Query 006666
Match_columns 636
No_of_seqs 229 out of 1386
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 12:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02899 alpha-galactosidase 100.0 6E-158 1E-162 1295.7 49.6 609 24-636 19-633 (633)
2 PLN02229 alpha-galactosidase 100.0 3.2E-96 7E-101 790.3 38.5 360 29-635 56-419 (427)
3 PLN02692 alpha-galactosidase 100.0 2.5E-95 5E-100 780.4 38.4 360 28-636 48-411 (412)
4 PLN02808 alpha-galactosidase 100.0 7.7E-95 1.7E-99 774.9 36.6 362 26-636 22-386 (386)
5 PLN03231 putative alpha-galact 100.0 9.6E-95 2.1E-99 766.4 30.3 348 36-390 1-355 (357)
6 KOG2366 Alpha-D-galactosidase 100.0 4.7E-79 1E-83 633.4 25.9 370 25-636 22-412 (414)
7 PF02065 Melibiase: Melibiase; 100.0 2.9E-33 6.3E-38 303.1 18.7 284 31-383 36-334 (394)
8 COG3345 GalA Alpha-galactosida 99.8 5E-21 1.1E-25 207.7 12.5 169 32-233 288-463 (687)
9 PLN02355 probable galactinol-- 99.8 5.4E-18 1.2E-22 192.2 31.3 299 34-373 196-531 (758)
10 PLN02684 Probable galactinol-- 99.8 1.4E-17 2.9E-22 188.4 29.4 295 38-373 204-522 (750)
11 PLN02219 probable galactinol-- 99.8 2.8E-17 6.1E-22 186.0 31.3 297 32-373 190-523 (775)
12 cd06592 GH31_glucosidase_KIAA1 99.8 5.7E-17 1.2E-21 171.2 22.2 206 34-289 12-235 (303)
13 PLN02711 Probable galactinol-- 99.7 5.8E-15 1.3E-19 167.5 29.4 289 38-372 215-550 (777)
14 PF05691 Raffinose_syn: Raffin 99.7 4.8E-16 1E-20 177.5 20.7 301 38-385 197-548 (747)
15 cd06593 GH31_xylosidase_YicI Y 99.6 3.3E-14 7.1E-19 150.4 17.8 197 49-291 20-237 (308)
16 PLN02982 galactinol-raffinose 99.4 5.8E-12 1.3E-16 143.2 18.7 306 38-384 224-648 (865)
17 PF01055 Glyco_hydro_31: Glyco 99.2 1.4E-10 3.1E-15 128.4 17.4 216 31-292 20-267 (441)
18 cd06604 GH31_glucosidase_II_Ma 99.2 6E-10 1.3E-14 119.7 19.4 196 50-291 21-250 (339)
19 PRK10658 putative alpha-glucos 99.2 1.5E-09 3.3E-14 125.8 21.4 212 31-290 258-495 (665)
20 cd06591 GH31_xylosidase_XylS X 99.1 9E-10 2E-14 117.4 16.6 195 50-291 21-244 (319)
21 cd06595 GH31_xylosidase_XylS-l 99.1 1.8E-09 4E-14 113.7 17.9 208 31-289 2-223 (292)
22 cd06599 GH31_glycosidase_Aec37 99.1 3.7E-09 8.1E-14 112.6 19.1 199 49-291 25-251 (317)
23 cd06597 GH31_transferase_CtsY 99.1 5.6E-09 1.2E-13 112.4 19.6 231 32-291 2-264 (340)
24 cd06602 GH31_MGAM_SI_GAA This 99.1 7.3E-09 1.6E-13 111.4 20.5 199 50-291 21-232 (339)
25 cd06600 GH31_MGAM-like This fa 99.1 5.8E-09 1.3E-13 111.2 19.3 196 50-291 21-228 (317)
26 cd06594 GH31_glucosidase_YihQ 99.1 1.4E-08 3E-13 108.3 21.1 196 51-290 21-247 (317)
27 cd06598 GH31_transferase_CtsZ 99.1 6.8E-09 1.5E-13 110.6 18.4 201 50-292 21-245 (317)
28 cd06601 GH31_lyase_GLase GLase 99.0 9.6E-09 2.1E-13 110.2 19.0 171 50-291 21-232 (332)
29 cd06589 GH31 The enzymes of gl 99.0 4.8E-08 1E-12 101.5 19.8 168 32-291 2-199 (265)
30 cd06603 GH31_GANC_GANAB_alpha 98.9 5.3E-08 1.1E-12 104.8 18.7 197 50-291 21-250 (339)
31 COG1501 Alpha-glucosidases, fa 98.9 2.2E-08 4.8E-13 117.5 17.1 210 31-289 256-492 (772)
32 PLN02763 hydrolase, hydrolyzin 98.9 1.2E-07 2.6E-12 112.8 21.9 211 31-290 178-428 (978)
33 PRK10426 alpha-glucosidase; Pr 98.8 2.3E-07 5.1E-12 107.4 18.0 216 31-289 199-443 (635)
34 KOG2366 Alpha-D-galactosidase 98.4 3.2E-08 6.9E-13 105.1 -2.0 272 209-524 37-315 (414)
35 PF10566 Glyco_hydro_97: Glyco 98.1 1.6E-05 3.6E-10 82.9 11.3 130 47-251 26-156 (273)
36 KOG1065 Maltase glucoamylase a 97.6 0.00037 8E-09 81.3 11.3 149 37-221 293-446 (805)
37 cd06596 GH31_CPE1046 CPE1046 i 95.0 0.077 1.7E-06 55.2 7.8 104 119-292 76-184 (261)
38 PF02638 DUF187: Glycosyl hydr 94.4 0.87 1.9E-05 48.8 14.5 173 51-252 17-229 (311)
39 TIGR01515 branching_enzym alph 94.3 0.6 1.3E-05 54.6 13.9 142 51-222 154-297 (613)
40 PF13200 DUF4015: Putative gly 93.0 0.82 1.8E-05 49.2 11.1 84 119-222 62-146 (316)
41 KOG1066 Glucosidase II catalyt 92.3 0.46 1E-05 55.2 8.4 138 31-207 349-491 (915)
42 COG0296 GlgB 1,4-alpha-glucan 90.8 1.1 2.4E-05 52.3 9.6 133 55-223 163-306 (628)
43 PRK09441 cytoplasmic alpha-amy 90.6 7.5 0.00016 44.1 16.0 53 190-244 202-255 (479)
44 PLN00196 alpha-amylase; Provis 89.5 4.4 9.6E-05 45.5 12.8 33 190-222 172-205 (428)
45 PRK12568 glycogen branching en 89.2 8.1 0.00018 46.2 15.2 140 55-222 268-410 (730)
46 PF14871 GHL6: Hypothetical gl 89.0 3.6 7.8E-05 38.7 9.9 123 62-220 5-131 (132)
47 PRK14706 glycogen branching en 88.9 5.3 0.00012 47.1 13.4 141 55-222 166-308 (639)
48 PLN02784 alpha-amylase 88.4 5.6 0.00012 48.1 13.1 33 190-222 642-675 (894)
49 PRK14705 glycogen branching en 88.2 5.7 0.00012 50.0 13.6 132 63-222 772-906 (1224)
50 PLN02960 alpha-amylase 88.1 7.6 0.00016 47.1 14.0 131 64-222 424-558 (897)
51 TIGR02104 pulA_typeI pullulana 87.9 4 8.6E-05 47.8 11.6 56 191-248 289-345 (605)
52 smart00812 Alpha_L_fucos Alpha 87.8 4.9 0.00011 44.5 11.5 21 120-140 130-150 (384)
53 PRK12313 glycogen branching en 87.7 8.5 0.00018 45.3 14.1 131 64-222 178-311 (633)
54 TIGR02403 trehalose_treC alpha 85.4 14 0.0003 42.8 14.0 33 190-222 163-195 (543)
55 TIGR02402 trehalose_TreZ malto 83.3 17 0.00036 42.2 13.4 106 118-245 160-271 (542)
56 PF02806 Alpha-amylase_C: Alph 82.8 13 0.00028 32.1 9.7 72 552-634 9-94 (95)
57 PF14509 GH97_C: Glycosyl-hydr 82.8 7.4 0.00016 35.1 8.2 73 554-635 16-103 (103)
58 PF01120 Alpha_L_fucos: Alpha- 82.6 9.1 0.0002 41.6 10.5 22 120-141 140-161 (346)
59 PRK05402 glycogen branching en 82.4 18 0.00039 43.4 13.7 141 56-222 265-406 (726)
60 TIGR02103 pullul_strch alpha-1 82.4 11 0.00024 46.2 11.9 57 191-249 466-523 (898)
61 PRK10933 trehalose-6-phosphate 82.4 8.9 0.00019 44.4 10.8 33 190-222 170-202 (551)
62 PLN02361 alpha-amylase 82.1 19 0.00042 40.1 12.9 34 190-223 148-182 (401)
63 PRK10785 maltodextrin glucosid 81.6 23 0.0005 41.5 14.0 175 51-248 177-369 (598)
64 PLN02447 1,4-alpha-glucan-bran 79.4 14 0.00029 44.5 11.1 134 64-222 258-392 (758)
