81.8 2.6 5.6E-05 40.7 5.1 79 543-623 5-88 (262)
47 COG5439 Uncharacterized conser 81.6 2.7 5.8E-05 34.9 4.4 43 545-587 46-89 (112)
48 PRK09928 choline transport pro 81.0 48 0.001 38.4 15.7 48 522-584 528-575 (679)
49 PF09345 DUF1987: Domain of un 78.7 5.6 0.00012 34.0 5.7 70 506-582 9-81 (99)
50 TIGR00640 acid_CoA_mut_C methy 77.1 22 0.00048 32.1 9.5 96 503-622 28-127 (132)
51 PRK02261 methylaspartate mutas 75.8 26 0.00057 31.8 9.7 73 544-624 54-136 (137)
52 TIGR03616 RutG pyrimidine util 74.3 14 0.0003 40.6 8.8 113 69-198 249-370 (429)
53 cd02071 MM_CoA_mut_B12_BD meth 71.1 39 0.00085 29.8 9.5 68 544-619 50-121 (122)
54 KOG2882 p-Nitrophenyl phosphat 70.0 16 0.00034 37.5 7.3 77 545-622 22-103 (306)
55 PF13788 DUF4180: Domain of un 66.7 70 0.0015 28.0 9.7 100 504-617 4-112 (113)
56 PLN02645 phosphoglycolate phos 63.4 26 0.00056 36.6 7.8 73 545-619 28-105 (311)
57 TIGR00843 benE benzoate transp 62.3 1.8E+02 0.0039 31.5 13.8 106 311-419 23-145 (395)
58 TIGR01452 PGP_euk phosphoglyco 62.2 15 0.00033 37.6 5.8 74 545-620 2-80 (279)
59 PRK10444 UMP phosphatase; Prov 62.2 18 0.00038 36.5 6.1 73 546-620 2-79 (248)
60 PRK11778 putative inner membra 61.3 74 0.0016 33.5 10.5 70 503-582 89-159 (330)
61 TIGR01684 viral_ppase viral ph 61.2 22 0.00048 36.6 6.5 60 543-602 124-189 (301)
62 COG4618 ArpD ABC-type protease 60.8 42 0.00092 37.1 8.8 76 543-620 489-564 (580)
63 TIGR01458 HAD-SF-IIA-hyp3 HAD- 60.3 15 0.00033 37.1 5.3 73 546-620 2-83 (257)
64 PRK03659 glutathione-regulated 59.8 1.6E+02 0.0034 34.0 13.9 75 521-619 409-483 (601)
65 TIGR01457 HAD-SF-IIA-hyp2 HAD- 57.9 20 0.00044 36.0 5.7 74 546-621 2-80 (249)
66 cd07023 S49_Sppa_N_C Signal pe 55.3 66 0.0014 31.3 8.7 65 506-580 2-69 (208)
67 TIGR01459 HAD-SF-IIA-hyp4 HAD- 55.0 33 0.00071 34.3 6.6 73 545-619 8-85 (242)
68 PHA00736 hypothetical protein 55.0 61 0.0013 25.0 6.3 68 83-160 4-72 (79)
69 TIGR00706 SppA_dom signal pept 52.7 76 0.0016 30.9 8.6 58 506-574 2-59 (207)
70 cd07019 S49_SppA_1 Signal pept 51.1 79 0.0017 30.9 8.5 67 506-582 2-75 (211)
71 PRK03562 glutathione-regulated 48.9 3.1E+02 0.0067 31.7 14.1 42 544-600 423-464 (621)
72 cd07022 S49_Sppa_36K_type Sign 48.3 89 0.0019 30.6 8.4 46 520-575 27-72 (214)
73 PF08496 Peptidase_S49_N: Pept 48.1 66 0.0014 29.9 6.8 33 502-534 96-128 (155)
74 TIGR01501 MthylAspMutase methy 46.2 48 0.001 30.1 5.5 71 545-623 53-133 (134)
75 cd00394 Clp_protease_like Case 44.5 56 0.0012 30.1 6.0 57 508-574 1-57 (161)
76 KOG1292 Xanthine/uracil transp 44.1 75 0.0016 34.9 7.4 117 50-186 255-384 (510)
77 COG0647 NagD Predicted sugar p 43.4 59 0.0013 33.2 6.3 78 545-623 8-90 (269)
78 COG4769 Predicted membrane pro 42.6 1.5E+02 0.0033 27.7 8.0 117 75-197 38-160 (181)
79 PHA03398 viral phosphatase sup 41.9 67 0.0014 33.3 6.4 60 543-602 126-191 (303)
80 KOG0236 Sulfate/bicarbonate/ox 41.8 4.2E+02 0.009 31.0 13.6 119 55-191 313-440 (665)
81 TIGR02717 AcCoA-syn-alpha acet 41.3 2.5E+02 0.0055 30.9 11.4 93 512-622 344-444 (447)
82 COG2185 Sbm Methylmalonyl-CoA 40.6 1.7E+02 0.0036 26.9 8.0 72 545-624 64-139 (143)
83 PRK11475 DNA-binding transcrip 40.3 87 0.0019 30.6 6.8 59 545-605 38-99 (207)
84 COG0733 Na+-dependent transpor 40.1 5.1E+02 0.011 28.5 13.0 39 326-364 230-268 (439)
85 COG1137 YhbG ABC-type (unclass 39.5 1.3E+02 0.0028 29.5 7.4 52 544-598 157-208 (243)
86 PF00072 Response_reg: Respons 39.3 1.9E+02 0.0041 23.9 8.2 69 516-602 28-98 (112)
87 PF10337 DUF2422: Protein of u 38.6 5.8E+02 0.013 28.2 13.9 79 384-470 135-213 (459)
88 PRK10669 putative cation:proto 38.5 6.4E+02 0.014 28.6 16.7 56 521-600 426-481 (558)
89 TIGR00955 3a01204 The Eye Pigm 37.6 1.4E+02 0.003 34.5 9.0 75 545-621 185-261 (617)
90 COG1296 AzlC Predicted branche 37.6 4.4E+02 0.0094 26.4 12.9 51 63-118 10-63 (238)
91 TIGR00210 gltS sodium--glutama 36.7 1.4E+02 0.003 32.4 8.2 39 155-193 9-51 (398)
92 TIGR00822 EII-Sor PTS system, 34.7 2.5E+02 0.0054 28.6 9.2 24 168-191 165-188 (265)
93 TIGR01672 AphA HAD superfamily 34.6 1.8E+02 0.0038 29.1 8.1 77 512-602 43-161 (237)
94 COG1121 ZnuC ABC-type Mn/Zn tr 34.0 1.1E+02 0.0025 30.9 6.5 43 543-586 156-198 (254)
95 COG1030 NfeD Membrane-bound se 33.8 83 0.0018 34.2 5.8 66 504-583 26-91 (436)
96 PRK09426 methylmalonyl-CoA mut 33.1 2.9E+02 0.0063 32.5 10.6 74 544-625 633-710 (714)
97 TIGR01016 sucCoAbeta succinyl- 32.1 3.4E+02 0.0074 29.1 10.5 85 518-620 293-383 (386)
98 cd03412 CbiK_N Anaerobic cobal 32.0 1.7E+02 0.0037 26.0 6.8 55 559-621 12-68 (127)
99 COG1433 Uncharacterized conser 31.9 1.6E+02 0.0035 26.1 6.4 52 569-623 57-109 (121)
100 TIGR01686 FkbH FkbH-like domai 31.6 90 0.002 32.6 5.8 59 544-602 2-78 (320)
101 PF03956 DUF340: Membrane prot 31.5 1E+02 0.0023 29.7 5.6 55 405-459 23-78 (191)
102 COG0637 Predicted phosphatase/ 31.5 62 0.0013 31.9 4.2 40 564-603 89-130 (221)
103 PLN03211 ABC transporter G-25; 31.2 1.4E+02 0.0031 34.7 7.7 75 545-621 225-301 (659)
104 PF02308 MgtC: MgtC family; I 30.2 3.9E+02 0.0085 24.0 8.9 34 369-402 13-47 (134)
105 cd07018 S49_SppA_67K_type Sign 30.2 1.6E+02 0.0036 28.9 7.0 53 519-581 30-82 (222)
106 PF03818 MadM: Malonate/sodium 30.0 1.7E+02 0.0037 22.4 5.2 17 261-277 41-57 (60)
107 PLN00124 succinyl-CoA ligase [ 29.4 1.9E+02 0.0042 31.6 7.9 86 519-620 329-418 (422)
108 cd07021 Clp_protease_NfeD_like 29.0 1.1E+02 0.0025 29.0 5.4 47 506-562 1-47 (178)
109 PF02579 Nitro_FeMo-Co: Dinitr 28.6 1.4E+02 0.0031 24.4 5.4 48 569-619 45-93 (94)
110 PF03616 Glt_symporter: Sodium 28.0 2.2E+02 0.0048 30.5 8.0 34 156-189 10-47 (368)
111 cd02067 B12-binding B12 bindin 27.6 4E+02 0.0086 22.9 8.8 65 544-619 50-118 (119)
112 TIGR01460 HAD-SF-IIA Haloacid 27.4 1.2E+02 0.0025 30.2 5.4 71 548-620 1-77 (236)
113 COG2252 Xanthine/uracil/vitami 27.3 6.7E+02 0.015 27.5 11.4 78 96-193 286-363 (436)
114 PRK00696 sucC succinyl-CoA syn 27.0 5.3E+02 0.011 27.7 10.9 87 518-621 293-384 (388)
115 PF04206 MtrE: Tetrahydrometha 26.8 4.1E+02 0.0089 26.4 8.6 23 89-111 51-73 (269)
116 PRK09757 PTS system N-acetylga 26.1 6.8E+02 0.015 25.5 10.7 63 400-468 167-238 (267)
117 PRK09757 PTS system N-acetylga 25.8 3.6E+02 0.0079 27.5 8.6 23 169-191 167-189 (267)
118 PF06946 Phage_holin_5: Phage 25.7 1.2E+02 0.0025 25.6 4.1 14 262-275 37-50 (93)
119 cd02072 Glm_B12_BD B12 binding 25.7 1.4E+02 0.003 26.9 4.9 66 545-618 51-126 (128)
120 PF03609 EII-Sor: PTS system s 25.7 5.2E+02 0.011 25.9 9.6 23 169-191 167-189 (238)
121 PRK08699 DNA polymerase III su 25.5 5.6E+02 0.012 26.9 10.4 69 545-620 113-183 (325)
122 COG0786 GltS Na+/glutamate sym 25.4 3.5E+02 0.0076 29.2 8.5 43 152-194 8-54 (404)
123 PRK10692 hypothetical protein; 25.2 1.3E+02 0.0028 24.8 4.2 44 63-108 6-57 (92)
124 PF13401 AAA_22: AAA domain; P 24.9 82 0.0018 27.4 3.5 58 519-591 71-129 (131)
125 cd03238 ABC_UvrA The excision 24.6 2.5E+02 0.0054 26.6 6.8 45 544-589 107-151 (176)
126 PF07894 DUF1669: Protein of u 23.9 1.8E+02 0.0038 30.0 5.9 63 518-595 130-192 (284)
127 PF00308 Bac_DnaA: Bacterial d 23.8 2.1E+02 0.0045 28.1 6.4 40 544-585 97-138 (219)
128 PRK10949 protease 4; Provision 23.6 3.9E+02 0.0085 30.9 9.3 73 501-583 323-402 (618)
129 PF11340 DUF3142: Protein of u 23.4 4.7E+02 0.01 25.0 8.2 76 504-587 5-84 (181)
130 cd00851 MTH1175 This uncharact 23.4 2E+02 0.0042 24.0 5.5 47 569-618 55-102 (103)
131 TIGR00705 SppA_67K signal pept 23.3 3.9E+02 0.0085 30.6 9.3 71 502-582 306-383 (584)
132 COG1509 KamA Lysine 2,3-aminom 23.3 2.5E+02 0.0055 29.8 7.0 114 500-621 184-312 (369)
133 TIGR01113 mtrE N5-methyltetrah 23.0 5.6E+02 0.012 25.7 8.8 42 89-135 51-92 (283)
134 COG1512 Beta-propeller domains 22.9 3.8E+02 0.0083 27.4 8.1 114 506-627 34-166 (271)
135 TIGR00705 SppA_67K signal pept 22.9 2.7E+02 0.0059 31.9 7.9 53 521-582 79-131 (584)
136 COG0053 MMT1 Predicted Co/Zn/C 22.7 8.7E+02 0.019 25.2 13.6 28 507-534 249-276 (304)
137 TIGR01662 HAD-SF-IIIA HAD-supe 22.7 1.5E+02 0.0033 25.9 4.9 58 565-622 29-98 (132)
138 PRK15065 PTS system mannose-sp 22.6 8.3E+02 0.018 24.9 13.4 24 168-191 166-189 (262)
139 PRK14046 malate--CoA ligase su 22.4 6.9E+02 0.015 27.0 10.5 88 518-623 293-386 (392)
140 KOG1533 Predicted GTPase [Gene 22.3 1.3E+02 0.0029 30.0 4.5 42 544-587 96-138 (290)
141 PF05145 AmoA: Putative ammoni 22.3 5.1E+02 0.011 27.1 9.3 49 357-406 85-133 (318)
142 COG4152 ABC-type uncharacteriz 22.1 4.9E+02 0.011 26.5 8.3 72 543-616 147-219 (300)
143 TIGR00930 2a30 K-Cl cotranspor 22.1 1.4E+03 0.03 28.1 14.0 37 567-603 627-668 (953)
144 TIGR02230 ATPase_gene1 F0F1-AT 22.0 1.4E+02 0.0031 25.5 4.1 41 233-273 52-92 (100)
145 TIGR01664 DNA-3'-Pase DNA 3'-p 21.9 1.6E+02 0.0035 27.5 5.0 56 544-599 12-94 (166)
146 PRK00972 tetrahydromethanopter 21.9 6.3E+02 0.014 25.5 9.0 41 89-135 58-98 (292)
147 PRK01973 septum formation inhi 21.4 4.2E+02 0.009 27.1 8.0 81 506-598 18-98 (271)
148 cd06207 CyPoR_like NADPH cytoc 20.9 3.9E+02 0.0084 28.7 8.3 53 569-627 321-377 (382)
149 COG0565 LasT rRNA methylase [T 20.7 1.3E+02 0.0028 30.2 4.1 68 544-619 4-74 (242)
150 TIGR01990 bPGM beta-phosphoglu 20.7 1.4E+02 0.0031 27.7 4.5 38 565-602 91-128 (185)
151 TIGR02663 nifX nitrogen fixati 20.2 3.2E+02 0.0069 23.9 6.2 50 576-627 62-112 (119)
152 PF04156 IncA: IncA protein; 20.1 2.6E+02 0.0057 26.5 6.2 24 178-201 38-61 (191)
153 PF12340 DUF3638: Protein of u 20.0 5.2E+02 0.011 25.7 8.2 81 506-601 72-152 (229)
154 PTZ00445 p36-lilke protein; Pr 20.0 2.6E+02 0.0057 27.5 6.0 48 543-590 41-104 (219)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-100 Score=857.06 Aligned_cols=622 Identities=36% Similarity=0.644 Sum_probs=553.0
Q ss_pred cccccCCCCCchHHHHHHhchhccCCCCcchhhhhch----HHHHHHHhcccccccccccCCc-hhhhhhHHHHHHHHHH
Q 006663 4 SLSVNFSGPKSFSTKLKSKCKETLFPDDPFKQFRNEK----HRAIKALQYFIPFFEWIPNYNL-KLLRYDVLAGITITSL 78 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~w~~~y~~-~~l~~D~~aGlt~~~~ 78 (636)
++..+.|+.++..++.++..+++..++++.++++++. ++..+.+++++|+++|+|+|++ +|+.+|++||+|+|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l 93 (665)
T KOG0236|consen 14 RASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSL 93 (665)
T ss_pred cccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeee
Confidence 4667788888888888888887766666666666543 4678899999999999999999 8999999999999999
Q ss_pred HhchHhHHHHHhCCCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCCCCC---ChhhHHHHHHHHHH
Q 006663 79 AIPQGISYAKLASIPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVPPKK---DPTLYLHLVFTATF 155 (636)
Q Consensus 79 ~iPq~~aya~laglp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~~---~~~~~~~~~~~~~~ 155 (636)
.+||+||||.+||+||+|||||+++|+++|++||+|||+++||+|++|+|++.++++..+... ++..+++++.+++|
T Consensus 94 ~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~ 173 (665)
T KOG0236|consen 94 SVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTF 173 (665)
T ss_pred ecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776554322 34567899999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHH---HHHHhhCCCCchHHHH
Q 006663 156 FTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVL---HAVFSNRKEWRWESAV 232 (636)
Q Consensus 156 l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 232 (636)
++|++|+++|+||+|++++|+|+|++.||++|+|++++.+|+|.++|++..+...+....+ .+...+.... +.+++
T Consensus 174 l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 252 (665)
T KOG0236|consen 174 LTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT-LATLV 252 (665)
T ss_pred HHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc-chhhh
Confidence 9999999999999999999999999999999999999999999999998544444433222 2233333333 77899
Q ss_pred HHHHHHHHHHHHHH-hhhcCCcccccccchhhHHHHHHHHHHHHhhcccc-CeeeeccCCCCCCCCCCCcCccChhhHHH
Q 006663 233 IGISFLIFLQFTRY-LKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKH-GIQIVGDLRKGINPPSIGYLNFKSEYLTV 310 (636)
Q Consensus 233 lg~~~l~~ll~~~~-~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~-~v~~~g~ip~g~p~~~~~~~~~~~~~~~~ 310 (636)
++++++++++..|. ..++.++.+|+|.|.+++.++++|+++|.++.++. ....++++|.|+|+|.+|.+++.. .
T Consensus 253 ~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~----~ 328 (665)
T KOG0236|consen 253 LSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP----Q 328 (665)
T ss_pred hHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----H
Confidence 99999999999994 44444566668999999999999999999998764 455667999999999999887653 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcCCCCchhHHHHH
Q 006663 311 TVKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMS 390 (636)
Q Consensus 311 ~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga~T~la~i~~~ 390 (636)
.++.++++++++++|+++++|+++++++|++|.||||+|+|++|++||||+|+|++++++||++|.++|+|||+++++++
T Consensus 329 ~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~ 408 (665)
T KOG0236|consen 329 VIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSA 408 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHH
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-cCCHHHHHHHhcCCcchhhHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 006663 391 FCMMLVLLFLAPLFSYTPLVALSAIIMSAMFG-LINYEEAILLFKVDKLDFSICMAAFLGVAFISMDIGLMLSVGLALLR 469 (636)
Q Consensus 391 ~~~ll~~~~l~~ll~~IP~~vLa~ili~~~~~-li~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gi~~gv~~s~~~ 469 (636)
+++++.+++++|++++||+|+||+++++++.+ +.+.++++.+||.+|.|+++|+.|++.+++.+++.|+++|++++++.
T Consensus 409 ~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ 488 (665)
T KOG0236|consen 409 ALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFF 488 (665)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999 67999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccccCCCccccccccccccCCCcEEEEEecCceeeechHHHHHHHH--HHHHhhh---cc-cCCCCC
Q 006663 470 TLIYVARPATCKLGKISDSNLYLDTEQYQHAQGFPGILILQLGSPIYFANCNYIRERVL--RWIRDEQ---VL-SNSKPD 543 (636)
Q Consensus 470 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~f~na~~~~~~l~--~~i~~~~---~~-~~~~~~ 543 (636)
++.|.+||+...++++++++.|++.++|++.++.++++|+|++++++|.|.+.+++++. +.+++.+ +. ++...+
T Consensus 489 ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (665)
T KOG0236|consen 489 IILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHEN 568 (665)
T ss_pred HHHHhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999998773 4444321 11 111223
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhc
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQ 623 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~ 623 (636)
+.+.+|+||++++++|++|+.+|+++.+++++++++++++|+++++++.|++.++.+.++++++|.|++||++.++.++.
T Consensus 569 ~~~~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~~~~ 648 (665)
T KOG0236|consen 569 SIHSVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVSELS 648 (665)
T ss_pred cceEEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999999999999999988999999999999999999999888
Q ss_pred cccccCC
Q 006663 624 KEKHQND 630 (636)
Q Consensus 624 ~~~~~~~ 630 (636)
......|
T Consensus 649 ~~~~~~~ 655 (665)
T KOG0236|consen 649 RGTDEEV 655 (665)
T ss_pred ccccccc
Confidence 7666554
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=7.6e-98 Score=835.78 Aligned_cols=560 Identities=41% Similarity=0.724 Sum_probs=518.6
Q ss_pred ccccccccCCchhhhhhHHHHHHHHHHHhchHhHHHHHhCCCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHH
Q 006663 52 PFFEWIPNYNLKLLRYDVLAGITITSLAIPQGISYAKLASIPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIAD 131 (636)
Q Consensus 52 p~~~w~~~y~~~~l~~D~~aGlt~~~~~iPq~~aya~laglp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~ 131 (636)
|+++|+++|+++++++|++||+|++++.+||+||||.++|+||++|||++++++++|++||+||++++||++.+++++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCc
Q 006663 132 TIGQKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTD 211 (636)
Q Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~ 211 (636)
++.++..+......+.+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|+.|+.+|++.++|++..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99987644332246788888999999999999999999999999999999999999999999999999999975334556
Q ss_pred HHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeecc
Q 006663 212 VVSVLHAVFSNRKEW---RWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGD 288 (636)
Q Consensus 212 ~~~~~~~~~~~~~~~---~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ 288 (636)
+.+.+.+.+.++++. ||++++++++++++++..+++.+++++..+.+.|.+++++++++++++.++.+++++..+|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 777777777777665 99999999999999999998888888776667778999999999999998888889999999
Q ss_pred CCCCCCCCCCCcCccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhcccccCCcc
Q 006663 289 LRKGINPPSIGYLNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGP 368 (636)
Q Consensus 289 ip~g~p~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s 368 (636)
+|.|+|.+.+|. +++..+...++.++.+++++++|+++++++++++++|++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~--~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPIT--LDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 999997666554 455678889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcchhhHHHHHHH
Q 006663 369 FSKTAVNFNAGCKTAMSNVVMSFCMMLVLLFLAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKLDFSICMAAFL 448 (636)
Q Consensus 369 ~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v~~~t~~ 448 (636)
++||++|.++|+|||++++++++++++++++++|+++++|++++|+++++++++|+++++++++||.++.|+.++++|++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccccccCCCcEEEEEecCceeeechHHHHHHHH
Q 006663 449 GVAFISMDIGLMLSVGLALLRTLIYVARPATCKLGKISDSNLYLDTEQYQHAQGFPGILILQLGSPIYFANCNYIRERVL 528 (636)
Q Consensus 449 ~~~~~~~~~Gi~~gv~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~f~na~~~~~~l~ 528 (636)
+++++|++.|+++|+++|++.+++|.+||+..+++++++++.||+.+++++.++.|+++++|++|+|+|+|+++|++++.
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~ 478 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAEDLKDRLL 478 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999999999998
Q ss_pred HHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccCCcccc
Q 006663 529 RWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVF 608 (636)
Q Consensus 529 ~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if 608 (636)
+.++++. +++.++++.+++|+||++|+++|+||+++|.++.++++++|+++.++++++++++.|+++|+.+.++++++|
T Consensus 479 ~~~~~~~-~~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~f 557 (563)
T TIGR00815 479 KRIEDET-RRELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGGLVELIGEEHFF 557 (563)
T ss_pred HHHhhhc-cccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCCchhhcCCccee
Confidence 8766321 111223457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHH
Q 006663 609 LSIEDA 614 (636)
Q Consensus 609 ~t~~~A 614 (636)
+|.|||
T Consensus 558 ~s~~~A 563 (563)
T TIGR00815 558 PSVSDA 563 (563)
T ss_pred CChhhC
Confidence 999986
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-91 Score=766.16 Aligned_cols=547 Identities=30% Similarity=0.529 Sum_probs=510.6
Q ss_pred HhcccccccccccCCchhhhhhHHHHHHHHHHHhchHhHHHHHhCCCccchhhhhhhhhHhhhhccCCcccccchhHHHH
Q 006663 47 LQYFIPFFEWIPNYNLKLLRYDVLAGITITSLAIPQGISYAKLASIPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACS 126 (636)
Q Consensus 47 ~~~~~p~~~w~~~y~~~~l~~D~~aGlt~~~~~iPq~~aya~laglp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~a 126 (636)
+.+++|..+|.+.|+.+|+++|++||+|+|++++||+||||..+|+||++|||++++++++|++||+||.+++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCcccc
Q 006663 127 LLIADTIGQKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHF 206 (636)
Q Consensus 127 l~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~ 206 (636)
+++++++.+.. +.+++.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|+.|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998642 456889999999999999999999999999999999999999999999999999999999752
Q ss_pred CCCCcHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccc--cCee
Q 006663 207 TTKTDVVSVLHAVFSNRKEWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEK--HGIQ 284 (636)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~--~~v~ 284 (636)
..++.+.+..++++..++||.+++++++++++++.++++.+++| +++++++++|.++|.++++. +| +
T Consensus 157 --~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G-~ 225 (554)
T COG0659 157 --VSGFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG-E 225 (554)
T ss_pred --ccchHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc-c
Confidence 23378888889999999999999999999999999998877766 78999999999999999874 55 6
Q ss_pred eeccCCCCCCCCCCCcCccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhccccc
Q 006663 285 IVGDLRKGINPPSIGYLNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYL 364 (636)
Q Consensus 285 ~~g~ip~g~p~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p 364 (636)
+.+++|.++|.+.+|.++ +..+...++.++.+++++++|++.++++++.++|+++|.||||++||++|+++|+|||+|
T Consensus 226 i~~~lp~~~~~~~~P~~~--~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p 303 (554)
T COG0659 226 IPGSLPSGLPHFRLPNVS--LSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIP 303 (554)
T ss_pred CcccCCcCCCcccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCcc
Confidence 888999999888777765 567889999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHh-cCCcchhhHH
Q 006663 365 TTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLFLAPLFSYTPLVALSAIIMSAMFGLINYEEAILLF-KVDKLDFSIC 443 (636)
Q Consensus 365 ~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~-~~~~~d~~v~ 443 (636)
+|++++||++|.++|+|||++++++|+++++++++++|++++||+|+|++++++++++|++++.++.++ |.++.|+.++
T Consensus 304 ~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~ 383 (554)
T COG0659 304 ATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVL 383 (554)
T ss_pred ccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998854 5888999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccccccCCCcEEEEEecCceeeechHHH
Q 006663 444 MAAFLGVAFISMDIGLMLSVGLALLRTLIYVARPATCKLGKISDSNLYLDTEQYQHAQGFPGILILQLGSPIYFANCNYI 523 (636)
Q Consensus 444 ~~t~~~~~~~~~~~Gi~~gv~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~f~na~~~ 523 (636)
++|++++++.+++.|+.+|+++|++.+++|.+||+....++.++.+. ++.++++..+..|++.++|++|+++|+|++++
T Consensus 384 ~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~~ 462 (554)
T COG0659 384 LTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADRL 462 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHHH
Confidence 99999999999999999999999999999999999988888877655 56677888889999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccC
Q 006663 524 RERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIG 603 (636)
Q Consensus 524 ~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 603 (636)
++++.+..++ +.+.+++|+++++++|.|+.++|+++.++++++|+++.+++.+.++++.+++.+..+..+
T Consensus 463 ~~~i~~~~~~----------~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~i~ 532 (554)
T COG0659 463 ERALLGLIEE----------RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAGLLYLVG 532 (554)
T ss_pred HHHHHHHHhc----------cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhccccccc
Confidence 9999986543 378999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCHHHHHHHHHHHhc
Q 006663 604 KDSVFLSIEDAIDACRFSLQ 623 (636)
Q Consensus 604 ~~~if~t~~~Al~~~~~~~~ 623 (636)
.+++|+++++|++.++....
