Query 006663
Match_columns 636
No_of_seqs 334 out of 2241
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 2.8E-30 9.5E-35 277.7 33.6 344 64-448 13-374 (429)
2 3llo_A Prestin; STAS domain, c 99.9 1.6E-24 5.6E-29 199.1 10.4 139 476-620 1-140 (143)
3 4dgh_A Sulfate permease family 99.9 1.2E-22 4.2E-27 183.4 8.9 128 487-625 2-129 (130)
4 4dgf_A Sulfate transporter sul 99.9 3.1E-22 1.1E-26 182.0 7.8 130 484-625 2-132 (135)
5 2kln_A Probable sulphate-trans 99.9 6.4E-22 2.2E-26 178.7 9.1 127 491-624 1-127 (130)
6 3ny7_A YCHM protein, sulfate t 99.8 4.6E-19 1.6E-23 156.9 7.4 105 501-617 13-117 (118)
7 2ka5_A Putative anti-sigma fac 99.7 3.2E-17 1.1E-21 146.6 7.7 108 499-619 15-123 (125)
8 3t6o_A Sulfate transporter/ant 99.7 1.4E-16 4.7E-21 141.6 8.5 106 501-618 10-119 (121)
9 1th8_B Anti-sigma F factor ant 99.6 2.2E-16 7.7E-21 138.9 8.2 106 502-619 9-114 (116)
10 4hyl_A Stage II sporulation pr 99.6 1.9E-16 6.4E-21 139.9 6.8 105 502-620 10-114 (117)
11 1h4x_A SPOIIAA, anti-sigma F f 99.6 4.3E-16 1.5E-20 137.4 8.9 108 502-622 8-115 (117)
12 1sbo_A Putative anti-sigma fac 99.6 1.7E-15 5.7E-20 131.9 10.6 101 502-614 10-110 (110)
13 3zxn_A RSBS, anti-sigma-factor 99.5 7.3E-14 2.5E-18 124.1 12.4 109 505-625 12-121 (123)
14 3oiz_A Antisigma-factor antago 99.5 2E-15 7E-20 129.0 2.0 85 503-599 14-98 (99)
15 3agd_A Salt-tolerant glutamina 95.9 0.012 4.1E-07 61.4 7.0 83 504-586 324-445 (456)
16 3bl4_A Uncharacterized protein 92.5 0.12 4.1E-06 44.9 4.6 102 503-619 18-122 (124)
17 3qe7_A Uracil permease; uracil 89.0 4 0.00014 43.3 13.3 113 69-198 228-351 (429)
18 2q3l_A Uncharacterized protein 81.1 2.9 9.8E-05 36.1 6.3 106 503-618 18-125 (126)
19 2csu_A 457AA long hypothetical 67.4 28 0.00096 37.0 11.0 88 518-623 351-446 (457)
20 3pdw_A Uncharacterized hydrola 64.5 17 0.00058 34.9 8.0 55 544-599 5-65 (266)
21 2pr7_A Haloacid dehalogenase/e 58.2 17 0.00059 30.4 6.1 58 545-602 2-61 (137)
22 2yxb_A Coenzyme B12-dependent 55.6 47 0.0016 29.6 8.7 75 544-626 69-147 (161)
23 3dcm_X AdoMet, uncharacterized 52.3 25 0.00085 32.6 6.3 57 566-622 31-102 (192)
24 3qgm_A P-nitrophenyl phosphata 45.2 31 0.001 33.0 6.2 56 544-599 7-67 (268)
25 3ghf_A Septum site-determining 44.7 92 0.0031 26.3 8.3 80 505-599 16-98 (120)
26 2ook_A Hypothetical protein; s 44.0 1.1 3.7E-05 39.0 -4.2 105 503-619 18-126 (127)
27 3gt7_A Sensor protein; structu 43.7 64 0.0022 27.6 7.6 73 544-619 51-125 (154)
28 3n07_A 3-deoxy-D-manno-octulos 43.6 22 0.00076 32.8 4.6 75 545-623 25-113 (195)
29 2fp4_B Succinyl-COA ligase [GD 43.5 83 0.0028 32.6 9.4 87 518-622 300-392 (395)
30 3viv_A 441AA long hypothetical 42.4 37 0.0013 32.4 6.0 66 502-581 6-71 (230)
31 3kht_A Response regulator; PSI 42.2 41 0.0014 28.3 5.9 78 543-623 50-130 (144)
32 3nvb_A Uncharacterized protein 41.8 1.6E+02 0.0056 30.2 11.3 53 543-595 220-292 (387)
33 3rst_A Signal peptide peptidas 41.1 85 0.0029 29.9 8.5 68 504-581 3-83 (240)
34 3epr_A Hydrolase, haloacid deh 39.4 28 0.00094 33.4 4.8 56 544-599 4-64 (264)
35 3grc_A Sensor protein, kinase; 39.1 66 0.0023 26.7 6.8 58 544-604 50-110 (140)
36 3ib6_A Uncharacterized protein 39.1 29 0.00099 31.4 4.6 58 545-602 3-80 (189)
37 2qv0_A Protein MRKE; structura 38.6 81 0.0028 26.2 7.3 74 544-622 55-128 (143)
38 3ij5_A 3-deoxy-D-manno-octulos 38.3 73 0.0025 29.6 7.4 74 544-623 48-137 (211)
39 3hv2_A Response regulator/HD d 38.3 80 0.0027 26.8 7.3 70 544-618 58-130 (153)
40 3cnb_A DNA-binding response re 37.2 97 0.0033 25.5 7.6 58 544-604 54-113 (143)
41 2i33_A Acid phosphatase; HAD s 36.1 33 0.0011 33.3 4.7 56 543-599 57-144 (258)
42 2wfb_A Putative uncharacterize 35.4 54 0.0018 27.4 5.4 54 568-624 58-113 (120)
43 3dmy_A Protein FDRA; predicted 34.3 1.1E+02 0.0038 32.5 8.7 97 514-627 307-417 (480)
44 3n1u_A Hydrolase, HAD superfam 32.0 22 0.00077 32.5 2.6 75 544-622 18-106 (191)
45 1mvo_A PHOP response regulator 31.1 71 0.0024 26.3 5.6 82 545-631 48-131 (136)
46 1eo1_A Hypothetical protein MT 30.8 90 0.0031 26.1 6.1 56 568-626 56-112 (124)
47 2qxy_A Response regulator; reg 30.8 95 0.0033 25.7 6.4 55 544-604 48-104 (142)
48 3mm4_A Histidine kinase homolo 29.7 3.1E+02 0.011 24.6 10.5 73 544-621 119-196 (206)
49 1zjj_A Hypothetical protein PH 29.4 45 0.0015 31.8 4.4 72 546-619 2-78 (263)
50 2yx6_A Hypothetical protein PH 29.2 88 0.003 26.1 5.7 53 568-623 54-107 (121)
51 1ccw_A Protein (glutamate muta 29.2 2.3E+02 0.0078 24.1 8.6 95 504-622 30-134 (137)
52 2nu8_B SCS-beta, succinyl-COA 29.1 2E+02 0.0069 29.5 9.5 87 518-622 293-385 (388)
53 2oyc_A PLP phosphatase, pyrido 29.1 76 0.0026 31.0 6.2 55 545-599 21-80 (306)
54 3hdg_A Uncharacterized protein 28.6 67 0.0023 26.5 4.9 71 545-620 52-124 (137)
55 3jte_A Response regulator rece 28.3 1.4E+02 0.0049 24.6 7.2 71 543-618 48-120 (143)
56 3kc2_A Uncharacterized protein 28.3 43 0.0015 34.2 4.1 65 544-610 12-82 (352)
57 2gmw_A D,D-heptose 1,7-bisphos 28.1 45 0.0016 30.7 4.0 56 544-599 24-105 (211)
58 2zay_A Response regulator rece 27.5 1.1E+02 0.0038 25.5 6.3 71 545-618 53-125 (147)
59 2iz6_A Molybdenum cofactor car 27.1 77 0.0026 28.8 5.2 57 562-623 117-173 (176)
60 3l8h_A Putative haloacid dehal 26.1 1.1E+02 0.0037 26.8 6.2 57 546-602 2-87 (179)
61 2hx1_A Predicted sugar phospha 25.9 60 0.0021 31.3 4.7 73 545-619 14-92 (284)
62 1rdu_A Conserved hypothetical 25.7 69 0.0024 26.5 4.4 53 569-624 54-107 (116)
63 3t6k_A Response regulator rece 25.6 2.3E+02 0.008 23.1 8.0 57 544-603 48-106 (136)
64 2re2_A Uncharacterized protein 25.4 1.1E+02 0.0037 26.3 5.7 51 568-622 70-121 (136)
65 1o13_A Probable NIFB protein; 24.3 87 0.003 26.9 4.8 50 568-620 67-117 (136)
66 3ewi_A N-acylneuraminate cytid 23.7 2.4E+02 0.0083 24.9 8.0 74 543-622 7-95 (168)
67 3lte_A Response regulator; str 23.5 2.2E+02 0.0075 22.9 7.3 58 544-604 50-108 (132)
68 4gib_A Beta-phosphoglucomutase 22.4 78 0.0027 29.8 4.6 37 566-602 121-157 (250)
69 3cg0_A Response regulator rece 20.9 2.4E+02 0.0082 22.9 7.1 54 545-603 55-110 (140)
70 1vjr_A 4-nitrophenylphosphatas 20.8 53 0.0018 31.3 3.0 57 543-599 15-76 (271)
71 3cg4_A Response regulator rece 20.7 65 0.0022 26.8 3.3 76 544-622 51-128 (142)
72 2xij_A Methylmalonyl-COA mutas 20.6 2E+02 0.0068 32.4 7.9 73 544-624 655-731 (762)
73 3cz5_A Two-component response 20.4 2.3E+02 0.0078 23.7 7.0 56 544-604 51-108 (153)
74 3hzh_A Chemotaxis response reg 20.2 1.6E+02 0.0054 25.0 5.9 55 544-603 83-139 (157)
75 3c3m_A Response regulator rece 20.1 1.9E+02 0.0066 23.7 6.3 56 544-602 47-104 (138)
76 4e7p_A Response regulator; DNA 20.1 2.2E+02 0.0074 23.8 6.7 75 543-625 65-141 (150)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.98 E-value=2.8e-30 Score=277.70 Aligned_cols=344 Identities=13% Similarity=0.107 Sum_probs=259.9
Q ss_pred hhhhhHHHHHHHHHHHhchHhHHHHHhCCCccchhhhhhhhhHhhhhccCCc-ccccchhH-HHHHHHHHHhhccCCCCC
Q 006663 64 LLRYDVLAGITITSLAIPQGISYAKLASIPPIIGLYSSFVPPLVYAVFGSSK-HLAVGTVA-ACSLLIADTIGQKVPPKK 141 (636)
Q Consensus 64 ~l~~D~~aGlt~~~~~iPq~~aya~laglp~~~GL~s~~i~~lv~~~~G~s~-~~~~Gp~a-~~al~~~~~v~~~~~~~~ 141 (636)
.+++++++|+...+.+..-.++--.+-|+||..+++++.++++++.+++++| +...|++. ..+.+.. +.. .
T Consensus 13 ~~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~----- 85 (429)
T 3qe7_A 13 PLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-L----- 85 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-G-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-c-----
Confidence 4689999999988744333333333449999999999999999999986555 34468743 2333322 221 1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHh--hhh--hhhhccchhHHHHHhhHHHHHHHHhhhhhhhCccccCCCCcHHHHHH
Q 006663 142 DPTLYLHLVFTATFFTGIFQTALGFL--RLG--ILVDFLSHSTITGFMGGTAIIICLQQLKGLFGLKHFTTKTDVVSVLH 217 (636)
Q Consensus 142 ~~~~~~~~~~~~~~l~Gv~~lllg~~--rlg--~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~ 217 (636)
.++.+.++.+++|++++++|++ |+| ++.|++|+.|++.+++.+|+.++..+++...|... ..