65 PF08533 Glyco_hydro_42C: Beta 79.3 2.4 5.1E-05 33.9 3.4 50 561-632 8-57 (58)
66 PLN02877 alpha-amylase/limit d 78.8 26 0.00057 43.3 13.4 57 192-250 530-595 (970)
67 TIGR02456 treS_nterm trehalose 78.8 43 0.00093 38.7 14.8 68 554-633 470-538 (539)
68 PF10438 Cyc-maltodext_C: Cycl 75.8 17 0.00037 31.2 7.9 71 551-633 8-78 (78)
69 TIGR02102 pullulan_Gpos pullul 66.6 44 0.00095 42.1 11.6 56 191-248 612-668 (1111)
70 COG1523 PulA Type II secretory 66.4 31 0.00067 41.2 9.9 105 101-222 251-361 (697)
71 TIGR02456 treS_nterm trehalose 64.4 19 0.00041 41.6 7.6 33 190-222 167-199 (539)
72 TIGR02455 TreS_stutzeri trehal 64.3 32 0.0007 40.6 9.3 74 551-635 607-683 (688)
73 PF01791 DeoC: DeoC/LacD famil 63.2 40 0.00088 34.3 9.0 50 201-250 147-200 (236)
74 COG1649 Uncharacterized protei 62.8 1.5E+02 0.0033 33.3 13.9 121 120-252 117-272 (418)
75 PF11941 DUF3459: Domain of un 60.4 35 0.00075 28.9 6.8 55 557-631 35-89 (89)
76 cd02875 GH18_chitobiase Chitob 57.7 57 0.0012 35.7 9.5 56 196-251 94-157 (358)
77 PLN03244 alpha-amylase; Provis 53.8 26 0.00057 42.2 6.3 89 119-222 442-533 (872)
78 KOG0470 1,4-alpha-glucan branc 51.7 37 0.0008 40.4 7.0 143 58-222 256-404 (757)
79 PF00128 Alpha-amylase: Alpha 51.5 28 0.00061 35.6 5.6 54 189-244 137-190 (316)
80 PF13199 Glyco_hydro_66: Glyco 50.9 52 0.0011 38.4 8.1 200 120-360 172-392 (559)
81 PF07302 AroM: AroM protein; 50.5 22 0.00047 36.5 4.4 143 49-251 66-210 (221)
82 cd06522 GH25_AtlA-like AtlA is 49.5 23 0.00049 35.1 4.4 67 46-141 63-133 (192)
83 KOG3111 D-ribulose-5-phosphate 49.1 18 0.00039 36.4 3.5 27 119-145 100-126 (224)
84 PF03102 NeuB: NeuB family; I 48.9 37 0.00081 35.2 6.0 17 119-135 57-73 (241)
85 cd00161 RICIN Ricin-type beta- 48.9 31 0.00068 29.7 4.8 47 493-544 51-101 (124)
86 cd02803 OYE_like_FMN_family Ol 47.8 2.3E+02 0.0049 30.1 12.0 32 48-79 129-163 (327)
87 TIGR02100 glgX_debranch glycog 47.7 81 0.0018 37.7 9.3 34 190-223 310-344 (688)
88 TIGR01370 cysRS possible cyste 47.4 3.2E+02 0.007 29.6 12.9 35 189-223 136-170 (315)
89 PRK03705 glycogen debranching 47.3 79 0.0017 37.7 9.0 33 190-222 305-338 (658)
90 PF02571 CbiJ: Precorrin-6x re 47.2 1.2E+02 0.0025 31.7 9.4 62 190-251 70-138 (249)
91 PF14488 DUF4434: Domain of un 47.1 40 0.00087 32.9 5.6 74 47-140 14-89 (166)
92 PRK14510 putative bifunctional 45.9 1.2E+02 0.0026 38.8 10.8 57 191-247 313-370 (1221)
93 PRK13840 sucrose phosphorylase 44.2 55 0.0012 37.6 6.8 59 190-248 163-232 (495)
94 cd02871 GH18_chitinase_D-like 44.1 2.2E+02 0.0049 30.3 11.2 55 198-252 95-155 (312)
95 TIGR03326 rubisco_III ribulose 44.0 44 0.00095 37.5 5.9 50 202-251 162-218 (412)
96 PF00016 RuBisCO_large: Ribulo 43.5 49 0.0011 35.7 6.0 50 202-251 32-88 (309)
97 TIGR03569 NeuB_NnaB N-acetylne 43.4 47 0.001 36.1 5.9 17 118-134 76-92 (329)
98 cd06414 GH25_LytC-like The Lyt 43.1 20 0.00044 35.3 2.9 75 45-142 62-137 (191)
99 cd06546 GH18_CTS3_chitinase GH 43.0 2.3E+02 0.0049 29.5 10.8 53 198-252 97-150 (256)
100 COG3469 Chitinase [Carbohydrat 42.7 52 0.0011 34.6 5.7 55 198-252 119-180 (332)
101 cd06545 GH18_3CO4_chitinase Th 40.2 1.9E+02 0.0041 29.7 9.6 50 199-251 85-138 (253)
102 cd06522 GH25_AtlA-like AtlA is 40.0 3.6E+02 0.0078 26.6 11.2 19 120-138 44-62 (192)
103 cd08148 RuBisCO_large Ribulose 39.7 49 0.0011 36.5 5.4 51 202-252 145-202 (366)
104 cd02931 ER_like_FMN Enoate red 39.4 1.3E+02 0.0028 33.3 8.7 81 48-140 138-227 (382)
105 cd08209 RLP_DK-MTP-1-P-enolase 39.3 50 0.0011 36.8 5.4 51 202-252 142-199 (391)
106 COG1663 LpxK Tetraacyldisaccha 39.2 1.1E+02 0.0023 33.5 7.7 83 120-221 66-149 (336)
107 TIGR03852 sucrose_gtfA sucrose 39.1 58 0.0013 37.2 6.0 32 191-222 160-191 (470)
108 PRK06852 aldolase; Validated 38.7 1.5E+02 0.0033 32.0 8.7 48 201-250 189-237 (304)
109 cd06416 GH25_Lys1-like Lys-1 i 38.5 23 0.00051 35.0 2.5 23 119-141 111-133 (196)
110 cd03465 URO-D_like The URO-D _ 37.9 1.2E+02 0.0027 32.0 8.1 51 65-139 176-229 (330)
111 TIGR03332 salvage_mtnW 2,3-dik 37.6 57 0.0012 36.6 5.5 51 202-252 157-214 (407)
112 PRK13523 NADPH dehydrogenase N 37.4 91 0.002 33.9 7.0 73 48-138 130-214 (337)
113 PRK09549 mtnW 2,3-diketo-5-met 36.9 59 0.0013 36.4 5.6 50 203-252 153-209 (407)
114 cd08207 RLP_NonPhot Ribulose b 36.7 60 0.0013 36.4 5.6 51 202-252 161-218 (406)
115 cd08213 RuBisCO_large_III Ribu 36.3 61 0.0013 36.4 5.5 51 202-252 149-206 (412)
116 KOG3340 Alpha-L-fucosidase [Ca 35.8 43 0.00094 36.3 4.0 22 120-141 152-173 (454)
117 PRK13398 3-deoxy-7-phosphohept 35.7 1.7E+02 0.0038 30.7 8.6 18 118-135 78-95 (266)
118 PRK13397 3-deoxy-7-phosphohept 35.5 2.1E+02 0.0045 30.0 9.0 39 206-251 92-130 (250)
119 KOG2672 Lipoate synthase [Coen 34.6 55 0.0012 34.8 4.5 31 190-226 138-168 (360)
120 PRK08883 ribulose-phosphate 3- 34.5 5.1E+02 0.011 26.4 12.4 107 51-255 10-118 (220)
121 cd08206 RuBisCO_large_I_II_III 34.4 68 0.0015 36.1 5.5 50 203-252 151-207 (414)
122 PF02055 Glyco_hydro_30: O-Gly 34.0 1.9E+02 0.0042 33.2 9.2 54 553-631 440-493 (496)
123 cd08208 RLP_Photo Ribulose bis 33.9 64 0.0014 36.3 5.2 49 203-251 179-234 (424)
124 COG1850 RbcL Ribulose 1,5-bisp 33.9 99 0.0022 34.4 6.5 45 207-251 178-229 (429)
125 PRK09936 hypothetical protein; 33.8 1.1E+02 0.0024 32.8 6.6 71 40-142 26-98 (296)
126 TIGR01463 mtaA_cmuA methyltran 33.7 1.4E+02 0.0031 31.9 7.8 52 64-139 187-241 (340)
127 PRK04208 rbcL ribulose bisopho 33.3 82 0.0018 36.0 6.0 50 202-251 178-234 (468)
128 PF05913 DUF871: Bacterial pro 32.2 1E+02 0.0022 34.0 6.3 38 207-252 83-120 (357)
129 PF02449 Glyco_hydro_42: Beta- 31.9 71 0.0015 34.9 5.2 61 50-139 7-68 (374)
130 cd08210 RLP_RrRLP Ribulose bis 31.8 98 0.0021 34.2 6.2 50 202-251 143-199 (364)
131 COG1830 FbaB DhnA-type fructos 31.3 3.4E+02 0.0073 28.8 9.6 44 202-252 168-211 (265)
132 cd08212 RuBisCO_large_I Ribulo 30.9 88 0.0019 35.5 5.7 50 202-251 163-219 (450)
133 CHL00040 rbcL ribulose-1,5-bis 30.4 91 0.002 35.7 5.7 50 202-251 185-241 (475)