T Consensus 533 ~~~~f~~~~~a~~~~~~~~~ 552 (554)
T COG0659 533 AEHIFDSVDSALEKARKLLA 552 (554)
T ss_pred cccccchhHHHHHHHHHHhc
Confidence 88999999999998886554
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.4e-89 Score=768.98 Aligned_cols=524 Identities=23% Similarity=0.378 Sum_probs=472.2
Q ss_pred cccccCCchhhhhhHHHHHHHHHHHhchHhHHHHHhCCCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhh
Q 006663 55 EWIPNYNLKLLRYDVLAGITITSLAIPQGISYAKLASIPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIG 134 (636)
Q Consensus 55 ~w~~~y~~~~l~~D~~aGlt~~~~~iPq~~aya~laglp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~ 134 (636)
.|+++|+++++++|++||+|++++.+||+||||.+||+||++||||+++++++|++||+||++++||++.+++++++.+.
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHH
Q 006663 135 QKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVS 214 (636)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~ 214 (636)
+. ..+.+..+++++|++|+++|++|+|++.+|+|+||+.||++|+|++++.+|+++++|++..+...++.+
T Consensus 99 ~~---------~~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QF---------GLAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hh---------hHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 53 234466789999999999999999999999999999999999999999999999999975333567888
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeecc------
Q 006663 215 VLHAVFSNRKEWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGD------ 288 (636)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~------ 288 (636)
.+.+++++++++||+++++|++++++++.++++.+|.| .+++++++++++++.++....+++.+|+
T Consensus 170 ~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~~iP--------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~~~ 241 (568)
T PRK11660 170 KVGALFQALPTINWGDALIGIVTLGVLILWPRLKIRLP--------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHYVL 241 (568)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHHHHHHHHhccCCCceeecccccccc
Confidence 89999999999999999999999999988876666554 6799999999999999876666776664
Q ss_pred --------CCCCCCCCCCCc---------CccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHh
Q 006663 289 --------LRKGINPPSIGY---------LNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFG 351 (636)
Q Consensus 289 --------ip~g~p~~~~~~---------~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G 351 (636)
+|.++|.+.+|. .++++..+...++.++.+++++++|++.+++.+++++++++|.||||+++|
T Consensus 242 ~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G 321 (568)
T PRK11660 242 ADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQG 321 (568)
T ss_pred cccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHh
Confidence 666666555552 124666778889999999999999999999999999999999999999999
Q ss_pred HHHhHhhhcccccCCcccchhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHH
Q 006663 352 LMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLFLAPLFSYTPLVALSAIIMSAMFGLINYEEAIL 431 (636)
Q Consensus 352 ~aNi~~slfGg~p~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~ 431 (636)
++|+++|+|||+|++++++||++|.++|+|||++++++++++++++++++|++++||++++|+++++++++|++.+++++
T Consensus 322 ~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~ 401 (568)
T PRK11660 322 LGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD 401 (568)
T ss_pred HHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred Hhc-CCcchhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccccccCCCcEEEEE
Q 006663 432 LFK-VDKLDFSICMAAFLGVAFISMDIGLMLSVGLALLRTLIYVARPATCKLGKISDSNLYLDTEQYQHAQGFPGILILQ 510 (636)
Q Consensus 432 l~~-~~~~d~~v~~~t~~~~~~~~~~~Gi~~gv~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivr 510 (636)
+|| .++.|+.+|+.+++.+++.+++.|+++|++++++.+++|.++++ +.++ .++ .++.+++.++|
T Consensus 402 ~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~~------~~~---~~~~~~i~iv~ 467 (568)
T PRK11660 402 LLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLAP------ISV---QDVPDDVLVLR 467 (568)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----cccc------ccc---ccCCCcEEEEE
Confidence 776 57889999999999999999999999999999999999998754 1111 111 34567899999
Q ss_pred ecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHH
Q 006663 511 LGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVM 590 (636)
Q Consensus 511 l~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~ 590 (636)
++|+|||+|++++++++++.. ++.+++|+||++|+++|+||+++|.++.+++++ |+++++++++++++
T Consensus 468 ~~g~L~F~n~~~l~~~l~~~~-----------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v~ 535 (568)
T PRK11660 468 INGPLFFAAAERLFTELESRT-----------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQPL 535 (568)
T ss_pred eCCeeeeeeHHHHHHHHHhhC-----------CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHHH
Confidence 999999999999999987642 247899999999999999999999999999999 99999999999999
Q ss_pred HHHHhcCCccccCCcccccCHHHHHHHHHHH
Q 006663 591 DKMILSKFIDVIGKDSVFLSIEDAIDACRFS 621 (636)
Q Consensus 591 ~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~ 621 (636)
+.|+++|+.+..+.+++|+|+|||++++++.
T Consensus 536 ~~l~~~gl~~~~~~~~if~~~~~Al~~~~~~ 566 (568)
T PRK11660 536 RTLARAGIQPIPGRLAFYPTLREALADLLRN 566 (568)
T ss_pred HHHHHCCChhhcCcccccCCHHHHHHHHHhh
Confidence 9999999999888889999999999999764
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.1e-46 Score=388.60 Aligned_cols=279 Identities=35% Similarity=0.651 Sum_probs=253.2
Q ss_pred HHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCCC-CchHHHHHHHHHHHHHH
Q 006663 164 LGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRKE-WRWESAVIGISFLIFLQ 242 (636)
Q Consensus 164 lg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~l~~ll 242 (636)
+|++|+|++.+|+|+||+.||++|+|+.++.+|++.++|++..+...+..+.+.++++..++ +||.++++++++++++.
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 58999999999999999999999999999999999999987423344555555666666666 58999999999999998
Q ss_pred HHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCCCCCCCCCCCcCccChhhHHHHHHHHHHHHHHH
Q 006663 243 FTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLRKGINPPSIGYLNFKSEYLTVTVKAGIITALIA 322 (636)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip~g~p~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 322 (636)
..+++.+++++..+.+.|.+++++++++++++.++.+.++++.++++|.++|.|.+|..++++..+.+.++.++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~ 160 (280)
T PF00916_consen 81 IIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVG 160 (280)
T ss_pred hhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHH
Confidence 88888877776666667789999999999999998888889999999999999999854555667788899999999999
Q ss_pred HHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 006663 323 LAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLFLAP 402 (636)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~l~~ 402 (636)
++|++.+++++++++++++|.||||+++|++|+++|+|||+|++++++||++|.++|+|||++++++++++++++++++|
T Consensus 161 ~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~ 240 (280)
T PF00916_consen 161 FIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAP 240 (280)
T ss_pred HHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcchhhH
Q 006663 403 LFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKLDFSI 442 (636)
Q Consensus 403 ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v 442 (636)
+++|+|++++|+++++++++|++++.++.+||.+|.|+++
T Consensus 241 ~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 241 LLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 9999999999999999999999999999999999999863
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=2.1e-27 Score=257.05 Aligned_cols=333 Identities=17% Similarity=0.160 Sum_probs=246.9
Q ss_pred HHHHhchHhHHHHHhCCCc-------cchhhhhhhhhHhhh----hccCCcccccchhHHHHHHHHHHhhccCCCCCChh
Q 006663 76 TSLAIPQGISYAKLASIPP-------IIGLYSSFVPPLVYA----VFGSSKHLAVGTVAACSLLIADTIGQKVPPKKDPT 144 (636)
Q Consensus 76 ~~~~iPq~~aya~laglp~-------~~GL~s~~i~~lv~~----~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~~~~~ 144 (636)
+.+.+|.-++- ..|+|+ ...+.++.++++++. .+|++.++..||.......+..... .
T Consensus 11 ~~i~~p~i~~~--a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~---------~ 79 (406)
T TIGR03173 11 GAVAVPLIVGG--ALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGA---------G 79 (406)
T ss_pred HHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhh---------h
Confidence 45566665543 258887 568889999999996 6799999999997644332222221 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCC
Q 006663 145 LYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRK 224 (636)
Q Consensus 145 ~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~ 224 (636)
..++.+.++.+++|++++++|. .++++.|++|+.|++.++..+|+.+...+++.+.|... .. +
T Consensus 80 ~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~---~~-------------~ 142 (406)
T TIGR03173 80 GGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAG---AP-------------D 142 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCC---cc-------------c
Confidence 3578899999999999999995 68999999999888889999999999999987765421 11 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCCC-CCCCC-CCCcCc
Q 006663 225 EWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLRK-GINPP-SIGYLN 302 (636)
Q Consensus 225 ~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip~-g~p~~-~~~~~~ 302 (636)
..++.+..+++++++++++++++.|++.+ .++.++++++++++++.++..+ .+.+++.|. .+|.| .+..++
T Consensus 143 ~~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~P~ 215 (406)
T TIGR03173 143 FGSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHFGAPT 215 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcCCCCe
Confidence 13455667888888877777665555322 2378999999999999988632 222232221 23322 122234
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC---chhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcC
Q 006663 303 FKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQID---GNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAG 379 (636)
Q Consensus 303 ~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~---~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~G 379 (636)
|++. .+...+.+++++++|++++.++.++..+++.| .|||+.++|++|+++|+||++|.++...+++++..+|
T Consensus 216 f~~~----~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~~tg 291 (406)
T TIGR03173 216 FDLV----AILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQLTG 291 (406)
T ss_pred eCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHHHhC
Confidence 4443 33345668899999999999999988877654 5799999999999999999999886544467888899
Q ss_pred CCCchhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcc---hhhHHHHHHH
Q 006663 380 CKTAMSNVVMSFCMMLVLLF--LAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKL---DFSICMAAFL 448 (636)
Q Consensus 380 a~T~la~i~~~~~~ll~~~~--l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~---d~~v~~~t~~ 448 (636)
++||++++++|++++++.++ ++++++++|.++++++++ +.++++...+++.+++.+.. +..+..+++.
T Consensus 292 ~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l-~~~~~i~~~g~~~l~~~~~~~~rn~~i~g~~~~ 364 (406)
T TIGR03173 292 VKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGL-VMFGMVAASGIRILSKVDFDRRRNLLIVAVSLG 364 (406)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcccCcceehhhHHHHH
Confidence 99999999999999888877 899999999999999888 68999988888888776544 4444444433
No 7
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.96 E-value=1.1e-26 Score=251.15 Aligned_cols=336 Identities=17% Similarity=0.158 Sum_probs=255.7
Q ss_pred HHHHHHhchHhHHHHHhCCCc-------cchhhhhhhhhHhhhhccCCc---ccccchh-HHHHHHHHHHhhccCCCCCC
Q 006663 74 TITSLAIPQGISYAKLASIPP-------IIGLYSSFVPPLVYAVFGSSK---HLAVGTV-AACSLLIADTIGQKVPPKKD 142 (636)
Q Consensus 74 t~~~~~iPq~~aya~laglp~-------~~GL~s~~i~~lv~~~~G~s~---~~~~Gp~-a~~al~~~~~v~~~~~~~~~ 142 (636)
..+.+.+|.-++-+. +++ +..+.++.++++++.+.++.+ +...|+. +..+...... .
T Consensus 19 ~~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~--~------- 86 (415)
T TIGR00801 19 FGGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIG--S------- 86 (415)
T ss_pred HHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHH--h-------
Confidence 345666777666444 344 457889999999999888776 6777876 5554443321 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh--hh--hhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHH
Q 006663 143 PTLYLHLVFTATFFTGIFQTALGFL--RL--GILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHA 218 (636)
Q Consensus 143 ~~~~~~~~~~~~~l~Gv~~lllg~~--rl--g~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~ 218 (636)
...++.+.++.+++|+++++++.+ |+ +++.|++|+.|.++++.++|+.++..+++++.|....++..+
T Consensus 87 -~~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~------- 158 (415)
T TIGR00801 87 -GLGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSAT------- 158 (415)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccc-------
Confidence 113677889999999999999985 43 467999999999999999999999999999887642111111
Q ss_pred HHhhCCCCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCC-CCCCCCC
Q 006663 219 VFSNRKEWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLR-KGINPPS 297 (636)
Q Consensus 219 ~~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip-~g~p~~~ 297 (636)
..++.++.+++.+++++++++++.|++-| .++.++++++++++++.++..+.. .+.+.| .++|.+.
T Consensus 159 ------~~~~~~~~vg~~~l~~~vl~~~~~~g~~~-----~~aiLigiv~g~i~a~~lg~~~~~--~v~~~~~~~lP~~~ 225 (415)
T TIGR00801 159 ------YGSLENLGVAFVVLALIILLNRFGKGFLK-----SISILIGILVGYILALFMGIVDFS--PVIDAPWFSLPTPF 225 (415)
T ss_pred ------cCchhhHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHcCCccch--hhccCcccccCCcc
Confidence 12456788999999888777766555322 237899999999999999863321 122223 2444444
Q ss_pred CCcCccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC----chhHHHHHhHHHhHhhhcccccCCcccchhH
Q 006663 298 IGYLNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQID----GNKEMIAFGLMNIVGSFTSCYLTTGPFSKTA 373 (636)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~----~n~eL~a~G~aNi~~slfGg~p~~~s~srS~ 373 (636)
.|.++|++. .+...+.++++.++|+++..++++++.|++.| .|||+.++|++|+++|+||++|.+++..+++
T Consensus 226 ~~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g 301 (415)
T TIGR00801 226 TFGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIG 301 (415)
T ss_pred CCCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhe
Confidence 333345543 44455778999999999999999998887653 5799999999999999999999999999999
Q ss_pred HhhhcCCCCchhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcc---hhhHHHHHH
Q 006663 374 VNFNAGCKTAMSNVVMSFCMMLVLLF--LAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKL---DFSICMAAF 447 (636)
Q Consensus 374 ~~~~~Ga~T~la~i~~~~~~ll~~~~--l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~---d~~v~~~t~ 447 (636)
++..+|++||++..++|++++++.++ ++++++++|.+++||+++ +.++++...+++.+++.+.. +..+...++
T Consensus 302 ~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~~~r~~~i~~~s~ 379 (415)
T TIGR00801 302 VIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLDNRRNRNIIAASV 379 (415)
T ss_pred eeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccCcccceehHHHHH
Confidence 99999999999999999999999999 999999999999999999 88999988899988875543 344444433
No 8
>PRK10720 uracil transporter; Provisional
Probab=99.96 E-value=1.4e-26 Score=250.40 Aligned_cols=356 Identities=14% Similarity=0.151 Sum_probs=257.3
Q ss_pred HHHHhchHhHHHHHhCCCccchhhhhhhhhHhhhhccC-CcccccchhH-HHHHHHHHHhhccCCCCCChhhHHHHHHHH
Q 006663 76 TSLAIPQGISYAKLASIPPIIGLYSSFVPPLVYAVFGS-SKHLAVGTVA-ACSLLIADTIGQKVPPKKDPTLYLHLVFTA 153 (636)
Q Consensus 76 ~~~~iPq~~aya~laglp~~~GL~s~~i~~lv~~~~G~-s~~~~~Gp~a-~~al~~~~~v~~~~~~~~~~~~~~~~~~~~ 153 (636)
+.+.+|.-+ |+++...+..+.++++++.++++ +.++..||.- ..+.+.... . ..++.+.++
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~---------~~~~~~lga 92 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--P---------LGYEVALGG 92 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--H---------ccHHHHHHH
Confidence 455666633 88888899999999999988774 6677788743 333332211 1 137888999
Q ss_pred HHHHHHHHHHHHHh--hh--hhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCCCCchH
Q 006663 154 TFFTGIFQTALGFL--RL--GILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRKEWRWE 229 (636)
Q Consensus 154 ~~l~Gv~~lllg~~--rl--g~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (636)
.+++|+++++++++ |+ +++.+++|+.|++.+++.+|+.++...++. .|... ...+ ..++.
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~-~g~~~--~~~~-------------~~~~~ 156 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGM-AGLLP--AEGQ-------------TPDSK 156 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhh-ccccC--CCCc-------------ccchH
Confidence 99999999999997 33 468999999999999999999999877763 33211 1111 24566
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeecc-CCCCCCCCCCCcCccChhhH
Q 006663 230 SAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGD-LRKGINPPSIGYLNFKSEYL 308 (636)
Q Consensus 230 ~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~-ip~g~p~~~~~~~~~~~~~~ 308 (636)
++.+++++++++++..++.|++.+. .+.++++++++++++.++..+ ...+++ .+.++|.+..| +|++..+
T Consensus 157 ~~~lalv~l~iil~~~~~~kg~~~~-----~~iLigIvvG~ila~~lG~~d--~~~v~~a~~~~lP~~~~P--~fd~~~i 227 (428)
T PRK10720 157 TIIISMVTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGMVD--TTPIIEAHWFALPTFYTP--RFEWFAI 227 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHH-----hHHHHHHHHHHHHHHHhcCCC--HHHhhcCccccCCCCCCC--cCcHHHH
Confidence 7888999988877665555554332 257999999999999998632 233332 23455544444 4555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----ccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcCCCCch
Q 006663 309 TVTVKAGIITALIALAEGIAIARSFAIMQNE----QIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAM 384 (636)
Q Consensus 309 ~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~----~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga~T~l 384 (636)
..+ +..+++.++|++++..+.++..++ +.|.|||+.++|++|+++|+||++|.+++..+.++...+|.++|.
T Consensus 228 l~l----~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~ 303 (428)
T PRK10720 228 LTI----LPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTW 303 (428)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhH
Confidence 433 444556677888877777665543 347899999999999999999999999988888888889999999
Q ss_pred hHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhc--CCcc---hhhHHHH-----------H
Q 006663 385 SNVVMSFCMMLVLLF--LAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFK--VDKL---DFSICMA-----------A 446 (636)
Q Consensus 385 a~i~~~~~~ll~~~~--l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~--~~~~---d~~v~~~-----------t 446 (636)
+..+++++++++.++ ++++++.||.||+||+.+ +.++++...+++.+|+ .+.. +..+..+ +
T Consensus 304 v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~~ 382 (428)
T PRK10720 304 VIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVN 382 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 999899888888865 899999999999999999 9999999999999964 3322 2232222 2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHhhccc
Q 006663 447 FLGVAFISMDIGLMLSVGLALLRTLIYVARPA 478 (636)
Q Consensus 447 ~~~~~~~~~~~Gi~~gv~~s~~~~~~~~~~~~ 478 (636)
+..+...|+..|.++|++++++...+|.-|+.
T Consensus 383 ~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 383 IGAAELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 22233357788888888888887665555443
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.95 E-value=5.1e-26 Score=238.21 Aligned_cols=369 Identities=16% Similarity=0.237 Sum_probs=289.1
Q ss_pred chhhhhhHHHHHHHHHHHhchHhHHHH--------HhCCCcc----chhhhhhhhhHhhhhccCCcccccch-hHHHHHH
Q 006663 62 LKLLRYDVLAGITITSLAIPQGISYAK--------LASIPPI----IGLYSSFVPPLVYAVFGSSKHLAVGT-VAACSLL 128 (636)
Q Consensus 62 ~~~l~~D~~aGlt~~~~~iPq~~aya~--------laglp~~----~GL~s~~i~~lv~~~~G~s~~~~~Gp-~a~~al~ 128 (636)
-+++++|++||+|+++ +|+|-. .+|+|.. ..+.+++++++.++++.+.| +..+| .+..+..
T Consensus 16 ~t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~An~P-~alapgmglnAfF 89 (436)
T COG2252 16 GTTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLYANLP-IALAPGMGLNAFF 89 (436)
T ss_pred CchHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHcCc-hhhcchhhHHHHH
Confidence 3699999999999998 777753 3677753 35667888999999998877 56665 6667777
Q ss_pred HHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccC
Q 006663 129 IADTIGQKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLGI-LVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFT 207 (636)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~-l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~ 207 (636)
..+++..+. ..||.++++.|++|+++++++++++++ ++|.+|+++..|..+|+|++|....++ -.|+-. .
T Consensus 90 aftvv~~~g-------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~-~~Givv-~ 160 (436)
T COG2252 90 AFTVVLGMG-------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLK-NAGIVV-A 160 (436)
T ss_pred HHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh-hCCeEE-e
Confidence 777776641 358999999999999999999999855 999999999999999999999999998 455521 1
Q ss_pred CCCcHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeec
Q 006663 208 TKTDVVSVLHAVFSNRKEWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVG 287 (636)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g 287 (636)
+.. ....+.+.+.+.+++++.++++..... .+|.+. +.+++++..+++++.++.........+
T Consensus 161 ~~~--------tlv~LG~~~~p~vll~i~G~~l~~~L~--~~~i~G-------aili~i~~~t~~g~~~g~~~~~~~~~~ 223 (436)
T COG2252 161 NPA--------TLVALGDFTSPGVLLAILGLLLIIVLV--SRKIKG-------AILIGILVTTILGIILGIDVHFGGLVG 223 (436)
T ss_pred cCc--------ceEEeecCCCchHHHHHHHHHHHHHHH--HhhccH-------hhhHHHHHHHHHHHHhccccccccccc
Confidence 111 122333444456677777776655543 244553 578899999999999985332222133
Q ss_pred cCCCCCCCCCCCcCccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------cccCchhHHHHHhHHHhHhhhc
Q 006663 288 DLRKGINPPSIGYLNFKS-EYLTVTVKAGIITALIALAEGIAIARSFAIMQN------EQIDGNKEMIAFGLMNIVGSFT 360 (636)
Q Consensus 288 ~ip~g~p~~~~~~~~~~~-~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~------~~~~~n~eL~a~G~aNi~~slf 360 (636)
..|+-. +.+.+.|+.. ......++..+.+.++.++|++++..+.+++.| +..|.+|.+.+++++.++|+++
T Consensus 224 ~~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t~~ga~~ 301 (436)
T COG2252 224 APPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVATVVGALF 301 (436)
T ss_pred CCCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHHHHHHhc
Confidence 333322 2233445543 333455667788899999999999988887643 2357899999999999999999
Q ss_pred ccccCCcccchhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcchh
Q 006663 361 SCYLTTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLFLAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKLDF 440 (636)
Q Consensus 361 Gg~p~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~ 440 (636)
|+.|.+ ++.+|+.....|+||.+++++.|+++++. +|++|+...+|..+.++++++++..|. ..+.++++.|+
T Consensus 302 GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~-----~~v~~id~~d~ 374 (436)
T COG2252 302 GTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALML-----SSVKQIDWSDF 374 (436)
T ss_pred CCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHH-----hhhccCCchhh
Confidence 999966 69999999999999999999999999999 699999999999999999999999988 45788999999
Q ss_pred hHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 006663 441 SICMAAFLGVAFISMDIGLMLSVGLALLRTL 471 (636)
Q Consensus 441 ~v~~~t~~~~~~~~~~~Gi~~gv~~s~~~~~ 471 (636)
...+..|++.+++.+.+.+.-|++++++.+.
T Consensus 375 ~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~ 405 (436)
T COG2252 375 TEAVPAFLTIVMMPLTYSIADGIAFGFISYV 405 (436)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999998874
No 10
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.92 E-value=9.3e-23 Score=220.50 Aligned_cols=328 Identities=13% Similarity=0.151 Sum_probs=230.9
Q ss_pred hhhHHHHHHHHHHHhchHhHHHHHhCCCccchhhhhhhhhHhhh-hccCCcccccchhHHHHHHHHHHhhccCCCCCChh
Q 006663 66 RYDVLAGITITSLAIPQGISYAKLASIPPIIGLYSSFVPPLVYA-VFGSSKHLAVGTVAACSLLIADTIGQKVPPKKDPT 144 (636)
Q Consensus 66 ~~D~~aGlt~~~~~iPq~~aya~laglp~~~GL~s~~i~~lv~~-~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~~~~~ 144 (636)
.+.++.|+.-.+...--.+....+-|+++...+.++.++++++. .+|++.++..|+.......+-.... .. ..+++
T Consensus 30 ~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~-~~--~~~~~ 106 (429)
T TIGR03616 30 AQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATG-YN--GQGTN 106 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHh-hc--ccCCc
Confidence 56777777766633333333333457889899999999999996 6899999999986655432222211 11 11123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHH
Q 006663 145 LYLHLVFTATFFTGIFQTALGFLRL----GILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVF 220 (636)
Q Consensus 145 ~~~~~~~~~~~l~Gv~~lllg~~rl----g~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~ 220 (636)
.+++.+.++++++|++++++|++++ +++.|++|+.|.+-.+..+|+.++...++...|- ++
T Consensus 107 ~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~-------~~-------- 171 (429)
T TIGR03616 107 PNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS-------GF-------- 171 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc-------cc--------
Confidence 3577888999999999999999875 5688899999999999999999998777753221 11
Q ss_pred hhCCCCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhh----cc-ccCeeee-ccCCCCCC
Q 006663 221 SNRKEWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAH----AE-KHGIQIV-GDLRKGIN 294 (636)
Q Consensus 221 ~~~~~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~----~~-~~~v~~~-g~ip~g~p 294 (636)
.+|. ++++++.+++...+.|++-|. .+.++++++|+++++.+. .. ..+.+.+ +..+.++|
T Consensus 172 -----~~~~----al~tl~~i~l~~l~~~~~l~~-----~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~lP 237 (429)
T TIGR03616 172 -----DSWM----AVLTILCIGAVAVFTRGMLQR-----LLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGLP 237 (429)
T ss_pred -----ccHH----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCccccCC
Confidence 1222 223333333333334443221 278999999999988752 21 1233332 22233455
Q ss_pred CCCCCcCccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCc--hhHHHHHhHHHhHhhhcccccCCcccchh
Q 006663 295 PPSIGYLNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQIDG--NKEMIAFGLMNIVGSFTSCYLTTGPFSKT 372 (636)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~--n~eL~a~G~aNi~~slfGg~p~~~s~srS 372 (636)
++..| .|++.. +...+..+++.++|+++..++.++..+++.|. ||++.++|++|+++|+||+.|.+.+..+.
T Consensus 238 ~~~~p--~f~~~~----il~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~ 311 (429)
T TIGR03616 238 NFHTP--VFNANA----MLLIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENI 311 (429)
T ss_pred cCCCc--eEcHHH----HHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeee
Confidence 44444 455433 33445568888999999999998887776665 89999999999999999999999888888
Q ss_pred HHhhhcCCCCchhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHH
Q 006663 373 AVNFNAGCKTAMSNVVMSFCMMLVLLF--LAPLFSYTPLVALSAIIMSAMFGLINYEEAILL 432 (636)
Q Consensus 373 ~~~~~~Ga~T~la~i~~~~~~ll~~~~--l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l 432 (636)
++...+|..||.....++++++++.++ ++.+++.||.||+||+++ +.++++...+++.+
T Consensus 312 g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 312 GVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIW 372 (429)
T ss_pred eeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 888889999999988888887776654 556999999999999998 89999988888844
No 11
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.91 E-value=1e-22 Score=215.15 Aligned_cols=307 Identities=14% Similarity=0.137 Sum_probs=233.0
Q ss_pred chhhhhhhhhHhhhh----ccCCcccccch-hHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006663 96 IGLYSSFVPPLVYAV----FGSSKHLAVGT-VAACSLLIADTIGQKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLG 170 (636)
Q Consensus 96 ~GL~s~~i~~lv~~~----~G~s~~~~~Gp-~a~~al~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg 170 (636)
+.|+++.++++++.+ +|..-+...|. ++..+.+.... ++.. ...+.+.+..+.+|++.++++.+ +.