T Consensus 86 ----g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~---~~------- 151 (429)
T 3qe7_A 86 ----GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA---EG------- 151 (429)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB---TT-------
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC---CC-------
Confidence 2677899999999999999998 775 89999999998889999999999999987543211 01
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHHHHHHHhhhcCCcccccccchhhHHHHHHHHHHHHhhccccCeeeeccCC-CCCCCC
Q 006663 218 AVFSNRKEWRWESAVIGISFLIFLQFTRYLKNRKPKLFWVSAMAPMVTVVVGCLFAYFAHAEKHGIQIVGDLR-KGINPP 296 (636)
Q Consensus 218 ~~~~~~~~~~~~~~~lg~~~l~~ll~~~~~~~~~~~~~~~~~~~~li~vi~~t~~~~~~~~~~~~v~~~g~ip-~g~p~~ 296 (636)
+..++.++.++++++++++++.++.|++.+. ++.|+++++++++++.++..+ .+.+++.| .++|.+
T Consensus 152 ------~~~~~~~~~la~~tl~iii~~~~~~kg~~~~-----~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~~ 218 (429)
T 3qe7_A 152 ------QTPDSKTIIISITTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPTL 218 (429)
T ss_dssp ------BCCCHHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCCC
T ss_pred ------ccccHHHHHHHHHHHHHHHHHHHHhcccchh-----hHHHHHHHHHHHHHHHhcCCC--cccccccccccccCC
Confidence 1246778899999999988887666655432 378999999999999988632 22233333 345544
Q ss_pred CCCcCccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----ccCchhHHHHHhHHHhHhhhcccccCCcccchh
Q 006663 297 SIGYLNFKSEYLTVTVKAGIITALIALAEGIAIARSFAIMQNE----QIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKT 372 (636)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~----~~~~n~eL~a~G~aNi~~slfGg~p~~~s~srS 372 (636)
..| +|++. .+...+.++++.++|+++..++.++..++ +.+.|||+.++|++|+++|+||++|.|++..++
T Consensus 219 ~~P--~f~~~----~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~ 292 (429)
T 3qe7_A 219 YTP--RFEWF----AILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENI 292 (429)
T ss_dssp CCC--CCCHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHH
T ss_pred CCC--cccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhH
Confidence 444 45543 33344667889999999998888877664 447899999999999999999999999877777
Q ss_pred HHhhhcCCCCchhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHhhcCCHHHHHHH--hcCCcc---hhhHHHH
Q 006663 373 AVNFNAGCKTAMSNVVMSFCMMLVLLF--LAPLFSYTPLVALSAIIMSAMFGLINYEEAILL--FKVDKL---DFSICMA 445 (636)
Q Consensus 373 ~~~~~~Ga~T~la~i~~~~~~ll~~~~--l~~ll~~IP~~vLa~ili~~~~~li~~~~~~~l--~~~~~~---d~~v~~~ 445 (636)
+++..+|++||++.+++|++++++.++ ++++++.||.+++||+.+ +.++++...+++.+ .|.+.. +..+..+
T Consensus 293 g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l-~lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~ 371 (429)
T 3qe7_A 293 GVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSV 371 (429)
T ss_dssp HHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Confidence 888899999999999999998877654 678999999999999776 69999989999888 777743 4444444
Q ss_pred HHH
Q 006663 446 AFL 448 (636)
Q Consensus 446 t~~ 448 (636)
++.
T Consensus 372 ~l~ 374 (429)
T 3qe7_A 372 ILI 374 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.91 E-value=1.6e-24 Score=199.09 Aligned_cols=139 Identities=26% Similarity=0.489 Sum_probs=123.1
Q ss_pred cccccccccccCCCccccccccccccCCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCC
Q 006663 476 RPATCKLGKISDSNLYLDTEQYQHAQGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGV 555 (636)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V 555 (636)
||++.++|++|+++.|++++++++.++.+++.+++++|+|+|+|+++|++++.+.++..+ .++.+.+||||++|
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~------~~~~~~vvlDls~v 74 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNG------SENIHTVILDFTQV 74 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSCHHHHHHHHHHHC-----------------CCSEEEEECTTC
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCCeEechHHHHHHHHHHHHccCC------CCCceEEEEECCCC
Confidence 689999999999999999999999999999999999999999999999999988764310 13478999999999
Q ss_pred CccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccC-CcccccCHHHHHHHHHH
Q 006663 556 STIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIG-KDSVFLSIEDAIDACRF 620 (636)
Q Consensus 556 ~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~-~~~if~t~~~Al~~~~~ 620 (636)
+||||||+++|.++.++++++|++++++++++++++.|+++|+.+.++ ++++|+|++||+++++.
T Consensus 75 ~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~ 140 (143)
T 3llo_A 75 NFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQV 140 (143)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHTSS
T ss_pred ccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccCccceEECcHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999887 78999999999998764
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.87 E-value=1.2e-22 Score=183.37 Aligned_cols=128 Identities=17% Similarity=0.336 Sum_probs=118.9
Q ss_pred CCCccccccccccccCCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHH
Q 006663 487 DSNLYLDTEQYQHAQGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAF 566 (636)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L 566 (636)
+++.|++++++++.+..+++.+++++|+|+|+|+++|++++.+. . ++.+.+|+||++|++|||||+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~-~----------~~~~~vvlDls~v~~iDssgl~~L 70 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSI-Q----------ETPQILILRLKWVPFMDITGIQTL 70 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSSCCHHHHHHHHHHHHHS-S----------SCCSEEEEECTTCCCCCHHHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeeeEeehhHHHHHHHHHHh-c----------cCCCEEEEECCCCCcccHHHHHHH
Confidence 56789999999999999999999999999999999999998652 1 236899999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhccc
Q 006663 567 REILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQKE 625 (636)
Q Consensus 567 ~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~~ 625 (636)
.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||++++++.+..+
T Consensus 71 ~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~~~~~~ 129 (130)
T 4dgh_A 71 EEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ 129 (130)
T ss_dssp HHHHHHHHTTTCEEEEECCCHHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcccccCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999887654
No 4
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.86 E-value=3.1e-22 Score=181.97 Aligned_cols=130 Identities=18% Similarity=0.291 Sum_probs=111.5
Q ss_pred cccCCCccccccccccccCCC-cEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHH
Q 006663 484 KISDSNLYLDTEQYQHAQGFP-GILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTG 562 (636)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~-~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssg 562 (636)
++|+++.|++++++ +.++.| ++.+++++|+|||+|+++|++++.+. . ++.+.+|+||++|++|||||
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~L~f~~a~~~~~~l~~~-~----------~~~~~vvlDls~v~~iDssg 69 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGPFFFGVADRLKGVLDVI-E----------ETPKVFILRMRRVPVIDATG 69 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSSBSHHHHHHHTTGGGGC-S----------SCCSEEEEECTTCSCBCHHH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeeceEEehhHHHHHHHHHHh-c----------CCCcEEEEEcCCCCccCHHH
Confidence 57899999999999 666666 99999999999999999999988652 1 34689999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhccc
Q 006663 563 IAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQKE 625 (636)
Q Consensus 563 l~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~~ 625 (636)
+++|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||++++++.+...
T Consensus 70 l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 70 MHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVETA 132 (135)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999876543
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.86 E-value=6.4e-22 Score=178.68 Aligned_cols=127 Identities=22% Similarity=0.473 Sum_probs=115.0
Q ss_pred cccccccccccCCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHH
Q 006663 491 YLDTEQYQHAQGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREIL 570 (636)
Q Consensus 491 ~~~~~~~~~~~~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~ 570 (636)
|++++++|++++.+++.+++++|+|+|+|+++|++++.+.+++. +++.+.|||||++|+||||||+++|.++.
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~-------~~~~~~vvlDls~v~~iDssgl~~L~~~~ 73 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQD-------PGQVEWFVLNAESNVEVDLTALDALDQLR 73 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSCCBTTTHHHHHHHHHHHTTSS-------SSCCEEEEEECSCCSSSBCSTTTHHHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCceEechHHHHHHHHHHHHhcC-------CCCceEEEEECCCCChhhHHHHHHHHHHH
Confidence 67888999999999999999999999999999999998865431 01478999999999999999999999999
Q ss_pred HHHHhCCCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhcc
Q 006663 571 RILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQK 624 (636)
Q Consensus 571 ~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~ 624 (636)
++++++|++++++++++++++.|+++|+.+.++++++|+|++||+++++.+.+.
T Consensus 74 ~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~~ 127 (130)
T 2kln_A 74 TELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLPTAVQAFRRRHHH 127 (130)
T ss_dssp HHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTTC---
T ss_pred HHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcceeECCHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999987654
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.76 E-value=4.6e-19 Score=156.94 Aligned_cols=105 Identities=17% Similarity=0.303 Sum_probs=96.7
Q ss_pred cCCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEE
Q 006663 501 QGFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKM 580 (636)
Q Consensus 501 ~~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l 580 (636)
+..+++.++|++|+|||+|++++++++.+.. ++.+.+|+||++|++|||||+++|.++.+++++ |+++
T Consensus 13 ~~~~~v~v~~l~G~L~f~~a~~l~~~l~~~~-----------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l 80 (118)
T 3ny7_A 13 DVPDDVLVLRVIGPLFFAAAEGLFTDLESRL-----------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCEL 80 (118)
T ss_dssp CCCTTEEEEEEESCBCHHHHHHHHHHHHTTC-----------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEE
T ss_pred CCCCCEEEEEEeceeEehhHHHHHHHHHHhc-----------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEE
Confidence 3457899999999999999999999987642 236899999999999999999999999999999 9999
Q ss_pred EEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHH
Q 006663 581 KLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDA 617 (636)
Q Consensus 581 ~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~ 617 (636)
+++++++++++.|+++|+.+.++++++|+|++||++.
T Consensus 81 ~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 81 RVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp EEECCCHHHHHHHHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred EEecCCHHHHHHHHHcCChhhcChhhhcCCHHHHHhh
Confidence 9999999999999999999999999999999999864
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.68 E-value=3.2e-17 Score=146.61 Aligned_cols=108 Identities=18% Similarity=0.326 Sum_probs=98.1
Q ss_pred cccCCCcEEEEEecCceeeechHHHHHHHHH-HHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCC
Q 006663 499 HAQGFPGILILQLGSPIYFANCNYIRERVLR-WIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKS 577 (636)
Q Consensus 499 ~~~~~~~v~ivrl~g~L~f~na~~~~~~l~~-~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g 577 (636)
..+..+++.+++++|+|+|+|++.|++.+.+ .+++ +.+.+++||++|+||||||+++|.++.++++++|
T Consensus 15 ~~~~~~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~----------~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g 84 (125)
T 2ka5_A 15 PYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNK----------GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSG 84 (125)
T ss_dssp CEEECSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT----------TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cceeeCCEEEEEEecEEecccHHHHHHHHHHHHhhC----------CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcC
Confidence 3455678999999999999999999999987 5432 3678999999999999999999999999999999
Q ss_pred CEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 578 IKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 578 ~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
+++.++++++++++.|+++|+.+.+ .+|+|++||+++++
T Consensus 85 ~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~s~~~Al~~~~ 123 (125)
T 2ka5_A 85 GFFALVSPNEKVERVLSLTNLDRIV---KIYDTISEAMEEVR 123 (125)
T ss_dssp CEEEEECCCHHHHHHHHHTTSTTTS---EEESSHHHHHTTTT
T ss_pred CEEEEEeCCHHHHHHHHHcCCCceE---EecCCHHHHHHHhh
Confidence 9999999999999999999999988 79999999997654
No 8
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.66 E-value=1.4e-16 Score=141.64 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=96.6
Q ss_pred cCCCcEEEEEecCce---eeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHh-C
Q 006663 501 QGFPGILILQLGSPI---YFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEA-K 576 (636)
Q Consensus 501 ~~~~~v~ivrl~g~L---~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~-~ 576 (636)
++.+++.+++++|++ +|.|+++|++++.+.+.+ .+.+.+++||++|+||||+|+++|..+.+++++ +
T Consensus 10 ~~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~---------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~ 80 (121)
T 3t6o_A 10 THEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQG---------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQ 80 (121)
T ss_dssp EEETTEEEEECCGGGSEECHHHHHHHHHHHHHTTCC---------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTST
T ss_pred EEECCEEEEEEccccccCchhhHHHHHHHHHHHHhh---------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhc
Confidence 345789999999998 899999999998775532 246899999999999999999999999999999 9
Q ss_pred CCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHH
Q 006663 577 SIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDAC 618 (636)
Q Consensus 577 g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~ 618 (636)
|+++.++++++++++.|+++|+++.+ .+|+|++||++.+
T Consensus 81 g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~ 119 (121)
T 3t6o_A 81 QGVFALCSVSPYCVEVLQVTHIDEVW---PRYSTKQEALLAM 119 (121)
T ss_dssp TCEEEEESCCHHHHHHHTTCSGGGGS---CEESSHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHhCcccee---cccCCHHHHHHHh
Confidence 99999999999999999999999999 7999999999875
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.64 E-value=2.2e-16 Score=138.90 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=97.5
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
+.+++.+++++|+|+|.|++.+++.+.+.+++ .+.+.+++||++|+++||+|+++|.++.++++++|+++.