134 PTZ00170 D-ribulose-5-phosphat 29.9 6.1E+02 0.013 25.8 13.1 45 206-254 81-125 (228)
135 PRK08227 autoinducer 2 aldolas 29.7 3.2E+02 0.007 28.8 9.3 42 201-251 159-200 (264)
136 PF00652 Ricin_B_lectin: Ricin 29.0 55 0.0012 28.6 3.1 44 496-544 57-104 (124)
137 cd06549 GH18_trifunctional GH1 28.7 1.4E+02 0.0031 31.5 6.7 56 195-250 85-145 (298)
138 cd06544 GH18_narbonin Narbonin 28.7 1.9E+02 0.004 30.2 7.4 45 198-243 98-146 (253)
139 cd02933 OYE_like_FMN Old yello 28.0 7.9E+02 0.017 26.6 12.4 78 48-137 140-224 (338)
140 PF06964 Alpha-L-AF_C: Alpha-L 27.8 1.2E+02 0.0025 29.5 5.4 28 561-588 101-128 (177)
141 smart00642 Aamy Alpha-amylase 27.4 1.3E+02 0.0027 29.3 5.5 19 118-136 70-88 (166)
142 cd00598 GH18_chitinase-like Th 27.1 5.8E+02 0.013 24.7 13.1 55 198-252 89-148 (210)
143 cd02930 DCR_FMN 2,4-dienoyl-Co 27.0 2.1E+02 0.0045 31.2 7.7 30 48-77 125-157 (353)
144 cd06548 GH18_chitinase The GH1 26.8 1.4E+02 0.003 32.0 6.2 53 199-251 111-181 (322)
145 cd00465 URO-D_CIMS_like The UR 26.3 2.4E+02 0.0052 29.4 7.8 103 53-249 140-248 (306)
146 cd02874 GH18_CFLE_spore_hydrol 25.8 1.4E+02 0.0029 31.7 5.9 54 199-252 89-146 (313)
147 cd03471 Rieske_cytochrome_b6f 25.1 78 0.0017 29.7 3.4 41 517-571 72-112 (126)
148 PF09260 DUF1966: Domain of un 25.1 3.5E+02 0.0076 23.8 7.3 66 558-631 11-79 (91)
149 cd02932 OYE_YqiM_FMN Old yello 25.0 2.8E+02 0.0062 29.8 8.3 76 48-138 142-228 (336)
150 PRK06769 hypothetical protein; 24.9 1.4E+02 0.0029 28.9 5.2 21 119-139 32-52 (173)
151 cd08211 RuBisCO_large_II Ribul 24.6 1.3E+02 0.0028 34.1 5.6 50 202-252 175-231 (439)
152 smart00458 RICIN Ricin-type be 24.1 1.3E+02 0.0028 26.0 4.6 46 493-544 45-94 (117)
153 cd06415 GH25_Cpl1-like Cpl-1 l 24.1 7E+02 0.015 24.6 12.2 19 120-138 40-58 (196)
154 PRK10558 alpha-dehydro-beta-de 24.0 5.8E+02 0.013 26.6 10.0 45 206-251 33-77 (256)
155 PF01183 Glyco_hydro_25: Glyco 23.7 1E+02 0.0022 29.9 4.1 73 44-141 55-130 (181)
156 cd04735 OYE_like_4_FMN Old yel 23.6 2.3E+02 0.0049 30.9 7.2 81 47-139 131-223 (353)
157 COG3669 Alpha-L-fucosidase [Ca 23.6 4.1E+02 0.0088 29.9 8.9 23 120-142 103-125 (430)
158 cd08577 PI-PLCc_GDPD_SF_unchar 23.6 1.7E+02 0.0036 30.1 5.8 21 120-140 187-207 (228)
159 PF00834 Ribul_P_3_epim: Ribul 23.6 1E+02 0.0022 31.1 4.2 28 119-146 93-120 (201)
160 cd04733 OYE_like_2_FMN Old yel 23.3 3E+02 0.0065 29.7 8.0 79 48-138 137-223 (338)
161 PRK13475 ribulose bisphosphate 23.2 1.5E+02 0.0032 33.8 5.7 51 200-252 175-232 (443)
162 PRK08005 epimerase; Validated 23.1 8.1E+02 0.018 24.9 12.1 108 51-255 11-118 (210)
163 TIGR03586 PseI pseudaminic aci 22.9 2.2E+02 0.0048 31.0 6.9 15 120-134 79-93 (327)
164 PRK08745 ribulose-phosphate 3- 22.8 8.3E+02 0.018 25.0 12.2 107 51-255 14-122 (223)
165 cd06415 GH25_Cpl1-like Cpl-1 l 22.7 96 0.0021 30.7 3.8 23 119-141 109-131 (196)
166 cd08605 GDPD_GDE5_like_1_plant 22.7 1.5E+02 0.0033 30.9 5.5 17 206-222 266-282 (282)
167 TIGR00060 L18_bact ribosomal p 22.7 1.2E+02 0.0026 28.0 4.1 51 51-134 64-114 (114)
168 COG3867 Arabinogalactan endo-1 22.6 4E+02 0.0086 29.0 8.3 50 66-136 72-122 (403)
169 COG3325 ChiA Chitinase [Carboh 22.5 2.7E+02 0.0059 31.5 7.4 66 186-251 140-223 (441)
170 cd08607 GDPD_GDE5 Glycerophosp 22.4 1.4E+02 0.003 31.2 5.1 17 206-222 274-290 (290)
171 PF07771 TSGP1: Tick salivary 22.1 57 0.0012 30.4 1.9 44 1-46 1-44 (120)
172 PRK07534 methionine synthase I 22.1 2.5E+02 0.0054 30.6 7.0 54 194-251 125-178 (336)
173 cd02879 GH18_plant_chitinase_c 22.0 1.8E+02 0.0039 30.9 5.9 54 198-251 93-156 (299)
174 cd06523 GH25_PlyB-like PlyB is 21.9 1.3E+02 0.0029 29.3 4.6 67 44-141 58-125 (177)
175 PRK12858 tagatose 1,6-diphosph 21.0 7E+02 0.015 27.3 10.2 49 201-249 185-247 (340)
176 cd02872 GH18_chitolectin_chito 20.4 1.8E+02 0.0039 31.5 5.6 53 199-251 98-159 (362)
177 cd01948 EAL EAL domain. This d 20.3 3.8E+02 0.0082 26.2 7.6 44 206-249 160-208 (240)
178 TIGR03128 RuMP_HxlA 3-hexulose 20.2 3.9E+02 0.0084 26.2 7.6 18 120-137 91-108 (206)
179 PRK06233 hypothetical protein; 20.1 1.8E+02 0.004 32.0 5.7 36 46-82 158-196 (372)
180 COG2200 Rtn c-di-GMP phosphodi 20.1 5.4E+02 0.012 26.5 8.9 46 206-251 164-214 (256)
No 1
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=5.7e-158 Score=1295.71 Aligned_cols=609 Identities=76% Similarity=1.277 Sum_probs=576.0
Q ss_pred cccccCCCCCCCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCC
Q 006666 24 SISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGR 103 (636)
Q Consensus 24 ~~~~~~~~~a~tPPmGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~ 103 (636)
...++++++|+|||||||||+.|+|+|||++|+++||+|++||+++||+||||||||+...+.|.|.++.|++.||++|+
T Consensus 19 ~~~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~Gr 98 (633)
T PLN02899 19 IGASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGR 98 (633)
T ss_pred ccccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCCC
Confidence 34557889999999999999999999999999999999999999999999999999998766677778888899999999
Q ss_pred cccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccc
Q 006666 104 MIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAW 183 (636)
Q Consensus 104 l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~ 183 (636)
++|||+|||++++|+|||+||||||+||||||||+++|+++||++.++||+|+.+|+.|++++++|+++||+.+..+|.|
T Consensus 99 LvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w 178 (633)
T PLN02899 99 PIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAW 178 (633)
T ss_pred CccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCCCCChhhhhh
Q 006666 184 MQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKE 263 (636)
Q Consensus 184 ~~~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls~g~~~~~~~a~~ 263 (636)
++.+|+.+|.++|++|+||++++++||+|||||||+|+|+++.+++++|++|++||+++||||+||+|||...+|.|+..