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~-~~~g-------~~~~~~~G~ii~ag~~~~li~~~-~~ 127 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIG-GTTG-------DGIAALLGGIIAAGLVYFLISPI-VK 127 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHH-hccC-------CchHHHHHHHHHHHHHHHHHHHH-HH
Confidence 459999999999987 44455566665 44455544432 2210 22567788999999999999988 45
Q ss_pred -hhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 006663 171 -ILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRKEWRWESAVIGISFLIFLQFTRYLKN 249 (636)
Q Consensus 171 -~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~ 249 (636)
|+.|++|+.|++-++.-+|+.++...++.+.|.....+..++ .+..++.+++++++++++..++.|
T Consensus 128 ~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~-------------~~~~~l~la~~tl~~il~~~~f~~ 194 (451)
T COG2233 128 IRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDF-------------GSLENLGLALVTLLIILLINRFGK 194 (451)
T ss_pred HHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCccc-------------CchhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999987531122222 456678899999999888877777
Q ss_pred cCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCCC-CCCCCCCCcCccChhhHHHHHHHHHHHHHHHHHHHHH
Q 006663 250 RKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLRK-GINPPSIGYLNFKSEYLTVTVKAGIITALIALAEGIA 328 (636)
Q Consensus 250 ~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip~-g~p~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~ 328 (636)
++-+. .+.++++++|+++++.+|.-+ .+.+.+.|- ++|.|..+...|++.. +...+.++++.+.|+++
T Consensus 195 g~~~~-----i~ILiGlv~G~~la~~~G~vd--f~~v~~a~w~~~P~~~~fg~~F~~~a----il~m~~v~iV~~~E~~G 263 (451)
T COG2233 195 GFLRR-----IPILIGLVVGYLLALFMGMVD--FSGVAEAPWFALPTPFYFGMAFDWGA----ILTMLPVAIVTIVEHTG 263 (451)
T ss_pred hHHHH-----HHHHHHHHHHHHHHHHhCCcC--ccccccCceeeCCcccCCCeeecHHH----HHHHHHHHHHHHHHHhh
Confidence 65442 268999999999999999522 222333221 3444433323566543 44445567777778777
Q ss_pred HHHHHHhhcCcc----cCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcCCCCchhHHHHHHHHHHHHHH--HHH
Q 006663 329 IARSFAIMQNEQ----IDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLF--LAP 402 (636)
Q Consensus 329 ~~~~~~~~~~~~----~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~--l~~ 402 (636)
..++.++..+++ .+.+|.++++|++++++|+||++|.++...+.++...+|.+||++...+|++++++.++ ++.
T Consensus 264 ~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~a 343 (451)
T COG2233 264 DITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGA 343 (451)
T ss_pred hhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHH
Confidence 777776665554 45688999999999999999999999999999999999999999999999999998877 888
Q ss_pred HhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCC
Q 006663 403 LFSYTPLVALSAIIMSAMFGLINYEEAILLFKVD 436 (636)
Q Consensus 403 ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~ 436 (636)
+++.||.||+||+.+ +.++++...+++.+-|.+
T Consensus 344 l~~sIP~pVlGGa~i-vmFG~Ia~sGir~l~~~~ 376 (451)
T COG2233 344 LIQSIPSPVLGGAML-VLFGMIAASGIRILIRNK 376 (451)
T ss_pred HHHhCChhhhhHHHH-HHHHHHHHHHHHHHHhcc
Confidence 999999999999988 889999888888776644
No 12
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.90 E-value=1.7e-24 Score=177.77 Aligned_cols=83 Identities=54% Similarity=1.049 Sum_probs=80.4
Q ss_pred cccccccccCCc-hhhhhhHHHHHHHHHHHhchHhHHHHHhCCCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHH
Q 006663 51 IPFFEWIPNYNL-KLLRYDVLAGITITSLAIPQGISYAKLASIPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLI 129 (636)
Q Consensus 51 ~p~~~w~~~y~~-~~l~~D~~aGlt~~~~~iPq~~aya~laglp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~ 129 (636)
+|+++|+++|++ +|+++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+++++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 699999999997 9999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 006663 130 ADTI 133 (636)
Q Consensus 130 ~~~v 133 (636)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8753
No 13
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.90 E-value=4.7e-21 Score=205.81 Aligned_cols=333 Identities=13% Similarity=0.163 Sum_probs=238.2
Q ss_pred HHHHHhchHhHHHHHhCCCc-------cchhhhhhhhhHhhhhccCCcccccchhHHH-HHHHHHHhhccCCCCCChhhH
Q 006663 75 ITSLAIPQGISYAKLASIPP-------IIGLYSSFVPPLVYAVFGSSKHLAVGTVAAC-SLLIADTIGQKVPPKKDPTLY 146 (636)
Q Consensus 75 ~~~~~iPq~~aya~laglp~-------~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~-al~~~~~v~~~~~~~~~~~~~ 146 (636)
.+.+.+|.-++ ...|+++ +..+..+.+++++..++|++.++..||+... ..+.+...... ..+......
T Consensus 23 ~~~i~vPliva--~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~-~~g~~~~~~ 99 (433)
T PRK11412 23 CNTVVVPPTLL--SAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEA-SRGTPINDI 99 (433)
T ss_pred HHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhccc-ccCccHHHH
Confidence 44566676654 3467777 3578889999999999999999999996654 33333221110 000001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCCC
Q 006663 147 LHLVFTATFFTGIFQTALGFLR-LGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRKE 225 (636)
Q Consensus 147 ~~~~~~~~~l~Gv~~lllg~~r-lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 225 (636)
.....+..+++|++++++|.++ ++++.|++|+.|.+-++.-+|+.++...++.+.|.+. ....++ .+
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~-~~~~~~-----------~~ 167 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPF-GIADPN-----------GK 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCc-cCcccc-----------cc
Confidence 2222346788999999999998 7999999999999999999999999999999988621 111111 11
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHH-HhhccccCeeeeccCCCCCCCCCCCcC-cc
Q 006663 226 WRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAY-FAHAEKHGIQIVGDLRKGINPPSIGYL-NF 303 (636)
Q Consensus 226 ~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~-~~~~~~~~v~~~g~ip~g~p~~~~~~~-~~ 303 (636)
+++..+.+++.++.+++...++.|++-|. .+.++++++|++++. .++. +...+++.+ +.++.|..+ +|
T Consensus 168 ~~~~~~~~a~~~l~~il~~~~~~~g~~~~-----~svLiGiv~G~v~a~~~~g~---d~~~v~~a~--w~~~pfG~P~~F 237 (433)
T PRK11412 168 IQLPPFGLSVAVMCLVLAMIIFLPQRIAR-----YSLLVGTIVGWILWAFCFPS---SHSLSGELH--WQWFPLGSGGAL 237 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHhCC---CcchhccCC--ceeecCCCCCcc
Confidence 23445677788887777776666665433 278999999999854 5554 222223322 111223334 36
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----ccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcC
Q 006663 304 KSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNE----QIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAG 379 (636)
Q Consensus 304 ~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~----~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~G 379 (636)
++.. +...+..+++...|+++..++.++..++ +.+.+|.+.++|++|+++|+||++|.+....+.++-..+|
T Consensus 238 ~~~~----il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~Tg 313 (433)
T PRK11412 238 EPGI----ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTG 313 (433)
T ss_pred CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcC
Confidence 6543 4444556777777877777777766554 3466899999999999999999999999899999999999
Q ss_pred CCCchhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCc
Q 006663 380 CKTAMSNVVMSFCMMLVLLF--LAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDK 437 (636)
Q Consensus 380 a~T~la~i~~~~~~ll~~~~--l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~ 437 (636)
.+||++..++|++++++.++ ++.+++.||.||+||+.+ +.++++...+++.+.|.+.
T Consensus 314 V~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~-~~Fg~I~~~Gi~~l~~~~~ 372 (433)
T PRK11412 314 DYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVML-VSYLPLLGSALVFSQQITF 372 (433)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999877 788999999999999988 5778777777777766554
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.88 E-value=1.9e-20 Score=201.48 Aligned_cols=345 Identities=16% Similarity=0.127 Sum_probs=214.4
Q ss_pred hhhHHHHHHHHHHHhchHhHHHHH----hCC--C----ccchhhhhhhhhHhhhh-ccCCcccccchhHHHHHHHHHHhh
Q 006663 66 RYDVLAGITITSLAIPQGISYAKL----ASI--P----PIIGLYSSFVPPLVYAV-FGSSKHLAVGTVAACSLLIADTIG 134 (636)
Q Consensus 66 ~~D~~aGlt~~~~~iPq~~aya~l----agl--p----~~~GL~s~~i~~lv~~~-~G~s~~~~~Gp~a~~al~~~~~v~ 134 (636)
++++++|++..+...+-.+....+ .|+ + ....+..+.++++++.+ +|...++..||....-. ....+.
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~-~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF-AFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH-HHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh-hhhccc
Confidence 467888888886443333332222 222 1 24578888999999999 88888888887543221 111111
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHH
Q 006663 135 QKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLG-ILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVV 213 (636)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg-~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~ 213 (636)
.. ..+....++.+.++.+++|+++++++++++. ++.+++|+.|.++++.++|+.+....++.+.|.... .+.
T Consensus 80 g~---~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~-~~~--- 152 (389)
T PF00860_consen 80 GM---AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN-PDG--- 152 (389)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS----BTT---
T ss_pred cc---ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc-ccc---
Confidence 10 0123456788899999999999999999984 799999999999999999999999999998887521 111
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCC-CC
Q 006663 214 SVLHAVFSNRKEWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLR-KG 292 (636)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip-~g 292 (636)
....++....+++.++++.+....+.+++.+. .+.++++++++++++.++..+.+-. +.+.| .+
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ailigi~~g~i~~~~~g~~~~~~~-~~~~~~~~ 217 (389)
T PF00860_consen 153 ---------LLVGDGKNLGLAVLTLLFILLLSLFLKGFLRK-----GAILIGIIAGWIVAAILGVVDFSPS-VSSAPWFS 217 (389)
T ss_dssp ----------B---HHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTTSSH--HHHS-SS-
T ss_pred ---------cccccccccccccccchhhhhhhhhhhhhccc-----ccchhhhhhhhhhhhcccccccCcc-cccccccc
Confidence 00133445566666666666655554444332 2789999999999999984222111 22222 12
Q ss_pred CCCC-CCCcCccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----ccCchhHHHHHhHHHhHhhhcccccCCc
Q 006663 293 INPP-SIGYLNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNE----QIDGNKEMIAFGLMNIVGSFTSCYLTTG 367 (636)
Q Consensus 293 ~p~~-~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~----~~~~n~eL~a~G~aNi~~slfGg~p~~~ 367 (636)
+|.+ .|..+.|++ ..+...+...++.++|++++..+.++..+. +.+.+|.+.++|++|+++|+||+.|.+.
T Consensus 218 ~p~~~~~g~p~f~~----~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~ 293 (389)
T PF00860_consen 218 LPSPFPFGWPSFDP----GAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTT 293 (389)
T ss_dssp -------------H----HHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE
T ss_pred cccccccccccccH----HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCcc
Confidence 2211 122222333 445555677888888988888887765543 4557999999999999999999999998
Q ss_pred ccchhHHhhhcCCCCchhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcc
Q 006663 368 PFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLF--LAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKL 438 (636)
Q Consensus 368 s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~--l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~ 438 (636)
+..+.+....+|.+||.++..++++.+++.++ ++|++..||.++++|..++ .++++-..+++.+...+..
T Consensus 294 ~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~ 365 (389)
T PF00860_consen 294 YSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLD 365 (389)
T ss_dssp -HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-
T ss_pred ccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheecccC
Confidence 77788888889999999999999998888775 8999999999999888763 3333334566665544443
No 15
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.74 E-value=2.9e-18 Score=152.86 Aligned_cols=117 Identities=33% Similarity=0.587 Sum_probs=103.2
Q ss_pred cccccCCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhC
Q 006663 497 YQHAQGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAK 576 (636)
Q Consensus 497 ~~~~~~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~ 576 (636)
|++.++.+++.|++++|+|+|+|++++++++.+.+...+.+.+ +..+.+.+|+||++|++||++|+++|.++.++++++
T Consensus 1 y~~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~ 79 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIK-KRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRR 79 (117)
T ss_dssp SCEEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--H-TSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHT
T ss_pred CCeeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhccccccc-ccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHC
Confidence 4556677899999999999999999999999998765310000 123479999999999999999999999999999999
Q ss_pred CCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHH
Q 006663 577 SIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDA 614 (636)
Q Consensus 577 g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~A 614 (636)
|++++++++++++++.|+++|+.+.++++++|+|++||
T Consensus 80 g~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 80 GVQLVLVGLNPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp TCEEEEESHHHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred CCEEEEEECCHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 99999999999999999999999999999999999998
No 16
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.71 E-value=4e-17 Score=142.82 Aligned_cols=102 Identities=20% Similarity=0.305 Sum_probs=94.8
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
+.+++.+++++|+|+|+|+++|++++.+.++. ++.+.+++||++|+||||||+++|.++.++++++|++++
T Consensus 5 ~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~---------~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~ 75 (106)
T TIGR02886 5 VKGDVLIVRLSGELDHHTAERVRRKIDDAIER---------RPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVI 75 (106)
T ss_pred EECCEEEEEEecccchhhHHHHHHHHHHHHHh---------CCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEE
Confidence 45689999999999999999999999887653 246899999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCccccCCcccccCHHHHH
Q 006663 582 LINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAI 615 (636)
Q Consensus 582 l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al 615 (636)
++++++++++.|+++|+.+.+ ++|+|.++|+
T Consensus 76 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 76 VCNVSPAVKRLFELSGLFKII---RIYESEEEAL 106 (106)
T ss_pred EEeCCHHHHHHHHHhCCceEE---EEcCChHHhC
Confidence 999999999999999999999 7999999874
No 17
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.70 E-value=8.8e-17 Score=141.43 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=93.1
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
..+++.+++++|+|||+|+++|++++.+.+.+ .+.+.+|+||++|+||||||+++|.++.++++++|++++
T Consensus 7 ~~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~---------~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~ 77 (109)
T cd07041 7 VWDGVLVLPLIGDLDDERAEQLQERLLEAISR---------RRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTI 77 (109)
T ss_pred EeCCEEEEeeeeeECHHHHHHHHHHHHHHHHH---------cCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEE
Confidence 34679999999999999999999998776643 246899999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCcc-ccCCcccccCHHHHH
Q 006663 582 LINPRIGVMDKMILSKFID-VIGKDSVFLSIEDAI 615 (636)
Q Consensus 582 l~~~~~~v~~~l~~~gl~~-~~~~~~if~t~~~Al 615 (636)
++++++++++.|+++|+++ .+ ++|+|++||+
T Consensus 78 l~g~~~~v~~~l~~~gl~~~~~---~~~~t~~~Al 109 (109)
T cd07041 78 LTGIRPEVAQTLVELGIDLSGI---RTAATLQQAL 109 (109)
T ss_pred EEeCCHHHHHHHHHhCCChhhc---eeeccHHHhC
Confidence 9999999999999999988 55 8999999985
No 18
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.67 E-value=7.5e-14 Score=146.79 Aligned_cols=342 Identities=16% Similarity=0.182 Sum_probs=205.5
Q ss_pred hhHHHHHHHHHHHhchHhH--H--HHHhCCCccc---hhh----hhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhc
Q 006663 67 YDVLAGITITSLAIPQGIS--Y--AKLASIPPII---GLY----SSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQ 135 (636)
Q Consensus 67 ~D~~aGlt~~~~~iPq~~a--y--a~laglp~~~---GL~----s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~ 135 (636)
.-+.||+...++..--..+ + +.-.|+++.. .+. ++.+.++..++.- +.+++.+++..-+.++.....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~-r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRF-KTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecCchHHHHHHHhcCC
Confidence 4566777777654422222 2 3346777632 222 2333444444443 5567888765555444433332
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHH
Q 006663 136 KVPPKKDPTLYLHLVFTATFFTGIFQTALGFLR-LGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVS 214 (636)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~r-lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~ 214 (636)
. .+..+.++.+++|++.+++|+.+ ++|+.+++|+++..|+++|+++.....-++.+..
T Consensus 101 ~---------~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~------------ 159 (395)
T TIGR00843 101 I---------SLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDG------------ 159 (395)
T ss_pred C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 2 24557788899999999999999 6999999999999999999988775443332110
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCCCCCC
Q 006663 215 VLHAVFSNRKEWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLRKGIN 294 (636)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip~g~p 294 (636)
++ .++...++..++.|++. |+ ++.++++++|+++++..+..+. . .....++
T Consensus 160 ------------~p---ll~~~mll~~l~~~r~~---Pr------~avl~aLlvG~iva~~~G~~~~--~---~~~~~l~ 210 (395)
T TIGR00843 160 ------------LF---LICFSMLLCWLASKAFA---PR------YAMIAALICGIAFSFALGDMNP--T---DLDFKIA 210 (395)
T ss_pred ------------hH---HHHHHHHHHHHHHHHhc---ch------HHHHHHHHHHHHHHHHhcCCCc--c---ccccccc
Confidence 11 23333333333433322 32 2788999999999998874221 1 1112233
Q ss_pred CCCCCcCccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhccccc------CCcc
Q 006663 295 PPSIGYLNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYL------TTGP 368 (636)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p------~~~s 368 (636)
.|.|..++|++. ..+..++...++.+...-.-.-+..+..||+.+.|+-+...|++|+++++||+++ .+.-
T Consensus 211 ~p~~~~P~fs~~---a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAi 287 (395)
T TIGR00843 211 LPQFIAPDFSFA---HSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAITAAI 287 (395)
T ss_pred cceeeCCCCCHH---HHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHhHHH
Confidence 444444445432 2344445555555544332333444567899999999999999999999999999 3322
Q ss_pred cchhHHhhhcCCCCchhHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcchhhHHHH
Q 006663 369 FSKTAVNFNAGCKTAMSNVVMSFCMMLVLLF---LAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKLDFSICMA 445 (636)
Q Consensus 369 ~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~---l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v~~~ 445 (636)
+.....+.+ ++|+-.+++..|++.+++.++ +..++..+|.+..+++-=.+.++-+. ..+..-.+. ..+-.-.++
T Consensus 288 c~G~~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~-~~l~~a~~~-~~~r~~a~~ 364 (395)
T TIGR00843 288 CMGKDAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIA-GNIKIALHE-DQERDAALI 364 (395)
T ss_pred hcCcccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHhcC-cchhHHHHH
Confidence 233333344 788899999999999988877 55679999999887763333333332 223333322 222233344
Q ss_pred HHHHHh----hhh---hhhhHHHHHHH
Q 006663 446 AFLGVA----FIS---MDIGLMLSVGL 465 (636)
Q Consensus 446 t~~~~~----~~~---~~~Gi~~gv~~ 465 (636)
||+.|. +.| -.+|+++|+..
T Consensus 365 tflvtaSg~~~~gigaafWgl~~G~~~ 391 (395)
T TIGR00843 365 AFLATASGLHFLGIGSAFWGLCAGGLA 391 (395)
T ss_pred HHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 444443 333 36778777654
No 19
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.66 E-value=1.1e-13 Score=158.03 Aligned_cols=351 Identities=14% Similarity=0.109 Sum_probs=238.6
Q ss_pred hhHHHHHHHHHHHhchHhHHHHHhC------CCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCCCC
Q 006663 67 YDVLAGITITSLAIPQGISYAKLAS------IPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVPPK 140 (636)
Q Consensus 67 ~D~~aGlt~~~~~iPq~~aya~lag------lp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~ 140 (636)
+-+-|-+-..+.++.-+++|+.+.+ +...--|.++.+++++|++||+.|..++|+++.+.+....+..- ..
T Consensus 370 q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~-c~-- 446 (900)
T TIGR00834 370 QCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSF-CE-- 446 (900)
T ss_pred hhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHH-Hh--
Confidence 3445556666777788888887643 44455699999999999999999999999888777765543322 11
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCC-CCcHH------
Q 006663 141 KDPTLYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTT-KTDVV------ 213 (636)
Q Consensus 141 ~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~-~~~~~------ 213 (636)
.+..+|++....+.+.++++.++++.+...++++|+.+..-..|-.-|++..+...++.+...-.... ..++.
T Consensus 447 ~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~ 526 (900)
T TIGR00834 447 SNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVP 526 (900)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc
Confidence 12245888889999999999999999999999999999999999999999999888887765311000 00000
Q ss_pred -----HHHH-----HH-----------HhhCCCCchHHHHHHHHHHHHHHHHHHhhh--cCCccc--ccccchhhHHHHH
Q 006663 214 -----SVLH-----AV-----------FSNRKEWRWESAVIGISFLIFLQFTRYLKN--RKPKLF--WVSAMAPMVTVVV 268 (636)
Q Consensus 214 -----~~~~-----~~-----------~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~--~~~~~~--~~~~~~~li~vi~ 268 (636)
.... .. .......-..++++.+.|+.+.+.++.+++ .+++.. .+.-.+..++|++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~ 606 (900)
T TIGR00834 527 PKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILI 606 (900)
T ss_pred cccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHH
Confidence 0000 00 000011223445566666666555555432 122211 2444567788999
Q ss_pred HHHHHHHhhccccCeeeeccCCCCCCCCCCC--------cC----ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006663 269 GCLFAYFAHAEKHGIQIVGDLRKGINPPSIG--------YL----NFKSEYLTVTVKAGIITALIALAEGIAIARSFAIM 336 (636)
Q Consensus 269 ~t~~~~~~~~~~~~v~~~g~ip~g~p~~~~~--------~~----~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~ 336 (636)
.+.+.+.++.. ...- -.+|.+++ |..| .+ .+.+.....++..++.++++-|+|+-.++....++
T Consensus 607 ~t~v~~~~~~v--~~~k-l~Vp~~f~-pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~ 682 (900)
T TIGR00834 607 MVLVDIFIGDT--YTQK-LSVPSGLK-VTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK 682 (900)
T ss_pred HHHHHHHhccC--cccc-cCCCCCcC-CCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc
Confidence 99888876521 1100 12455543 2222 11 12333456678889999999999988777665554
Q ss_pred cC---cccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhc----------C-------C-CCchhHHHHHHHHHH
Q 006663 337 QN---EQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNA----------G-------C-KTAMSNVVMSFCMML 395 (636)
Q Consensus 337 ~~---~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~----------G-------a-~T~la~i~~~~~~ll 395 (636)
.+ +..-.+-+++..|+.|.++|++|-.+.+++..+|..+.++ | + .+|+++++.++++.+
T Consensus 683 e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLigl 762 (900)
T TIGR00834 683 ERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGL 762 (900)
T ss_pred cccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHH
Confidence 32 2233577899999999999999999999998888776652 2 1 468999999987766
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhcCC
Q 006663 396 VLLFLAPLFSYTPLVALSAIIMSAMFGLIN 425 (636)
Q Consensus 396 ~~~~l~~ll~~IP~~vLa~ili~~~~~li~ 425 (636)
.+ +..|++.+||++||.|+.+++|+.-+.
T Consensus 763 sv-~~~PvL~~IP~aVL~GvFlYMGv~SL~ 791 (900)
T TIGR00834 763 SI-LMEPILKRIPLAVLFGIFLYMGVTSLS 791 (900)
T ss_pred HH-HHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 55 688899999999999999999998764
No 20
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.61 E-value=2.3e-15 Score=130.14 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=84.7
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
+.+++.+++++|+|+|+|+++|++++.+.+.+ ++.+.+|+||++|+||||||+++|.++.++++++|+++.
T Consensus 5 ~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~---------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~ 75 (100)
T cd06844 5 KVDDYWVVRLEGELDHHSVEQFKEELLHNITN---------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFV 75 (100)
T ss_pred EECCEEEEEEEEEecHhhHHHHHHHHHHHHHh---------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEE
Confidence 45789999999999999999999999876543 347899999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCcccc
Q 006663 582 LINPRIGVMDKMILSKFIDVI 602 (636)
Q Consensus 582 l~~~~~~v~~~l~~~gl~~~~ 602 (636)
++++++++++.|+++|+.+.+
T Consensus 76 l~~~~~~v~~~l~~~gl~~~~ 96 (100)
T cd06844 76 LTGISPAVRITLTESGLDKGX 96 (100)
T ss_pred EECCCHHHHHHHHHhCchhhh
Confidence 999999999999999998765
No 21
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.56 E-value=7.7e-12 Score=139.27 Aligned_cols=338 Identities=13% Similarity=0.171 Sum_probs=227.8
Q ss_pred HhchHhHHHHHhC------CCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCCCCCChhhHHHHHHH
Q 006663 79 AIPQGISYAKLAS------IPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVPPKKDPTLYLHLVFT 152 (636)
Q Consensus 79 ~iPq~~aya~lag------lp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~~~~~~~~~~~~~ 152 (636)
++--+++|+.+-| +...--|.+..+++++|++||+-|..++|+++.+.++-..+.. .. .+++.+|++....
T Consensus 373 ~l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~-f~--~~~~~dyl~~r~w 449 (876)
T KOG1172|consen 373 CLLPAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFK-FC--KDNGLDYLAFRAW 449 (876)
T ss_pred hhhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHH-HH--hhCCCchhhHHHH
Confidence 3334566665533 2233468999999999999999999999988887775543322 21 1233568888899
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHH----HHH---HHHHhhC--
Q 006663 153 ATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVV----SVL---HAVFSNR-- 223 (636)
Q Consensus 153 ~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~----~~~---~~~~~~~-- 223 (636)
+++.+.++.+++..+....+++|+.+..-..|-.-|++..+...++.+.++...... ++. ... ..-..+.
T Consensus 450 VglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 528 (876)
T KOG1172|consen 450 VGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPI-EFDSKPNPGADWSGPECESVSG 528 (876)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cccccCCcccccccccccccCc
Confidence 999999999999999999999999999999999999999999999977765321000 000 000 0000000
Q ss_pred ----CCCch----HHHHHHHHHHHHHHHHHHhhh--cCCcc--cccccchhhHHHHHHHHHHHHhhc-cccCeeeeccCC
Q 006663 224 ----KEWRW----ESAVIGISFLIFLQFTRYLKN--RKPKL--FWVSAMAPMVTVVVGCLFAYFAHA-EKHGIQIVGDLR 290 (636)
Q Consensus 224 ----~~~~~----~~~~lg~~~l~~ll~~~~~~~--~~~~~--~~~~~~~~li~vi~~t~~~~~~~~-~~~~v~~~g~ip 290 (636)
..+.+ ..+++.+.++.+-+.+|.+++ .++++ .++.-.+..++|++.+.+.+..+. ...++. .|
T Consensus 529 ~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~----vp 604 (876)
T KOG1172|consen 529 TLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLP----VP 604 (876)
T ss_pred ccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccc----cC
Confidence 00112 233444444444444443321 12221 123445667788888888887762 222222 23
Q ss_pred CCCCCCC-----C---CcCccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---ccCchhHHHHHhHHHhHhhh
Q 006663 291 KGINPPS-----I---GYLNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNE---QIDGNKEMIAFGLMNIVGSF 359 (636)
Q Consensus 291 ~g~p~~~-----~---~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~---~~~~n~eL~a~G~aNi~~sl 359 (636)
.++|++. | |.....+..+..++..++.++++-++|+-.++....++.+. ..-..-+|+-+|+.|+++|+
T Consensus 605 ~~~~~t~~~~rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsl 684 (876)
T KOG1172|consen 605 SVFPPTWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSL 684 (876)
T ss_pred cCCCCCCcccCCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHh
Confidence 3333221 1 11123445667788889999999999998777766554332 23456789999999999999
Q ss_pred cccccCCcccchhHHhhhc-----------------CC-CCchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 006663 360 TSCYLTTGPFSKTAVNFNA-----------------GC-KTAMSNVVMSFCMMLVLLFLAPLFSYTPLVALSAIIMSAMF 421 (636)
Q Consensus 360 fGg~p~~~s~srS~~~~~~-----------------Ga-~T~la~i~~~~~~ll~~~~l~~ll~~IP~~vLa~ili~~~~ 421 (636)
+|-.+.+++..+|..+.++ |+ ..|.+|++.++++. +..++.|++..||++||-|+-.++|+
T Consensus 685 lGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvg-ls~~~~pvL~~IP~~VL~GvFlYMgv 763 (876)
T KOG1172|consen 685 LGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVG-LSVLLLPVLKLIPMPVLYGVFLYMGV 763 (876)
T ss_pred cCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 9999999999999887663 22 35789999998888 44478999999999999999999999
Q ss_pred hcCC
Q 006663 422 GLIN 425 (636)
Q Consensus 422 ~li~ 425 (636)
.-+.