T Consensus 9 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~---------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 79 (116)
T 1th8_B 9 VKQDVLIVRLSGELDHHTAEELREQVTDVLEN---------RAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMV 79 (116)
T ss_dssp EETTEEEEEEEEEESHHHHHHHHHHHHHHHHS---------SCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EECCEEEEEEeeeeccccHHHHHHHHHHHHhc---------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEE
Confidence 34678999999999999999999999887653 125789999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 582 LINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 582 l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
++++++++++.|+++|+.+.+ ++|+|++||+++++
T Consensus 80 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 114 (116)
T 1th8_B 80 VCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALG 114 (116)
T ss_dssp EESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTT
T ss_pred EEeCCHHHHHHHHHhCCceeE---EEeCCHHHHHHhcc
Confidence 999999999999999999988 89999999998865
No 10
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.64 E-value=1.9e-16 Score=139.85 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=95.9
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
+.+++.+++++|+|+|.|++.+++.+.+.+++ . . .+++||++|+||||+|+++|.++.++++++|+++.
T Consensus 10 ~~~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~---------~-~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 78 (117)
T 4hyl_A 10 TEQGIDIITLHGHLDTRSSPAVQAAVLPRVTA---------K-G-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALV 78 (117)
T ss_dssp EETTEEEEEEEEEECSSSHHHHHHHHGGGCCT---------T-C-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EECCEEEEEEEeEEcchhHHHHHHHHHHHHcc---------C-C-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEE
Confidence 34688999999999999999999998875432 1 2 99999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 582 LINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 582 l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
++++++++++.|+++|+.+.+ .+|+|++||++.+..
T Consensus 79 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~ 114 (117)
T 4hyl_A 79 LVGVSEEIRDTMEITGFWNFF---TACASMDEALRILGS 114 (117)
T ss_dssp EECCCHHHHHHHHHHTCGGGC---EEESCHHHHHHHHCC
T ss_pred EEeCCHHHHHHHHHhCcccee---eecCCHHHHHHHhcc
Confidence 999999999999999999999 799999999988753
No 11
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.63 E-value=4.3e-16 Score=137.43 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=96.7
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
+.+++.+++++|+++|.|++.|++.+.+.+++ ++.+.+++||++|+|+||+|+++|.++.++++++|+++.
T Consensus 8 ~~~~~~vl~l~G~l~~~~~~~l~~~l~~~~~~---------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 78 (117)
T 1h4x_A 8 VTRETVVIRLFGELDHHAVEQIRAKISTAIFQ---------GAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTI 78 (117)
T ss_dssp EETTEEEEEEEEEECHHHHHHHHHHHHHHHHH---------TSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEE
T ss_pred eeCCEEEEEEEeEEchhhHHHHHHHHHHHHhc---------CCCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEE
Confidence 34678999999999999999999999987643 235789999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHh
Q 006663 582 LINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 582 l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
++++++++++.|+.+|+.+.+ +|+|.+||+++++++.
T Consensus 79 l~~~~~~v~~~l~~~gl~~~~----i~~~~~~Al~~~~~~~ 115 (117)
T 1h4x_A 79 LLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRVRGIV 115 (117)
T ss_dssp EESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHTC---
T ss_pred EEeCCHHHHHHHHHhCCceEE----EeCCHHHHHHHHHHhh
Confidence 999999999999999999987 8999999999887654
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.62 E-value=1.7e-15 Score=131.90 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=92.6
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
+.+++.+++++|+++|.|++.+++.+.+.+++. +.+.+++||++|+++||+|+++|.++.++++++|+++.
T Consensus 10 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~---------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 80 (110)
T 1sbo_A 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTT---------SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFI 80 (110)
T ss_dssp ECSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC---------SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EeCCEEEEEEeeEEccccHHHHHHHHHHHHhcC---------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEE
Confidence 356889999999999999999999998876542 24789999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCccccCCcccccCHHHH
Q 006663 582 LINPRIGVMDKMILSKFIDVIGKDSVFLSIEDA 614 (636)
Q Consensus 582 l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~A 614 (636)
++++++++++.|+++|+.+.+ .+|+|++||
T Consensus 81 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~A 110 (110)
T 1sbo_A 81 LSSLKESISRILKLTHLDKIF---KITDTVEEA 110 (110)
T ss_dssp EESCCHHHHHHHHHTTCGGGS---CBCSSGGGC
T ss_pred EEeCCHHHHHHHHHhCcccee---eccCCcccC
Confidence 999999999999999999998 699999886
No 13
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.52 E-value=7.3e-14 Score=124.14 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=98.1
Q ss_pred cEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEc
Q 006663 505 GILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLIN 584 (636)
Q Consensus 505 ~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~ 584 (636)
++.++++.|+||..+++++++++.+.+.+ .+.+++|+|+++|+++||+|++.|.++.+.++..|++++++|
T Consensus 12 ~vlvv~l~G~lD~~~a~~l~~~ll~~i~~---------~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~G 82 (123)
T 3zxn_A 12 DYWVVAIEETLHDQSVIQFKEELLHNITG---------VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTG 82 (123)
T ss_dssp TEEEEECCCCC-CHHHHHHHHHHHHHHTS---------SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CEEEEEEeEeeCHHHHHHHHHHHHHHHHh---------cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 58999999999999999999999987754 347899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhcCCc-cccCCcccccCHHHHHHHHHHHhccc
Q 006663 585 PRIGVMDKMILSKFI-DVIGKDSVFLSIEDAIDACRFSLQKE 625 (636)
Q Consensus 585 ~~~~v~~~l~~~gl~-~~~~~~~if~t~~~Al~~~~~~~~~~ 625 (636)
++|++.+.|..+|+. +.+ ++|.|+++|++.++...+..
T Consensus 83 i~p~va~~l~~~G~~l~~i---~~~~~l~~Al~~l~~~~~~~ 121 (123)
T 3zxn_A 83 IKPAVAITLTEMGLDLRGM---ATALNLQKGLDKLKNLARME 121 (123)
T ss_dssp CCHHHHHHHHHTTCCSTTS---EEESSHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHhCCCccce---EEECCHHHHHHHHHHhhhhh
Confidence 999999999999996 566 79999999999988765543
No 14
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.52 E-value=2e-15 Score=128.95 Aligned_cols=85 Identities=8% Similarity=0.123 Sum_probs=72.9
Q ss_pred CCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEE
Q 006663 503 FPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKL 582 (636)
Q Consensus 503 ~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l 582 (636)
.+++.+++++|+|||+|+++|++++.. . ++.+.+|+||++|+||||||+++|.++.++++++|+++.+
T Consensus 14 ~g~~~v~~l~G~L~f~~a~~~~~~l~~---~---------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 81 (99)
T 3oiz_A 14 DGRERIYRVEGQLFYASVEDFMAAFDF---R---------EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRI 81 (99)
T ss_dssp TSSEEEEEEEEEECGGGHHHHHHTCCT---T---------SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEEeeEEehhhHHHHHHHHhh---c---------CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 346899999999999999999998763 1 3468999999999999999999999999999999999999
Q ss_pred EcCChhHHHHHHhcCCc
Q 006663 583 INPRIGVMDKMILSKFI 599 (636)
Q Consensus 583 ~~~~~~v~~~l~~~gl~ 599 (636)
++++++++++|+++|++
T Consensus 82 ~~~~~~v~~~l~~~g~~ 98 (99)
T 3oiz_A 82 VGMNEASETMVDRLAIH 98 (99)
T ss_dssp ESHHHHHTTCC------
T ss_pred EcCCHHHHHHHHHhcCC
Confidence 99999999999999975
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=95.87 E-value=0.012 Score=61.44 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=66.9
Q ss_pred CcEEEEEecCceeeechHHHHHHHHHHHHhh-------------------hc--------------------ccCCCCCC
Q 006663 504 PGILILQLGSPIYFANCNYIRERVLRWIRDE-------------------QV--------------------LSNSKPDV 544 (636)
Q Consensus 504 ~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~-------------------~~--------------------~~~~~~~~ 544 (636)
+++.+++++|.|.|+.++.+.+++.+..... .+ .++-+..+
T Consensus 324 ~~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (456)
T 3agd_A 324 GDRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGP 403 (456)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCCC
T ss_pred CcEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 4699999999999999999988887640000 00 01223456
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR 586 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~ 586 (636)
.+.||||+++|+.+|-.|.+++.+..++++..|.++++..+.
T Consensus 404 ~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 445 (456)
T 3agd_A 404 IRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE 445 (456)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 789999999999999999999999999999999999999876
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=92.51 E-value=0.12 Score=44.95 Aligned_cols=102 Identities=19% Similarity=0.093 Sum_probs=69.8
Q ss_pred CCcEEEEEecC--ceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEE
Q 006663 503 FPGILILQLGS--PIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKM 580 (636)
Q Consensus 503 ~~~v~ivrl~g--~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l 580 (636)
.+|+..+++.+ +++-..+..+-.++++. .+ .....+++|++....++..+-+.+.+-. .=-.+
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l-~~---------~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~a~ 82 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQL-CG---------DDRHPMLVDMATTADVSRGARAVFGRPC-----QASRI 82 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHHH-HT---------TCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEEEE
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHHH-hC---------CCceEEEEEcccccCCCHHHHHHHhCcc-----ceeEE
Confidence 36899999999 67877888877777763 32 2358999999999889988877776611 12357
Q ss_pred EEEcCChhHHHHHHh-cCCccccCCcccccCHHHHHHHHH
Q 006663 581 KLINPRIGVMDKMIL-SKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 581 ~l~~~~~~v~~~l~~-~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
.+.+.++-.+-+-+. .++...-.+.++|.|.+||++|+.
T Consensus 83 Al~g~s~~~r~ia~~~l~~~~~~~pt~fF~te~eA~aWL~ 122 (124)
T 3bl4_A 83 ALLGSSPVDRVLANFFLGINAVPCPTKFFTSERDALTWLA 122 (124)
T ss_dssp EEECSSGGGHHHHHHHHHHHCCSSCEEEESCHHHHHHHHT
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCCCceeeCCHHHHHHHHH
Confidence 777777644332111 122222233489999999999975
No 17
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=88.99 E-value=4 Score=43.27 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhchHhH----HHHHhCCCc------cchhhhhhhhhHhhhhccCCcccccchhHHHHHHHHHHhhccCC
Q 006663 69 VLAGITITSLAIPQGIS----YAKLASIPP------IIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLIADTIGQKVP 138 (636)
Q Consensus 69 ~~aGlt~~~~~iPq~~a----ya~laglp~------~~GL~s~~i~~lv~~~~G~s~~~~~Gp~a~~al~~~~~v~~~~~ 138 (636)
+..=++.+++..-++++ .+..+|-+. .-++.+-.+++++.++||+.+.-..+ ..+-+.+.. ...