T Consensus 179 ~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~~~ey~~ms~AL~aTGRPIvySLspG~~~~p~wa~~ 258 (633)
T PLN02899 179 MSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDFDLEEITYVSEVLKELDRPIVYSLSPGTSATPTMAKE 258 (633)
T ss_pred CCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCCChHHHHHHHHHHHHhCCCeEEEecCCcccchhhhhh
Confidence 99999999999999999999999999999999999999988778889999999999999999999999988777888888
Q ss_pred hccccceEEecCCCcCchHHHHHHHHhhhhhhhhhhhcccCCCCCccCCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHH
Q 006666 264 VSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRT 343 (636)
Q Consensus 264 ~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~~~lT~~E~rT 343 (636)
+.+++|||||++||+|.|.++..+++..+.|+.++.++++|++|++|||||||+||.+++++.+.|++|.++||.+|+||
T Consensus 259 v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~rT 338 (633)
T PLN02899 259 VSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQKT 338 (633)
T ss_pred hhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHHH
Confidence 88999999999999999999999999988888766777777777899999999999998888788899999999999999
Q ss_pred HHHHHHHhcCCccccCCCCCCCHHHHhhccChhhhhhccCCCCCCCccccccccCCCcccc--cCCCCCccccccccccc
Q 006666 344 QMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIK--VTPPHLSEVAESNTHVL 421 (636)
Q Consensus 344 ~~slWa~~~SPLiiG~DL~~l~~~~l~lLtN~EvIaInQd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 421 (636)
|||||||++||||+|+||++|++++++||||+||||||||+.+++++++++..+ ++.++ ...+ +.+.+...+.+
T Consensus 339 hfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~ 414 (633)
T PLN02899 339 QMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFPYVTSTR--RNKKKSHSQHS--TGVGKSDPSVL 414 (633)
T ss_pred HHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeeeeEeccc--ccccccccccc--ccCCCCCcceE
Confidence 999999999999999999999999999999999999999999999999999876 23222 2222 66778888999
Q ss_pred cccccCCCCCCccccccccchhhhhhhcCCCCCCCCCceecccccccccCCcchhhhccccceEEEeecCCccccccCCc
Q 006666 422 GLTSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASP 501 (636)
Q Consensus 422 ~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 501 (636)
||++|++++.++|++++.+|+.++||||..+.+..+.|||++|+.++++||+++++++++|+++|+.++++.++|||+||
T Consensus 415 ~l~~c~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 494 (633)
T PLN02899 415 GLTSCKDSKANGWSIRSLDKDLDQICWNEKMGRRGEEPLCLYKTKPLLASDEEIIHNSEYQGKLHLLTSDGGELCLDASP 494 (633)
T ss_pred EEEecCCCCCCceeEEecCCCcceeeccccccccCCCCeeeecccCCcccchhhhhcccccceEEeeeccccChhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhccccccccccccc---cCCCCCccccCCCcceEEeeeccccCCCCeeEEEEeCCCCcEEEEEEeCCCCCe
Q 006666 502 KWKLTSKELRRGSFSKCKRDANQ---LNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFFNLNTEKT 578 (636)
Q Consensus 502 ~~~~~~~~~~~~~~~~c~~~~~q---~~~~g~l~~~~s~~c~~v~~~~~~~~~~~~~vW~~~~~~g~~~va~fN~~~~~~ 578 (636)
++++|++|+++++||+|+||+|| ||+||+|+++||||||+|+.+.+.+.+++.|+|++++++|+|||||||++++.+
T Consensus 495 ~~~~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~~g~~y~~~fnl~~~~~ 574 (633)
T PLN02899 495 KQKRTSKDFRSGSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATGRKGEIYVAFFNLNQEKT 574 (633)
T ss_pred CCCcCHhHhhccccCCCCCChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcCCCccEEEEEEecCccce
Confidence 99999999999999999999999 999999999999999999999999889999999999999999999999999999
Q ss_pred EEEEecccccccCCC-CCCCCCceeEEeccCCCccceeccEEEEEEcCcceEEEEEecC
Q 006666 579 LISTKISDLAKALPG-KNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALFVLNCD 636 (636)
Q Consensus 579 ~it~~l~dl~~~l~g-~~~~~~~~~~~dlW~~~~~g~~~~~~~~~v~~hg~~l~~l~p~ 636 (636)
+|++.|+||.++|++ +..+...|+.+|||++|++|.++++++++|++|||+||+|+|.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~c~~~e~w~~~~~~~~~~~~~~~v~~hg~~~~~~~c~ 633 (633)
T PLN02899 575 KISAKISDLAKALPGSKNLRTSSCTGHEVWSGKDFGVIKDSISATVEIHGCALFVLHCS 633 (633)
T ss_pred eEEEEhhHhHhhccccccccccccceEEeccCCCcccccccEEEEeecCceEEEEEeCC
Confidence 999999999999988 5666789999999999999999999999999999999999995
No 2
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=3.2e-96 Score=790.29 Aligned_cols=360 Identities=27% Similarity=0.475 Sum_probs=311.5
Q ss_pred CCCCCCCCceEecCcccccccCCHHHHHHHHHH-HHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccC
Q 006666 29 VPVRASSPPRGWNSYDSFCWTISEEEFLQSAEI-ISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD 107 (636)
Q Consensus 29 ~~~~a~tPPmGWNSW~~~~~~ItE~~v~~~Ad~-ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd 107 (636)
++++++|||||||||+.|+|+|||+.|+++||. +++||+++||+||+|||||+... ||++|+|+||
T Consensus 56 ~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~l~~d 122 (427)
T PLN02229 56 NNGLARTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLK-------------RDSKGQLVPD 122 (427)
T ss_pred cCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCC-------------cCCCCCEEEC
Confidence 578999999999999999999999999999996 57899999999999999999652 5789999999
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCC
Q 006666 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (636)
Q Consensus 108 ~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~ 187 (636)
++|||+ |||+|+||||+||||||||+++|+.+|+..+++
T Consensus 123 ~~rFP~-----G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS------------------------------------ 161 (427)
T PLN02229 123 PKTFPS-----GIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGS------------------------------------ 161 (427)
T ss_pred hhhcCC-----cHHHHHHHHHHCCCceEEeccCCCcccCCCCCC------------------------------------
Confidence 999998 999999999999999999999999887643332
Q ss_pred ceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCC-hHHHHHHHHHHHhcCCCeEEEcCC-CCCCChhhhhhhc
Q 006666 188 FMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSP-GTGVTPAMAKEVS 265 (636)
Q Consensus 188 ~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~-~~~~~am~~Al~~~GrpI~lSls~-g~~~~~~~a~~~~ 265 (636)
..|++.++++||+|||||||+|+|+....+ .++|.+|++||+++||||+||+|+ |...+..|+ .