T Consensus 764 ~SL~ 767 (876)
T KOG1172|consen 764 SSLP 767 (876)
T ss_pred ccCC
Confidence 8764
No 22
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.53 E-value=1e-11 Score=128.27 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCCC
Q 006663 147 LHLVFTATFFTGIFQTALGFLR-LGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRKE 225 (636)
Q Consensus 147 ~~~~~~~~~l~Gv~~lllg~~r-lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 225 (636)
+.-+.++-+++|++.++.|+.+ ++|+++.+|.++..++++|+-+-....-++.+-.
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~----------------------- 143 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQA----------------------- 143 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 4556778889999999999999 6999999999999999999988776554442211
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCCCCCCCCCCCcCccCh
Q 006663 226 WRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLRKGINPPSIGYLNFKS 305 (636)
Q Consensus 226 ~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip~g~p~~~~~~~~~~~ 305 (636)
++ .+....++..++.|++.+|+ +.+.+++.+.++++..+.-+ . ..++..++.|.+-.|+|++
T Consensus 144 -~P---~l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~---~~~~~~~~~p~~~~P~Fs~ 205 (378)
T PF03594_consen 144 -DP---LLVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--P---SALQLSLAHPVFTTPEFSW 205 (378)
T ss_pred -HH---HHHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--c---cccccccceeEEECCcccH
Confidence 11 22333344445556665554 45677788888777665311 1 1222345556665566664
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhc--C---C
Q 006663 306 EYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNA--G---C 380 (636)
Q Consensus 306 ~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~--G---a 380 (636)
. ..+..++.+.++.+...-.-+-++-+.+||+.+.|+-+...|++|++.+.|||.+.+-+-...+++..- + .
T Consensus 206 ~---a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~dp~ 282 (378)
T PF03594_consen 206 S---ALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHPDPS 282 (378)
T ss_pred H---HHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCCCcc
Confidence 3 455566777777777655555566677899999999999999999999999999988777777766553 3 2
Q ss_pred CCchhHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcchhhHHHHHHHHHh----hh
Q 006663 381 KTAMSNVVMSFCMMLVLLF---LAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKLDFSICMAAFLGVA----FI 453 (636)
Q Consensus 381 ~T~la~i~~~~~~ll~~~~---l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v~~~t~~~~~----~~ 453 (636)
|--.+++.+|++.+++.++ +..++..+|++.++.+-=.+.++-+ ...+..-++.++ +-.-.++||+.|. +.
T Consensus 283 rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l-~~sl~~A~~~~~-~r~aAlvtFlvtaSGisl~ 360 (378)
T PF03594_consen 283 RRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTL-GGSLQTAFSDEK-YREAALVTFLVTASGISLL 360 (378)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHhcCcc-hhHHHHHHHHHHHcCCCcc
Confidence 3347889999998888887 5567899999888765333333333 233444444322 1223334444333 33
Q ss_pred h---hhhhHHHHHHHHH
Q 006663 454 S---MDIGLMLSVGLAL 467 (636)
Q Consensus 454 ~---~~~Gi~~gv~~s~ 467 (636)
| -.+|+++|++..+
T Consensus 361 gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 361 GIGAAFWGLVAGLLVHL 377 (378)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 3 3678888876643
No 23
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.50 E-value=6.5e-14 Score=122.84 Aligned_cols=100 Identities=15% Similarity=0.276 Sum_probs=91.9
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
..+++.+++++|+++|.|++.|++.+.+...+ ++.+.+++||++++++||+|+++|.++.++++++|+++.
T Consensus 9 ~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~---------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~ 79 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHTAPLLREKVTPAAER---------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLV 79 (108)
T ss_pred EECCEEEEEEecccccccHHHHHHHHHHHHHh---------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999999887653 247899999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCccccCCcccccCHHH
Q 006663 582 LINPRIGVMDKMILSKFIDVIGKDSVFLSIED 613 (636)
Q Consensus 582 l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~ 613 (636)
++++++++.+.|+++|+.+.+ ++|+|++|
T Consensus 80 l~~~~~~~~~~l~~~~l~~~~---~i~~~~~~ 108 (108)
T TIGR00377 80 LVSVSPRVARLLDITGLLRII---PIYPTVEE 108 (108)
T ss_pred EEeCCHHHHHHHHHhChhhee---ccCCCCCC
Confidence 999999999999999999998 78988764
No 24
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.44 E-value=1.1e-12 Score=114.62 Aligned_cols=101 Identities=29% Similarity=0.578 Sum_probs=89.1
Q ss_pred cCCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEE
Q 006663 501 QGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKM 580 (636)
Q Consensus 501 ~~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l 580 (636)
...+++.+++++|+++|.|++.+++++.+..+.. +..+.+++||++++++|++|+++|.++.++++++|+++
T Consensus 5 ~~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~--------~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~ 76 (107)
T cd07042 5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDED--------PPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVEL 76 (107)
T ss_pred ccCCCEEEEEecCceEeehHHHHHHHHHHHhccC--------CCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEE
Confidence 4456899999999999999999999998765432 22479999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhcCCccccCCccccc
Q 006663 581 KLINPRIGVMDKMILSKFIDVIGKDSVFL 609 (636)
Q Consensus 581 ~l~~~~~~v~~~l~~~gl~~~~~~~~if~ 609 (636)
.++++++++++.++.+|+.+.++.++.+.
T Consensus 77 ~l~~~~~~~~~~l~~~g~~~~~~~~~~~~ 105 (107)
T cd07042 77 YLAGLNPQVRELLERAGLLDEIGEENFFP 105 (107)
T ss_pred EEecCCHHHHHHHHHcCcHHHhCccccee
Confidence 99999999999999999999886655544
No 25
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.32 E-value=8.8e-12 Score=107.12 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=82.8
Q ss_pred CCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEE
Q 006663 503 FPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKL 582 (636)
Q Consensus 503 ~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l 582 (636)
.+++.+++++|+++|.|++.+++.+.+..++ +.+.+++|+++++++|++|+++|.++.++++++|+++.+
T Consensus 6 ~~~~~ii~l~G~l~~~~~~~~~~~~~~~~~~----------~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i 75 (99)
T cd07043 6 RGGVLVVRLSGELDAATAPELREALEELLAE----------GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVL 75 (99)
T ss_pred ECCEEEEEEeceecccchHHHHHHHHHHHHc----------CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEE
Confidence 3478999999999999999999998876543 258999999999999999999999999999999999999
Q ss_pred EcCChhHHHHHHhcCCcccc
Q 006663 583 INPRIGVMDKMILSKFIDVI 602 (636)
Q Consensus 583 ~~~~~~v~~~l~~~gl~~~~ 602 (636)
+++++++++.|+++|+.+.+
T Consensus 76 ~~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 76 VNVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred EcCCHHHHHHHHHhCcceee
Confidence 99999999999999998876
No 26
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.32 E-value=1e-11 Score=110.51 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=87.5
Q ss_pred EEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC
Q 006663 507 LILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR 586 (636)
Q Consensus 507 ~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~ 586 (636)
.++.+.|+||..++..+++.+.+.+... ..+.+++|+++|+|+||+|++.|....+.++.+|+++.+++++
T Consensus 15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~~---------~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~ 85 (117)
T COG1366 15 LVLPLIGELDAARAPALKETLLEVIAAS---------GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQ 85 (117)
T ss_pred EEEEeeEEEchHHHHHHHHHHHHHHhcC---------CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 7999999999999999999999776553 3566999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCccccCCcccccCHHHHHH
Q 006663 587 IGVMDKMILSKFIDVIGKDSVFLSIEDAID 616 (636)
Q Consensus 587 ~~v~~~l~~~gl~~~~~~~~if~t~~~Al~ 616 (636)
|++.+.++.+|+.+.+ .++++.+++..
T Consensus 86 p~v~~~~~~~gl~~~~---~~~~~~~~~~~ 112 (117)
T COG1366 86 PEVARTLELTGLDKSF---IITPTELEAAL 112 (117)
T ss_pred HHHHHHHHHhCchhhc---ccccchHHHHH
Confidence 9999999999999877 56666555544
No 27
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.22 E-value=1.5e-09 Score=114.22 Aligned_cols=305 Identities=14% Similarity=0.165 Sum_probs=188.3
Q ss_pred chhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhh--ccCCCC---C-Chhh---HHHHHHHHHHHHHHHHHHHHH
Q 006663 96 IGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIG--QKVPPK---K-DPTL---YLHLVFTATFFTGIFQTALGF 166 (636)
Q Consensus 96 ~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~--~~~~~~---~-~~~~---~~~~~~~~~~l~Gv~~lllg~ 166 (636)
.-++++.+..++...||++.++..||+-+.-.-+-+++. +..... + +++. .++...++.++++++|.++|+
T Consensus 54 T~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~ 133 (510)
T KOG1292|consen 54 TIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGF 133 (510)
T ss_pred HHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 357778888999999999999999986554443334444 221111 1 1111 244566888999999999999
Q ss_pred hhh-hhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHH-
Q 006663 167 LRL-GILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRKEWRWESAVIGISFLIFLQFT- 244 (636)
Q Consensus 167 ~rl-g~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~ll~~- 244 (636)
.++ |++.||+.+-.+.=.++-+|+.+.....+.+ .+ +| -+|+..+..+++.
T Consensus 134 sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~-------------------~~-----~w---eI~l~~~llli~fs 186 (510)
T KOG1292|consen 134 SGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKL-------------------GK-----HW---EISLPEILLLILFS 186 (510)
T ss_pred hhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhh-------------------hh-----he---eecHHHHHHHHHHH
Confidence 996 8899999999999888888877653333211 01 11 1222222222222
Q ss_pred HH--hhhcCC---cccccccchhhHHHHHHHHHHHHhhc---ccc-----Ce----e---eeccCC-CCCCC-CCCCcCc
Q 006663 245 RY--LKNRKP---KLFWVSAMAPMVTVVVGCLFAYFAHA---EKH-----GI----Q---IVGDLR-KGINP-PSIGYLN 302 (636)
Q Consensus 245 ~~--~~~~~~---~~~~~~~~~~li~vi~~t~~~~~~~~---~~~-----~v----~---~~g~ip-~g~p~-~~~~~~~ 302 (636)
.+ ++++.. +...+.-.+.++++.+..++++++-. ..+ +. + ....-| -..|. .+|..+.
T Consensus 187 qy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~ 266 (510)
T KOG1292|consen 187 QYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPT 266 (510)
T ss_pred HhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCCCc
Confidence 22 212111 11111222456777777777777632 111 00 0 111111 01232 2455556
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CcccCchhHHHHHhHHHhHhhhcccccCCcccc-hhHHhhh
Q 006663 303 FKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQ----NEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFS-KTAVNFN 377 (636)
Q Consensus 303 ~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~----~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~s-rS~~~~~ 377 (636)
|+......+ ++.++++++|+++.-.+.++.. .-....||....+|++.+++|+||+-.++..++ +.++..-
T Consensus 267 f~~~~~f~m----~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~v 342 (510)
T KOG1292|consen 267 FSAGLVFAM----MAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGV 342 (510)
T ss_pred ccHHHHHHH----HHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEee
Confidence 665444444 3446666777766544444433 333456999999999999999999765554444 4445555
Q ss_pred cCCCCchhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHH
Q 006663 378 AGCKTAMSNVVMSFCMMLVLLF--LAPLFSYTPLVALSAIIMSAMFGLINYEEAILL 432 (636)
Q Consensus 378 ~Ga~T~la~i~~~~~~ll~~~~--l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l 432 (636)
+..-||.+--++|.++++...+ ++.+++.||.++.||+.- .++.|+..-++..+
T Consensus 343 TKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c-~~~~mv~avgLSnL 398 (510)
T KOG1292|consen 343 TKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLC-ILFGMVGAVGLSNL 398 (510)
T ss_pred eeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH-HHHHHHHHHhhhhh
Confidence 8888999999999999988877 899999999999999775 66666644444444
No 28
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.19 E-value=4.1e-12 Score=138.14 Aligned_cols=349 Identities=12% Similarity=0.179 Sum_probs=28.2
Q ss_pred HHHHHHHHHhchHhHHHHHhC------CCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCCCCCChh
Q 006663 71 AGITITSLAIPQGISYAKLAS------IPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVPPKKDPT 144 (636)
Q Consensus 71 aGlt~~~~~iPq~~aya~lag------lp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~~~~~ 144 (636)
|-+-..+..+.-+++|+.+-+ +...-.+.++.+++++|++||+.|..+.|+++.+.+...... +..+ +..-
T Consensus 38 ~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~-~~~~--~~~~ 114 (510)
T PF00955_consen 38 ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILY-KFCK--SYGL 114 (510)
T ss_dssp HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc--cccc
Confidence 444555666677777776533 333446889999999999999999999999988877554332 2221 1223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCcccc-CCCCcH-----------
Q 006663 145 LYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHF-TTKTDV----------- 212 (636)
Q Consensus 145 ~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~-~~~~~~----------- 212 (636)
+|++.-....+.++++.++++.+...++++|+.+..-..|-.-+++..+...++.+...... +-..++
T Consensus 115 ~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~ 194 (510)
T PF00955_consen 115 DFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPP 194 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57777788999999999999999999999999999999999999999999988887654210 000000
Q ss_pred ---------------------HHHHHHHHhhC------------CCCch----HHHHHHHHHHHHHHHHHHhhh--cCCc
Q 006663 213 ---------------------VSVLHAVFSNR------------KEWRW----ESAVIGISFLIFLQFTRYLKN--RKPK 253 (636)
Q Consensus 213 ---------------------~~~~~~~~~~~------------~~~~~----~~~~lg~~~l~~ll~~~~~~~--~~~~ 253 (636)
.....+-..+. ....+ .++++.+.++.+...++.+++ .+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~ 274 (510)
T PF00955_consen 195 ENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPR 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccH
Confidence 00000000000 01111 233444444444444433321 1222
Q ss_pred c--cccccchhhHHHHHHHHHHHHhhccccCeeeeccCCCCCCCC-----CC--CcC-ccChhhHHHHHHHHHHHHHHHH
Q 006663 254 L--FWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLRKGINPP-----SI--GYL-NFKSEYLTVTVKAGIITALIAL 323 (636)
Q Consensus 254 ~--~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip~g~p~~-----~~--~~~-~~~~~~~~~~~~~~~~~~iv~~ 323 (636)
. ..+...+..+++++.+.+.+.++.+.... ++|.++.+. .| +.+ +..+.....++..++.++++-+
T Consensus 275 ~vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~F 350 (510)
T PF00955_consen 275 WVREIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTILFF 350 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 12444566778888888877665321111 234433211 01 111 1122233445666788888889
Q ss_pred HHHHHHHHHHHhhcC---cccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcCC------------------CC
Q 006663 324 AEGIAIARSFAIMQN---EQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGC------------------KT 382 (636)
Q Consensus 324 ~~~~~~~~~~~~~~~---~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga------------------~T 382 (636)
+|+-.++....++++ +..-.+-+|...|+.|.++|++|-.+.+++..+|..+.++=+ .+
T Consensus 351 ~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~Eq 430 (510)
T PF00955_consen 351 MDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQ 430 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEe
Confidence 987666555444322 223345679999999999999999888988988887765321 46
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCHH
Q 006663 383 AMSNVVMSFCMMLVLLFLAPLFSYTPLVALSAIIMSAMFGLINYE 427 (636)
Q Consensus 383 ~la~i~~~~~~ll~~~~l~~ll~~IP~~vLa~ili~~~~~li~~~ 427 (636)
|+++++.++++.+.+ ++.|++.+||+|||.|+.+++|+.-++..
T Consensus 431 RvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~gn 474 (510)
T PF00955_consen 431 RVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLSGN 474 (510)
T ss_dssp ---------------------------------------------
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeecCc
Confidence 889999988776655 67899999999999999999998877443
No 29
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.12 E-value=1.5e-08 Score=102.65 Aligned_cols=275 Identities=16% Similarity=0.145 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCCC
Q 006663 147 LHLVFTATFFTGIFQTALGFLR-LGILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRKE 225 (636)
Q Consensus 147 ~~~~~~~~~l~Gv~~lllg~~r-lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 225 (636)
..-+.++-+.+|+..++.|++| ++|+++-+|+++-.++++|+=+-.....++..-
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~------------------------ 157 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALP------------------------ 157 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccC------------------------
Confidence 4456778888999999999999 799999999999999999998777665554211
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCCCCCCCCCCCcCccCh
Q 006663 226 WRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLRKGINPPSIGYLNFKS 305 (636)
Q Consensus 226 ~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip~g~p~~~~~~~~~~~ 305 (636)
.++ .+.+-.+...++.|.+.+|+ +...++++|..++...|.-.. +..+..+..|.|-.++|+.
T Consensus 158 ~~p---~l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-----~~~~~~~~~p~~v~P~Fs~ 220 (402)
T COG3135 158 TQP---LLVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-----ALVALEISTPTWVTPEFSF 220 (402)
T ss_pred CCh---HHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-----cccccccCcceeeCCcccH
Confidence 111 22222233344456665554 567788888888877764221 1112223345555556664
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhc-----CC
Q 006663 306 EYLTVTVKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNA-----GC 380 (636)
Q Consensus 306 ~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~-----Ga 380 (636)
. .++..++.+.++.+...=.-+-++-+.+||+.+++--+.+.|+..+.++.||++..+-.-..-++...- -.
T Consensus 221 ~---A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD~~ 297 (402)
T COG3135 221 A---AMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPDPA 297 (402)
T ss_pred H---HHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCChH
Confidence 3 455556667777665543333344456899999999999999999999999999876433333332221 23
Q ss_pred CCchhHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHhhcCC--HHHHHHHhc-CCcchh--hHHHHHHHHHhh
Q 006663 381 KTAMSNVVMSFCMMLVLLFLA---PLFSYTPLVALSAIIMSAMFGLIN--YEEAILLFK-VDKLDF--SICMAAFLGVAF 452 (636)
Q Consensus 381 ~T~la~i~~~~~~ll~~~~l~---~ll~~IP~~vLa~ili~~~~~li~--~~~~~~l~~-~~~~d~--~v~~~t~~~~~~ 452 (636)
|.-.+++++|+.-+++.+|.+ .++..+|++.+..+ +|+-|+. .+.+..-.+ .+.+|. +.+++|.-..-+
T Consensus 298 rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l---AGLALlg~~~~~l~~A~~~~~~R~aAlvtF~VTaSG~tl 374 (402)
T COG3135 298 RRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL---AGLALLGTLGNSLQAALKDEREREAALVTFLVTASGLTL 374 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH---HHHHHHHHHHHHHHHHhcCcccchhhhhheeehhcccee
Confidence 555899999999999888844 56889999877654 4444441 122333333 222332 223333333333
Q ss_pred hh---hhhhHHHHHHHHHH
Q 006663 453 IS---MDIGLMLSVGLALL 468 (636)
Q Consensus 453 ~~---~~~Gi~~gv~~s~~ 468 (636)
+| -.+|++.|.+...+
T Consensus 375 ~GIgaafWGLvaG~~~~~L 393 (402)
T COG3135 375 FGIGAAFWGLVAGLLVLAL 393 (402)
T ss_pred ecccHHHHHHHHHHHHHHH
Confidence 43 35677777655333
No 30
>PF13466 STAS_2: STAS domain
Probab=99.12 E-value=2.4e-10 Score=94.38 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=74.4
Q ss_pred EEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChh
Q 006663 509 LQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIG 588 (636)
Q Consensus 509 vrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~ 588 (636)
+++.|++++.+++.+++.+.++++. + +.+++|+++|+++||+|++.|....+.++++|.++.+.++++.
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~~----------~-~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~~ 69 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLAS----------G-RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSPA 69 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHcC----------C-CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 4789999999999999999987632 2 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCc
Q 006663 589 VMDKMILSKFI 599 (636)
Q Consensus 589 v~~~l~~~gl~ 599 (636)
+++.++.+|++
T Consensus 70 ~~~ll~~~gld 80 (80)
T PF13466_consen 70 LRRLLELLGLD 80 (80)
T ss_pred HHHHHHHhCcC
Confidence 99999999974
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.97 E-value=0.0033 Score=64.64 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-hhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHHHHHhhCCCCchH
Q 006663 151 FTATFFTGIFQTALGFLRLGI-LVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLHAVFSNRKEWRWE 229 (636)
Q Consensus 151 ~~~~~l~Gv~~lllg~~rlg~-l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (636)
+...++.|++-++++.+|.|. +++.-++-|-+|.+.=.|+.=..+|++++..... .++ ..+.
T Consensus 145 Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~----------------~~~-~~~i 207 (492)
T PF11840_consen 145 LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWAN----------------GFD-MGYI 207 (492)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHh----------------ccC-ccHH
Confidence 346788999999999999765 8899999999998888888888889887664321 111 1222
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCCCCCCCC---CCCc----Cc
Q 006663 230 SAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLRKGINPP---SIGY----LN 302 (636)
Q Consensus 230 ~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip~g~p~~---~~~~----~~ 302 (636)
.+++-.+++++.....+++|||- +.-+.-+++.++++.+|.. ++... +.|+|.. .|.. +.
T Consensus 208 ~fvvi~~tiv~Ya~L~k~~KrWL--------aIPl~~~~a~~~a~~lGa~---f~f~t--~pglp~lnP~YWWge~tGw~ 274 (492)
T PF11840_consen 208 AFVVIIVTIVLYAYLAKIEKRWL--------AIPLCSILAGVLAFALGAP---FEFTT--EPGLPNLNPMYWWGEETGWQ 274 (492)
T ss_pred HHHHHHHHHHHHHHHHHhccchh--------hhhHHHHHHHHHHHHcCCC---ceeec--CCCCCCCCCcccccCCcccc
Confidence 33333444444444455556553 2223444555566766642 22221 2233211 1110 00
Q ss_pred cC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCcccCchhHHHHHhHHHhHhhhcccccCCcccchhH
Q 006663 303 FK---SEYLTVTVKAGIITALIALAEGIAIARSFAIM------QNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTA 373 (636)
Q Consensus 303 ~~---~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~------~~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~ 373 (636)
+. ..++...++.++.....=.-|.++- +.+.+. ++...|.|+.+....+=|++++.+||--.++|-..-.
T Consensus 275 LglP~~~hfiav~PFAiLAVaMWSpDflgh-rvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTym 353 (492)
T PF11840_consen 275 LGLPTLEHFIAVLPFAILAVAMWSPDFLGH-RVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGTYM 353 (492)
T ss_pred cCCCcHHHHHHhccHHHHHHHHhCchHHHH-HHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccchhhh
Confidence 11 1123333333221111111122221 223321 2234688999999999999999999877554443333
Q ss_pred Hhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006663 374 VNFN-AGCKTAMSNVVMSFCMMLVLLFLAPLFSYTPLVALSAIIM 417 (636)
Q Consensus 374 ~~~~-~Ga~T~la~i~~~~~~ll~~~~l~~ll~~IP~~vLa~ili 417 (636)
+-.. +.---|-.++.+|++++++.++.-|.=-.+=.|++...++
T Consensus 354 IPaaIaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALl 398 (492)
T PF11840_consen 354 IPAAIAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALL 398 (492)
T ss_pred hhHHHhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHH
Confidence 3222 2233456788899999988888766422232345555555
No 32
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=97.71 E-value=0.00016 Score=60.24 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=69.2
Q ss_pred EEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh
Q 006663 508 ILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI 587 (636)
Q Consensus 508 ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~ 587 (636)
.+.+.|+|+=.+...+-++..+.. +....+-+|+++|.-+||+|+..|.++.+.++++|..+.+.++++
T Consensus 13 tL~LsGeL~r~tl~~lw~~r~~~~-----------~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p~ 81 (99)
T COG3113 13 TLVLSGELDRDTLLPLWSQREAQL-----------KQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVPE 81 (99)
T ss_pred eEEEeccccHHHHHHHHHHHHHHc-----------cccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCcH
Confidence 467889988665555444333321 234789999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCcccc
Q 006663 588 GVMDKMILSKFIDVI 602 (636)
Q Consensus 588 ~v~~~l~~~gl~~~~ 602 (636)
+++...+..|+.+.+
T Consensus 82 ~L~tLa~Ly~l~~~l 96 (99)
T COG3113 82 QLRTLAELYNLSDWL 96 (99)
T ss_pred HHHHHHHHhCcHhhh
Confidence 999999999987654
No 33
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=93.78 E-value=0.045 Score=47.49 Aligned_cols=105 Identities=10% Similarity=-0.042 Sum_probs=67.3
Q ss_pred cEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEcc-CCCccChHHHHHHHHHHHHHHhCCCEEEEE
Q 006663 505 GILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLS-GVSTIDMTGIAAFREILRILEAKSIKMKLI 583 (636)
Q Consensus 505 ~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s-~V~~iDssgl~~L~~l~~~~~~~g~~l~l~ 583 (636)
++..++++|.++-....++.+.+.+.++++ +.-.+.+|++ .+..++..+.....++.....++=.++.++
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~~~---------~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~AvV 71 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIADH---------GKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAVV 71 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHTTS---------SSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEEE
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHhcC---------CceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEEE
Confidence 467889999999888888888888876542 3578999999 887777766544443332211222477888
Q ss_pred cCChhHHHHHHhcCCccccCCcccc--cCHHHHHHHHH
Q 006663 584 NPRIGVMDKMILSKFIDVIGKDSVF--LSIEDAIDACR 619 (636)
Q Consensus 584 ~~~~~v~~~l~~~gl~~~~~~~~if--~t~~~Al~~~~ 619 (636)
+.++-.+...+..+.. .-.+.++| .+.+||.+|++
T Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~A~~WL~ 108 (109)
T PF11964_consen 72 GDSEWIRMIANFFAAF-PPIEVRYFPPDEEEEALAWLR 108 (109)
T ss_dssp -SSCCCHHHHHHHHHH--SSEEEEE--SSHHHHHHHHC
T ss_pred ECcHHHHHHHHHHHhc-CCCceEEECCCCHHHHHHHHc
Confidence 8776555444333322 11223899 99999999975
No 34
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=93.49 E-value=3.6 Score=46.89 Aligned_cols=111 Identities=9% Similarity=0.084 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhh-------cCC
Q 006663 308 LTVTVKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFN-------AGC 380 (636)
Q Consensus 308 ~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~-------~Ga 380 (636)
+..-+..++..+++.+-++++.+... ..++...|.+-.+..++.++||+.|-...-..++.... .|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~la------glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAILA------GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHc------CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 33445556777888888888776532 34677779999999999999999986655444433222 222
Q ss_pred CCc----------hhHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhhcC
Q 006663 381 KTA----------MSNVVMSFCMMLVLLF-LAPLFSYTPLVALSAIIMSAMFGLI 424 (636)
Q Consensus 381 ~T~----------la~i~~~~~~ll~~~~-l~~ll~~IP~~vLa~ili~~~~~li 424 (636)
... ..++++|++.+++.++ ++.+..++|.+++.|.+--+++.++
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 222 6677888888887777 8899999999999998876666554
No 35
>PRK10720 uracil transporter; Provisional
Probab=93.29 E-value=0.7 Score=50.63 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=48.7
Q ss_pred HHHHHhHHHhHhhhcccccCCcccchhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhhhhH
Q 006663 346 EMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLFLAPLFSYTPL 409 (636)
Q Consensus 346 eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~l~~ll~~IP~ 409 (636)
++...=.++=++++++++-++...+-++-|...+++||.++.+...+-..++.+ +..+|+
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~----lg~~pk 320 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAIL----LSCVGK 320 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHHH----HHHHHH
Confidence 567778899999999999999899999999999999999999988755555433 345555
No 36
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=92.87 E-value=3.1 Score=45.24 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=66.1
Q ss_pred HHHHHHHhchHhH----HHHHhCCCc-----cchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCCCCCCh
Q 006663 73 ITITSLAIPQGIS----YAKLASIPP-----IIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVPPKKDP 143 (636)
Q Consensus 73 lt~~~~~iPq~~a----ya~laglp~-----~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~~~~ 143 (636)
++.+++.+-++++ .+...|-++ ..++.+-.+++++.++||+.+.-. .+..+...... +. .