T Consensus 228 i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~---en~g~i~~t--g~~- 301 (429)
T 3qe7_A 228 ILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYG---ENIGVMAIT--RVY- 301 (429)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECH---HHHHHHHHH--TBC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHH---HhHHHHHhc--CCc-
Confidence 33445556665556554 334566332 35899999999999999998855432 222222111 110
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhccchhHHHHHhhHHHHHHHHhhhh
Q 006663 139 PKKDPTLYLHLVFTATFFTGIFQTALGFL-RLGILVDFLSHSTITGFMGGTAIIICLQQLK 198 (636)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~Gv~~lllg~~-rlg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~ 198 (636)
. . .....+|++.+++|++ +++.++..+|.||++|.....=-.+..+.++
T Consensus 302 -----s---r---~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~ 351 (429)
T 3qe7_A 302 -----S---T---WVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIR 351 (429)
T ss_dssp -----C---H---HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----c---h---HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1 1346788999999987 5889999999999999654332233344444
No 18
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=81.10 E-value=2.9 Score=36.14 Aligned_cols=106 Identities=9% Similarity=0.044 Sum_probs=68.9
Q ss_pred CCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHH--HHHHhCCCEE
Q 006663 503 FPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREIL--RILEAKSIKM 580 (636)
Q Consensus 503 ~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~--~~~~~~g~~l 580 (636)
.+++..+++.|.|+-..-+++...+++.+++.+ .+.-.+.+|++..+..+..+ +..++. ....++=-++
T Consensus 18 ~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~-------~~~i~ll~~~~~f~G~~~~a--~~~d~k~~~~h~~~~~Ri 88 (126)
T 2q3l_A 18 DDFYLAFKAVGKLTHEDYEQMTPLLESALAGIK-------TPEIVALIDITELDGLSLHA--AWDDLKLGLKHGKEFKRV 88 (126)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCC-------SSCEEEEEEEEEEEEECHHH--HHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCC-------CceEEEEEEecCCCCCCHHH--HHHHHHhhhhHHhcCCEE
Confidence 456899999999988777777777777665431 11146777988777777444 233332 2222334588
Q ss_pred EEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHH
Q 006663 581 KLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDAC 618 (636)
Q Consensus 581 ~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~ 618 (636)
.+++-++=++...+..+..-. ++-+.|.+.++|.+|+
T Consensus 89 AvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl 125 (126)
T 2q3l_A 89 AIIGQGELQEWATRVANWFTP-GEFKFFEDKRDALDWL 125 (126)
T ss_dssp EEECCSHHHHHHHHHHHHHCS-SEEEEESCHHHHHHHH
T ss_pred EEEcChHHHHHHHHHHhhccC-CceeccCCHHHHHHHh
Confidence 999887766666555543211 2347889999999986
No 19
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=67.37 E-value=28 Score=36.98 Aligned_cols=88 Identities=6% Similarity=-0.023 Sum_probs=56.6
Q ss_pred echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCc--c--ChHHHHHHHHHHHHHHhCCCEEEEEcC----ChhH
Q 006663 518 ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVST--I--DMTGIAAFREILRILEAKSIKMKLINP----RIGV 589 (636)
Q Consensus 518 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~--i--Dssgl~~L~~l~~~~~~~g~~l~l~~~----~~~v 589 (636)
++.+.+++.++..+++ +++..+++++..-.+ + |..+ +.+.+..++++ .+..++.+.+ .++.
T Consensus 351 a~~~~~~~al~~~l~d---------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~~~~g~~~~~~ 419 (457)
T 2csu_A 351 ARGEDYYRTAKLLLQD---------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAMFMAGYVSEKA 419 (457)
T ss_dssp CCHHHHHHHHHHHHHS---------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEEEECTTTTHHH
T ss_pred CCHHHHHHHHHHHhcC---------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEEeCCCcchHHH
Confidence 5667888888877665 457888888753323 3 3333 33444444443 5666766543 2457
Q ss_pred HHHHHhcCCccccCCcccccCHHHHHHHHHHHhc
Q 006663 590 MDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQ 623 (636)
Q Consensus 590 ~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~ 623 (636)
++.|+..|+ .+|+|.++|++.+....+
T Consensus 420 ~~~L~~~Gi-------p~~~spe~Av~al~~l~~ 446 (457)
T 2csu_A 420 KELLEKNGI-------PTYERPEDVASAAYALVE 446 (457)
T ss_dssp HHHHHTTTC-------CEESSHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-------CccCCHHHHHHHHHHHHH
Confidence 788888775 689999999988776544
No 20
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=64.45 E-value=17 Score=34.91 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=40.8
Q ss_pred CceEEEEEccCCCccChH-HHHHHHHHHHHHHhCCCEEEEE-----cCChhHHHHHHhcCCc
Q 006663 544 VIEHVLLDLSGVSTIDMT-GIAAFREILRILEAKSIKMKLI-----NPRIGVMDKMILSKFI 599 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDss-gl~~L~~l~~~~~~~g~~l~l~-----~~~~~v~~~l~~~gl~ 599 (636)
..+.|++|+.++= +|+. ...--.+..++++++|++++++ .....+.+.++..|+.
T Consensus 5 ~~kli~~DlDGTL-l~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTM-YNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CCSEEEEECSSST-TCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEeCcCce-EeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 3789999999874 4543 2334466778889999999999 3345677888888884
No 21
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=58.22 E-value=17 Score=30.39 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=40.6
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHHHhcCCcccc
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR--IGVMDKMILSKFIDVI 602 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~ 602 (636)
.+.+++|+.++=.=+..-..-..++.++++++|.++.++.-+ ..+.+.++..|+.+.+
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f 61 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVV 61 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSS
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhc
Confidence 478999998865333334455778888999999999887653 4456777777665544
No 22
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=55.56 E-value=47 Score=29.63 Aligned_cols=75 Identities=8% Similarity=0.080 Sum_probs=49.0
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCC---CEEEEEcCChh-HHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKS---IKMKLINPRIG-VMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g---~~l~l~~~~~~-v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
+.+.|.+-+... +-+..+.++.+++++.| +++++-|...+ -.+.++..|.+..++.+ .+.+++++.++
T Consensus 69 ~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~---~~~~~~~~~~~ 140 (161)
T 2yxb_A 69 DVDVIGVSILNG-----AHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPG---TSLGEIIEKVR 140 (161)
T ss_dssp TCSEEEEEESSS-----CHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTT---CCHHHHHHHHH
T ss_pred CCCEEEEEeech-----hhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCC---CCHHHHHHHHH
Confidence 467888765543 45677788888887764 67777775433 33457888886545322 25678888888
Q ss_pred HHhcccc
Q 006663 620 FSLQKEK 626 (636)
Q Consensus 620 ~~~~~~~ 626 (636)
+.+..++
T Consensus 141 ~~~~~~~ 147 (161)
T 2yxb_A 141 KLAEEKR 147 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7776544
No 23
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=52.30 E-value=25 Score=32.62 Aligned_cols=57 Identities=9% Similarity=-0.010 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCC-CEEEEEcCChhHHHHHHh--------cCC------ccccCCcccccCHHHHHHHHHHHh
Q 006663 566 FREILRILEAKS-IKMKLINPRIGVMDKMIL--------SKF------IDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 566 L~~l~~~~~~~g-~~l~l~~~~~~v~~~l~~--------~gl------~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
+-++.+.++..| .+++++++....++.-++ .|- .|.+..-++++|++||++.|+++.
T Consensus 31 ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~~~~~~ 102 (192)
T 3dcm_X 31 VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVE 102 (192)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHHHHhhc
Confidence 455788888888 589999998754432222 233 355566689999999999999643
No 24
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=45.16 E-value=31 Score=33.00 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=40.0
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----ChhHHHHHHhcCCc
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP-----RIGVMDKMILSKFI 599 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~ 599 (636)
..+.+++|+.++=.=+-.-+.--.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 7 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CCSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 368999999987443322222345677888899999999844 34677888888885
No 25
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=44.69 E-value=92 Score=26.29 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=54.0
Q ss_pred cEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCC-ccChHHHHHHHHHHHHHHhCCCEEE-E
Q 006663 505 GILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVS-TIDMTGIAAFREILRILEAKSIKMK-L 582 (636)
Q Consensus 505 ~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~-~iDssgl~~L~~l~~~~~~~g~~l~-l 582 (636)
+..++++.. .+-+.+++++.+.+++.++- =.-..||||++.+. ..| +..+.+.++++|..++ +
T Consensus 16 ~l~vl~l~~----~d~~~l~~~L~~ki~~aP~F-----F~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~vGV 80 (120)
T 3ghf_A 16 TLSVVHLHE----AEPEVIRQALEDKIAQAPAF-----LKHAPVVINVSGLESPVN------WPELHKIVTSTGLRIIGV 80 (120)
T ss_dssp CCEEEEEES----CCHHHHHHHHHHHHHHSHHH-----HTTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEEEE
T ss_pred eEEEEEeCC----CCHHHHHHHHHHHHHhChHh-----hCCCcEEEEccccCChHH------HHHHHHHHHHcCCEEEEE
Confidence 355666644 35577788887776654210 02468999999885 334 6677888999998875 4
Q ss_pred EcCChh-HHHHHHhcCCc
Q 006663 583 INPRIG-VMDKMILSKFI 599 (636)
Q Consensus 583 ~~~~~~-v~~~l~~~gl~ 599 (636)
.+.+++ .++..+..|+-
T Consensus 81 ~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 81 SGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp ESCCCHHHHHHHHHHTCC
T ss_pred eCCCcHHHHHHHHHCCCC
Confidence 555545 78888888884
No 26
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=43.96 E-value=1.1 Score=38.99 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=67.0
Q ss_pred CCcEEEEEecCceeeechHHHHHHHHHHHHh--hhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHH--hCCC
Q 006663 503 FPGILILQLGSPIYFANCNYIRERVLRWIRD--EQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILE--AKSI 578 (636)
Q Consensus 503 ~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~--~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~--~~g~ 578 (636)
.+++..+++.|.|+-..-+++...+++.+++ . ++++ +.+|++..+..+..++ ..++.-..+ ++=-
T Consensus 18 ~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~~~~--------~~i~-lL~~~~~f~G~~~~A~--~~d~k~~~~h~~~~~ 86 (127)
T 2ook_A 18 SVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQ--------PKVS-LFLDATELDGWDLRAA--WDDLKLGLKHKSEFE 86 (127)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCC--------SSCC-EEEEEEEEEEECTTCG--GGGCCCCCTTSCCEE
T ss_pred CCCEEEEEEeeeECHHHHHHHHHHHHHHHhhccC--------CCEE-EEEEccCCCCCCHHHH--HHHHHhhhhhHhcCC
Confidence 4568999999999987777888888877765 3 3455 8888887777774431 111110111 1123
Q ss_pred EEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 579 KMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 579 ~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
++.+++-++=++...+..+..-. ++-+.|++.++|.+|++
T Consensus 87 RiAvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl~ 126 (127)
T 2ook_A 87 RVAILGNKDWQEWAAKIGSWFIA-GEIKYFEDEDDALKWLR 126 (127)
T ss_dssp EEEEECCSSCCTTTTTGGGGCCE-EEEEEESCHHHHHHHHH
T ss_pred EEEEEcChHHHHHHHHHHhhCcC-CceEccCCHHHHHHHHh
Confidence 78888776655544444443211 23489999999999875
No 27
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=43.73 E-value=64 Score=27.60 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=41.6
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--ChhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP--RIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
++..|++|... =|..|++.+..+.+.-...+..+++... .++........|..+.+.+-.-...+.++++.+-
T Consensus 51 ~~dlii~D~~l---~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 125 (154)
T 3gt7_A 51 RPDLIISDVLM---PEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLL 125 (154)
T ss_dssp CCSEEEEESCC---SSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 47899999753 2455777776665533234666666553 3445555667888887744222233344444433
No 28
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=43.55 E-value=22 Score=32.81 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=51.1
Q ss_pred ceEEEEEccCCC-----ccChHHHHHHHHH-------HHHHHhCCCEEEEEcC--ChhHHHHHHhcCCccccCCcccccC
Q 006663 545 IEHVLLDLSGVS-----TIDMTGIAAFREI-------LRILEAKSIKMKLINP--RIGVMDKMILSKFIDVIGKDSVFLS 610 (636)
Q Consensus 545 ~~~vIlD~s~V~-----~iDssgl~~L~~l-------~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~t 610 (636)
.+.|++|+.++- +.+..+ ..+.++ .+.++++|+++.++.- ...+.+.++..|+.+.+.. ..+
T Consensus 25 ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~---~k~ 100 (195)
T 3n07_A 25 IKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG---QDD 100 (195)
T ss_dssp CCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS---CSS
T ss_pred CCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC---CCC
Confidence 789999998752 222222 222333 7888999999999864 4567899999999877632 255
Q ss_pred HHHHHHHHHHHhc
Q 006663 611 IEDAIDACRFSLQ 623 (636)
Q Consensus 611 ~~~Al~~~~~~~~ 623 (636)
-.++++.+.+++.