T Consensus 162 -----------~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w~---~ 227 (427)
T PLN02229 162 -----------LFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWA---G 227 (427)
T ss_pred -----------ccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHHH---H
Confidence 235566789999999999999999865544 456999999999999999999997 443333454 4
Q ss_pred cccceEEecCCCcCchHHHHHHHHhhhhhhhhhhhcccCCCCCccCCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHH
Q 006666 266 GLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQM 345 (636)
Q Consensus 266 ~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~~~lT~~E~rT~~ 345 (636)
+++|||||++||+|.|.++.++++....|+.+ +| ||+|||||||+||. .+||.+|+||||
T Consensus 228 ~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~~-----ag--PG~wnDpDML~vGn-------------~glT~~E~rthf 287 (427)
T PLN02229 228 KVGNSWRTTDDINDTWASMTTIADLNNKWAAY-----AG--PGGWNDPDMLEVGN-------------GGMTYEEYRGHF 287 (427)
T ss_pred hhcCeeeccCCcccccccHHHHHHHHHHHHhh-----cC--CCCCCCCCeeeeCC-------------CCCCHHHHHHHH
Confidence 67899999999999999999999988888753 33 48999999999994 269999999999
Q ss_pred HHHHHhcCCccccCCCCCCCHHHHhhccChhhhhhccCCCCCCCccccccccCCCcccccCCCCCccccccccccccccc
Q 006666 346 TLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLGLTS 425 (636)
Q Consensus 346 slWa~~~SPLiiG~DL~~l~~~~l~lLtN~EvIaInQd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 425 (636)
|||||++||||+|+||++|++++++||||+||||||||+++.+.. .+..
T Consensus 288 sLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~qg~-~v~~------------------------------ 336 (427)
T PLN02229 288 SIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQGR-KIQA------------------------------ 336 (427)
T ss_pred HHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcccccccCcE-EEEe------------------------------
Confidence 999999999999999999999999999999999999998653331 0000
Q ss_pred cCCCCCCccccccccchhhhhhhcCCCCCCCCCceecccccccccCCcchhhhccccceEEEeecCCccccccCCccccc
Q 006666 426 CKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPKWKL 505 (636)
Q Consensus 426 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 505 (636)
T Consensus 337 -------------------------------------------------------------------------------- 336 (427)
T PLN02229 337 -------------------------------------------------------------------------------- 336 (427)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhccccccccccccccCCCCCccccCCCcceEEeeeccccCCCCeeEEEEeCCCCcEEEEEEeCCCCCeEEEEecc
Q 006666 506 TSKELRRGSFSKCKRDANQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFFNLNTEKTLISTKIS 585 (636)
Q Consensus 506 ~~~~~~~~~~~~c~~~~~q~~~~g~l~~~~s~~c~~v~~~~~~~~~~~~~vW~~~~~~g~~~va~fN~~~~~~~it~~l~ 585 (636)
....+..+||++++++|++||||||+++++++|+++|+
T Consensus 337 ------------------------------------------~~~~~~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~ 374 (427)
T PLN02229 337 ------------------------------------------NGKNGCQQVWAGPLSGDRLVVALWNRCSEPATITASWD 374 (427)
T ss_pred ------------------------------------------cCCCCceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHH
Confidence 00113479999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCceeEEeccCCCccc-eeccEEEEEEcCcceEEEEEec
Q 006666 586 DLAKALPGKNLNGASCKCREVWSAKDYG-VLQQTLSTAVGMHGCALFVLNC 635 (636)
Q Consensus 586 dl~~~l~g~~~~~~~~~~~dlW~~~~~g-~~~~~~~~~v~~hg~~l~~l~p 635 (636)
+||+ .+ ...++|||||+|+++| .++++|+++|++|||+||+|+|
T Consensus 375 ~lGl--~~----~~~~~VrDLW~~~dlg~~~~~~~~~~v~~Hg~~l~rl~~ 419 (427)
T PLN02229 375 VIGL--ES----SISVSVRDLWKHKDLSENVVGSFGAQVDAHDCHMYIFTP 419 (427)
T ss_pred HcCC--CC----CCceEEEECCCCCccCccccceEEEEECCCeEEEEEEec
Confidence 9985 33 1358999999999998 4778999999999999999997
No 3
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=2.5e-95 Score=780.39 Aligned_cols=360 Identities=25% Similarity=0.451 Sum_probs=314.8
Q ss_pred cCCCCCCCCceEecCcccccccCCHHHHHHHHHH-HHhccccCCceEEEecccccccccCCccccCCCcccccCCCCccc
Q 006666 28 AVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEI-ISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (636)
Q Consensus 28 ~~~~~a~tPPmGWNSW~~~~~~ItE~~v~~~Ad~-ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~p 106 (636)
..+++|+|||||||||++|+|+|+|+.|+++||. ++.||+++||+||+|||||+... ||++|+|+|
T Consensus 48 ~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~~~~ 114 (412)
T PLN02692 48 LANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-------------RDEKGNLVP 114 (412)
T ss_pred ccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-------------CCCCCCeee
Confidence 3569999999999999999999999999999995 47899999999999999999753 578899999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCC
Q 006666 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQH 186 (636)
Q Consensus 107 d~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~ 186 (636)
|++|||+ |||+||||||+||||||||+++|..+|+.
T Consensus 115 d~~kFP~-----G~k~ladyiH~~GLKfGIy~d~G~~tC~~--------------------------------------- 150 (412)
T PLN02692 115 KKSTFPS-----GIKALADYVHSKGLKLGIYSDAGYFTCSK--------------------------------------- 150 (412)
T ss_pred ChhhcCC-----cHHHHHHHHHHCCCceEEEecCCccccCC---------------------------------------
Confidence 9999998 99999999999999999999999876631
Q ss_pred CceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCCh-HHHHHHHHHHHhcCCCeEEEcCCCCCC-Chhhhhhh
Q 006666 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDI-NEISFVSEVLKELDRPIVYSLSPGTGV-TPAMAKEV 264 (636)
Q Consensus 187 ~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~~-~~~~am~~Al~~~GrpI~lSls~g~~~-~~~~a~~~ 264 (636)
..|+.+.|+++++++||+|||||||+|+|+.....+ ++|++|++||+++||||+||+|+++.. +..|+
T Consensus 151 -------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~~p~~w~--- 220 (412)
T PLN02692 151 -------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLCEWGDMHPALWG--- 220 (412)
T ss_pred -------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEecCCCcCChhhhh---
Confidence 124568899999999999999999999998655443 779999999999999999999985543 33454
Q ss_pred ccccceEEecCCCcCchHHHHHHHHhhhhhhhhhhhcccCCCCCccCCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHH
Q 006666 265 SGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQ 344 (636)
Q Consensus 265 ~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~~~lT~~E~rT~ 344 (636)
.+++|+|||++||++.|.++..+++....|+.+ +| ||+|||||||+||. .+||.+|+|||
T Consensus 221 ~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~~-----ag--PG~wnDpDML~VGn-------------~glT~~E~rTh 280 (412)
T PLN02692 221 SKVGNSWRTTNDISDTWDSMISRADMNEVYAEL-----AR--PGGWNDPDMLEVGN-------------GGMTKDEYIVH 280 (412)
T ss_pred hhcCCccccccccccchHhHHHHHHHHHHHhhc-----cC--CCCCCCCCeEeECC-------------CCCCHHHHHHH
Confidence 467899999999999999999999887777643 33 48999999999994 36999999999
Q ss_pred HHHHHHhcCCccccCCCCCCCHHHHhhccChhhhhhccCCCCCCCccccccccCCCcccccCCCCCcccccccccccccc
Q 006666 345 MTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLGLT 424 (636)
Q Consensus 345 ~slWa~~~SPLiiG~DL~~l~~~~l~lLtN~EvIaInQd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (636)
||||||++||||+|+||+++++++++||||+||||||||+++.++. .+.