T Consensus 225 ~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~---~~~~~~~~~~t--g~-----~- 293 (406)
T TIGR03173 225 IIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTS---FSQNVGLVQLT--GV-----K- 293 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcc---hhhhHHHHHHh--CC-----C-
Confidence 3455555555554 344566432 368999999999999999877432 22222111110 10 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhccchhHHHHHhhHHHHHHHHhhhh
Q 006663 144 TLYLHLVFTATFFTGIFQTALGFL-RLGILVDFLSHSTITGFMGGTAIIICLQQLK 198 (636)
Q Consensus 144 ~~~~~~~~~~~~l~Gv~~lllg~~-rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~ 198 (636)
.. .....+|++.++++++ +++.++.++|.||++|.+...=-.+....++
T Consensus 294 sr------~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~ 343 (406)
T TIGR03173 294 SR------YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIR 343 (406)
T ss_pred ch------HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01 2346678888888887 5889999999999999554333333334444
No 37
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=92.09 E-value=2.9 Score=47.28 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcCC------CC---
Q 006663 312 VKAGIITALIALAEGIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGC------KT--- 382 (636)
Q Consensus 312 ~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga------~T--- 382 (636)
+..++..+++.+=++++.++. .| .++...|.+-=++-++-++|||.|.-.+-..++......+ .+
T Consensus 25 l~AGltva~valP~ama~a~~----aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~ 98 (554)
T COG0659 25 LLAGLTVAAVALPLAMAFAIA----AG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA 98 (554)
T ss_pred HHHHHHHHHHHhHHHHHHHHH----cC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHH
Confidence 344566677777777766552 23 7899999999999999999999987644433333222111 12
Q ss_pred --chhHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhhcC
Q 006663 383 --AMSNVVMSFCMMLVLLF-LAPLFSYTPLVALSAIIMSAMFGLI 424 (636)
Q Consensus 383 --~la~i~~~~~~ll~~~~-l~~ll~~IP~~vLa~ili~~~~~li 424 (636)
-.+.+.+|++.+++.++ ++.+..++|.+|+.|.+--+++.++
T Consensus 99 ~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~ 143 (554)
T COG0659 99 LAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII 143 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 24556667777777666 8999999999999998776665554
No 38
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=92.04 E-value=0.34 Score=41.60 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=60.6
Q ss_pred EEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----hhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHh
Q 006663 548 VLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR-----IGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 548 vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
+++|+.+|-+-+...+.-=.+..+.++++|.++++..-+ .+..+.|+..|+. +.+++++.+-..+.+++++..
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~~ 78 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEHK 78 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHHT
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhcC
Confidence 589999999999888888899999999999999997654 4788999999986 455799999999988888754
Q ss_pred cc
Q 006663 623 QK 624 (636)
Q Consensus 623 ~~ 624 (636)
..
T Consensus 79 ~~ 80 (101)
T PF13344_consen 79 GG 80 (101)
T ss_dssp TS
T ss_pred CC
Confidence 33
No 39
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=91.64 E-value=2.9 Score=45.65 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhchHhH----HHHHhCCCc------cchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccC
Q 006663 68 DVLAGITITSLAIPQGIS----YAKLASIPP------IIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKV 137 (636)
Q Consensus 68 D~~aGlt~~~~~iPq~~a----ya~laglp~------~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~ 137 (636)
.+..=+..+++.+-++++ .+..+|.++ ..++.+-.+++++.++||+.+.-.... .+-+. ..
T Consensus 235 ~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~se---n~g~~----~~-- 305 (415)
T TIGR00801 235 AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQ---NIGVI----AL-- 305 (415)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhh---hheee----ee--
Confidence 344445555666666554 445677532 369999999999999999877443221 11111 10
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhccchhHHHHHhhHHHHHHHHhhhhhhh
Q 006663 138 PPKKDPTLYLHLVFTATFFTGIFQTALGFL-RLGILVDFLSHSTITGFMGGTAIIICLQQLKGLF 201 (636)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~-rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~ 201 (636)
..-.. -.+...+|++.++++++ +++.++..+|.||++|.....--.+....++.+.
T Consensus 306 --T~~~s------r~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~ 362 (415)
T TIGR00801 306 --TRVAS------RWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILI 362 (415)
T ss_pred --cCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 12556678888999988 5899999999999999777665566666666554
No 40
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=91.27 E-value=0.98 Score=36.34 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHH-HHHHHHHHHH--hCCCEEEEEcCChhHHHHHHh
Q 006663 519 NCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIA-AFREILRILE--AKSIKMKLINPRIGVMDKMIL 595 (636)
Q Consensus 519 na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~-~L~~l~~~~~--~~g~~l~l~~~~~~v~~~l~~ 595 (636)
+..++++++.+.++.+ +.|++||++|+.+-||-+. ++-.+.++.. +...++.+.+.++++.+.+++
T Consensus 2 ~G~~~~~~i~~~l~~~-----------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~~ 70 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG-----------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIKR 70 (74)
T ss_pred ChHHHHHHHHHHHhcC-----------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHHH
Confidence 4567888888877653 4599999999998888765 3444444433 235689999999999988876
No 41
>PRK11660 putative transporter; Provisional
Probab=90.69 E-value=9.1 Score=43.68 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=69.8
Q ss_pred CchhhhhhHHHHHHHHHHHhchHhHH----HHHhC--CCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhh
Q 006663 61 NLKLLRYDVLAGITITSLAIPQGISY----AKLAS--IPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIG 134 (636)
Q Consensus 61 ~~~~l~~D~~aGlt~~~~~iPq~~ay----a~lag--lp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~ 134 (636)
+++.+..-+...++++++..-+++.- +...| .++-.=|.+..++.++.++||+.|.. |-.+-.++-..+
T Consensus 274 ~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~--~s~srSa~n~~a--- 348 (568)
T PRK11660 274 SWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITAT--AAIARSAANVRA--- 348 (568)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCccccc--chHHHHHHHHhc---
Confidence 45555555556677777666665543 33333 34455788888999999999988732 211111111110
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHH
Q 006663 135 QKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIIC 193 (636)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~ 193 (636)
+ . .. -..++++|++.++.-++ ++.+..++|.+++.|.+.-+|+.++
T Consensus 349 G-----a--rT-----~la~iv~a~~~ll~ll~-l~~ll~~iP~~vLa~ili~~~~~m~ 394 (568)
T PRK11660 349 G-----A--TS-----PISAVIHALLVLLALLV-LAPLLSYLPLSAMAALLLMVAWNMS 394 (568)
T ss_pred C-----C--Cc-----HHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 0 0 00 13455566654444334 6789999999999999988888764
No 42
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=88.43 E-value=1.7 Score=46.99 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHhhc--CcccCchh----HHHHHhHHHhHhhhcccccCCcccchhHHhhhcCCCCchhHHHHHHHHHHHHHHH
Q 006663 329 IARSFAIMQ--NEQIDGNK----EMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLFL 400 (636)
Q Consensus 329 ~~~~~~~~~--~~~~~~n~----eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~l 400 (636)
..++++... ++..+.+. ++..-=.++-+++.+++.-++.....+.-|...=+-||..+-.++..-..++.++
T Consensus 245 ~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~ 322 (389)
T PF00860_consen 245 MFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAATGVASRRVGLTAGVILILF 322 (389)
T ss_dssp HHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccchhhhhhccccceeeeHHHHHHHHH
Confidence 334444432 34455443 4777778888888888888876666666666654556666666666555555433
No 43
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=87.82 E-value=2.6 Score=45.91 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hcCcccCchhHHHHHhHHHhHhhhc--------ccccCCcccchhHHhhh
Q 006663 311 TVKAGIITALIALAEGIAIARSFAI----MQNEQIDGNKEMIAFGLMNIVGSFT--------SCYLTTGPFSKTAVNFN 377 (636)
Q Consensus 311 ~~~~~~~~~iv~~~~~~~~~~~~~~----~~~~~~~~n~eL~a~G~aNi~~slf--------Gg~p~~~s~srS~~~~~ 377 (636)
+++.+++..+....+..++++...+ +.+.+-...-|=++.=++-+++++- |-+..|+.+||-.....
T Consensus 250 m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~a 328 (451)
T COG2233 250 MLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGA 328 (451)
T ss_pred HHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHH
Confidence 3455667778888888888877654 2455555556667777777777663 44556666666655443
No 44
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=84.50 E-value=6.7 Score=42.96 Aligned_cols=54 Identities=11% Similarity=-0.079 Sum_probs=40.8
Q ss_pred hhHHHHHhHHHhHhhhcccccCCcccchhHHhhhcCCCCchhHHHHHHHHHHHH
Q 006663 344 NKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVL 397 (636)
Q Consensus 344 n~eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~ 397 (636)
++++..--.++=++++++|+-++...+-.+-|...=+-|+..+-........++
T Consensus 274 ~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~il 327 (433)
T PRK11412 274 NTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMC 327 (433)
T ss_pred CcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHH
Confidence 567888888999999999998877776666676666778877777666555544
No 45
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=82.14 E-value=3.3 Score=42.42 Aligned_cols=117 Identities=13% Similarity=0.190 Sum_probs=75.5
Q ss_pred cCCchhhhhhHHHHHHHHHHHhchHhHHHHH----hC--CCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHH
Q 006663 59 NYNLKLLRYDVLAGITITSLAIPQGISYAKL----AS--IPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADT 132 (636)
Q Consensus 59 ~y~~~~l~~D~~aGlt~~~~~iPq~~aya~l----ag--lp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~ 132 (636)
.++++.+..-+..+++.+++..-+++..+.. .| .++-.=|.+..++.++.++||+-|.. |..+-.++-..+.
T Consensus 140 ~~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~--~s~srs~~~~~~G 217 (280)
T PF00916_consen 140 DISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGS--GSFSRSAVNYRAG 217 (280)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccc--cccccchHHHhcC
Confidence 5566666666777888888888888877653 23 34445788889999999999977622 2111111111110
Q ss_pred hhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHH
Q 006663 133 IGQKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAIIIC 193 (636)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~i~ 193 (636)
..+ -..++++|++.+++-++ ++.+++++|.+++.|.+.-+|+.++
T Consensus 218 a~t---------------~~s~~~~~~~~l~~l~~-~~~~l~~iP~~~La~ili~~~~~l~ 262 (280)
T PF00916_consen 218 ART---------------RLSGLISALFVLLVLLF-LAPLLAYIPKAVLAAILIVVGISLI 262 (280)
T ss_pred cce---------------eehhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000 12455556665554444 5679999999999999988887743
No 46
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=81.84 E-value=2.6 Score=40.66 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=65.3
Q ss_pred CCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----ChhHHHHHHhcCCccccCCcccccCHHHHHHH
Q 006663 543 DVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP-----RIGVMDKMILSKFIDVIGKDSVFLSIEDAIDA 617 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~ 617 (636)
..++.+.+|+|++-|+.-.++--=.+..+.+++.+.++.|+.- +..+.+.|++.||. +.++.+|.+...|.+.
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~ 82 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQY 82 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHH
Confidence 4578999999999999877777778888899989999999753 35678899999984 3456899999999999
Q ss_pred HHHHhc
Q 006663 618 CRFSLQ 623 (636)
Q Consensus 618 ~~~~~~ 623 (636)
++++..
T Consensus 83 ~~~~~l 88 (262)
T KOG3040|consen 83 LEENQL 88 (262)
T ss_pred HHhcCC
Confidence 987654
No 47
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=81.62 E-value=2.7 Score=34.86 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=37.5
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhC-CCEEEEEcCCh
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAK-SIKMKLINPRI 587 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~-g~~l~l~~~~~ 587 (636)
+...++|+.+..|+.|||+..|..+.-+.+++ +.++++-|-++
T Consensus 46 ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~~ 89 (112)
T COG5439 46 PSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSKN 89 (112)
T ss_pred hHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCCC
Confidence 57889999999999999999999998888876 88888877543
No 48
>PRK09928 choline transport protein BetT; Provisional
Probab=81.03 E-value=48 Score=38.36 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEc
Q 006663 522 YIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLIN 584 (636)
Q Consensus 522 ~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~ 584 (636)
.-|+|+.+.+... ..+.+ -.|+|.++.-+++++.++++++|.+..+..
T Consensus 528 ~w~~RL~~~~~~p---------~~~~~------~~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 528 NWKQRLSRVMNYP---------GTRYT------RRMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred cHHHHHHHHhcCC---------CHHHH------HHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4778888766432 11222 378999999999999999999999988864
No 49
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=78.69 E-value=5.6 Score=33.99 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=54.3
Q ss_pred EEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHH---HhCCCEEEE
Q 006663 506 ILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRIL---EAKSIKMKL 582 (636)
Q Consensus 506 v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~---~~~g~~l~l 582 (636)
..++++.|.=+=-|+..|-+-+.++++..-. .+.+.+.+++ ++.|+++|...+|.++.+.+ .++|.++.+
T Consensus 9 ~g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v 81 (99)
T PF09345_consen 9 TGRLEISGESYPENAFAFYQPILDWLEAYLA------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKVTV 81 (99)
T ss_pred CCEEEEecccCccCHHHHHHHHHHHHHHHHh------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 3568889988888999998888888876532 2456777887 58999999999999988877 556777665
No 50
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=77.13 E-value=22 Score=32.09 Aligned_cols=96 Identities=8% Similarity=-0.059 Sum_probs=63.6
Q ss_pred CCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCC--EE
Q 006663 503 FPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSI--KM 580 (636)
Q Consensus 503 ~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~--~l 580 (636)
..|..++.+... .+.+++-+...+ .+.+.+.+ +..|.+-...+.++.++++++|. -.
T Consensus 28 ~~GfeVi~lg~~---~s~e~~v~aa~e-------------~~adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~i~ 86 (132)
T TIGR00640 28 DLGFDVDVGPLF---QTPEEIARQAVE-------------ADVHVVGV-----SSLAGGHLTLVPALRKELDKLGRPDIL 86 (132)
T ss_pred hCCcEEEECCCC---CCHHHHHHHHHH-------------cCCCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCCCE
Confidence 346677766653 344454443332 23567774 56677777888999999998754 23
Q ss_pred EEEc--CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHh
Q 006663 581 KLIN--PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 581 ~l~~--~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
++++ ..++-.+.|+..|++..| +.=.+.++-++++.+.+
T Consensus 87 vivGG~~~~~~~~~l~~~Gvd~~~---~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 87 VVVGGVIPPQDFDELKEMGVAEIF---GPGTPIPESAIFLLKKL 127 (132)
T ss_pred EEEeCCCChHhHHHHHHCCCCEEE---CCCCCHHHHHHHHHHHH
Confidence 5555 556668889999999988 34457777777766644
No 51
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=75.84 E-value=26 Score=31.81 Aligned_cols=73 Identities=18% Similarity=0.074 Sum_probs=49.5
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhC---CCEEEEEcCC-------hhHHHHHHhcCCccccCCcccccCHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAK---SIKMKLINPR-------IGVMDKMILSKFIDVIGKDSVFLSIED 613 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~---g~~l~l~~~~-------~~v~~~l~~~gl~~~~~~~~if~t~~~ 613 (636)
+++.|.+.+.. .+....+.++.+++++. ++++.+-+.- +...+.+++.|++..|+... +.++
T Consensus 54 ~~d~V~lS~~~-----~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~---~~~~ 125 (137)
T PRK02261 54 DADAILVSSLY-----GHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT---DPEE 125 (137)
T ss_pred CCCEEEEcCcc-----ccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC---CHHH
Confidence 46777765433 34555666777777766 6667777653 46778999999866654322 8889
Q ss_pred HHHHHHHHhcc
Q 006663 614 AIDACRFSLQK 624 (636)
Q Consensus 614 Al~~~~~~~~~ 624 (636)
.+++++..+.+
T Consensus 126 i~~~l~~~~~~ 136 (137)
T PRK02261 126 AIDDLKKDLNQ 136 (137)
T ss_pred HHHHHHHHhcc
Confidence 99988876654
No 52
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=74.31 E-value=14 Score=40.61 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhchHhHH----HHHhC--CCc--cchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCCCC
Q 006663 69 VLAGITITSLAIPQGISY----AKLAS--IPP--IIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVPPK 140 (636)
Q Consensus 69 ~~aGlt~~~~~iPq~~ay----a~lag--lp~--~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~ 140 (636)
++.=+..+++.+-++++- +...| .++ .-|+.+-.+++++.+++|+++....+-.... . +. .
T Consensus 249 il~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~---i----~~----T 317 (429)
T TIGR03616 249 MLLIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGV---M----AV----T 317 (429)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeee---e----ee----c
Confidence 333344455555555543 33444 233 3689999999999999998874432111000 0 00 0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhccchhHHHHHhhHHHHHHHHhhhh
Q 006663 141 KDPTLYLHLVFTATFFTGIFQTALGFLR-LGILVDFLSHSTITGFMGGTAIIICLQQLK 198 (636)
Q Consensus 141 ~~~~~~~~~~~~~~~l~Gv~~lllg~~r-lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~ 198 (636)
+.. --.+...+|++++++|++. ++.++..+|.||++|.+...--.+....++
T Consensus 318 ---~v~---SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~ 370 (429)
T TIGR03616 318 ---KVY---STLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGAR 370 (429)
T ss_pred ---Ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0124455688888999885 888999999999999887666667777777
No 53
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=71.11 E-value=39 Score=29.82 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=48.6
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhC---CCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAK---SIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~---g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
+.+.|.+-++ |..-...+.++.+++++. ++.+.+.+ ..++..+.++..|+++.+ +-=.+.++.+..++
T Consensus 50 ~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~---~~~~~~~~~~~~~~ 121 (122)
T cd02071 50 DVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF---GPGTSIEEIIDKIR 121 (122)
T ss_pred CCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHh
Confidence 3678886443 566667788888888887 45555554 445567889999999888 55667788877765
No 54
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=70.03 E-value=16 Score=37.53 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=64.5
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----hhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR-----IGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
...+++||.+|-..-...+.--.+..+.+++.|.++.|+.-+ ++-.+.++..|+.. ++++.+|.+...+-.+++
T Consensus 22 ~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ssa~~~a~ylk 100 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSSAYAIADYLK 100 (306)
T ss_pred cCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccChHHHHHHHHH
Confidence 689999999998888888888888999999999999887544 45668889999865 788899999988888887
Q ss_pred HHh
Q 006663 620 FSL 622 (636)
Q Consensus 620 ~~~ 622 (636)
+..
T Consensus 101 ~~~ 103 (306)
T KOG2882|consen 101 KRK 103 (306)
T ss_pred HhC
Confidence 665
No 55
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=66.72 E-value=70 Score=28.04 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=67.5
Q ss_pred CcEEEEEecCc-eeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCC--ccChHHHHHHHHHHHHHHhCCCEE
Q 006663 504 PGILILQLGSP-IYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVS--TIDMTGIAAFREILRILEAKSIKM 580 (636)
Q Consensus 504 ~~v~ivrl~g~-L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~--~iDssgl~~L~~l~~~~~~~g~~l 580 (636)
+++.+..+.+. .--.+.+...+-+..+.+ .....+++|-+.++ |.|-+- +.-=++.+.+.+.++++
T Consensus 4 ~~~~v~~~~s~~~~i~~~qdalDLi~~~~~----------~~~~~i~l~~~~l~~dFF~L~T-glAGeiLQKf~NY~ikl 72 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDEQDALDLIGTAYE----------HGADRIILPKEALSEDFFDLRT-GLAGEILQKFVNYRIKL 72 (113)
T ss_pred CCeEEEEEeCCCCeecchhHHHHHHHHHHH----------cCCCEEEEEhHHCCHHHHHhhc-chHHHHHHHHHhhceeE
Confidence 34555555433 444455555554544422 24789999987764 566554 55667888889999999
Q ss_pred EEEc------CChhHHHHHHhcCCccccCCcccccCHHHHHHH
Q 006663 581 KLIN------PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDA 617 (636)
Q Consensus 581 ~l~~------~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~ 617 (636)
.+++ .+...++....++=-+.+ .+++|.+||+++
T Consensus 73 AivGD~s~~~~S~~l~dfi~EsN~G~~~---~F~~~~~eA~~~ 112 (113)
T PF13788_consen 73 AIVGDFSAYATSKSLRDFIYESNRGNHF---FFVPDEEEAIAW 112 (113)
T ss_pred EEEEcccccccchhHHHHHHHhcCCCeE---EEECCHHHHHhh
Confidence 9983 455667777777665555 799999999986
No 56
>PLN02645 phosphoglycolate phosphatase
Probab=63.41 E-value=26 Score=36.59 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=51.1
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----hhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR-----IGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
.+.+++|+.++=+-+..-+.--.+..++++++|++++++.-+ .++.+.|+..|+. ...+.++.+...+....+
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~--~~~~~I~ts~~~~~~~l~ 105 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN--VTEEEIFSSSFAAAAYLK 105 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC--CChhhEeehHHHHHHHHH
Confidence 689999999987776655555578888899999999887653 3456777888874 233566666554444433
No 57
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=62.25 E-value=1.8e+02 Score=31.53 Aligned_cols=106 Identities=19% Similarity=0.125 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchh-------HHHHHhHHHhHhhhcccccCCcccchhHHhhh---cCC
Q 006663 311 TVKAGIITALIALAEGIAIARSFAIMQNEQIDGNK-------EMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFN---AGC 380 (636)
Q Consensus 311 ~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~n~-------eL~a~G~aNi~~slfGg~p~~~s~srS~~~~~---~Ga 380 (636)
.+..+++-.++++..+..+.-.-++.-| .+..| -.++.|++.+.-|..--+|....-|--..... .+.
T Consensus 23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 23 TLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC
Confidence 4445666777888777665444333333 23333 45778888888888888898877772222222 221
Q ss_pred CCchh-----HHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHH
Q 006663 381 KTAMS-----NVVMSFCMMLVLL--FLAPLFSYTPLVALSAIIMSA 419 (636)
Q Consensus 381 ~T~la-----~i~~~~~~ll~~~--~l~~ll~~IP~~vLa~ili~~ 419 (636)
-.++ .+++|+++++..+ .+..+.+.||.++.++++-=+
T Consensus 101 -~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGI 145 (395)
T TIGR00843 101 -ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGI 145 (395)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 2233 3444554444333 266789999999999988433
No 58
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=62.20 E-value=15 Score=37.61 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=54.5
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----hhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR-----IGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
.+.+++|+.++=+-+...+.-..+..++++++|++++++.-+ .+..+.|++.|+... .++++.+..-+.++++
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~--~~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL--AEQLFSSALCAARLLR 79 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC--hhhEecHHHHHHHHHH
Confidence 578999999988766665555677888889999999887542 244567888998533 4678888777766666
Q ss_pred H
Q 006663 620 F 620 (636)
Q Consensus 620 ~ 620 (636)
+
T Consensus 80 ~ 80 (279)
T TIGR01452 80 Q 80 (279)
T ss_pred h
Confidence 5
No 59
>PRK10444 UMP phosphatase; Provisional
Probab=62.17 E-value=18 Score=36.53 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=53.7
Q ss_pred eEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh-----hHHHHHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 546 EHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI-----GVMDKMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 546 ~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~-----~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
+.+++|+.++=+-+-.-+.--.+..++++++|++++++.-++ +..+.|+..|+. +.+++++.+.+.+.+++.+
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLRR 79 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEecHHHHHHHHHHh
Confidence 578999999887765555556678888999999999976543 467778888873 3456778777766666654
No 60
>PRK11778 putative inner membrane peptidase; Provisional
Probab=61.26 E-value=74 Score=33.53 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=46.8
Q ss_pred CCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCc-cChHHHHHHHHHHHHHHhCCCEEE
Q 006663 503 FPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVST-IDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 503 ~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~-iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
.|.+.+++++|++.-.....+++.+...++... ++ +.|+|+...-.. ++.++.. ....+++++.|..++
T Consensus 89 ~~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~-------~~-~aVvLridSpGG~v~~s~~a--~~~l~~lr~~~kpVv 158 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEVESLREEITAILAVAK-------PG-DEVLLRLESPGGVVHGYGLA--ASQLQRLRDAGIPLT 158 (330)
T ss_pred CCeEEEEEEEEEECCCcchhhHHHHHHHHHhcc-------CC-CeEEEEEeCCCCchhHHHHH--HHHHHHHHhcCCCEE
Confidence 478999999999998888888888887664431 22 578988754433 3444332 223455677777665
Q ss_pred E
Q 006663 582 L 582 (636)
Q Consensus 582 l 582 (636)
.
T Consensus 159 a 159 (330)
T PRK11778 159 V 159 (330)
T ss_pred E
Confidence 5
No 61
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=61.20 E-value=22 Score=36.61 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=48.1
Q ss_pred CCceEEEEEccCCCccChHHH----HHHHHHHHHHHhCCCEEEEEc--CChhHHHHHHhcCCcccc
Q 006663 543 DVIEHVLLDLSGVSTIDMTGI----AAFREILRILEAKSIKMKLIN--PRIGVMDKMILSKFIDVI 602 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl----~~L~~l~~~~~~~g~~l~l~~--~~~~v~~~l~~~gl~~~~ 602 (636)
+..+.+++|+.+.=.=|..-+ ....+..++++++|+.+.++. .++.+.+.++..|+.+.+
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 567899999987555554432 567788999999999999986 678889999999998755
No 62
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=60.83 E-value=42 Score=37.15 Aligned_cols=76 Identities=18% Similarity=0.123 Sum_probs=61.7
Q ss_pred CCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 543 DVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
.+++.||||= .=..+|+.|-.+|.+...+.|++|+.++++.-+|.+....++.=+.+. |.-+.|-..||-+++...