T Consensus 101 k~~~~~~~~~~~~ 113 (195)
T 3n07_A 101 KVQAYYDICQKLA 113 (195)
T ss_dssp HHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhC
Confidence 6677776666553
No 29
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=43.49 E-value=83 Score=32.60 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=56.0
Q ss_pred echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEc-cCCCccChHHHHHHHHHHHHHHhCCCEEE--EEcCCh-hHHHHH
Q 006663 518 ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDL-SGVSTIDMTGIAAFREILRILEAKSIKMK--LINPRI-GVMDKM 593 (636)
Q Consensus 518 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~-s~V~~iDssgl~~L~~l~~~~~~~g~~l~--l~~~~~-~v~~~l 593 (636)
++.+++++.++-..++ ++++.++++. .++...|-.+ +.+.+..+++. .++.++ +.+.+. +-++.|
T Consensus 300 a~~e~~~~al~~il~d---------~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~~L 368 (395)
T 2fp4_B 300 VKESQVYQAFKLLTAD---------PKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQNIL 368 (395)
T ss_dssp CCHHHHHHHHHHHHHC---------TTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC---------CCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHH
Confidence 4567777776665543 4578877765 6777777776 44445555542 455544 455554 366888
Q ss_pred HhcCCccccCCcccc--cCHHHHHHHHHHHh
Q 006663 594 ILSKFIDVIGKDSVF--LSIEDAIDACRFSL 622 (636)
Q Consensus 594 ~~~gl~~~~~~~~if--~t~~~Al~~~~~~~ 622 (636)
+.+|+ .+| +|.+||.+.+-...
T Consensus 369 ~~~gl-------~~~~~~~~~~Aa~~~v~~~ 392 (395)
T 2fp4_B 369 TNSGL-------PITSAVDLEDAAKKAVASV 392 (395)
T ss_dssp HHTCS-------CCEECSSHHHHHHHHHHTT
T ss_pred HHCCC-------ceEeCCCHHHHHHHHHHHh
Confidence 88885 455 99999998876543
No 30
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=42.38 E-value=37 Score=32.44 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=43.1
Q ss_pred CCCcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 006663 502 GFPGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMK 581 (636)
Q Consensus 502 ~~~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~ 581 (636)
..+.+.++.++|.++-..++.+.+.++++-+ ++.+.|+|....-.. | +....++++.+++....++
T Consensus 6 ~~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~----------~~~~~Ivl~inspGG-~---v~~~~~i~~~i~~~~~PVi 71 (230)
T 3viv_A 6 AKNIVYVAQIKGQITSYTYDQFDRYITIAEQ----------DNAEAIIIELDTPGG-R---ADAMMNIVQRIQQSKIPVI 71 (230)
T ss_dssp CCCEEEEEEEESCBCHHHHHHHHHHHHHHHH----------TTCSEEEEEEEBSCE-E---HHHHHHHHHHHHTCSSCEE
T ss_pred CCCeEEEEEEeCEECHHHHHHHHHHHHHHhc----------CCCCEEEEEEeCCCc-C---HHHHHHHHHHHHhCCCCEE
Confidence 3467999999999999999999988877532 236788876432211 1 2334456666666555543
No 31
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=42.23 E-value=41 Score=28.29 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=45.6
Q ss_pred CCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--ChhHHHHHHhcCCccccCCcc-cccCHHHHHHHHH
Q 006663 543 DVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP--RIGVMDKMILSKFIDVIGKDS-VFLSIEDAIDACR 619 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~-if~t~~~Al~~~~ 619 (636)
.++..+++|... =|..|++.+..+.+.-...+..+++... .++........|..+.+.+.. -...+.++++.+.
T Consensus 50 ~~~dlii~D~~l---~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 50 AKYDLIILDIGL---PIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp CCCSEEEECTTC---GGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC---CCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 346799999753 2556777777665532334566666553 345555666788888774433 3344445555444
Q ss_pred HHhc
Q 006663 620 FSLQ 623 (636)
Q Consensus 620 ~~~~ 623 (636)
++..
T Consensus 127 ~~~~ 130 (144)
T 3kht_A 127 SYWL 130 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 32
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=41.77 E-value=1.6e+02 Score=30.23 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCceEEEEEccCCCcc--------------C----hHHHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHHHh
Q 006663 543 DVIEHVLLDLSGVSTI--------------D----MTGIAAFREILRILEAKSIKMKLINPR--IGVMDKMIL 595 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~i--------------D----ssgl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~ 595 (636)
.++|.+|+|+.++=.= | ...-.-+.++.+.++++|+++.++.-+ +.+++.++.
T Consensus 220 ~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp CCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 5699999999875321 0 112345778889999999999998654 567788876
No 33
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=41.12 E-value=85 Score=29.92 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=46.1
Q ss_pred CcEEEEEecCceeee------------chHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHH
Q 006663 504 PGILILQLGSPIYFA------------NCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILR 571 (636)
Q Consensus 504 ~~v~ivrl~g~L~f~------------na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~ 571 (636)
++|.+++++|++.-. +.+.+.+.++++-++ ++++.|+|+... ..-|..+.+.+.+..+
T Consensus 3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d---------~~v~~ivL~~~s-~Gg~~~~~~~i~~~l~ 72 (240)
T 3rst_A 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDD---------KTVKGIVLKVNS-PGGGVYESAEIHKKLE 72 (240)
T ss_dssp CEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHC---------TTEEEEEEEEEE-CCBCHHHHHHHHHHHH
T ss_pred CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhC---------CCcEEEEEEecC-CCCCHHHHHHHHHHHH
Confidence 467788888877643 346677777665332 568999998763 4567777777877777
Q ss_pred HHHh-CCCEEE
Q 006663 572 ILEA-KSIKMK 581 (636)
Q Consensus 572 ~~~~-~g~~l~ 581 (636)
++++ .+..++
T Consensus 73 ~~~~~~~kPVi 83 (240)
T 3rst_A 73 EIKKETKKPIY 83 (240)
T ss_dssp HHHHHHCCCEE
T ss_pred HHHHhCCCeEE
Confidence 7776 555543
No 34
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=39.45 E-value=28 Score=33.42 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=39.4
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEc---CC--hhHHHHHHhcCCc
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLIN---PR--IGVMDKMILSKFI 599 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~---~~--~~v~~~l~~~gl~ 599 (636)
..+.|++|+.++=.-+-..+.--.+..++++++|++++++. .+ ..+.+.++..|+.
T Consensus 4 ~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp CCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 36899999998743333223344466777888899999998 22 4577888888874
No 35
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=39.13 E-value=66 Score=26.70 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=38.5
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHH---HHhcCCccccCC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDK---MILSKFIDVIGK 604 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~---l~~~gl~~~~~~ 604 (636)
++..|++|... =|..|.+.+..+.+.....+..+++.....+.... ....|..+.+.+
T Consensus 50 ~~dlvi~d~~l---~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~k 110 (140)
T 3grc_A 50 PYAAMTVDLNL---PDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEK 110 (140)
T ss_dssp CCSEEEECSCC---SSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECS
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeC
Confidence 46799999753 25668888877766445567888888776654433 345677777644
No 36
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=39.12 E-value=29 Score=31.41 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=39.6
Q ss_pred ceEEEEEccCCCcc---------------ChHHHHHHHHHHHHHHhCCCEEEEEcCC-----hhHHHHHHhcCCcccc
Q 006663 545 IEHVLLDLSGVSTI---------------DMTGIAAFREILRILEAKSIKMKLINPR-----IGVMDKMILSKFIDVI 602 (636)
Q Consensus 545 ~~~vIlD~s~V~~i---------------Dssgl~~L~~l~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~ 602 (636)
.+.|++|+.++-.- +..-..-..++.++++++|.++.++.-+ ..+.+.++..|+.+.+
T Consensus 3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 57888888765411 0122233456778888999999887643 5678899999987655
No 37
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=38.64 E-value=81 Score=26.22 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=39.0
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHh
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
++..+++|... . |..|.+.+..+.+. .....+++....++........|..+.+.+-.-...+.++++.+....
T Consensus 55 ~~dlvi~d~~l-~--~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (143)
T 2qv0_A 55 KVDAIFLDINI-P--SLDGVLLAQNISQF--AHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAW 128 (143)
T ss_dssp CCSEEEECSSC-S--SSCHHHHHHHHTTS--TTCCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCC-C--CCCHHHHHHHHHcc--CCCceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHH
Confidence 36799999753 2 44577666655442 234545544433334444456788777644222334444554444333
No 38
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=38.33 E-value=73 Score=29.63 Aligned_cols=74 Identities=18% Similarity=0.081 Sum_probs=51.2
Q ss_pred CceEEEEEccCCCccChH--------------HHHHHHHHHHHHHhCCCEEEEEcC--ChhHHHHHHhcCCccccCCccc
Q 006663 544 VIEHVLLDLSGVSTIDMT--------------GIAAFREILRILEAKSIKMKLINP--RIGVMDKMILSKFIDVIGKDSV 607 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDss--------------gl~~L~~l~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~i 607 (636)
..+.|++|+.++ .+|+. -...+ ..++++++|+++.++.- ...+++.++..|+.+.+..
T Consensus 48 ~ik~viFDlDGT-L~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~--- 121 (211)
T 3ij5_A 48 NIRLLICDVDGV-MSDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQG--- 121 (211)
T ss_dssp TCSEEEECCTTT-TSSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECS---
T ss_pred CCCEEEEeCCCC-EECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcc---
Confidence 378999999876 23321 00111 67888999999999864 4578899999999887742
Q ss_pred ccCHHHHHHHHHHHhc
Q 006663 608 FLSIEDAIDACRFSLQ 623 (636)
Q Consensus 608 f~t~~~Al~~~~~~~~ 623 (636)
..+-.++++.+.+++.
T Consensus 122 ~k~K~~~l~~~~~~lg 137 (211)
T 3ij5_A 122 QSDKLVAYHELLATLQ 137 (211)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHcC
Confidence 2556777777666543
No 39
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=38.31 E-value=80 Score=26.79 Aligned_cols=70 Identities=14% Similarity=0.034 Sum_probs=41.0
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcC-CccccCCcccccCHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI--GVMDKMILSK-FIDVIGKDSVFLSIEDAIDAC 618 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~g-l~~~~~~~~if~t~~~Al~~~ 618 (636)
++..+++|... -|..|.+.+..+.+. ..+..+++..... +........| .++.+.+-.-...+.++++.+
T Consensus 58 ~~dlvi~D~~l---~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~ 130 (153)
T 3hv2_A 58 EVDLVISAAHL---PQMDGPTLLARIHQQ--YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQA 130 (153)
T ss_dssp CCSEEEEESCC---SSSCHHHHHHHHHHH--CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCC---CcCcHHHHHHHHHhH--CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHH
Confidence 46899999753 256788888777663 3467777766543 3334444566 777775432233344444433
No 40
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=37.16 E-value=97 Score=25.54 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=35.7
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcCCccccCC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI--GVMDKMILSKFIDVIGK 604 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~ 604 (636)
++..+++|... -|..|.+.+..+.+.....+..+++..... +........|..+.+.+
T Consensus 54 ~~dlii~d~~l---~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~k 113 (143)
T 3cnb_A 54 KPDVVMLDLMM---VGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGK 113 (143)
T ss_dssp CCSEEEEETTC---TTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeccc---CCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeC
Confidence 36899999754 245577766666553233567777665443 33355556788887743
No 41
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=36.09 E-value=33 Score=33.29 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=41.7
Q ss_pred CCceEEEEEccCCCccChHH---------------------------HHHHHHHHHHHHhCCCEEEEEcCCh-----hHH
Q 006663 543 DVIEHVLLDLSGVSTIDMTG---------------------------IAAFREILRILEAKSIKMKLINPRI-----GVM 590 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssg---------------------------l~~L~~l~~~~~~~g~~l~l~~~~~-----~v~ 590 (636)
...+.|++|+.++- +|+.. ..-..++.+.++++|+++.++.-++ .+.