T Consensus 281 fsLWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~-~v~------------------------------ 329 (412)
T PLN02692 281 FSIWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAK-KVR------------------------------ 329 (412)
T ss_pred HHHHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcE-EEE------------------------------
Confidence 9999999999999999999999999999999999999998653331 000
Q ss_pred ccCCCCCCccccccccchhhhhhhcCCCCCCCCCceecccccccccCCcchhhhccccceEEEeecCCccccccCCcccc
Q 006666 425 SCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPKWK 504 (636)
Q Consensus 425 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 504 (636)
T Consensus 330 -------------------------------------------------------------------------------- 329 (412)
T PLN02692 330 -------------------------------------------------------------------------------- 329 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhccccccccccccccCCCCCccccCCCcceEEeeeccccCCCCeeEEEEeCCCCcEEEEEEeCCCCCeEEEEec
Q 006666 505 LTSKELRRGSFSKCKRDANQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFFNLNTEKTLISTKI 584 (636)
Q Consensus 505 ~~~~~~~~~~~~~c~~~~~q~~~~g~l~~~~s~~c~~v~~~~~~~~~~~~~vW~~~~~~g~~~va~fN~~~~~~~it~~l 584 (636)
..++.+||++++++|++||||||+++.+++|+++|
T Consensus 330 ---------------------------------------------~~~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~ 364 (412)
T PLN02692 330 ---------------------------------------------MEGDLEIWAGPLSGYRVALLLLNRGPWRNSITANW 364 (412)
T ss_pred ---------------------------------------------ecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEeH
Confidence 02458999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCceeEEeccCCCccc-eeccEEEEEEcCcceEEEEEecC
Q 006666 585 SDLAKALPGKNLNGASCKCREVWSAKDYG-VLQQTLSTAVGMHGCALFVLNCD 636 (636)
Q Consensus 585 ~dl~~~l~g~~~~~~~~~~~dlW~~~~~g-~~~~~~~~~v~~hg~~l~~l~p~ 636 (636)
++||+. + ...++|||||+|+++| .++++|+++|++|||+||||+|.
T Consensus 365 ~~lgl~--~----~~~~~vrDLW~~~~~g~~~~~~~~~~v~~Hg~~l~rl~~~ 411 (412)
T PLN02692 365 DDIGIP--A----NSIVEARDLWEHKTLKQHFVGNLTATVDSHACKMYILKPI 411 (412)
T ss_pred HHhCCC--C----CCceEEEECCCCCccCccccceEEEEECCceEEEEEEecC
Confidence 999853 2 1368999999999999 57899999999999999999983
No 4
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=7.7e-95 Score=774.86 Aligned_cols=362 Identities=27% Similarity=0.484 Sum_probs=317.5
Q ss_pred cccCCCCCCCCceEecCcccccccCCHHHHHHHHHHH-HhccccCCceEEEecccccccccCCccccCCCcccccCCCCc
Q 006666 26 SEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRM 104 (636)
Q Consensus 26 ~~~~~~~a~tPPmGWNSW~~~~~~ItE~~v~~~Ad~m-a~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l 104 (636)
....+++++|||||||||++|+|+|||+.|+++|+.| +.||+++||+||+|||||+... ||++|+|
T Consensus 22 ~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~-------------rd~~G~~ 88 (386)
T PLN02808 22 NLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELK-------------RDSQGNL 88 (386)
T ss_pred hcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCC-------------cCCCCCE
Confidence 4457799999999999999999999999999999987 6799999999999999999753 5788999
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhccccccccccc
Q 006666 105 IPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWM 184 (636)
Q Consensus 105 ~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~ 184 (636)
+||++|||+ |||+||||||++|||||||+++|..+|+.
T Consensus 89 ~~d~~rFP~-----G~~~lad~iH~~GlkfGiy~~~G~~tC~~------------------------------------- 126 (386)
T PLN02808 89 VPKASTFPS-----GIKALADYVHSKGLKLGIYSDAGTLTCSK------------------------------------- 126 (386)
T ss_pred eeChhhcCc-----cHHHHHHHHHHCCCceEEEecCCccccCC-------------------------------------
Confidence 999999998 99999999999999999999999876631
Q ss_pred CCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCC-hHHHHHHHHHHHhcCCCeEEEcCC-CCCCChhhhh
Q 006666 185 QHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSP-GTGVTPAMAK 262 (636)
Q Consensus 185 ~~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~-~~~~~am~~Al~~~GrpI~lSls~-g~~~~~~~a~ 262 (636)
.+|+.+.|+++++++||+|||||||+|+|+....+ .++|.+|++||+++||||+||+|+ |...+..|+.
T Consensus 127 ---------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~~p~~w~~ 197 (386)
T PLN02808 127 ---------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQEDPATWAG 197 (386)
T ss_pred ---------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCCCHHHHHH
Confidence 12456889999999999999999999999865443 467999999999999999999997 4444446653
Q ss_pred hhccccceEEecCCCcCchHHHHHHHHhhhhhhhhhhhcccCCCCCccCCCCCCCCcccCCCCCCCCCCCCCCCCHHHHH
Q 006666 263 EVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQR 342 (636)
Q Consensus 263 ~~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~~~lT~~E~r 342 (636)
+++|+|||++||++.|.++.++++....|+.+ +| ||+|||||||+||. .+||.+|+|
T Consensus 198 ---~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~~-----ag--PG~wnDpDML~vGn-------------~glt~~E~r 254 (386)
T PLN02808 198 ---DIGNSWRTTGDIQDNWDSMTSRADQNDRWASY-----AR--PGGWNDPDMLEVGN-------------GGMTTEEYR 254 (386)
T ss_pred ---hhcCcccccCCcccchhhHHHHHHhhhhhHhh-----cC--CCCCCCCCeeeECC-------------CCCCHHHHH
Confidence 67899999999999999999999887777643 34 48999999999994 269999999
Q ss_pred HHHHHHHHhcCCccccCCCCCCCHHHHhhccChhhhhhccCCCCCCCccccccccCCCcccccCCCCCcccccccccccc
Q 006666 343 TQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLG 422 (636)
Q Consensus 343 T~~slWa~~~SPLiiG~DL~~l~~~~l~lLtN~EvIaInQd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (636)
||||||||++||||+|+||++|++++++||+|+||||||||+++.++. .+.
T Consensus 255 thfsLWam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~-~v~---------------------------- 305 (386)
T PLN02808 255 SHFSIWALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGK-KVK---------------------------- 305 (386)
T ss_pred HHHHHHHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcE-EEE----------------------------
Confidence 999999999999999999999999999999999999999998643331 000
Q ss_pred ccccCCCCCCccccccccchhhhhhhcCCCCCCCCCceecccccccccCCcchhhhccccceEEEeecCCccccccCCcc
Q 006666 423 LTSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPK 502 (636)
Q Consensus 423 l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 502 (636)
T Consensus 306 -------------------------------------------------------------------------------- 305 (386)
T PLN02808 306 -------------------------------------------------------------------------------- 305 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhccccccccccccccCCCCCccccCCCcceEEeeeccccCCCCeeEEEEeCCCCcEEEEEEeCCCCCeEEEE
Q 006666 503 WKLTSKELRRGSFSKCKRDANQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFFNLNTEKTLIST 582 (636)
Q Consensus 503 ~~~~~~~~~~~~~~~c~~~~~q~~~~g~l~~~~s~~c~~v~~~~~~~~~~~~~vW~~~~~~g~~~va~fN~~~~~~~it~ 582 (636)
..++.+||++++++|+++|+|||++++++++++
T Consensus 306 -----------------------------------------------~~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~ 338 (386)
T PLN02808 306 -----------------------------------------------KDGDLEVWAGPLSKKRVAVVLWNRGSSRATITA 338 (386)
T ss_pred -----------------------------------------------ecCCeEEEEEECCCCCEEEEEEECCCCCEEEEE
Confidence 024689999999999999999999999999999
Q ss_pred ecccccccCCCCCCCCCceeEEeccCCCccceeccEEEEEEcCcceEEEEEecC
Q 006666 583 KISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALFVLNCD 636 (636)
Q Consensus 583 ~l~dl~~~l~g~~~~~~~~~~~dlW~~~~~g~~~~~~~~~v~~hg~~l~~l~p~ 636 (636)
+|++||+ .+ ...++|||||+|+++|.++++|+++|+||||+||||+|.