T Consensus 489 G~P~lvVLDE-PNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~-G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 489 GDPFLVVLDE-PNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD-GRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CCCcEEEecC-CCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecC-ChHHhcCCHHHHHHHhcC
Confidence 4678999995 457899999999999999999999999999999988766665443321 444789999999888764
No 63
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=60.27 E-value=15 Score=37.12 Aligned_cols=73 Identities=25% Similarity=0.361 Sum_probs=53.3
Q ss_pred eEEEEEccCCCccChH----HHHHHHHHHHHHHhCCCEEEEEcCC-----hhHHHHHHhcCCccccCCcccccCHHHHHH
Q 006663 546 EHVLLDLSGVSTIDMT----GIAAFREILRILEAKSIKMKLINPR-----IGVMDKMILSKFIDVIGKDSVFLSIEDAID 616 (636)
Q Consensus 546 ~~vIlD~s~V~~iDss----gl~~L~~l~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~t~~~Al~ 616 (636)
+.+++|+.++-+-+.. .+..-.+..++++++|++++++.-+ .++.+.++..|+. +.+++++.+-..+.+
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~ts~~~~~~ 79 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFTPAPAARQ 79 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEcHHHHHHH
Confidence 6789999888665444 3444556667788899999997632 2577888999984 456788888777777
Q ss_pred HHHH
Q 006663 617 ACRF 620 (636)
Q Consensus 617 ~~~~ 620 (636)
++++
T Consensus 80 ~l~~ 83 (257)
T TIGR01458 80 LLEE 83 (257)
T ss_pred HHHh
Confidence 7765
No 64
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=59.78 E-value=1.6e+02 Score=34.00 Aligned_cols=75 Identities=7% Similarity=0.016 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCcc
Q 006663 521 NYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFID 600 (636)
Q Consensus 521 ~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~ 600 (636)
.++-+.+.+.+++ ...+++++|-.. +..+++++.|.+++.-+..+ .+.|+..|+.+
T Consensus 409 Gr~G~~va~~L~~---------~g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~~ 464 (601)
T PRK03659 409 GRFGQVIGRLLMA---------NKMRITVLERDI-------------SAVNLMRKYGYKVYYGDATQ--LELLRAAGAEK 464 (601)
T ss_pred chHHHHHHHHHHh---------CCCCEEEEECCH-------------HHHHHHHhCCCeEEEeeCCC--HHHHHhcCCcc
Confidence 4455555555443 246789999542 23445667788888876654 47888888865
Q ss_pred ccCCcccccCHHHHHHHHH
Q 006663 601 VIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 601 ~~~~~~if~t~~~Al~~~~ 619 (636)
------..+|.++++..++
T Consensus 465 A~~vv~~~~d~~~n~~i~~ 483 (601)
T PRK03659 465 AEAIVITCNEPEDTMKIVE 483 (601)
T ss_pred CCEEEEEeCCHHHHHHHHH
Confidence 3100034455555554443
No 65
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=57.91 E-value=20 Score=36.05 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=52.1
Q ss_pred eEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----ChhHHHHHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 546 EHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP-----RIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 546 ~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
+.+++|+.++-+-+..-+.-=.+..++++++|++++++.- ...+.+.++..|+.. ..+.++.+-..+.+++.+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~--~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPA--TLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--ChhhEeeHHHHHHHHHHh
Confidence 5788888877665444333336777888899999999852 456778899988743 456778777777676665
Q ss_pred H
Q 006663 621 S 621 (636)
Q Consensus 621 ~ 621 (636)
+
T Consensus 80 ~ 80 (249)
T TIGR01457 80 L 80 (249)
T ss_pred c
Confidence 3
No 66
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=55.32 E-value=66 Score=31.30 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=46.2
Q ss_pred EEEEEecCcee---eechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEE
Q 006663 506 ILILQLGSPIY---FANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKM 580 (636)
Q Consensus 506 v~ivrl~g~L~---f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l 580 (636)
+.+++++|.+. -....++.+.++++.++ ++++.|+++... ..-|....+.+.+..+.+++.+..+
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d---------~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKARED---------DSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHhC---------CCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 57888999988 66778888888775432 568899988864 4457777677777777777655544
No 67
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=55.03 E-value=33 Score=34.26 Aligned_cols=73 Identities=15% Similarity=0.040 Sum_probs=51.2
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChh--H--HHHHHhcCCcc-ccCCcccccCHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIG--V--MDKMILSKFID-VIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~--v--~~~l~~~gl~~-~~~~~~if~t~~~Al~~~~ 619 (636)
.+.+++|+.++-+-...-..--.++.++++++|+++.++.-+++ . .+.|+..|+.. .+ +.++.+.+.+.+.++
T Consensus 8 ~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~~~~~~~l~ 85 (242)
T TIGR01459 8 YDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP--EMIISSGEIAVQMIL 85 (242)
T ss_pred CCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc--ceEEccHHHHHHHHH
Confidence 68999999887776555566777888889999999988633332 2 26789999865 44 356666655444443
No 68
>PHA00736 hypothetical protein
Probab=54.99 E-value=61 Score=25.00 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=45.3
Q ss_pred HhHHHHHhCCCccchhhh-hhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHH
Q 006663 83 GISYAKLASIPPIIGLYS-SFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVPPKKDPTLYLHLVFTATFFTGIF 160 (636)
Q Consensus 83 ~~aya~laglp~~~GL~s-~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~ 160 (636)
+++.|+-.|+.|+.+..- ...-++-|-.-|.-|.+..|-.+..+++.-..+ ..+|.......+++|.+
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdfl----------plfwgi~vifgliag~v 72 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFL----------PLFWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 567788889999877543 334567788888888888887777777654433 23565555555555554
No 69
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=52.65 E-value=76 Score=30.91 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=41.1
Q ss_pred EEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHH
Q 006663 506 ILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILE 574 (636)
Q Consensus 506 v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~ 574 (636)
|.+++++|.+. .+.+++.+.++++.++ ++++.|+|+... ..-|....+-+.+..++++
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~d---------~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKDD---------KSIKALLLRINS-PGGTVVASEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhhC---------CCccEEEEEecC-CCCCHHHHHHHHHHHHHhc
Confidence 67899999998 6778888888876433 468899998753 3346666666666666665
No 70
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=51.12 E-value=79 Score=30.89 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=42.2
Q ss_pred EEEEEecCceeeec-------hHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCC
Q 006663 506 ILILQLGSPIYFAN-------CNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSI 578 (636)
Q Consensus 506 v~ivrl~g~L~f~n-------a~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~ 578 (636)
|.++.++|++.-.+ .+++.+.++++-++ ++++.|+|+... ...|...++.+.+..+.+++.+.
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d---------~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~~k 71 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLD---------PKVKAIVLRVNS-PGGSVTASEVIRAELAAARAAGK 71 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhC---------CCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhCCC
Confidence 45666666655433 34566666654332 568999998554 55677777777777777777665
Q ss_pred EEEE
Q 006663 579 KMKL 582 (636)
Q Consensus 579 ~l~l 582 (636)
.++-
T Consensus 72 pVia 75 (211)
T cd07019 72 PVVV 75 (211)
T ss_pred CEEE
Confidence 5443
No 71
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=48.92 E-value=3.1e+02 Score=31.73 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=28.8
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCcc
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFID 600 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~ 600 (636)
..+++++|.+. +..+++++.|.+++.-+..+ .+.|+..|+.+
T Consensus 423 g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~~ 464 (621)
T PRK03562 423 GVKMTVLDHDP-------------DHIETLRKFGMKVFYGDATR--MDLLESAGAAK 464 (621)
T ss_pred CCCEEEEECCH-------------HHHHHHHhcCCeEEEEeCCC--HHHHHhcCCCc
Confidence 36788988653 33455566788887776554 36788888865
No 72
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=48.35 E-value=89 Score=30.59 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHh
Q 006663 520 CNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEA 575 (636)
Q Consensus 520 a~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~ 575 (636)
.+++.+.++++-++ ++++.|+|+.... .-|..+.+.+.+..+++++
T Consensus 27 ~~~l~~~l~~a~~d---------~~i~~Vvl~~~s~-gg~~~~~~~l~~~l~~~~~ 72 (214)
T cd07022 27 YEGIAAAIRAALAD---------PDVRAIVLDIDSP-GGEVAGVFELADAIRAARA 72 (214)
T ss_pred HHHHHHHHHHHhhC---------CCCcEEEEEEeCC-CCcHHHHHHHHHHHHHHhc
Confidence 45666666664322 5689999988654 3467777777777777765
No 73
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=48.07 E-value=66 Score=29.92 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=29.3
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhh
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDE 534 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~ 534 (636)
..|.+.+++++|++.....+.+|+++...+...
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a 128 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVA 128 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhC
Confidence 368899999999999999999999999887654
No 74
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.15 E-value=48 Score=30.05 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=47.1
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCC--EEEEEcCCh-----h---HHHHHHhcCCccccCCcccccCHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSI--KMKLINPRI-----G---VMDKMILSKFIDVIGKDSVFLSIEDA 614 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~--~l~l~~~~~-----~---v~~~l~~~gl~~~~~~~~if~t~~~A 614 (636)
...|-+ +.+-.+.+..+.++.++++++|. ..++++-.+ + +++.|+..|++..|+... +.++.
T Consensus 53 adiVgl-----S~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~i 124 (134)
T TIGR01501 53 ADAILV-----SSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVV 124 (134)
T ss_pred CCEEEE-----ecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHH
Confidence 455554 33335667778888888888764 445566531 1 456799999876665432 77888
Q ss_pred HHHHHHHhc
Q 006663 615 IDACRFSLQ 623 (636)
Q Consensus 615 l~~~~~~~~ 623 (636)
+++++..++
T Consensus 125 v~~l~~~~~ 133 (134)
T TIGR01501 125 IADLKKDLN 133 (134)
T ss_pred HHHHHHHhc
Confidence 888887664
No 75
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=44.48 E-value=56 Score=30.14 Aligned_cols=57 Identities=7% Similarity=0.092 Sum_probs=39.7
Q ss_pred EEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHH
Q 006663 508 ILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILE 574 (636)
Q Consensus 508 ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~ 574 (636)
+++++|+++-...+++.+.++++-++ ++.+.|+++...-. -|.+....+.+..++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d---------~~~~~ivl~~~s~G-g~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEAD---------NSVKAIVLEVNTPG-GRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhC---------CCCceEEEEEECCC-cCHHHHHHHHHHHHHhC
Confidence 47889999999999999998876332 45788888875432 36666555555555554
No 76
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=44.10 E-value=75 Score=34.93 Aligned_cols=117 Identities=18% Similarity=0.320 Sum_probs=65.1
Q ss_pred ccc-ccccc-ccCCchhhhhhHHHHHHHHHHHhchHhHH----HHHhC--CCcc----chhhhhhhhhHhhhhccCCccc
Q 006663 50 FIP-FFEWI-PNYNLKLLRYDVLAGITITSLAIPQGISY----AKLAS--IPPI----IGLYSSFVPPLVYAVFGSSKHL 117 (636)
Q Consensus 50 ~~p-~~~w~-~~y~~~~l~~D~~aGlt~~~~~iPq~~ay----a~lag--lp~~----~GL~s~~i~~lv~~~~G~s~~~ 117 (636)
++| .++|- |+++ .++..+=....++++-++++. |.+++ -||. -|+..-.+++++.++||+....
T Consensus 255 ~vPyP~QwG~P~f~----~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~ 330 (510)
T KOG1292|consen 255 RVPYPFQWGPPTFS----AGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGS 330 (510)
T ss_pred eecCCCccCCCccc----HHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccc
Confidence 455 45664 3444 344444444555555565552 34444 3332 3777777899999999976533
Q ss_pred ccchhHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhccchhHHHHHhh
Q 006663 118 AVGTVAACSLLIADTIGQKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLR-LGILVDFLSHSTITGFMG 186 (636)
Q Consensus 118 ~~Gp~a~~al~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~r-lg~l~~~ip~~Vi~Gf~~ 186 (636)
..-...+- +++ +... .++..+| ++|.+++++|+++ +|-+..-+|.|+++|..+
T Consensus 331 Tt~~ENig--ll~--vTKV-----gSRrvvQ-------~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c 384 (510)
T KOG1292|consen 331 TTSVENIG--LLG--VTKV-----GSRRVVQ-------IAAGFMIFFGIFGKFGAFFASIPDPIVGGLLC 384 (510)
T ss_pred eeecccee--eEe--eeee-----eeeeehh-------hhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 21100000 000 0000 1111122 4578888888874 889999999999999554
No 77
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=43.38 E-value=59 Score=33.21 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=60.2
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC----hh-HHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR----IG-VMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~----~~-v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
.+.+++|+.+|-+-+...+.-=.+..+.++++|++++|..-+ ++ +.+.|+..+..+. ..+.++.|-+.+.+.+.
T Consensus 8 y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~-~~~~i~TS~~at~~~l~ 86 (269)
T COG0647 8 YDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDV-TPDDIVTSGDATADYLA 86 (269)
T ss_pred cCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCC-CHHHeecHHHHHHHHHH
Confidence 578999999999999999999999999999999999986543 23 6677777444332 34578888777777776
Q ss_pred HHhc
Q 006663 620 FSLQ 623 (636)
Q Consensus 620 ~~~~ 623 (636)
++..
T Consensus 87 ~~~~ 90 (269)
T COG0647 87 KQKP 90 (269)
T ss_pred hhCC
Confidence 6543
No 78
>COG4769 Predicted membrane protein [Function unknown]
Probab=42.57 E-value=1.5e+02 Score=27.73 Aligned_cols=117 Identities=20% Similarity=0.149 Sum_probs=64.5
Q ss_pred HHHHHhchHhHHHHHhCCCccchhhhhhhhhHhhhhccC---CcccccchhHHH-HHHHHHHhhccCCCCCChhhHHHHH
Q 006663 75 ITSLAIPQGISYAKLASIPPIIGLYSSFVPPLVYAVFGS---SKHLAVGTVAAC-SLLIADTIGQKVPPKKDPTLYLHLV 150 (636)
Q Consensus 75 ~~~~~iPq~~aya~laglp~~~GL~s~~i~~lv~~~~G~---s~~~~~Gp~a~~-al~~~~~v~~~~~~~~~~~~~~~~~ 150 (636)
+|+-++|..|+.-.+ +--..+....+=.++.++|++ ++....+-.+.. |.+.-..+.+. ++.- -.++.+-
T Consensus 38 vGLaNivvlIa~~~l---~~~~~~~~i~lr~il~AL~sGtlfs~~Fl~sfaG~i~S~L~m~~l~~f-~~k~--~S~lgiS 111 (181)
T COG4769 38 VGLANIVVLIAFETL---NFKDALQTILLRVILQALFSGTLFSPVFLYSFAGAILSTLFMYFLYQF-GPKY--LSLLGIS 111 (181)
T ss_pred hchhhhHHHHhHHhc---cHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHc-CCce--Eeeeehh
Confidence 445555555554332 223344455555555666655 444444433322 22222233332 1100 0123334
Q ss_pred HHHHHHHHHHHHHHHHhhhhh--hhhccchhHHHHHhhHHHHHHHHhhh
Q 006663 151 FTATFFTGIFQTALGFLRLGI--LVDFLSHSTITGFMGGTAIIICLQQL 197 (636)
Q Consensus 151 ~~~~~l~Gv~~lllg~~rlg~--l~~~ip~~Vi~Gf~~gigl~i~~~ql 197 (636)
..-+|..-+.|+++.-+=.+. ...++|--+.-|..+|.++-+..+++
T Consensus 112 ~mGaF~hNl~QLivas~Lv~~~~v~l~lPll~flGivsG~~vg~~~~~~ 160 (181)
T COG4769 112 VMGAFTHNLGQLIVASFLVFTTSVMLYLPLLIFLGIVSGTAVGILANTL 160 (181)
T ss_pred hHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888664433 77899999999999999998887765
No 79
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=41.91 E-value=67 Score=33.26 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=44.1
Q ss_pred CCceEEEEEccCCCccChHHH----HHHHHHHHHHHhCCCEEEEEc--CChhHHHHHHhcCCcccc
Q 006663 543 DVIEHVLLDLSGVSTIDMTGI----AAFREILRILEAKSIKMKLIN--PRIGVMDKMILSKFIDVI 602 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl----~~L~~l~~~~~~~g~~l~l~~--~~~~v~~~l~~~gl~~~~ 602 (636)
+..+.+++|+.+.=.=|-.-+ ....+..++++++|..+.++. .++.+.+.++..|+.+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 457889999976433332211 345677888899999999984 578899999999997655
No 80
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=41.77 E-value=4.2e+02 Score=30.98 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=66.8
Q ss_pred cccccCCch--hhhhh-HHHHHHHHHHHhchHhHHHHH-h---C--CCccchhhhhhhhhHhhhhccCCcccccchhHHH
Q 006663 55 EWIPNYNLK--LLRYD-VLAGITITSLAIPQGISYAKL-A---S--IPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAAC 125 (636)
Q Consensus 55 ~w~~~y~~~--~l~~D-~~aGlt~~~~~iPq~~aya~l-a---g--lp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~ 125 (636)
.|+|.++.- .+..+ +..++.++++++-..++.+.. | + +++-.=|++-.+..++-++|++-|. .|..+=.
T Consensus 313 ~g~~~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~--tgs~sRS 390 (665)
T KOG0236|consen 313 RGFPPPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPT--TGSFSRS 390 (665)
T ss_pred CCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcc--cchhhHH
Confidence 466666552 22333 334667777776666766543 2 3 4455568888888888888876652 2332222
Q ss_pred HHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHH
Q 006663 126 SLLIADTIGQKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLGILVDFLSHSTITGFMGGTAII 191 (636)
Q Consensus 126 al~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ip~~Vi~Gf~~gigl~ 191 (636)
++-..+...+ + ...+++|++. ++.+.-++.+..|+|..++...+..++..
T Consensus 391 av~~~sG~~T------------~---~s~i~~~~~v-l~~l~~l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 391 AVNIKSGGRT------------Q---VAGIVSAALV-LLALLFLGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred HHHhhcCCcc------------h---HHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHhhH
Confidence 2211111111 1 1233334332 23333378999999999999987766654
No 81
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=41.31 E-value=2.5e+02 Score=30.93 Aligned_cols=93 Identities=11% Similarity=-0.004 Sum_probs=51.5
Q ss_pred cCceee---echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhC-CCEEEEEcCC-
Q 006663 512 GSPIYF---ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAK-SIKMKLINPR- 586 (636)
Q Consensus 512 ~g~L~f---~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~-g~~l~l~~~~- 586 (636)
..|+|. .+.+.+++.++...++ +++..+++-+..-..-|. ..+...+.+..++. +..++.+...
T Consensus 344 ~NPlDl~~~~~~~~~~~al~~l~~d---------p~vd~Vlv~~~~~~~~~~--~~~a~~l~~~~~~~~~KPvv~~~~gg 412 (447)
T TIGR02717 344 KNPVDVLGDATPERYAKALKTVAED---------ENVDGVVVVLTPTAMTDP--EEVAKGIIEGAKKSNEKPVVAGFMGG 412 (447)
T ss_pred CCCEecCCCCCHHHHHHHHHHHHcC---------CCCCEEEEEccCCccCCH--HHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 455554 3445666666655443 346666654432222222 22333344444443 6677554432
Q ss_pred ---hhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHh
Q 006663 587 ---IGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 587 ---~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
++.++.|+..|+ ..|.+.++|++.+....
T Consensus 413 ~~~~~~~~~L~~~Gi-------p~f~~p~~A~~al~~~~ 444 (447)
T TIGR02717 413 KSVDPAKRILEENGI-------PNYTFPERAVKALSALY 444 (447)
T ss_pred ccHHHHHHHHHhCCC-------CccCCHHHHHHHHHHHH
Confidence 345666777665 68999999999877544
No 82
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=40.57 E-value=1.7e+02 Score=26.89 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=52.9
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE--EEc--CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK--LIN--PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~--l~~--~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
...|+ ++..|-.......++.+.++++|..=. +++ .+++-.+.|+..|++..++. =.++.|+++....
T Consensus 64 v~vIg-----vSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~p---gt~~~~~~~~v~~ 135 (143)
T COG2185 64 VDVIG-----VSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGP---GTPIEEALSDLLT 135 (143)
T ss_pred CCEEE-----EEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeCC---CCCHHHHHHHHHH
Confidence 56666 567888888999999999999876432 444 35666789999999998843 4566777777766
Q ss_pred Hhcc
Q 006663 621 SLQK 624 (636)
Q Consensus 621 ~~~~ 624 (636)
++..
T Consensus 136 ~l~~ 139 (143)
T COG2185 136 RLGA 139 (143)
T ss_pred HHHh
Confidence 6654
No 83
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=40.34 E-value=87 Score=30.56 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=37.2
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-Ch--hHHHHHHhcCCccccCCc
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP-RI--GVMDKMILSKFIDVIGKD 605 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-~~--~v~~~l~~~gl~~~~~~~ 605 (636)
+..+++|...+..=|-.|++.+.++.+... +.++++... .+ .+.+.+...|...++.++
T Consensus 38 pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 38 FSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSPLDGVLSKA 99 (207)
T ss_pred CCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecC
Confidence 578888877765556679888888776432 456555433 32 244555567887777543
No 84
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=40.12 E-value=5.1e+02 Score=28.46 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCcccCchhHHHHHhHHHhHhhhccccc
Q 006663 326 GIAIARSFAIMQNEQIDGNKEMIAFGLMNIVGSFTSCYL 364 (636)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~n~eL~a~G~aNi~~slfGg~p 364 (636)
..++.-.++.-.+++.|..+.-...++.|..-++.-|+.
T Consensus 230 G~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 230 GFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred HHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 333444555566777889999999999999988876653
No 85
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=39.52 E-value=1.3e+02 Score=29.54 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=45.4
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKF 598 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl 598 (636)
.++.+.|| +....+|.-++.=++++.+.++++|+-+.++ ..+|++.|..+.=
T Consensus 157 ~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLIT--DHNVREtL~i~dR 208 (243)
T COG1137 157 NPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLIT--DHNVRETLDICDR 208 (243)
T ss_pred CCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEc--cccHHHHHhhhhe
Confidence 47899999 5678899999999999999999999999999 5668888887763
No 86
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.26 E-value=1.9e+02 Score=23.93 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=46.1
Q ss_pred eeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHH
Q 006663 516 YFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR--IGVMDKM 593 (636)
Q Consensus 516 ~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l 593 (636)
.+.|.++..+.+.+ .++..+++|.+ .-|-+|.+.+..+.+.. .+..+++.... +......
T Consensus 28 ~~~~~~~~~~~~~~-------------~~~d~iiid~~---~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~ 89 (112)
T PF00072_consen 28 TASSGEEALELLKK-------------HPPDLIIIDLE---LPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEA 89 (112)
T ss_dssp EESSHHHHHHHHHH-------------STESEEEEESS---SSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHH
T ss_pred EECCHHHHHHHhcc-------------cCceEEEEEee---ecccccccccccccccc--ccccEEEecCCCCHHHHHHH
Confidence 34566666655543 34789999954 44467888888885554 56777776643 4466666
Q ss_pred HhcCCcccc
Q 006663 594 ILSKFIDVI 602 (636)
Q Consensus 594 ~~~gl~~~~ 602 (636)
.+.|..+.+
T Consensus 90 ~~~g~~~~l 98 (112)
T PF00072_consen 90 LRAGADDYL 98 (112)
T ss_dssp HHTTESEEE
T ss_pred HHCCCCEEE
Confidence 688988877
No 87
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=38.60 E-value=5.8e+02 Score=28.15 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHHhcCCcchhhHHHHHHHHHhhhhhhhhHHHHH
Q 006663 384 MSNVVMSFCMMLVLLFLAPLFSYTPLVALSAIIMSAMFGLINYEEAILLFKVDKLDFSICMAAFLGVAFISMDIGLMLSV 463 (636)
Q Consensus 384 la~i~~~~~~ll~~~~l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gi~~gv 463 (636)
-++++.++++.+.+++.+-+=+..|+..++.+.-.+..... +-.-...-.. ...++.-.++..+.+|+++++
T Consensus 135 ~~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~-------~t~g~~~p~~-~~~~l~~~ll~P~~ig~ai~~ 206 (459)
T PF10337_consen 135 RASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIF-------LTYGPLFPTF-FAYTLGKTLLKPFLIGIAIAL 206 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-------HHhCcCcCcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888788888888887555544333322221 0000000111 233344455667778888888
Q ss_pred HHHHHHH
Q 006663 464 GLALLRT 470 (636)
Q Consensus 464 ~~s~~~~ 470 (636)
+++++.|
T Consensus 207 ~vslliF 213 (459)
T PF10337_consen 207 VVSLLIF 213 (459)
T ss_pred HHheeec
Confidence 8887754
No 88
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=38.51 E-value=6.4e+02 Score=28.61 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCcc
Q 006663 521 NYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFID 600 (636)
Q Consensus 521 ~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~ 600 (636)
.++-+++.+.++++ ..+.+++|-+. +..+++++.|.+.+..+..+ .+.+++.|+.+
T Consensus 426 G~~G~~la~~L~~~---------g~~vvvId~d~-------------~~~~~~~~~g~~~i~GD~~~--~~~L~~a~i~~ 481 (558)
T PRK10669 426 GRVGSLLGEKLLAA---------GIPLVVIETSR-------------TRVDELRERGIRAVLGNAAN--EEIMQLAHLDC 481 (558)
T ss_pred ChHHHHHHHHHHHC---------CCCEEEEECCH-------------HHHHHHHHCCCeEEEcCCCC--HHHHHhcCccc
Confidence 44444555544432 35788888531 23455566788888776654 57788888754
No 89
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=37.64 E-value=1.4e+02 Score=34.52 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=56.8
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcCCccccCCcccccCHHHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI--GVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFS 621 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~ 621 (636)
++.+++| +..+.+|+.....+.+..+++.++|.++.++--++ ++.+.+++.-+.+. |+...+.+.+|+.++.++.
T Consensus 185 p~vlllD-EPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~~~ 261 (617)
T TIGR00955 185 PPLLFCD-EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFSDL 261 (617)
T ss_pred CCEEEee-CCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHHHc
Confidence 5789999 67899999999999999999988888887776654 46777777655542 4445666777887776654
No 90
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=37.55 E-value=4.4e+02 Score=26.43 Aligned_cols=51 Identities=29% Similarity=0.489 Sum_probs=37.0
Q ss_pred hhhhhhHHHHHHHHHHHhchHhHHHHHh---CCCccchhhhhhhhhHhhhhccCCcccc
Q 006663 63 KLLRYDVLAGITITSLAIPQGISYAKLA---SIPPIIGLYSSFVPPLVYAVFGSSKHLA 118 (636)
Q Consensus 63 ~~l~~D~~aGlt~~~~~iPq~~aya~la---glp~~~GL~s~~i~~lv~~~~G~s~~~~ 118 (636)
+.++..+.+++-+.+-.+|.+++|+.++ |+++ +++.....++|+ |+|..+.