T Consensus 57 ~~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~ 135 (258)
T 2i33_A 57 EKKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATI 135 (258)
T ss_dssp SSEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHH
T ss_pred CCCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHH
Confidence 56889999998854 55541 1224567888999999999987665 467
Q ss_pred HHHHhcCCc
Q 006663 591 DKMILSKFI 599 (636)
Q Consensus 591 ~~l~~~gl~ 599 (636)
+.|+..|+.
T Consensus 136 ~~L~~~Gl~ 144 (258)
T 2i33_A 136 KNLERVGAP 144 (258)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHcCCC
Confidence 788888886
No 42
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=35.44 E-value=54 Score=27.43 Aligned_cols=54 Identities=6% Similarity=-0.061 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCccccc-CHHHHHHHHHHHhcc
Q 006663 568 EILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFL-SIEDAIDACRFSLQK 624 (636)
Q Consensus 568 ~l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~-t~~~Al~~~~~~~~~ 624 (636)
.+.+.+.+.|+++++|+ +.+...+.|+..|+.-..+ .-. +++||++.+.+..+.
T Consensus 58 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~g~~i~eal~~~~~g~L~ 113 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTGYVGPKAFQALQAAGIKVGQD---LEGLTVRQAVQRFLDGQVP 113 (120)
T ss_dssp HHHHHHHHHTEEEEECSCCCHHHHHHHHHTTCEEECC---CTTSBHHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCCEEEECCCCHhHHHHHHHCCCEEEEc---CCCCcHHHHHHHHHcCCCC
Confidence 34555666899999987 5788999999999843332 234 889999887654443
No 43
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=34.29 E-value=1.1e+02 Score=32.52 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=59.0
Q ss_pred ceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEcc--CCCccChHHHHHHHHHHHHHHhC--CCEE-EEE---cC
Q 006663 514 PIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLS--GVSTIDMTGIAAFREILRILEAK--SIKM-KLI---NP 585 (636)
Q Consensus 514 ~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s--~V~~iDssgl~~L~~l~~~~~~~--g~~l-~l~---~~ 585 (636)
|++..+.+.+++.++..+++ +.+..+++|+- .-...|. .-.+...+.+..++. +..+ +.+ +-
T Consensus 307 PvD~~d~~~~~~al~~~l~D---------~~vd~vlv~~v~~~~~~~d~-~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~ 376 (480)
T 3dmy_A 307 PHPMIDPTLRNQLIADLGAK---------PQVRVLLLDVVIGFGATADP-AASLVSAWQKACAARLDNQPLYAIATVTGT 376 (480)
T ss_dssp CCTTTCCHHHHHHHHHGGGC---------TTEEEEEEEEECSTTSCSCH-HHHHHHHHHHHHHTSCTTSCCEEEEEEESC
T ss_pred CcCCCCHHHHHHHHHHHhcC---------CCCCEEEEEeecCCCCCCCh-HHHHHHHHHHHHHhccCCCCeEEEEEecCc
Confidence 45555677888888876654 45788888864 2333453 123333343333333 4553 333 22
Q ss_pred --Chh----HHHHHHhcCCccccCCcccccCHHHHHHHHHHHhccccc
Q 006663 586 --RIG----VMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQKEKH 627 (636)
Q Consensus 586 --~~~----v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~~~~ 627 (636)
.++ .++.|+..|+ ..|+|.++|++.+......++.
T Consensus 377 ~~~~~~~~~~~~~L~~aGI-------p~f~spe~Av~a~~~l~~~~~~ 417 (480)
T 3dmy_A 377 ERDPQCRSQQIATLEDAGI-------AVVSSLPEATLLAAALIHPLSP 417 (480)
T ss_dssp TTSTTCHHHHHHHHHHTTC-------EECSSHHHHHHHHHHHTSCCC-
T ss_pred ccchhhHHHHHHHHHhCCC-------cccCCHHHHHHHHHHHHhcccC
Confidence 233 3488998886 6899999999999877755443
No 44
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=31.97 E-value=22 Score=32.49 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=49.4
Q ss_pred CceEEEEEccCCC-----ccChHHHHHHHHH-------HHHHHhCCCEEEEEcCC--hhHHHHHHhcCCccccCCccccc
Q 006663 544 VIEHVLLDLSGVS-----TIDMTGIAAFREI-------LRILEAKSIKMKLINPR--IGVMDKMILSKFIDVIGKDSVFL 609 (636)
Q Consensus 544 ~~~~vIlD~s~V~-----~iDssgl~~L~~l-------~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~ 609 (636)
+.+.+++|+.++- +.|..+ ..+.++ .+.++++|+++.++.-+ ..+.+.++..|+.+.+.. + .
T Consensus 18 ~ik~vifD~DGtL~~~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~--~-k 93 (191)
T 3n1u_A 18 KIKCLICDVDGVLSDGLLHIDNHG-NELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG--Q-V 93 (191)
T ss_dssp TCSEEEECSTTTTBCSCCEECTTC-CEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECS--C-S
T ss_pred cCCEEEEeCCCCCCCCceeecCCc-hhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeC--C-C
Confidence 3789999998853 222211 122233 78889999999998644 578889999999877632 2 3
Q ss_pred CHHHHHHHHHHHh
Q 006663 610 SIEDAIDACRFSL 622 (636)
Q Consensus 610 t~~~Al~~~~~~~ 622 (636)
+-.++++.+.+++
T Consensus 94 pk~~~~~~~~~~~ 106 (191)
T 3n1u_A 94 DKRSAYQHLKKTL 106 (191)
T ss_dssp SCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh
Confidence 3456666665554
No 45
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=31.11 E-value=71 Score=26.27 Aligned_cols=82 Identities=9% Similarity=0.013 Sum_probs=38.2
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcCCccccCCcccccCHHHHHHHHHHHh
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI--GVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
+..+++|... . |..|.+.+..+.+.. ....+++..... .........|..+.+.+-.-...+.++++.+....
T Consensus 48 ~dlvl~D~~l-~--~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 48 PDLIVLDVML-P--KLDGIEVCKQLRQQK--LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp CSEEEEESSC-S--SSCHHHHHHHHHHTT--CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCEEEEecCC-C--CCCHHHHHHHHHcCC--CCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 5789999753 2 445777666655432 345555544332 22344456788777743222233344444444333
Q ss_pred ccccccCCc
Q 006663 623 QKEKHQNDL 631 (636)
Q Consensus 623 ~~~~~~~~~ 631 (636)
..+.+.+++
T Consensus 123 ~~~~~~~~~ 131 (136)
T 1mvo_A 123 EIRAPSSEM 131 (136)
T ss_dssp ---------
T ss_pred ccccchhhh
Confidence 333333333
No 46
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=30.84 E-value=90 Score=26.13 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhcccc
Q 006663 568 EILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQKEK 626 (636)
Q Consensus 568 ~l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~~~ 626 (636)
.+.+.+.+.|+++++|+ +.+...+.|+..|+.-..+ .-.+++||++.+.+....+.
T Consensus 56 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~g~L~~~ 112 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIASSPGPNAFEVLNELGIKIYRA---TGTSVEENLKLFTEGNLEEI 112 (124)
T ss_dssp THHHHHHHTTCCEEEECCSSHHHHHHHHHHTCEEEEC---CSCCHHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHHhCCCCcC
Confidence 35566678899999987 5788999999999843332 23689999998776544433
No 47
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.79 E-value=95 Score=25.71 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=35.5
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHHHhcCCccccCC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR--IGVMDKMILSKFIDVIGK 604 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~ 604 (636)
++..+++|+ .. |..|.+.+..+.+. ..+..+++.... .+........|..+.+.+
T Consensus 48 ~~dlvi~d~--~~--~~~g~~~~~~l~~~--~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~k 104 (142)
T 2qxy_A 48 KIDLVFVDV--FE--GEESLNLIRRIREE--FPDTKVAVLSAYVDKDLIINSVKAGAVDYILK 104 (142)
T ss_dssp CCSEEEEEC--TT--THHHHHHHHHHHHH--CTTCEEEEEESCCCHHHHHHHHHHTCSCEEES
T ss_pred CCCEEEEeC--CC--CCcHHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHCCcceeEeC
Confidence 468999997 33 56777777776654 235777666543 344555667888877743
No 48
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=29.67 E-value=3.1e+02 Score=24.62 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHh--CCCEEEEEcCC---hhHHHHHHhcCCccccCCcccccCHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEA--KSIKMKLINPR---IGVMDKMILSKFIDVIGKDSVFLSIEDAIDAC 618 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~--~g~~l~l~~~~---~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~ 618 (636)
++..|++|+.. . |.+|++.+..+.+.-+. .+..+++.... .+..+.....|..+++.+ =+..+.++++.+
T Consensus 119 ~~dlillD~~l-p--~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~K--P~~~L~~~i~~~ 193 (206)
T 3mm4_A 119 PFDYIFMDCQM-P--EMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDK--SLNQLANVIREI 193 (206)
T ss_dssp SCSEEEEESCC-S--SSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEET--TCTTHHHHHHHH
T ss_pred CCCEEEEcCCC-C--CCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcC--cHHHHHHHHHHH
Confidence 57899999754 3 45688888887765443 56666666543 245555667888887754 233666776655
Q ss_pred HHH
Q 006663 619 RFS 621 (636)
Q Consensus 619 ~~~ 621 (636)
.+.
T Consensus 194 l~~ 196 (206)
T 3mm4_A 194 ESK 196 (206)
T ss_dssp C--
T ss_pred Hhh
Confidence 443
No 49
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=29.38 E-value=45 Score=31.84 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=42.0
Q ss_pred eEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh-----hHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 546 EHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI-----GVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 546 ~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~-----~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
+.+++|+.++=+-+...+..-.+..++++++|+++.++.-++ ++.+.++..|+... .+.++.+...+.++++
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~~--~~~i~~~~~~~~~~l~ 78 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVS--SSIIITSGLATRLYMS 78 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCCC--GGGEEEHHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC--hhhEEecHHHHHHHHH
Confidence 678999987655322212223456667778899999987543 45566666777421 2345554444444443
No 50
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=29.18 E-value=88 Score=26.08 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhc
Q 006663 568 EILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQ 623 (636)
Q Consensus 568 ~l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~ 623 (636)
.+.+.+.+.|+++++++ +.+...+.|+..|+.-..+ .-.+++||++.+.+...