T Consensus 339 ~~~~lgl--~~----~~~~~vrDlWs~~~~g~~~~~~~~~v~pHg~~~~rlt~~ 386 (386)
T PLN02808 339 RWSDIGL--NS----SAVVNARDLWAHSTQSSVKGQLSALVESHACKMYVLTPR 386 (386)
T ss_pred EHHHhCC--CC----CCceEEEECCCCCccCcccceEEEEECCceEEEEEEeCC
Confidence 9999985 32 136999999999999999999999999999999999983
No 5
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=9.6e-95 Score=766.38 Aligned_cols=348 Identities=60% Similarity=1.134 Sum_probs=308.3
Q ss_pred CceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccc---cCCCcccccCCCCcccCCCCCC
Q 006666 36 PPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYV---DSLGFDVIDEWGRMIPDPDRWP 112 (636)
Q Consensus 36 PPmGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~---~~~~~~~~D~~G~l~pd~~kFP 112 (636)
|||||||||+|+|+|||++|+++||+|+++|+++||+||||||||+...+.|.+. .+.+...||++|+++||++|||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFP 80 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWP 80 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCC
Confidence 8999999999999999999999999889999999999999999999754322111 1223346899999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeec
Q 006666 113 SSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVN 192 (636)
Q Consensus 113 s~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD 192 (636)
++++|+|||+||||||+||||||||+++|+.+||+..++||+|+.....| .++++||+.+...|.|++++|..+|
T Consensus 81 s~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~-----~~~a~Dia~~~~~c~~~~~~~~~v~ 155 (357)
T PLN03231 81 STTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGH-----AWNAKDIALMDQACPWMQQCFVGVN 155 (357)
T ss_pred CCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCccccc-----ccchhhhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999987421222 3678999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCC-CChHHHHHHHHHHHhcCCCeEEEcCCCCCCChhhhhhhccccceE
Q 006666 193 TKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD-LDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMY 271 (636)
Q Consensus 193 ~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~-~~~~~~~am~~Al~~~GrpI~lSls~g~~~~~~~a~~~~~~an~w 271 (636)
.++|++|+|+++++++||+|||||||+|+|++.. ...++|.+|++||+++||||+||||+|...++.|+..+.+++|||
T Consensus 156 ~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~g~~~~~~~~~~i~~~an~W 235 (357)
T PLN03231 156 TSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGDGATPGLAARVAQLVNMY 235 (357)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecCCCCCCchhhhhhhhhcCcc
Confidence 9999999999999999999999999999997643 556889999999999999999999997766677888888899999
Q ss_pred EecCCCcCchHHHHHHHHhhhhhhhhhhhc---ccCCCCCccCCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 006666 272 RITGDDWDTWGDVAAHFNVSRDFSAANMIG---AKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLW 348 (636)
Q Consensus 272 Ris~Di~d~W~~i~~~~~~~~~w~~~~~~~---~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~~~lT~~E~rT~~slW 348 (636)
||++||++.|.++..+++..+.|+.+.... ++| ||+|||||||+||.+++++...|++|+++||.+|+|||||||
T Consensus 236 R~s~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~ag--pG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslW 313 (357)
T PLN03231 236 RVTGDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVG--GKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLW 313 (357)
T ss_pred cccCCcccchhhHHHHHHHHHHHhhhcccccccCCC--CCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHH
Confidence 999999999999999999887776543322 333 489999999999988765544567788999999999999999
Q ss_pred HHhcCCccccCCCCCCCHHHHhhccChhhhhhccCCCCCCCc
Q 006666 349 AMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEF 390 (636)
Q Consensus 349 a~~~SPLiiG~DL~~l~~~~l~lLtN~EvIaInQd~~~~~~~ 390 (636)
||++||||+|+||++|++++++||||+||||||||+++++++
T Consensus 314 am~~SPLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~~~~ 355 (357)
T PLN03231 314 AVAKSPLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGNRNA 355 (357)
T ss_pred HHHhCchhhcCCcccCCHHHHHHhcChHHheecCCccccccC
Confidence 999999999999999999999999999999999999999885
No 6
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-79 Score=633.39 Aligned_cols=370 Identities=30% Similarity=0.482 Sum_probs=308.3
Q ss_pred ccccCCCCCCCCceEecCcccccccCC----------HHHHHHHHHHH-HhccccCCceEEEecccccccccCCccccCC
Q 006666 25 ISEAVPVRASSPPRGWNSYDSFCWTIS----------EEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSL 93 (636)
Q Consensus 25 ~~~~~~~~a~tPPmGWNSW~~~~~~It----------E~~v~~~Ad~m-a~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~ 93 (636)
.-..++||++||||||+||+.|.|+++ |..++++||.| ++|+++.||+||+|||||.+..
T Consensus 22 ~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~--------- 92 (414)
T KOG2366|consen 22 RMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVT--------- 92 (414)
T ss_pred heeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhc---------
Confidence 445677999999999999999999877 99999999987 5799999999999999998764
Q ss_pred CcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhh
Q 006666 94 GFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKD 173 (636)
Q Consensus 94 ~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~D 173 (636)
||..|+++||++|||+ |+++|++|+|++|||||||.+.|..+|+..|++
T Consensus 93 ----Rd~~grLva~~~rFP~-----Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PGS---------------------- 141 (414)
T KOG2366|consen 93 ----RDSDGRLVADPSRFPS-----GIKALADYVHSKGLKLGIYSDAGNFTCAGYPGS---------------------- 141 (414)
T ss_pred ----cCCccccccChhhccc-----chhhhhhchhhcCCceeeeeccCchhhccCCcc----------------------
Confidence 5788999999999998 999999999999999999999998777543332
Q ss_pred cccccccccccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCC-hHHHHHHHHHHHhcCCCeEEEcCC
Q 006666 174 IGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 174 i~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~-~~~~~am~~Al~~~GrpI~lSls~ 252 (636)
+.|++.++++||+|||||+|+|.|+..... ++.|..|++||+++||||+||+|.
T Consensus 142 -------------------------~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms~aLN~tGrpi~ySlC~ 196 (414)
T KOG2366|consen 142 -------------------------LGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPIMSRALNNTGRPIFYSLCS 196 (414)
T ss_pred -------------------------cchhhhhhhhhHhhCCcEEeccccccccccccccchhHHHHHhccCCceEEEecc
Confidence 446677799999999999999999876654 577999999999999999999874
Q ss_pred CC-CCChhh----hhhhccccceEEecCCCcCchHHHHHHHHhhhhhhhhhhhcccCCCCCccCCCCCCCCcccCCCCCC
Q 006666 253 GT-GVTPAM----AKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSN 327 (636)
Q Consensus 253 g~-~~~~~~----a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~ 327 (636)
++ ..+..+ ...++.++|.||+.+||.|+|.++..+++... |-...+...+|| ++|||||||++|+
T Consensus 197 W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~-~nqd~~~~~agP--g~WNDpDmL~iGN------- 266 (414)
T KOG2366|consen 197 WPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYIC-WNQDRIAPLAGP--GGWNDPDMLEIGN------- 266 (414)
T ss_pred CcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHh-hhhhhhccccCC--CCCCChhHhhcCC-------
Confidence 22 221111 23467889999999999999999998877322 221122234554 8999999999994
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCccccCCCCCCCHHHHhhccChhhhhhccCCCCCCCccccccccCCCcccccCC
Q 006666 328 EGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTP 407 (636)
Q Consensus 328 ~g~~~~~~lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~~~l~lLtN~EvIaInQd~~~~~~~~~~~~~~~~~~~~~~~~ 407 (636)
.+||.+|+++||++||++++||++|+|++.++++.+++|+|||+||||||+++ +++.
T Consensus 267 ------~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplg------iqGr----------- 323 (414)
T KOG2366|consen 267 ------GGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLG------IQGR----------- 323 (414)
T ss_pred ------CCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccc------hhhe-----------
Confidence 36999999999999999999999999999999999999999999999999743 3320
Q ss_pred CCCccccccccccccccccCCCCCCccccccccchhhhhhhcCCCCCCCCCceecccccccccCCcchhhhccccceEEE
Q 006666 408 PHLSEVAESNTHVLGLTSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHL 487 (636)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (636)
+|.