T Consensus 10 ~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~---~e~~lmS~~iyA--GasQfv~ 63 (238)
T COG1296 10 AEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSP---LEAILMSLLIYA--GASQFVA 63 (238)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHc--cHHHHHH
Confidence 4678888888899999999999999875 5554 445555666665 5555443
No 91
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=36.66 E-value=1.4e+02 Score=32.39 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHh-h--hhhhhh-ccchhHHHHHhhHHHHHHH
Q 006663 155 FFTGIFQTALGFL-R--LGILVD-FLSHSTITGFMGGTAIIIC 193 (636)
Q Consensus 155 ~l~Gv~~lllg~~-r--lg~l~~-~ip~~Vi~Gf~~gigl~i~ 193 (636)
+...++.+++|.+ | +..+-| ++|.||++|++.++.+.+.
T Consensus 9 ~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 9 LVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 3334455566644 2 344444 8999999999998776664
No 92
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=34.68 E-value=2.5e+02 Score=28.62 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=19.7
Q ss_pred hhhhhhhccchhHHHHHhhHHHHH
Q 006663 168 RLGILVDFLSHSTITGFMGGTAII 191 (636)
Q Consensus 168 rlg~l~~~ip~~Vi~Gf~~gigl~ 191 (636)
-...+++.+|..++.|+..+-|++
T Consensus 165 ~v~~il~~iP~~v~~Gl~vaggmL 188 (265)
T TIGR00822 165 AVQAMLKAIPEVVTHGLQIAGGII 188 (265)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhhH
Confidence 356789999999999988877765
No 93
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=34.57 E-value=1.8e+02 Score=29.15 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=50.8
Q ss_pred cCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHH-----H----------------------
Q 006663 512 GSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGI-----A---------------------- 564 (636)
Q Consensus 512 ~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl-----~---------------------- 564 (636)
+.++.+-+.+++++.+.. .++-.|++|+.+. -+||+.. .
T Consensus 43 ~~~~~~~~~~~~~~~~~~-------------~~p~aViFDlDgT-LlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~ 108 (237)
T TIGR01672 43 QAPIHWISVAQIENSLEG-------------RPPIAVSFDIDDT-VLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNG 108 (237)
T ss_pred cCCeeEEEHHHHHHhcCC-------------CCCeEEEEeCCCc-cccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHh
Confidence 345667788887766542 2244889998764 5666651 0
Q ss_pred ---------HHHHHHHHHHhCCCEEEEEcCC------hhHHHHHHhcCCcccc
Q 006663 565 ---------AFREILRILEAKSIKMKLINPR------IGVMDKMILSKFIDVI 602 (636)
Q Consensus 565 ---------~L~~l~~~~~~~g~~l~l~~~~------~~v~~~l~~~gl~~~~ 602 (636)
...++.+.++++|+++.++.-+ ..+...++..|+.+.+
T Consensus 109 ~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f 161 (237)
T TIGR01672 109 WDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMN 161 (237)
T ss_pred cccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchhe
Confidence 0556778888999999998654 3456666678886543
No 94
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=34.03 E-value=1.1e+02 Score=30.85 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=38.1
Q ss_pred CCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC
Q 006663 543 DVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR 586 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~ 586 (636)
.+++.++|| +..+.+|..+-..+.++.+++++.|..+.++.-.
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457899999 7899999999999999999999999999888544
No 95
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=83 Score=34.19 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=49.9
Q ss_pred CcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEE
Q 006663 504 PGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLI 583 (636)
Q Consensus 504 ~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~ 583 (636)
+.+.+++++|.++=++++++++.+++.-++ ....+|+++..=...+.+.. ++.+...+..+.+...
T Consensus 26 ~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~----------~a~~vvl~ldTPGGl~~sm~----~iv~~i~~s~vPV~~y 91 (436)
T COG1030 26 KKVYVIEIDGAIDPASADYLQRALQSAEEE----------NAAAVVLELDTPGGLLDSMR----QIVRAILNSPVPVIGY 91 (436)
T ss_pred CeEEEEEecCccCHHHHHHHHHHHHHHHhC----------CCcEEEEEecCCCchHHHHH----HHHHHHHcCCCCEEEE
Confidence 468999999999999999999999886443 36799999877777666554 4556666667774443
No 96
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=33.06 E-value=2.9e+02 Score=32.51 Aligned_cols=74 Identities=11% Similarity=-0.055 Sum_probs=51.3
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCC---EEEEEcC-ChhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSI---KMKLINP-RIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~---~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
+.+.++| ...|.+-......+.+.+++.|. .+++.|. .++-.+.++..|++..+ +.=.+..+.++.+.
T Consensus 633 ~a~ivvl-----cs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i---~~g~d~~~~L~~l~ 704 (714)
T PRK09426 633 DVHVVGV-----SSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAIF---GPGTVIADAAIDLL 704 (714)
T ss_pred CCCEEEE-----eccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEEE---CCCCCHHHHHHHHH
Confidence 3567775 45666666778888999998875 3444443 34445789999998888 45557777777777
Q ss_pred HHhccc
Q 006663 620 FSLQKE 625 (636)
Q Consensus 620 ~~~~~~ 625 (636)
+++..+
T Consensus 705 ~~l~~~ 710 (714)
T PRK09426 705 ELLSAR 710 (714)
T ss_pred HHHHHh
Confidence 776544
No 97
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=32.13 E-value=3.4e+02 Score=29.15 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=48.0
Q ss_pred echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEcc-CCCccChHHHHHHHHHHHHHHhCC--CEEEEEcCC---hhHHH
Q 006663 518 ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLS-GVSTIDMTGIAAFREILRILEAKS--IKMKLINPR---IGVMD 591 (636)
Q Consensus 518 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s-~V~~iDssgl~~L~~l~~~~~~~g--~~l~l~~~~---~~v~~ 591 (636)
++.+.+++.++...++ ++++.|++... +....|. ....+.+..++.+ ..++.+-.. +..++
T Consensus 293 a~~~~~~~al~~l~~d---------p~vd~ilv~i~gg~~~~~~----va~~i~~a~~~~~~~kPvvv~~~g~~~~~~~~ 359 (386)
T TIGR01016 293 ASAERVREALKLVLSD---------KSVKVVFINIFGGITRCDL----VAKGLVEALKEVGVNVPVVVRLEGTNVEEGKK 359 (386)
T ss_pred CCHHHHHHHHHHHHcC---------CCCCEEEEECCCCCCCHHH----HHHHHHHHHHhcCCCCcEEEEeCCccHHHHHH
Confidence 3456666666655443 45777776544 2222232 2234444444444 566443322 34567
Q ss_pred HHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 592 KMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 592 ~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
.|+.+|+ . + ..|.+.++|++.+-.
T Consensus 360 ~L~~~G~-~-i---p~~~~~~~Av~~~~~ 383 (386)
T TIGR01016 360 ILAESGL-N-I---IFATSMEEAAEKAVE 383 (386)
T ss_pred HHHHcCC-C-c---cccCCHHHHHHHHHH
Confidence 7888884 1 2 589999999987653
No 98
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.95 E-value=1.7e+02 Score=25.99 Aligned_cols=55 Identities=11% Similarity=-0.015 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHHHhC--CCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHH
Q 006663 559 DMTGIAAFREILRILEAK--SIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFS 621 (636)
Q Consensus 559 Dssgl~~L~~l~~~~~~~--g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~ 621 (636)
|..+...+..+.++++++ +..+..+-.+..+++.++..|+ -.++.+||++.+.++
T Consensus 12 ~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~--------~~p~~~eaL~~l~~~ 68 (127)
T cd03412 12 YPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGI--------EVDTPEEALAKLAAD 68 (127)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCC--------CCCCHHHHHHHHHHC
Confidence 447778888888888765 5578888888888888887652 357888888777653
No 99
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.85 E-value=1.6e+02 Score=26.12 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=40.5
Q ss_pred HHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhc
Q 006663 569 ILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQ 623 (636)
Q Consensus 569 l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~ 623 (636)
+.+.++++|+++++|. ..+.....|+..|+.-..++. .|++||++.+..-..
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~g~l 109 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLEGEL 109 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhcCCc
Confidence 5677788999999976 688999999999985554432 899999987765443
No 100
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=31.64 E-value=90 Score=32.64 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=40.5
Q ss_pred CceEEEEEccCC-----------CccChH-HHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHHHh----cCCcccc
Q 006663 544 VIEHVLLDLSGV-----------STIDMT-GIAAFREILRILEAKSIKMKLINPR--IGVMDKMIL----SKFIDVI 602 (636)
Q Consensus 544 ~~~~vIlD~s~V-----------~~iDss-gl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~----~gl~~~~ 602 (636)
..|.+|+|+.+. ..|... .-.-+.+..++++++|+.+.+|.-+ +.+.+.|+. .++.+.|
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDF 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHe
Confidence 468999999752 112222 1345788889999999999999655 466778887 6665443
No 101
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=31.51 E-value=1e+02 Score=29.68 Aligned_cols=55 Identities=22% Similarity=0.117 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHHHHhhcC-CHHHHHHHhcCCcchhhHHHHHHHHHhhhhhhhhH
Q 006663 405 SYTPLVALSAIIMSAMFGLI-NYEEAILLFKVDKLDFSICMAAFLGVAFISMDIGL 459 (636)
Q Consensus 405 ~~IP~~vLa~ili~~~~~li-~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gi 459 (636)
..+...+|-..++.+|+++= +...++++++.++.-..+-+.+.+.++..+...+.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888899999999985 56678889999988887777776666654444333
No 102
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=31.47 E-value=62 Score=31.86 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcCCccccC
Q 006663 564 AAFREILRILEAKSIKMKLINPRI--GVMDKMILSKFIDVIG 603 (636)
Q Consensus 564 ~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~ 603 (636)
.-..++.++++++|+.+..+.-++ .+.+.|+++|+.+.|+
T Consensus 89 pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~ 130 (221)
T COG0637 89 PGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFD 130 (221)
T ss_pred ccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcc
Confidence 456778899999999999998887 7899999999988873
No 103
>PLN03211 ABC transporter G-25; Provisional
Probab=31.22 E-value=1.4e+02 Score=34.75 Aligned_cols=75 Identities=17% Similarity=0.065 Sum_probs=55.4
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChh--HHHHHHhcCCccccCCcccccCHHHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIG--VMDKMILSKFIDVIGKDSVFLSIEDAIDACRFS 621 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~--v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~ 621 (636)
++.+++| +..+.+|+.....+.++.++++++|.++.++.-+++ +.+.+++.-+.+. |+-..+.+.++++++.++.
T Consensus 225 P~iLlLD-EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 225 PSLLILD-EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred CCEEEEe-CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHHHHHHHHC
Confidence 5789999 778999999999999999999888888888766553 4555655444332 3334456788888877653
No 104
>PF02308 MgtC: MgtC family; InterPro: IPR003416 The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known, but it is thought that MgtC may act as an accessory protein for MgtB, thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins.; GO: 0016020 membrane
Probab=30.23 E-value=3.9e+02 Score=24.01 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=20.7
Q ss_pred cchhHHhhhcCCCC-chhHHHHHHHHHHHHHHHHH
Q 006663 369 FSKTAVNFNAGCKT-AMSNVVMSFCMMLVLLFLAP 402 (636)
Q Consensus 369 ~srS~~~~~~Ga~T-~la~i~~~~~~ll~~~~l~~ 402 (636)
+.|---+..+|-|| .+.++..++..++...+..+
T Consensus 13 lERe~~~~~aG~RTf~Lv~l~g~l~~~l~~~~~~~ 47 (134)
T PF02308_consen 13 LEREWRGKPAGLRTFALVSLAGALSALLSSEFFLS 47 (134)
T ss_pred hhcccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 44555556788887 56666666666655544333
No 105
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=30.22 E-value=1.6e+02 Score=28.88 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 519 NCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 519 na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
+...+.+.++++.++ ++++.|+|+...-.+ +.+.++.+.+..+++++.+..++
T Consensus 30 ~~~~l~~~l~~a~~d---------~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVi 82 (222)
T cd07018 30 SLRDLLEALEKAAED---------DRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVI 82 (222)
T ss_pred cHHHHHHHHHHHhcC---------CCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEE
Confidence 445566666654322 568999999988777 88888888888888877666543
No 106
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=30.05 E-value=1.7e+02 Score=22.45 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHhh
Q 006663 261 APMVTVVVGCLFAYFAH 277 (636)
Q Consensus 261 ~~li~vi~~t~~~~~~~ 277 (636)
...+++++|.+++|+-|
T Consensus 41 GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 41 GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred hHHHHHHHHHHHHHHcc
Confidence 67889999999998765
No 107
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=29.41 E-value=1.9e+02 Score=31.60 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHhhhcccCCCCCCceEEEEE-ccCCCccChHHHHHHHHHHHHHHhCCCE--EEEEcCC-hhHHHHHH
Q 006663 519 NCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLD-LSGVSTIDMTGIAAFREILRILEAKSIK--MKLINPR-IGVMDKMI 594 (636)
Q Consensus 519 na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD-~s~V~~iDssgl~~L~~l~~~~~~~g~~--l~l~~~~-~~v~~~l~ 594 (636)
+.++.++.++-...+ ++++.|.++ |.+++..|--+- .+.+..+++. .++. +++.+.+ ++-+++|+
T Consensus 329 ~~~~v~~a~~ii~~d---------~~vk~iliNIfGGI~~cd~iA~-gii~a~~~~~-~~~pivvRl~Gtn~~~g~~~l~ 397 (422)
T PLN00124 329 SEQQVVEAFKILTSD---------DKVKAILVNIFGGIMKCDVIAS-GIVNAAKQVG-LKVPLVVRLEGTNVDQGKRILK 397 (422)
T ss_pred CHHHHHHHHHHHhcC---------CCCcEEEEEecCCccchHHHHH-HHHHHHHhcC-CCCcEEEEcCCCCHHHHHHHHH
Confidence 556666666543322 568888887 478888888884 3333334432 2333 4445544 34478888
Q ss_pred hcCCccccCCcccccCHHHHHHHHHH
Q 006663 595 LSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 595 ~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
.+|+ +. ..++|.+||++.+-.
T Consensus 398 ~~~~-~~----~~~~~l~~A~~~~v~ 418 (422)
T PLN00124 398 ESGM-TL----ITAEDLDDAAEKAVK 418 (422)
T ss_pred hCCC-Ce----EEcCCHHHHHHHHHH
Confidence 8887 32 589999999987653
No 108
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=28.97 E-value=1.1e+02 Score=29.02 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=33.6
Q ss_pred EEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHH
Q 006663 506 ILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTG 562 (636)
Q Consensus 506 v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssg 562 (636)
+.+++++|.++....+.+++.+++..++ +.+.|++++..-...-.++
T Consensus 1 v~vi~i~g~I~~~~~~~l~~~l~~a~~~----------~~~~ivl~inspGG~v~~~ 47 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKEE----------GADAVVLDIDTPGGRVDSA 47 (178)
T ss_pred CEEEEEeeEECHHHHHHHHHHHHHHHhC----------CCCeEEEEEECcCCCHHHH
Confidence 4689999999998888888888776443 2678888875555443333
No 109
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=28.64 E-value=1.4e+02 Score=24.36 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=35.7
Q ss_pred HHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 569 ILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 569 l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
+.+.+.++|+++++|+ +.+...+.|+..|+.-.. ..-.+++||++.+.
T Consensus 45 ~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~---~~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQ---GAGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEE---STSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEE---cCCCCHHHHHHHHh
Confidence 4455556899988887 688999999999984333 14578899988764
No 110
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=28.01 E-value=2.2e+02 Score=30.52 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHh-h--hhhhhh-ccchhHHHHHhhHHH
Q 006663 156 FTGIFQTALGFL-R--LGILVD-FLSHSTITGFMGGTA 189 (636)
Q Consensus 156 l~Gv~~lllg~~-r--lg~l~~-~ip~~Vi~Gf~~gig 189 (636)
....+.+++|.+ | ...+-| ++|.||++|++.++-
T Consensus 10 ~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il 47 (368)
T PF03616_consen 10 ALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAIL 47 (368)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHH
Confidence 334455666644 3 444544 899999999996554
No 111
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.65 E-value=4e+02 Score=22.93 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=41.0
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhC---CCEEEEEcCChhH-HHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAK---SIKMKLINPRIGV-MDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~---g~~l~l~~~~~~v-~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
+++.|.+-++. ......+.++.+++++. ++.+++.+..... .+.++..|++ .++.+-.+|++.+.
T Consensus 50 ~pdvV~iS~~~-----~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D------~~~~~~~~~~~~~~ 118 (119)
T cd02067 50 DADAIGLSGLL-----TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD------AYFGPATEAVEVLK 118 (119)
T ss_pred CCCEEEEeccc-----cccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe------EEECCHHHHHHHHh
Confidence 46788876553 33445556666666665 5667777765443 3577777774 45667778887664
No 112
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=27.37 E-value=1.2e+02 Score=30.22 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=44.5
Q ss_pred EEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEc-----CChhHHHHHHh-cCCccccCCcccccCHHHHHHHHHH
Q 006663 548 VLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLIN-----PRIGVMDKMIL-SKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 548 vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~-----~~~~v~~~l~~-~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
+++|+.++-+-+..-+.-=.+..+.++++|.++.+.. ...+..+.|+. .|+. +..+.++.+-..+.++..+
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~--~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD--VSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC--CCHHHeeeHHHHHHHHHHH
Confidence 3567666655444433333466677788899998874 22455567777 5652 3455777777777776664
No 113
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=27.31 E-value=6.7e+02 Score=27.55 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=50.1
Q ss_pred chhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 006663 96 IGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVPPKKDPTLYLHLVFTATFFTGIFQTALGFLRLGILVDF 175 (636)
Q Consensus 96 ~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~lllg~~rlg~l~~~ 175 (636)
+.+++-.++..+.+++|+|+... .+++-..-....+. ...++.+|+.+++. +| +.-+...
T Consensus 286 ~al~~D~v~t~~ga~~GtS~~t~-------------yIESaaGva~GgrT-----Gltavv~g~lFl~~-lf-~~Pl~~~ 345 (436)
T COG2252 286 KALLADSVATVVGALFGTSTVTA-------------YIESAAGVAAGGRT-----GLTAVVTGLLFLLS-LF-FSPLAAL 345 (436)
T ss_pred hHHHHhHHHHHHHHhcCCcchhh-------------hhhccccccccccc-----ccHHHHHHHHHHHH-HH-HHHHHHh
Confidence 45888888888888999887321 11110000000011 12455667776666 44 5889999
Q ss_pred cchhHHHHHhhHHHHHHH
Q 006663 176 LSHSTITGFMGGTAIIIC 193 (636)
Q Consensus 176 ip~~Vi~Gf~~gigl~i~ 193 (636)
+|..+..+.+.-+|..+.
T Consensus 346 vP~~AtapaLi~vG~lM~ 363 (436)
T COG2252 346 VPGYATAPALIIVGALML 363 (436)
T ss_pred CcHhhhhHHHHHHHHHHH
Confidence 999999999999998765
No 114
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=27.01 E-value=5.3e+02 Score=27.71 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=48.7
Q ss_pred echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHh--CCCEEEEEcCC---hhHHHH
Q 006663 518 ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEA--KSIKMKLINPR---IGVMDK 592 (636)
Q Consensus 518 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~--~g~~l~l~~~~---~~v~~~ 592 (636)
.+.+.+++.++...++ +.+..+++.+.. ..-+. -.....+.+..++ .+..++.+... ...++.
T Consensus 293 ~~~e~~~~aL~~l~~d---------~~vd~vlv~~~~-~~~~~--~~va~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~ 360 (388)
T PRK00696 293 ATAERVAEAFKIILSD---------PNVKAILVNIFG-GITRC--DVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKI 360 (388)
T ss_pred CCHHHHHHHHHHHhcC---------CCCCEEEEEeCC-CCCCH--HHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH
Confidence 4556777777665543 456777655431 11122 1222334444444 46666444322 345666
Q ss_pred HHhcCCccccCCcccccCHHHHHHHHHHH
Q 006663 593 MILSKFIDVIGKDSVFLSIEDAIDACRFS 621 (636)
Q Consensus 593 l~~~gl~~~~~~~~if~t~~~Al~~~~~~ 621 (636)
|+..|+ -+ .+|+|.++|+..+...
T Consensus 361 L~~~Gi--~i---p~f~~pe~A~~al~~~ 384 (388)
T PRK00696 361 LAESGL--NI---IAADTLDDAAQKAVEA 384 (388)
T ss_pred HHHCCC--Cc---eecCCHHHHHHHHHHH
Confidence 887774 11 5899999999887744
No 115
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=26.81 E-value=4.1e+02 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.635 Sum_probs=18.8
Q ss_pred HhCCCccchhhhhhhhhHhhhhc
Q 006663 89 LASIPPIIGLYSSFVPPLVYAVF 111 (636)
Q Consensus 89 laglp~~~GL~s~~i~~lv~~~~ 111 (636)
++|=||.|||++++-+++.|+++
T Consensus 51 iSGEP~aygl~~ai~g~iA~~lm 73 (269)
T PF04206_consen 51 ISGEPPAYGLWCAIAGAIAWALM 73 (269)
T ss_pred ccCCCchhhHHHHHHHHHHHHHH
Confidence 56888888888888888888876
No 116
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=26.15 E-value=6.8e+02 Score=25.54 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=36.2
Q ss_pred HHHHhhhhhHHHHHHHHH------HHHhhcCCHHHHHHHhcCCcchhhHHHHHHHHHhhhhh--hhhHH-HHHHHHHH
Q 006663 400 LAPLFSYTPLVALSAIIM------SAMFGLINYEEAILLFKVDKLDFSICMAAFLGVAFISM--DIGLM-LSVGLALL 468 (636)
Q Consensus 400 l~~ll~~IP~~vLa~ili------~~~~~li~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~--~~Gi~-~gv~~s~~ 468 (636)
...+++.+|.-++.|+-+ .+|+.|+ ++.+||. ..+.-+++.|+.+.+.++ ..++. +|++++++
T Consensus 167 v~~~~~~iP~~v~~GL~vaggmLPAvGfAmL----l~~m~~k--~~~~ff~lGF~l~ayl~~~~~i~iaiig~~iA~~ 238 (267)
T PRK09757 167 MQALVKAMPAWLTHGFEVAGGILPAVGFGLL----LRVMFKA--QYIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHH----HHHHhhc--chHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Confidence 445789999976665443 4444443 2445542 244456677888877774 34433 45555553
No 117
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=25.77 E-value=3.6e+02 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=18.5
Q ss_pred hhhhhhccchhHHHHHhhHHHHH
Q 006663 169 LGILVDFLSHSTITGFMGGTAII 191 (636)
Q Consensus 169 lg~l~~~ip~~Vi~Gf~~gigl~ 191 (636)
...+++.+|.-++.|+..+-|++
T Consensus 167 v~~~~~~iP~~v~~GL~vaggmL 189 (267)
T PRK09757 167 MQALVKAMPAWLTHGFEVAGGIL 189 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhchH
Confidence 56789999999998888766654
No 118
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=25.69 E-value=1.2e+02 Score=25.61 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHH
Q 006663 262 PMVTVVVGCLFAYF 275 (636)
Q Consensus 262 ~li~vi~~t~~~~~ 275 (636)
|++.+++|.++..+
T Consensus 37 PlIs~viGilLG~~ 50 (93)
T PF06946_consen 37 PLISVVIGILLGAA 50 (93)
T ss_pred hHHHHHHHHHHHHH
Confidence 45555556555443
No 119
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.67 E-value=1.4e+02 Score=26.87 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=40.0
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCC---EEEEEcCC-------hhHHHHHHhcCCccccCCcccccCHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSI---KMKLINPR-------IGVMDKMILSKFIDVIGKDSVFLSIEDA 614 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~---~l~l~~~~-------~~v~~~l~~~gl~~~~~~~~if~t~~~A 614 (636)
...|.+ +.+-.+.+..+.++.++++++|. .+.+=+.. ++.++.|+..|++..|++.. +.++.
T Consensus 51 adiVgl-----S~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt---~~~~i 122 (128)
T cd02072 51 ADAILV-----SSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT---PPEEA 122 (128)
T ss_pred CCEEEE-----eccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC---CHHHH
Confidence 455554 44445556677777777777654 34433321 33567899999987765432 66666
Q ss_pred HHHH
Q 006663 615 IDAC 618 (636)
Q Consensus 615 l~~~ 618 (636)
++.+
T Consensus 123 ~~~l 126 (128)
T cd02072 123 IADL 126 (128)
T ss_pred HHHH
Confidence 6554
No 120
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=25.66 E-value=5.2e+02 Score=25.85 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=18.6
Q ss_pred hhhhhhccchhHHHHHhhHHHHH
Q 006663 169 LGILVDFLSHSTITGFMGGTAII 191 (636)
Q Consensus 169 lg~l~~~ip~~Vi~Gf~~gigl~ 191 (636)
...+.+.+|.-+..|+..+-|+.
T Consensus 167 v~~~~~~iP~~v~~gl~vagg~L 189 (238)
T PF03609_consen 167 VQALLNAIPEWVLNGLNVAGGML 189 (238)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 56789999999999888776654
No 121
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=25.55 E-value=5.6e+02 Score=26.91 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=44.1
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChh-HHHH-HHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIG-VMDK-MILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~-v~~~-l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
.+.|++| ...+.+|..+...|.+..++.. .+..+.++.-+++ +... -.++-.+.+ --++.+++.++.++
T Consensus 113 ~~kV~ii-Ep~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ti~SRc~~~~~-----~~~~~~~~~~~L~~ 183 (325)
T PRK08699 113 GLRVILI-HPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPTIKSRCRKMVL-----PAPSHEEALAYLRE 183 (325)
T ss_pred CceEEEE-echhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHHHHHHhhhhcC-----CCCCHHHHHHHHHh
Confidence 3555565 7899999999999999998875 4677777765543 2222 222322222 12466777777765
No 122
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=25.38 E-value=3.5e+02 Score=29.15 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHh---hhhhhhh-ccchhHHHHHhhHHHHHHHH
Q 006663 152 TATFFTGIFQTALGFL---RLGILVD-FLSHSTITGFMGGTAIIICL 194 (636)
Q Consensus 152 ~~~~l~Gv~~lllg~~---rlg~l~~-~ip~~Vi~Gf~~gigl~i~~ 194 (636)
..++...+..+++|.+ |+.++-+ .+|.||++|++.++-..+..
T Consensus 8 ~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~ 54 (404)
T COG0786 8 LETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLH 54 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHH
Confidence 4566667777888876 2334444 79999999999888766543
No 123
>PRK10692 hypothetical protein; Provisional
Probab=25.22 E-value=1.3e+02 Score=24.85 Aligned_cols=44 Identities=30% Similarity=0.491 Sum_probs=29.2
Q ss_pred hhhhhhHHHHHHHHHHHhchHhHHHHHhCCCcc--------chhhhhhhhhHhh
Q 006663 63 KLLRYDVLAGITITSLAIPQGISYAKLASIPPI--------IGLYSSFVPPLVY 108 (636)
Q Consensus 63 ~~l~~D~~aGlt~~~~~iPq~~aya~laglp~~--------~GL~s~~i~~lv~ 108 (636)
..+.++++-|+ |++.+--+++|.+++.+|.. ..|++.|++++++
T Consensus 6 a~~~GN~lMgl--Gmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllW 57 (92)
T PRK10692 6 ASLLGNVLMGL--GLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLW 57 (92)
T ss_pred hHHHhhHHHHH--HHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHH
Confidence 45677777775 44555568899999877652 2566666666654
No 124
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=24.88 E-value=82 Score=27.43 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCcc-ChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHH
Q 006663 519 NCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTI-DMTGIAAFREILRILEAKSIKMKLINPRIGVMD 591 (636)
Q Consensus 519 na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~i-Dssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~ 591 (636)
+.+++.+.+.+.+++. ....+|+| ..+++ + -+.+..+...+++.++++++++.+ ..++
T Consensus 71 ~~~~l~~~~~~~l~~~---------~~~~lviD--e~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~-~l~~ 129 (131)
T PF13401_consen 71 TSDELRSLLIDALDRR---------RVVLLVID--EADHLFS---DEFLEFLRSLLNESNIKVVLVGTP-ELEK 129 (131)
T ss_dssp -HHHHHHHHHHHHHHC---------TEEEEEEE--TTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS-TTTT
T ss_pred CHHHHHHHHHHHHHhc---------CCeEEEEe--ChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh-hhHh
Confidence 4455555555555442 23578888 56666 5 444555544445789999999876 4443
No 125
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=24.56 E-value=2.5e+02 Score=26.59 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=38.9
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGV 589 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v 589 (636)
+++.+++| +....+|....+.+.+..++++++|..+.++.-+.+.