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~v~eal~~~~~g~L 107 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVTG---VYGRISDVIKAFIGGKL 107 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHTTCEEECS---BCSBHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHcCCC
Confidence 45666677899999987 5788999999999843332 23689999998765433
No 51
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=29.18 E-value=2.3e+02 Score=24.13 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=57.7
Q ss_pred CcEEEEEecCceeeechHHHHHHHHHHHHhhhcccCCCCCCceEEEEEccCCCccChHHHHHHHHHHHHHHhC---CCEE
Q 006663 504 PGILILQLGSPIYFANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDLSGVSTIDMTGIAAFREILRILEAK---SIKM 580 (636)
Q Consensus 504 ~~v~ivrl~g~L~f~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~---g~~l 580 (636)
.|..++.+.. +...+++.+...+ . +.+.|.+-+..- +....+.++.++++++ ++++
T Consensus 30 ~G~~Vi~lG~---~~p~e~~v~~a~~---~----------~~d~v~lS~~~~-----~~~~~~~~~i~~l~~~g~~~i~v 88 (137)
T 1ccw_A 30 AGFNVVNIGV---LSPQELFIKAAIE---T----------KADAILVSSLYG-----QGEIDCKGLRQKCDEAGLEGILL 88 (137)
T ss_dssp TTCEEEEEEE---EECHHHHHHHHHH---H----------TCSEEEEEECSS-----THHHHHTTHHHHHHHTTCTTCEE
T ss_pred CCCEEEECCC---CCCHHHHHHHHHh---c----------CCCEEEEEecCc-----CcHHHHHHHHHHHHhcCCCCCEE
Confidence 4566666654 3445565555443 1 357888766543 3445666777777765 4678
Q ss_pred EEEcCC---hh----HHHHHHhcCCccccCCcccccCHHHHHHHHHHHh
Q 006663 581 KLINPR---IG----VMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 581 ~l~~~~---~~----v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
++-+.. ++ +.+.++..|++..++ -=.+..|.++++.+++
T Consensus 89 ~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~---~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 89 YVGGNIVVGKQHWPDVEKRFKDMGYDRVYA---PGTPPEVGIADLKKDL 134 (137)
T ss_dssp EEEESCSSSSCCHHHHHHHHHHTTCSEECC---TTCCHHHHHHHHHHHH
T ss_pred EEECCCcCchHhhhhhHHHHHHCCCCEEEC---CCCCHHHHHHHHHHHh
Confidence 777743 22 356799999977663 2236677777776654
No 52
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=29.11 E-value=2e+02 Score=29.52 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=54.4
Q ss_pred echHHHHHHHHHHHHhhhcccCCCCCCceEEEEEc-cCCCccChHHHHHHHHHHHHHHhCCCEEE--EEcCCh-hHHHHH
Q 006663 518 ANCNYIRERVLRWIRDEQVLSNSKPDVIEHVLLDL-SGVSTIDMTGIAAFREILRILEAKSIKMK--LINPRI-GVMDKM 593 (636)
Q Consensus 518 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~vIlD~-s~V~~iDssgl~~L~~l~~~~~~~g~~l~--l~~~~~-~v~~~l 593 (636)
++.+++++.++..+++ ++++.++++. .++...|--+ +.+.+..+++ +.++.++ +.+.+. .-++.|
T Consensus 293 a~~~~~~~~~~~il~d---------~~v~~ilvni~ggi~~~~~vA-~gii~a~~~~-~~~~pivvrl~G~n~~~g~~~l 361 (388)
T 2nu8_B 293 ATKERVTEAFKIILSD---------DKVKAVLVNIFGGIVRCDLIA-DGIIGAVAEV-GVNVPVVVRLEGNNAELGAKKL 361 (388)
T ss_dssp CCHHHHHHHHHHHHTS---------TTCCEEEEEEESCSSCHHHHH-HHHHHHHHHH-TCCSCEEEEEESTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC---------CCCCEEEEEecCCcCCchHHH-HHHHHHHHhc-CCCCeEEEEeCCCCHHHHHHHH
Confidence 4567777777655443 4567776664 7777777766 4444444444 2455555 455443 445777
Q ss_pred HhcCCccccCCcccc--cCHHHHHHHHHHHh
Q 006663 594 ILSKFIDVIGKDSVF--LSIEDAIDACRFSL 622 (636)
Q Consensus 594 ~~~gl~~~~~~~~if--~t~~~Al~~~~~~~ 622 (636)
+.+|+ .+| +|.++|.+.+-...
T Consensus 362 ~~~g~-------~~~~~~~~~~aa~~~v~~~ 385 (388)
T 2nu8_B 362 ADSGL-------NIIAAKGLTDAAQQVVAAV 385 (388)
T ss_dssp HTTCS-------SEEECSSHHHHHHHHHHHT
T ss_pred HHCCC-------ceecCCCHHHHHHHHHHHh
Confidence 77774 456 99999998776543
No 53
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=29.07 E-value=76 Score=31.03 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=39.2
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----ChhHHHHHHhcCCc
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP-----RIGVMDKMILSKFI 599 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~ 599 (636)
.+.+++|+.++=+-+..-...-.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~ 80 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFG 80 (306)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 68999999887654443333345667788899999998773 24566788888874
No 54
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.64 E-value=67 Score=26.55 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=42.6
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR--IGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
+..+++|... -|..|.+.+..+.+.. .+..+.+.... .+........|..+.+.+-.-...+.++++.+.+
T Consensus 52 ~dlvi~d~~l---~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 52 PDVIITDIRM---PKLGGLEMLDRIKAGG--AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CSEEEECSSC---SSSCHHHHHHHHHHTT--CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC---CCCCHHHHHHHHHhcC--CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 6799999753 3566877777665532 45666665543 3355556678888877543333444444444443
No 55
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=28.33 E-value=1.4e+02 Score=24.56 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=42.2
Q ss_pred CCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcCCccccCCcccccCHHHHHHHH
Q 006663 543 DVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI--GVMDKMILSKFIDVIGKDSVFLSIEDAIDAC 618 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~ 618 (636)
.++..+++|... -|..|++.+..+.+. ..+..+++..... +........|..+.+.+..-...+.++++.+
T Consensus 48 ~~~dlvi~d~~l---~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 120 (143)
T 3jte_A 48 NSIDVVITDMKM---PKLSGMDILREIKKI--TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNA 120 (143)
T ss_dssp TTCCEEEEESCC---SSSCHHHHHHHHHHH--CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC---CCCcHHHHHHHHHHh--CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 347899999753 356788877777664 3456766665443 3355566778877774432233334444433
No 56
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=28.25 E-value=43 Score=34.18 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=47.0
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----hhHHHHHH-hcCCccccCCcccccC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR-----IGVMDKMI-LSKFIDVIGKDSVFLS 610 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~-----~~v~~~l~-~~gl~~~~~~~~if~t 610 (636)
+.+.+++|+.+|-+-+...+.--.+..+.++++|+++.++.-+ .+..+.|+ ..|+. +..++++.+
T Consensus 12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~--~~~~~i~ts 82 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVD--VSPLQIIQS 82 (352)
T ss_dssp CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSC--CCGGGEECT
T ss_pred cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCC--CChhhEeeh
Confidence 4689999999998877666666677788888999999987654 45667777 57873 233455543
No 57
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=28.09 E-value=45 Score=30.73 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=40.3
Q ss_pred CceEEEEEccCCCccCh---------HHHHHHHHHHHHHHhCCCEEEEEcCCh-----------------hHHHHHHhcC
Q 006663 544 VIEHVLLDLSGVSTIDM---------TGIAAFREILRILEAKSIKMKLINPRI-----------------GVMDKMILSK 597 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDs---------sgl~~L~~l~~~~~~~g~~l~l~~~~~-----------------~v~~~l~~~g 597 (636)
..+.+++|+.++-.-+. .-..-..++.++++++|+++.++.-++ .+.+.++..|
T Consensus 24 ~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 103 (211)
T 2gmw_A 24 SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD 103 (211)
T ss_dssp CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcC
Confidence 36789999988765443 223345677888899999998876654 4677888888
Q ss_pred Cc
Q 006663 598 FI 599 (636)
Q Consensus 598 l~ 599 (636)
+.
T Consensus 104 l~ 105 (211)
T 2gmw_A 104 VD 105 (211)
T ss_dssp CC
T ss_pred Cc
Confidence 73
No 58
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=27.49 E-value=1.1e+02 Score=25.47 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=39.6
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHHHhcCCccccCCcccccCHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR--IGVMDKMILSKFIDVIGKDSVFLSIEDAIDAC 618 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~ 618 (636)
+..+++|... . |..|.+.+..+.+.-...+..+++.... .+........|..+.+.+-.-...+.++++.+
T Consensus 53 ~dlii~d~~l-~--~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~ 125 (147)
T 2zay_A 53 PHLIITEANM-P--KISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRV 125 (147)
T ss_dssp CSEEEEESCC-S--SSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCEEEEcCCC-C--CCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 6799999753 2 4567776666655323346666665543 33444555688888774322223333444433
No 59
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=27.10 E-value=77 Score=28.77 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhc
Q 006663 562 GIAAFREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQ 623 (636)
Q Consensus 562 gl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~ 623 (636)
|.++|.++...+ +.+..+.+.+.. .+.+-|-...-.+.+ .+.+|.+|+++.+++.++
T Consensus 117 g~GTL~E~~~al-~~~kpV~~l~~~-~~~~gfi~~~~~~~i---~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 117 GPGTAAEVALAL-KAKKPVVLLGTQ-PEAEKFFTSLDAGLV---HVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp CHHHHHHHHHHH-HTTCCEEEESCC-HHHHHHHHHHCTTTE---EEESSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHH-HhCCcEEEEcCc-ccccccCChhhcCeE---EEcCCHHHHHHHHHHHHH
Confidence 579999999888 569999999884 344433333323344 789999999999987664
No 60
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=26.06 E-value=1.1e+02 Score=26.80 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=37.4
Q ss_pred eEEEEEccCCCccChH----------HHHHHHHHHHHHHhCCCEEEEEcCCh-----------------hHHHHHHhcC-
Q 006663 546 EHVLLDLSGVSTIDMT----------GIAAFREILRILEAKSIKMKLINPRI-----------------GVMDKMILSK- 597 (636)
Q Consensus 546 ~~vIlD~s~V~~iDss----------gl~~L~~l~~~~~~~g~~l~l~~~~~-----------------~v~~~l~~~g- 597 (636)
|.+++|+.++-.-+.. -..-..++.++++++|.++.++.-++ .+.+.++..|
T Consensus 2 k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 81 (179)
T 3l8h_A 2 KLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGG 81 (179)
T ss_dssp CEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 5678888765433211 11234567778889999998887664 4577888888
Q ss_pred -Ccccc
Q 006663 598 -FIDVI 602 (636)
Q Consensus 598 -l~~~~ 602 (636)
+...+
T Consensus 82 ~~~~~~ 87 (179)
T 3l8h_A 82 VVDAIF 87 (179)
T ss_dssp CCCEEE
T ss_pred ceeEEE
Confidence 66654
No 61
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=25.93 E-value=60 Score=31.26 Aligned_cols=73 Identities=11% Similarity=0.047 Sum_probs=46.0
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----ChhHHHHHHhcCCc-cccCCcccccCHHHHHHHH
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP-----RIGVMDKMILSKFI-DVIGKDSVFLSIEDAIDAC 618 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~-~~~~~~~if~t~~~Al~~~ 618 (636)
.+.+++|+.++-+-+.....--.+..++++++|+++.++.- ...+.+.++..|+. ... +.++.+.+.+.+.+
T Consensus 14 ~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~~~~~--~~ii~~~~~~~~~l 91 (284)
T 2hx1_A 14 YKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSITA--DKIISSGMITKEYI 91 (284)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCTTCCG--GGEEEHHHHHHHHH
T ss_pred CCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcCCCCH--hhEEcHHHHHHHHH
Confidence 68999999987644322222233556777889999999863 35677888888875 322 34555444444344
Q ss_pred H
Q 006663 619 R 619 (636)
Q Consensus 619 ~ 619 (636)
.
T Consensus 92 ~ 92 (284)
T 2hx1_A 92 D 92 (284)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=25.71 E-value=69 Score=26.48 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHhcc
Q 006663 569 ILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSLQK 624 (636)
Q Consensus 569 l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~~~ 624 (636)
+.+.+.+.|+++++|+ +.+...+.|+..|+.-..+ .-.+++||++.+.+....
T Consensus 54 ~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~g~L~ 107 (116)
T 1rdu_A 54 VVQSLVSKGVEYLIASNVGRNAFETLKAAGVKVYRF---EGGTVQEAIDAFSEGRLE 107 (116)
T ss_dssp HHHHHHTTTCCEEECSSCCSSCHHHHHTTTCEEECC---CSCBHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHhCCCC
Confidence 5566678899999987 4778899999999843332 235899999987764443
No 63
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=25.59 E-value=2.3e+02 Score=23.14 Aligned_cols=57 Identities=7% Similarity=0.076 Sum_probs=36.0
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcCCccccC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI--GVMDKMILSKFIDVIG 603 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~ 603 (636)
++..+++|+.. . |..|++.+..+.+.-...+..+.+..... .........|..+.+.
T Consensus 48 ~~dlvl~D~~l-p--~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~ 106 (136)
T 3t6k_A 48 LPDALICDVLL-P--GIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLA 106 (136)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEe
Confidence 36799999763 3 45688888777654334566666655443 3334455678877774
No 64
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=25.40 E-value=1.1e+02 Score=26.31 Aligned_cols=51 Identities=10% Similarity=-0.061 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHHHh
Q 006663 568 EILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFSL 622 (636)
Q Consensus 568 ~l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~~ 622 (636)
.+.+.+.+.|+++++|+ +.+...+.|+. |+.-..+. -.+++||++.+.+..
T Consensus 70 ~~~~~L~~~gv~~VI~g~iG~~a~~~L~~-GI~v~~~~---~~~veeal~~~~~G~ 121 (136)
T 2re2_A 70 FMLKSALDHGANALVLSEIGSPGFNFIKN-KMDVYIVP---EMPVADALKLILEGK 121 (136)
T ss_dssp HHHHHHHHTTCSEEEESCCBHHHHHHHTT-TSEEEECC---SCBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHC-CCEEEEcC---CCCHHHHHHHHHhCC
Confidence 45566667899999997 56888899999 98433331 268999999877633
No 65
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=24.28 E-value=87 Score=26.95 Aligned_cols=50 Identities=6% Similarity=0.087 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCEEEEEc-CChhHHHHHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 568 EILRILEAKSIKMKLIN-PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 568 ~l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
.+.+.+.+.|+++++|+ +.+...+.|+..|+.-..+ .-.+++||++.+.+
T Consensus 67 ~~a~~L~~~gv~vVI~g~IG~~a~~~L~~~GI~v~~~---~~g~i~eal~~~~~ 117 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIKG---ASGTVEEVVNQYLS 117 (136)
T ss_dssp CHHHHHHHTTCSEEECSCCCHHHHHHHHHTTCEEECS---CCSBHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEec---CCCCHHHHHHHHHh
Confidence 45666777899999987 5789999999999843332 23689999987764
No 66
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=23.74 E-value=2.4e+02 Score=24.88 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=49.6
Q ss_pred CCceEEEEEccCCC-----ccChHHH--------HHHHHHHHHHHhCCCEEEEEcCChhHHHHHH--hcCCccccCCccc
Q 006663 543 DVIEHVLLDLSGVS-----TIDMTGI--------AAFREILRILEAKSIKMKLINPRIGVMDKMI--LSKFIDVIGKDSV 607 (636)
Q Consensus 543 ~~~~~vIlD~s~V~-----~iDssgl--------~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~--~~gl~~~~~~~~i 607 (636)
..++.+++|+.++- +++..+- +. ...++++++|+++.++.-++.+.+.++ ..|+. .+..
T Consensus 7 ~~ikliv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~--~~L~~Lk~~Gi~~~I~Tg~~~~~~~l~~l~lgi~-~~~g--- 80 (168)
T 3ewi_A 7 KEIKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA--IGISLLKKSGIEVRLISERACSKQTLSALKLDCK-TEVS--- 80 (168)
T ss_dssp CCCCEEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH--HHHHHHHHTTCEEEEECSSCCCHHHHHTTCCCCC-EECS---
T ss_pred hcCcEEEEeCccceECCcEEEcCCCCEEEEEecCcH--HHHHHHHHCCCEEEEEeCcHHHHHHHHHhCCCcE-EEEC---
Confidence 45899999998863 3443320 11 146888899999999887777888888 66765 4421
Q ss_pred ccCHHHHHHHHHHHh
Q 006663 608 FLSIEDAIDACRFSL 622 (636)
Q Consensus 608 f~t~~~Al~~~~~~~ 622 (636)
-.+-.++++.+.+++
T Consensus 81 ~~~K~~~l~~~~~~~ 95 (168)
T 3ewi_A 81 VSDKLATVDEWRKEM 95 (168)
T ss_dssp CSCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHc
Confidence 135567777666655
No 67
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.48 E-value=2.2e+02 Score=22.88 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=35.5
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-ChhHHHHHHhcCCccccCC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP-RIGVMDKMILSKFIDVIGK 604 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~ 604 (636)
++..+++|... -|..|.+.+..+.+........+.+... .++......+.|..+.+.+
T Consensus 50 ~~dlii~d~~l---~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~k 108 (132)
T 3lte_A 50 EPAIMTLDLSM---PKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEK 108 (132)
T ss_dssp CCSEEEEESCB---TTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECS
T ss_pred CCCEEEEecCC---CCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhC
Confidence 36789999753 2456777776665543224566666554 3444445566788887743
No 68
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=22.43 E-value=78 Score=29.80 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCEEEEEcCChhHHHHHHhcCCcccc
Q 006663 566 FREILRILEAKSIKMKLINPRIGVMDKMILSKFIDVI 602 (636)
Q Consensus 566 L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~ 602 (636)
..++.+.++++|+++.+++.++...+.|++.|+.+.|
T Consensus 121 ~~~ll~~Lk~~g~~i~i~~~~~~~~~~L~~~gl~~~F 157 (250)
T 4gib_A 121 IESLLIDVKSNNIKIGLSSASKNAINVLNHLGISDKF 157 (250)
T ss_dssp HHHHHHHHHHTTCEEEECCSCTTHHHHHHHHTCGGGC
T ss_pred HHHHHHHHHhcccccccccccchhhhHhhhccccccc
Confidence 4677788899999999999999999999999998776
No 69
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=20.94 E-value=2.4e+02 Score=22.87 Aligned_cols=54 Identities=7% Similarity=0.137 Sum_probs=34.3
Q ss_pred ceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHHHhcCCccccC
Q 006663 545 IEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR--IGVMDKMILSKFIDVIG 603 (636)
Q Consensus 545 ~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~ 603 (636)
+..+++|...-. |..|.+.+..+.+. .+..+++.... .+........|..+.+.
T Consensus 55 ~dlii~d~~~~~--~~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 110 (140)
T 3cg0_A 55 PDIALVDIMLCG--ALDGVETAARLAAG---CNLPIIFITSSQDVETFQRAKRVNPFGYLA 110 (140)
T ss_dssp CSEEEEESSCCS--SSCHHHHHHHHHHH---SCCCEEEEECCCCHHHHHHHHTTCCSEEEE
T ss_pred CCEEEEecCCCC--CCCHHHHHHHHHhC---CCCCEEEEecCCCHHHHHHHHhcCCCEEEe
Confidence 679999975321 35677777777665 56666665443 33344555678877763
No 70
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=20.77 E-value=53 Score=31.26 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=38.5
Q ss_pred CCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----ChhHHHHHHhcCCc
Q 006663 543 DVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP-----RIGVMDKMILSKFI 599 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~ 599 (636)
.+.+.+++|+.++=.=+..-..--.+..++++++|++++++.- .....+.++..|+.
T Consensus 15 ~~~~~v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~ 76 (271)
T 1vjr_A 15 DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVD 76 (271)
T ss_dssp GGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCC
T ss_pred cCCCEEEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 3478999999875433322222234567788899999999872 24567788887763
No 71
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.71 E-value=65 Score=26.78 Aligned_cols=76 Identities=17% Similarity=0.073 Sum_probs=40.0
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcCCccccCCcccccCHHHHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI--GVMDKMILSKFIDVIGKDSVFLSIEDAIDACRFS 621 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~~ 621 (636)
+...+++|... -|..|.+.+..+.+.....+..+++..... +........|..+.+.+..-...+.++++.+-.+
T Consensus 51 ~~dlii~d~~l---~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 51 FSGVVLLDIMM---PGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp CCEEEEEESCC---SSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 46899999753 245677766666553233456766665432 2333344567666664322223334444444333
Q ss_pred h
Q 006663 622 L 622 (636)
Q Consensus 622 ~ 622 (636)
.
T Consensus 128 ~ 128 (142)
T 3cg4_A 128 V 128 (142)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=20.62 E-value=2e+02 Score=32.44 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=47.8
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCC--EEEEEc--CChhHHHHHHhcCCccccCCcccccCHHHHHHHHH
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSI--KMKLIN--PRIGVMDKMILSKFIDVIGKDSVFLSIEDAIDACR 619 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~--~l~l~~--~~~~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~ 619 (636)
+.+.|.+-. .|.+-+..+.++.+++++.|. -.+++| ...+-.+.++..|.+..++. =.+..++++.+.
T Consensus 655 ~adiVglSs-----l~~~~~~~~~~vi~~Lr~~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~p---gtd~~e~~~~i~ 726 (762)
T 2xij_A 655 DVHAVGVST-----LAAGHKTLVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGP---GTRIPKAAVQVL 726 (762)
T ss_dssp TCSEEEEEE-----CSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEECT---TCCHHHHHHHHH
T ss_pred CCCEEEEee-----ecHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCC---CCCHHHHHHHHH
Confidence 356776643 354556678889999998876 255555 44545778888998776632 127777777777
Q ss_pred HHhcc
Q 006663 620 FSLQK 624 (636)
Q Consensus 620 ~~~~~ 624 (636)
+.+..
T Consensus 727 ~~l~~ 731 (762)
T 2xij_A 727 DDIEK 731 (762)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 73
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.39 E-value=2.3e+02 Score=23.66 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=34.9
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--hhHHHHHHhcCCccccCC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPR--IGVMDKMILSKFIDVIGK 604 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~ 604 (636)
++..+++|... . |..|.+.+..+.+.. .+..+++.... .+........|..+.+.+
T Consensus 51 ~~dlii~D~~l-~--~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 108 (153)
T 3cz5_A 51 TPDIVVMDLTL-P--GPGGIEATRHIRQWD--GAARILIFTMHQGSAFALKAFEAGASGYVTK 108 (153)
T ss_dssp CCSEEEECSCC-S--SSCHHHHHHHHHHHC--TTCCEEEEESCCSHHHHHHHHHTTCSEEEET
T ss_pred CCCEEEEecCC-C--CCCHHHHHHHHHHhC--CCCeEEEEECCCCHHHHHHHHHCCCcEEEec
Confidence 36899999753 2 456777777776652 34555555433 344555566888877743
No 74
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.21 E-value=1.6e+02 Score=25.02 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=35.7
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--ChhHHHHHHhcCCccccC
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINP--RIGVMDKMILSKFIDVIG 603 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~ 603 (636)
+...|++|... -|..|++.+..+.+.. .+..+++... ..+........|..+.+.
T Consensus 83 ~~dliilD~~l---~~~~g~~~~~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 139 (157)
T 3hzh_A 83 NIDIVTLXITM---PKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIV 139 (157)
T ss_dssp GCCEEEECSSC---SSSCHHHHHHHHHHHC--TTCCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeccC---CCccHHHHHHHHHhhC--CCCcEEEEeccCcHHHHHHHHHcCCCEEEe
Confidence 46799999753 3566888887776543 3455555543 355556667788887773
No 75
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=20.08 E-value=1.9e+02 Score=23.67 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=31.3
Q ss_pred CceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCChhHHHHHHhcC--Ccccc
Q 006663 544 VIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRIGVMDKMILSK--FIDVI 602 (636)
Q Consensus 544 ~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~g--l~~~~ 602 (636)
++..+++|+.. . |.+|++.+..+.+.-...+..+.+....+.........| ..+.+
T Consensus 47 ~~dlvi~D~~l-~--~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l 104 (138)
T 3c3m_A 47 PPDLVLLDIMM-E--PMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYI 104 (138)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEE
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheE
Confidence 36799999753 2 455777777665532234566666544433333334444 34555
No 76
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.06 E-value=2.2e+02 Score=23.77 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=45.3
Q ss_pred CCceEEEEEccCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCh--hHHHHHHhcCCccccCCcccccCHHHHHHHHHH
Q 006663 543 DVIEHVLLDLSGVSTIDMTGIAAFREILRILEAKSIKMKLINPRI--GVMDKMILSKFIDVIGKDSVFLSIEDAIDACRF 620 (636)
Q Consensus 543 ~~~~~vIlD~s~V~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~t~~~Al~~~~~ 620 (636)
.++..+++|... -|.+|++.+..+.+. ..+..+++..... +......+.|..+.+.+.. +.++-.+.++.
T Consensus 65 ~~~dlii~D~~l---~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~---~~~~l~~~i~~ 136 (150)
T 4e7p_A 65 ESVDIAILDVEM---PVKTGLEVLEWIRSE--KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKER---SIADLMQTLHT 136 (150)
T ss_dssp SCCSEEEECSSC---SSSCHHHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTS---CHHHHHHHHHH
T ss_pred cCCCEEEEeCCC---CCCcHHHHHHHHHHh--CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCC---CHHHHHHHHHH
Confidence 347899999753 355687777777654 3456776665443 3555666788888774322 44555555554
Q ss_pred Hhccc
Q 006663 621 SLQKE 625 (636)
Q Consensus 621 ~~~~~ 625 (636)
.+..+
T Consensus 137 ~~~~~ 141 (150)
T 4e7p_A 137 VLEGR 141 (150)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 44433
Done!