T Consensus 107 ~p~llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 107 PGTLFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred CCCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 36899998 6789999999999999999988889999998777654
No 126
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=23.91 E-value=1.8e+02 Score=29.97 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=45.0
Q ss_pred echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHh
Q 006663 518 ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMIL 595 (636)
Q Consensus 518 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~ 595 (636)
.+.+.+|+.+++.|++. .++-.||.|+ .+. ++.|.++.+...+|++.+++.=-..++..-+++
T Consensus 130 ~~~p~IKE~vR~~I~~A--------~kVIAIVMD~--FTD-----~dIf~DLleAa~kR~VpVYiLLD~~~~~~Fl~M 192 (284)
T PF07894_consen 130 DGQPHIKEVVRRMIQQA--------QKVIAIVMDV--FTD-----VDIFCDLLEAANKRGVPVYILLDEQNLPHFLEM 192 (284)
T ss_pred CCCCCHHHHHHHHHHHh--------cceeEEEeec--ccc-----HHHHHHHHHHHHhcCCcEEEEechhcChHHHHH
Confidence 47788999999998875 3355566663 333 468999999999999999997555555444433
No 127
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=23.84 E-value=2.1e+02 Score=28.14 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=32.7
Q ss_pred CceEEEEEccCCCccChHH--HHHHHHHHHHHHhCCCEEEEEcC
Q 006663 544 VIEHVLLDLSGVSTIDMTG--IAAFREILRILEAKSIKMKLINP 585 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssg--l~~L~~l~~~~~~~g~~l~l~~~ 585 (636)
....+++| .++.+.... .+.|-.+++.+.++|.++++++-
T Consensus 97 ~~DlL~iD--Di~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 97 SADLLIID--DIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp TSSEEEEE--TGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred cCCEEEEe--cchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 46789998 567776554 77999999999999999999873
No 128
>PRK10949 protease 4; Provisional
Probab=23.63 E-value=3.9e+02 Score=30.87 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred cCCCcEEEEEecCceee-------echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHH
Q 006663 501 QGFPGILILQLGSPIYF-------ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRIL 573 (636)
Q Consensus 501 ~~~~~v~ivrl~g~L~f-------~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~ 573 (636)
...+.|.++.++|.+.- .+.+.+.+.++++.++ ++++.|||+...-.. ..++.+.+.+..+++
T Consensus 323 ~~~~~Iavi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D---------~~vkaVvLrInSpGG-s~~ase~i~~~i~~~ 392 (618)
T PRK10949 323 DTGGSIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLD---------PKVKAIVLRVNSPGG-SVTASEVIRAELAAA 392 (618)
T ss_pred CCCCeEEEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhC---------CCCcEEEEEecCCCC-cHHHHHHHHHHHHHH
Q ss_pred HhCCCEEEEE
Q 006663 574 EAKSIKMKLI 583 (636)
Q Consensus 574 ~~~g~~l~l~ 583 (636)
++.|..++..
T Consensus 393 r~~gKPVvas 402 (618)
T PRK10949 393 RAAGKPVVVS 402 (618)
T ss_pred HhcCCcEEEE
No 129
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=23.45 E-value=4.7e+02 Score=25.01 Aligned_cols=76 Identities=12% Similarity=0.271 Sum_probs=50.1
Q ss_pred CcEEEEEecCceeeec-hHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHh---CCCE
Q 006663 504 PGILILQLGSPIYFAN-CNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEA---KSIK 579 (636)
Q Consensus 504 ~~v~ivrl~g~L~f~n-a~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~---~g~~ 579 (636)
+-+.++|+++.+.--+ .++..+++.+.+.+-.. ...++..|=|||..-+ +-+..-.++.+++|+ .+.+
T Consensus 5 ~~~~~vrL~~r~~~Ld~~~~~~~~i~~~l~~W~~----~G~~v~giQIDfDa~t----~~L~~Y~~fL~~LR~~LP~~~~ 76 (181)
T PF11340_consen 5 PPVAVVRLDGRLPRLDWPEQVLARILQLLQRWQA----AGNNVAGIQIDFDAAT----SRLPAYAQFLQQLRQRLPPDYR 76 (181)
T ss_pred CceeEEEEEeecccCCCCHHHHHHHHHHHHHHHH----cCCCceEEEEecCccc----cchHHHHHHHHHHHHhCCCCce
Confidence 4578899999888777 66676767666544321 2346889999986554 344444455555554 3899
Q ss_pred EEEEcCCh
Q 006663 580 MKLINPRI 587 (636)
Q Consensus 580 l~l~~~~~ 587 (636)
+.++++.+
T Consensus 77 LSIT~L~d 84 (181)
T PF11340_consen 77 LSITALPD 84 (181)
T ss_pred EeeEEehh
Confidence 99988653
No 130
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=23.44 E-value=2e+02 Score=23.99 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHH
Q 006663 569 ILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDAC 618 (636)
Q Consensus 569 l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~ 618 (636)
+.+.+.+.|+++++|+ +.+...+.|+..|+.-..... .+++|+++.+
T Consensus 55 ~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~---~~i~~vl~~~ 102 (103)
T cd00851 55 AAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE---GTVEEAIEAL 102 (103)
T ss_pred HHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC---CCHHHHHHhh
Confidence 4555566899999886 578889999999985443322 6888888753
No 131
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=23.35 E-value=3.9e+02 Score=30.62 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=48.1
Q ss_pred CCCcEEEEEecCceeee-------chHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHH
Q 006663 502 GFPGILILQLGSPIYFA-------NCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILE 574 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~-------na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~ 574 (636)
..+++.++.++|++.-. ..+.+.+.++++.++ ++++.|+|....-.. +..+.+.+.+..++++
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D---------~~VkaIVLrinSpGG-s~~ase~i~~~i~~~~ 375 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSD---------PDIKAVVLRINSPGG-SVFASEIIRRELARAQ 375 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhC---------CCceEEEEEecCCCC-CHHHHHHHHHHHHHHH
Confidence 35689999999998632 245566666654332 568999999754432 5566677777777777
Q ss_pred hCCCEEEE
Q 006663 575 AKSIKMKL 582 (636)
Q Consensus 575 ~~g~~l~l 582 (636)
+.|..++.
T Consensus 376 ~~gKPVva 383 (584)
T TIGR00705 376 ARGKPVIV 383 (584)
T ss_pred hCCCcEEE
Confidence 77766544
No 132
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=23.33 E-value=2.5e+02 Score=29.81 Aligned_cols=114 Identities=10% Similarity=0.067 Sum_probs=79.0
Q ss_pred ccCCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHh-CCC
Q 006663 500 AQGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEA-KSI 578 (636)
Q Consensus 500 ~~~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~-~g~ 578 (636)
.++.|.+.++|+...+--.+=.++.+.+.+++.+. ...-+++..+.+-..||..+.++...+.+.=-- .|-
T Consensus 184 L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~--------~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQ 255 (369)
T COG1509 184 LRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKS--------RKPVWLVTHFNHPNEITPEAREACAKLRDAGVPLLNQ 255 (369)
T ss_pred HhcCCceeEEEeecccceechhhccHHHHHHHhcc--------CceEEEEcccCChhhcCHHHHHHHHHHHHcCceeecc
Confidence 45778999999999888878888888888876652 235678888999999999987777655443211 234
Q ss_pred EEEEEcCChh--H----HHHHHhcCCcc--------ccCCcccccCHHHHHHHHHHH
Q 006663 579 KMKLINPRIG--V----MDKMILSKFID--------VIGKDSVFLSIEDAIDACRFS 621 (636)
Q Consensus 579 ~l~l~~~~~~--v----~~~l~~~gl~~--------~~~~~~if~t~~~Al~~~~~~ 621 (636)
.+.+-|+|++ + .+.|...|... .-|..|+..+++++.+-.+..
T Consensus 256 sVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~l 312 (369)
T COG1509 256 SVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEEL 312 (369)
T ss_pred hheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHHHH
Confidence 5667777654 3 23444555422 235568889999998877653
No 133
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.95 E-value=5.6e+02 Score=25.71 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=26.0
Q ss_pred HhCCCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhc
Q 006663 89 LASIPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQ 135 (636)
Q Consensus 89 laglp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~ 135 (636)
++|=||.|||++++-+++.|+++..- +-..+.++.+++.+..
T Consensus 51 iSGEP~aygl~~~i~g~vA~~l~~~~-----~~~~ilAi~~Ga~vaa 92 (283)
T TIGR01113 51 ISGEPVSYGLYCGIAGAVAYVLMSYF-----GLPPLIALAVGAVIAA 92 (283)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHH
Confidence 46778888888888888888776211 2234455555555443
No 134
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=22.95 E-value=3.8e+02 Score=27.41 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=73.4
Q ss_pred EEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHH--HHHHHHhCCCEEEEE
Q 006663 506 ILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFRE--ILRILEAKSIKMKLI 583 (636)
Q Consensus 506 v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~--l~~~~~~~g~~l~l~ 583 (636)
-.++...+-|+-.+.+.+.++++++-++. ..++..|++|-..=..|+.-+.+.+.+ +-++-++.|+ +.++
T Consensus 34 ~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt-------~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGv-LLlV 105 (271)
T COG1512 34 QRVTDLTGTLSAAERGALEQQLADLEQKT-------GAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGV-LLLV 105 (271)
T ss_pred ceeeeccccCChhhHHHHHHHHHHHHhcc-------CCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCE-EEEE
Confidence 36777888888888899999998864332 356778888877767777777777777 3334444444 4444
Q ss_pred cCCh-----------------hHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhccccc
Q 006663 584 NPRI-----------------GVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQKEKH 627 (636)
Q Consensus 584 ~~~~-----------------~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~~~~ 627 (636)
..++ .....+-+--+...|.+.+.+.-++++++...+.+..+.+
T Consensus 106 a~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i~P~fr~gny~~gi~~~id~l~~~l~g~~~ 166 (271)
T COG1512 106 AMNDRRVRIEVGYGLEGVLTDAQAGRIIRETIAPAFRDGNYAGGLEAGIDRLVALLAGEPL 166 (271)
T ss_pred EcCCCeEEEEEecCcccccChHHHHHHHHhhhCcccccCcHHHHHHHHHHHHHHHHcCCCC
Confidence 4444 2233333344445555567777888888888777765543
No 135
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=22.89 E-value=2.7e+02 Score=31.92 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEE
Q 006663 521 NYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKL 582 (636)
Q Consensus 521 ~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l 582 (636)
..+.+.++++.++ ++++.|+||......-+.+.++-+.+..+++++.|..++-
T Consensus 79 ~~i~~~i~~A~~D---------~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA 131 (584)
T TIGR00705 79 FDIVNAIRQAADD---------RRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYA 131 (584)
T ss_pred HHHHHHHHHHhcC---------CCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 4455555554332 6799999999877777788888898989999888877655
No 136
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=22.73 E-value=8.7e+02 Score=25.18 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=22.7
Q ss_pred EEEEecCceeeechHHHHHHHHHHHHhh
Q 006663 507 LILQLGSPIYFANCNYIRERVLRWIRDE 534 (636)
Q Consensus 507 ~ivrl~g~L~f~na~~~~~~l~~~i~~~ 534 (636)
..+.+++.+...++.++.+++++.+.+.
T Consensus 249 ~~i~v~~~ls~~eah~I~~~ie~~i~~~ 276 (304)
T COG0053 249 VHIEVDPDLSLEEAHEIADEVEKRIKKE 276 (304)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHh
Confidence 3466788899999999999998887765
No 137
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=22.70 E-value=1.5e+02 Score=25.94 Aligned_cols=58 Identities=7% Similarity=-0.087 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCh----------hHHHHHHhcCCccccC--CcccccCHHHHHHHHHHHh
Q 006663 565 AFREILRILEAKSIKMKLINPRI----------GVMDKMILSKFIDVIG--KDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 565 ~L~~l~~~~~~~g~~l~l~~~~~----------~v~~~l~~~gl~~~~~--~~~if~t~~~Al~~~~~~~ 622 (636)
-..+..+.++++|+++.++.-++ .+.+.+++.|+...+. .......-.++++++.+++
T Consensus 29 ~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~KP~~~~~~~~~~~~ 98 (132)
T TIGR01662 29 EVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACPHCRKPKPGMFLEALKRF 98 (132)
T ss_pred CHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECCCCCCCChHHHHHHHHHc
Confidence 44567788889999999987655 4778888888753220 0011122345666666555
No 138
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=22.56 E-value=8.3e+02 Score=24.86 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=19.2
Q ss_pred hhhhhhhccchhHHHHHhhHHHHH
Q 006663 168 RLGILVDFLSHSTITGFMGGTAII 191 (636)
Q Consensus 168 rlg~l~~~ip~~Vi~Gf~~gigl~ 191 (636)
-...+++.+|.-+..|+..+-|++
T Consensus 166 ~v~~~~~~iP~~v~~GL~vaggmL 189 (262)
T PRK15065 166 AVQSMLNAIPEVLTGGLNIGGGMI 189 (262)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhhH
Confidence 356789999999999888766654
No 139
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=22.37 E-value=6.9e+02 Score=27.03 Aligned_cols=88 Identities=8% Similarity=0.073 Sum_probs=49.8
Q ss_pred echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEcc-CCCccChHHHHHHHHHHHHHHh--CCCEEEEEcC---ChhHHH
Q 006663 518 ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLS-GVSTIDMTGIAAFREILRILEA--KSIKMKLINP---RIGVMD 591 (636)
Q Consensus 518 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s-~V~~iDssgl~~L~~l~~~~~~--~g~~l~l~~~---~~~v~~ 591 (636)
++.+.+++.++...++ +.++.|++... ..+..|. ....+.+..++ .+..++.+-. .+..++
T Consensus 293 a~~e~~~~aL~~ll~D---------p~VdaVlv~i~ggi~~~~~----vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~ 359 (392)
T PRK14046 293 ASPERVAKAFRLVLSD---------RNVKAILVNIFAGINRCDW----VAEGVVQAAREVGIDVPLVVRLAGTNVEEGRK 359 (392)
T ss_pred CCHHHHHHHHHHHHcC---------CCCCEEEEEcCCCCCCHHH----HHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHH
Confidence 3556677766665543 45778777654 3333332 22334444444 4566633331 234566
Q ss_pred HHHhcCCccccCCcccccCHHHHHHHHHHHhc
Q 006663 592 KMILSKFIDVIGKDSVFLSIEDAIDACRFSLQ 623 (636)
Q Consensus 592 ~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~ 623 (636)
.|+.+|+. . ..++|.+||++.+-...+
T Consensus 360 iL~~~Gip-v----f~~~~~~~a~~~~v~~~~ 386 (392)
T PRK14046 360 ILAESGLP-I----ITADTLAEAAEKAVEAWK 386 (392)
T ss_pred HHHHcCCC-e----eecCCHHHHHHHHHHHHh
Confidence 68888862 2 357899999887765443
No 140
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=22.30 E-value=1.3e+02 Score=30.01 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=32.1
Q ss_pred CceEEEEEccC-CCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh
Q 006663 544 VIEHVLLDLSG-VSTIDMTGIAAFREILRILEAKSIKMKLINPRI 587 (636)
Q Consensus 544 ~~~~vIlD~s~-V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~ 587 (636)
+-+++++||-+ |...-+. +.+..+.+.+++.|.+++.+++-+
T Consensus 96 ~~~Y~lFDcPGQVELft~h--~~l~~I~~~Lek~~~rl~~V~LiD 138 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHH--DSLNKIFRKLEKLDYRLVAVNLID 138 (290)
T ss_pred cCcEEEEeCCCcEEEEecc--chHHHHHHHHHHcCceEEEEEeee
Confidence 35799999954 6655444 468889999999999998877544
No 141
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=22.30 E-value=5.1e+02 Score=27.08 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=37.3
Q ss_pred hhhcccccCCcccchhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 006663 357 GSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMSFCMMLVLLFLAPLFSY 406 (636)
Q Consensus 357 ~slfGg~p~~~s~srS~~~~~~Ga~T~la~i~~~~~~ll~~~~l~~ll~~ 406 (636)
.++|+++|+. ...-..+..+.|+.++...+...+=++++.+..+.++.+
T Consensus 85 TA~~~~~PGg-~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~ 133 (318)
T PF05145_consen 85 TAFFASMPGG-LSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASL 133 (318)
T ss_pred HHHHHcCCcc-HHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999965 455566778899999999999988877777655544433
No 142
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=22.15 E-value=4.9e+02 Score=26.49 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-hhHHHHHHhcCCccccCCcccccCHHHHHH
Q 006663 543 DVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR-IGVMDKMILSKFIDVIGKDSVFLSIEDAID 616 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~-~~v~~~l~~~gl~~~~~~~~if~t~~~Al~ 616 (636)
.++..+||| ..-+.+|..-.+.|++...+++++|.++.|.+-. .+|.+.-++.-+.+. |..-++-++++.=+
T Consensus 147 HePeLlILD-EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~k-G~~V~~G~v~~ir~ 219 (300)
T COG4152 147 HEPELLILD-EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKK-GQTVLYGTVEDIRR 219 (300)
T ss_pred cCCCEEEec-CCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecC-CceEEeccHHHHHH
Confidence 357899999 5688899999999999999999999999998643 444444444333322 33356667666654
No 143
>TIGR00930 2a30 K-Cl cotransporter.
Probab=22.08 E-value=1.4e+03 Score=28.06 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCEE----EE-EcCChhHHHHHHhcCCccccC
Q 006663 567 REILRILEAKSIKM----KL-INPRIGVMDKMILSKFIDVIG 603 (636)
Q Consensus 567 ~~l~~~~~~~g~~l----~l-~~~~~~v~~~l~~~gl~~~~~ 603 (636)
+++.+.+++++++= .. -+..+-++..++.+|+-..-+
T Consensus 627 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~P 668 (953)
T TIGR00930 627 AKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKP 668 (953)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCC
Confidence 44555556655532 11 123467889999999876544
No 144
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.02 E-value=1.4e+02 Score=25.49 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHH
Q 006663 233 IGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFA 273 (636)
Q Consensus 233 lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~ 273 (636)
+.+.+++.+++-+++.++++...++..+..++++++|..-.
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34444555566677788877533322223344444444333
No 145
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=21.92 E-value=1.6e+02 Score=27.46 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=39.6
Q ss_pred CceEEEEEccCCCccChH---------HH----HHHHHHHHHHHhCCCEEEEEcCChh--------------HHHHHHhc
Q 006663 544 VIEHVLLDLSGVSTIDMT---------GI----AAFREILRILEAKSIKMKLINPRIG--------------VMDKMILS 596 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDss---------gl----~~L~~l~~~~~~~g~~l~l~~~~~~--------------v~~~l~~~ 596 (636)
..+.+++|..++-..+-+ -. .-..+..+.++++|.++.++.-++. +.+.++..
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~ 91 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL 91 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc
Confidence 468899999886444222 11 2357778888999999999876553 56788988
Q ss_pred CCc
Q 006663 597 KFI 599 (636)
Q Consensus 597 gl~ 599 (636)
|+.
T Consensus 92 gl~ 94 (166)
T TIGR01664 92 KVP 94 (166)
T ss_pred CCC
Confidence 874
No 146
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=21.90 E-value=6.3e+02 Score=25.47 Aligned_cols=41 Identities=12% Similarity=0.394 Sum_probs=26.3
Q ss_pred HhCCCccchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhc
Q 006663 89 LASIPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQ 135 (636)
Q Consensus 89 laglp~~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~ 135 (636)
++|=||.|||++++-+++.|+++. .+-..+.++.+++.+..
T Consensus 58 iSGEP~aygl~~ai~g~vA~~lm~------~~~~~vlAi~~Ga~vaa 98 (292)
T PRK00972 58 ISGEPVAYGLWCAIAGAVAWALMA------FGLNPVLAIIVGAGVAA 98 (292)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHH------cCccHHHHHHHHHHHHH
Confidence 467888888888888888888762 12234455555554443
No 147
>PRK01973 septum formation inhibitor; Reviewed
Probab=21.38 E-value=4.2e+02 Score=27.14 Aligned_cols=81 Identities=9% Similarity=0.088 Sum_probs=51.4
Q ss_pred EEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC
Q 006663 506 ILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP 585 (636)
Q Consensus 506 v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~ 585 (636)
..++++.. .+.+.+++++.+.+++.++ -=+-..||||++.+..-+. .-|..+.+.++++|...+=+..
T Consensus 18 l~vL~L~~----~d~~~l~~~L~~ki~~aP~-----FF~~aPvVlDl~~l~~~~~---~dl~~L~~~lr~~gl~~VGV~g 85 (271)
T PRK01973 18 TLLFVVKT----ADLDALRAELVKRFEATPE-----FFADDVVAIDVRRLADDER---VPLDDIRQMLNDVRMRPIGVVA 85 (271)
T ss_pred EEEEEeCC----CCHHHHHHHHHHHHHhChH-----hhcCCCEEEEchHhCCCcc---cCHHHHHHHHHHCCCEEEEEeC
Confidence 44555544 3567778888776665421 1124578999999975331 1266688888888877666555
Q ss_pred ChhHHHHHHhcCC
Q 006663 586 RIGVMDKMILSKF 598 (636)
Q Consensus 586 ~~~v~~~l~~~gl 598 (636)
+++.++.-...|+
T Consensus 86 ~~~~~~~a~~~gL 98 (271)
T PRK01973 86 QPAQQGWAGEAGL 98 (271)
T ss_pred CHHHHHHHHHcCC
Confidence 6666555666676
No 148
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=20.93 E-value=3.9e+02 Score=28.70 Aligned_cols=53 Identities=9% Similarity=-0.125 Sum_probs=32.1
Q ss_pred HHHHHHhCCCEEEEEcCCh----hHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhccccc
Q 006663 569 ILRILEAKSIKMKLINPRI----GVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQKEKH 627 (636)
Q Consensus 569 l~~~~~~~g~~l~l~~~~~----~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~~~~ 627 (636)
+.+.+.+.+..+++||... .|++.|...+-.. --.|.+||-++.++...+.+=
T Consensus 321 ~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~------~~~~~~~a~~~~~~l~~~~Ry 377 (382)
T cd06207 321 VYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKH------GGGDEELAEKKIEELEERGRY 377 (382)
T ss_pred HHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCe
Confidence 3334444445899999876 5666666544321 124678888888765554443
No 149
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=20.75 E-value=1.3e+02 Score=30.15 Aligned_cols=68 Identities=22% Similarity=0.426 Sum_probs=48.3
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCC-EEEEEcCChh--HHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSI-KMKLINPRIG--VMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~-~l~l~~~~~~--v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
.++.|.++-+.=..|-+.+ +.++..|. ++++++++.. -...-.-+|-.+.+.+.++|+|.+||++.|.
T Consensus 4 ~i~iVLVep~~~gNIG~vA--------RaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~ 74 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVA--------RAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCD 74 (242)
T ss_pred ccEEEEEcCCCCccHHHHH--------HHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcCCC
Confidence 3566666666666665544 55566664 7999999874 4444445677788888899999999998665
No 150
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=20.74 E-value=1.4e+02 Score=27.73 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCcccc
Q 006663 565 AFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVI 602 (636)
Q Consensus 565 ~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~ 602 (636)
-..++.+.++++|.++.++..++.....+++.|+.+.+
T Consensus 91 g~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~~~f 128 (185)
T TIGR01990 91 GIKNLLDDLKKNNIKIALASASKNAPTVLEKLGLIDYF 128 (185)
T ss_pred cHHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcHhhC
Confidence 34556677888899999988776778889999987666
No 151
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=20.19 E-value=3.2e+02 Score=23.87 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=38.4
Q ss_pred CCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhccccc
Q 006663 576 KSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQKEKH 627 (636)
Q Consensus 576 ~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~~~~ 627 (636)
+|+++++|+ +.+...+.|+..|+.-... .--.+++||++.....++.+.+
T Consensus 62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~--~~~~~v~eal~~l~~~~~~~~~ 112 (119)
T TIGR02663 62 KDCAILYCLAIGGPAAAKVVAAKIHPIKV--NEPESISELLERLQKMLKGNPP 112 (119)
T ss_pred CCCcEEEEhhcCccHHHHHHHcCCeeEec--CCCccHHHHHHHHHHHHcCCCC
Confidence 699999986 6788899999999854321 1235799999999998876554
No 152
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.06 E-value=2.6e+02 Score=26.53 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=13.8
Q ss_pred hhHHHHHhhHHHHHHHHhhhhhhh
Q 006663 178 HSTITGFMGGTAIIICLQQLKGLF 201 (636)
Q Consensus 178 ~~Vi~Gf~~gigl~i~~~ql~~~~ 201 (636)
.+.+++.+.++|+.++...+..+.
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665443
No 153
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=20.01 E-value=5.2e+02 Score=25.72 Aligned_cols=81 Identities=10% Similarity=0.041 Sum_probs=59.6
Q ss_pred EEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC
Q 006663 506 ILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP 585 (636)
Q Consensus 506 v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~ 585 (636)
...+-+..+|.-.+.+.+++++...+. .+..-+.|++=.-+|...++.+.++.+++++.|+- +++
T Consensus 72 LvrviVpk~Ll~q~~~~L~~~lg~l~~------------r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gi-ll~-- 136 (229)
T PF12340_consen 72 LVRVIVPKALLEQMRQMLRSRLGGLLN------------RRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGI-LLA-- 136 (229)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHhC------------CeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCE-EEe--
Confidence 333444566776777888888876543 36778899999999999999999999999987763 344
Q ss_pred ChhHHHHHHhcCCccc
Q 006663 586 RIGVMDKMILSKFIDV 601 (636)
Q Consensus 586 ~~~v~~~l~~~gl~~~ 601 (636)
.|+-..-|+..|+...
T Consensus 137 ~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 137 TPEHILSFKLKGLERL 152 (229)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 6666777887776443
No 154
>PTZ00445 p36-lilke protein; Provisional
Probab=20.01 E-value=2.6e+02 Score=27.48 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=38.7
Q ss_pred CCceEEEEEccC--CC-----ccChH---------HHHHHHHHHHHHHhCCCEEEEEcCChhHH
Q 006663 543 DVIEHVLLDLSG--VS-----TIDMT---------GIAAFREILRILEAKSIKMKLINPRIGVM 590 (636)
Q Consensus 543 ~~~~~vIlD~s~--V~-----~iDss---------gl~~L~~l~~~~~~~g~~l~l~~~~~~v~ 590 (636)
..++.|+.|+.+ +. +.|-. +-.-+..+.+++++.|+++.++--++++.
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 458999999865 45 66665 66779999999999999999999888744
Done!