T Consensus 324 -------------------------------------~i~---------------------------------------- 326 (414)
T KOG2366|consen 324 -------------------------------------KIV---------------------------------------- 326 (414)
T ss_pred -------------------------------------eee----------------------------------------
Confidence 000
Q ss_pred eecCCccccccCCcccccchhhhhccccccccccccccCCCCCccccCCCcceEEeeeccccCCCCeeEEEEeCCCCcEE
Q 006666 488 LASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIY 567 (636)
Q Consensus 488 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~c~~~~~q~~~~g~l~~~~s~~c~~v~~~~~~~~~~~~~vW~~~~~~g~~~ 567 (636)
- ....+|||++|+++-.++
T Consensus 327 ------------------------------------------------------~-------e~~~ievw~~pls~~~~A 345 (414)
T KOG2366|consen 327 ------------------------------------------------------L-------EGDSIEVWSGPLSGKSVA 345 (414)
T ss_pred ------------------------------------------------------e-------cCCceEEEeeccCCceEE
Confidence 0 012389999999988899
Q ss_pred EEEEeCC--CCCeEEE-EecccccccCCCCCCCCCceeEEeccCC-CccceeccEEEEEEcCcceEEEEEecC
Q 006666 568 VAFFNLN--TEKTLIS-TKISDLAKALPGKNLNGASCKCREVWSA-KDYGVLQQTLSTAVGMHGCALFVLNCD 636 (636)
Q Consensus 568 va~fN~~--~~~~~it-~~l~dl~~~l~g~~~~~~~~~~~dlW~~-~~~g~~~~~~~~~v~~hg~~l~~l~p~ 636 (636)
|||+|+. ..+++|+ +.|..++.- . ...|.++|||++ .+++..+++|++.|.|||++||+|.|.
T Consensus 346 va~lNr~~~~~~~~It~~~l~~~g~~-~-----~~~~~~~dLw~~~~~~~~~~~~i~~~V~phG~~l~~l~~~ 412 (414)
T KOG2366|consen 346 VAFLNRRKTGIPARITAASLRELGLT-N-----PASYTAHDLWSGVLGFLPTKDSISAQVNPHGVVLFVLHPS 412 (414)
T ss_pred EEEecccCCCCCccccHHHHhhcCCC-C-----CceeEeeehhhccccccccCCeEEEEECCCCcEEEEEEec
Confidence 9999988 5568998 889998852 2 258999999999 677788999999999999999999984
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=2.9e-33 Score=303.08 Aligned_cols=284 Identities=21% Similarity=0.401 Sum_probs=182.3
Q ss_pred CCCCCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCC
Q 006666 31 VRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDR 110 (636)
Q Consensus 31 ~~a~tPPmGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~k 110 (636)
...++||||||||+++++++||+.++++|+.+ +++||++|+|||||+... .. ..+..|+|+||++|
T Consensus 36 ~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~----~~~G~e~fviDDGW~~~r-~~---------d~~~~GdW~~~~~k 101 (394)
T PF02065_consen 36 WRDKPPPVGWNSWEAYYFDITEEKILELADAA----AELGYEYFVIDDGWFGGR-DD---------DNAGLGDWEPDPKK 101 (394)
T ss_dssp TTTSS--EEEESHHHHTTG--HHHHHHHHHHH----HHHT-SEEEE-SSSBCTE-ST---------TTSTTSBECBBTTT
T ss_pred cCCCCCceEEEcccccCcCCCHHHHHHHHHHH----HHhCCEEEEEcCcccccc-CC---------CcccCCceeEChhh
Confidence 35678999999999999999999999999976 678999999999999762 11 12467999999999
Q ss_pred CCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCcee
Q 006666 111 WPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMS 190 (636)
Q Consensus 111 FPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~ 190 (636)
||+ ||++|+++||++|||||||+.|.. +.++|++. .+ +|+|..+.-.... ..+ ...++
T Consensus 102 FP~-----Gl~~l~~~i~~~Gmk~GlW~ePe~----v~~~S~l~--------~~-hPdw~l~~~~~~~-~~~---r~~~v 159 (394)
T PF02065_consen 102 FPN-----GLKPLADYIHSLGMKFGLWFEPEM----VSPDSDLY--------RE-HPDWVLRDPGRPP-TLG---RNQYV 159 (394)
T ss_dssp STT-----HHHHHHHHHHHTT-EEEEEEETTE----EESSSCHC--------CS-SBGGBTCCTTSE--ECB---TTBEE
T ss_pred hCC-----cHHHHHHHHHHCCCeEEEEecccc----ccchhHHH--------Hh-CccceeecCCCCC-cCc---ccceE
Confidence 998 999999999999999999999964 56667543 33 3677665322111 111 23578
Q ss_pred ecCCchHHHHHHHHH-HHHHHhhCCCEEEecCCCC--C---C-CC--hHHH----HHHHHHHHhcCCCeEEEcCC--CCC
Q 006666 191 VNTKLGAGRAFLRSL-YQQYAEWGVDFVKHDCVFG--D---D-LD--INEI----SFVSEVLKELDRPIVYSLSP--GTG 255 (636)
Q Consensus 191 lD~t~p~aq~y~~s~-~~~fa~WGVDylK~D~~~~--~---~-~~--~~~~----~am~~Al~~~GrpI~lSls~--g~~ 255 (636)
||+++|++++|+... .+.+++|||||||+|++.. . + .+ ..+| -.|.++|++...+|+++.|. |..
T Consensus 160 LD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssGG~R 239 (394)
T PF02065_consen 160 LDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSGGGR 239 (394)
T ss_dssp B-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTTBTT
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCCCCc
Confidence 999999999998554 4678999999999999742 1 1 11 1222 24777788888899999996 333
Q ss_pred CChhhhhhhccccceEEecCCCcCchHHHHHHHHhhhhhhhhhhhcccCCCCCccCCCCCCCCcccCCCCCCCCCCCCCC
Q 006666 256 VTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCN 335 (636)
Q Consensus 256 ~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~~~ 335 (636)
.++.+. .|.++--+| |..+.+.++..+......+.. ...+ .|.-+.. +|...+
T Consensus 240 ~D~g~l----~~~~~~w~S-D~tda~~R~~iq~g~s~~~p~-~~~~------~hv~~~p---------------~~~~~r 292 (394)
T PF02065_consen 240 FDPGML----YYTPQSWTS-DNTDALERLRIQYGTSLFYPP-EYMG------AHVSASP---------------NHQTGR 292 (394)
T ss_dssp TSHHHH----CCSSEEESB-ST-SHHHHHHHHHHHCTTSSG-GGEE------EEEEHSS----------------TTTHH
T ss_pred cccchh----eeccccccC-CccchHHHhhhhcccccccCH-HHhC------CeEEecc---------------ccccCC
Confidence 444443 345555565 555665666554433222221 1111 1211110 111224
Q ss_pred CCHHHHHHHHHHHHHhcCCccccCCCCCCCHHHHhhccChhhhhhccC
Q 006666 336 LNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTF 383 (636)
Q Consensus 336 lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~~~l~lLtN~EvIaInQd 383 (636)
.|+-+.|+++++| +.|.++.||++++++.++.++ +.||+-+.
T Consensus 293 ~~~l~~r~~~a~~----g~~g~e~dl~~ls~~e~~~~~--~~ia~YK~ 334 (394)
T PF02065_consen 293 TTPLEFRAHVAMF----GRLGLELDLTKLSEEELAAVK--EQIAFYKS 334 (394)
T ss_dssp HGGHHHHHHHHTC----SEEEEESTGCGS-HHHHHHHH--HHHHHHHH
T ss_pred cccceechhhhhc----CCceeccCcccCCHHHHHHHH--HHHHHHHh
Confidence 5667777776554 788899999999999888764 45555443
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=5e-21 Score=207.73 Aligned_cols=169 Identities=20% Similarity=0.426 Sum_probs=131.9
Q ss_pred CCCCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCC
Q 006666 32 RASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRW 111 (636)
Q Consensus 32 ~a~tPPmGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kF 111 (636)
+...-|||||||++|+.+.|+++++++++. +|+.|.+.|+|||||+... +. ..-.-|+|..+.+||
T Consensus 288 ~~kprPi~~nsWea~Yfd~t~e~ile~vk~----akk~gvE~FvlDDGwfg~r-nd---------d~~slGDWlv~seKf 353 (687)
T COG3345 288 VKKPRPIGWNSWEAYYFDFTEEEILENVKE----AKKFGVELFVLDDGWFGGR-ND---------DLKSLGDWLVNSEKF 353 (687)
T ss_pred cCCCCcceeeceeeeeecCCHHHHHHHHHH----HhhcCeEEEEEcccccccc-Cc---------chhhhhceecchhhc
Confidence 344569999999999999999999999985 4789999999999999652 11 122469999999999
Q ss_pred CCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhccccccccc------ccC
Q 006666 112 PSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACA------WMQ 185 (636)
Q Consensus 112 Ps~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~------~~~ 185 (636)
|+ |+..|+..||+.||+||||+.|++ +...|. .|++ +|+|..+ +...+...+ |..
T Consensus 354 Ps-----giE~li~~I~e~Gl~fGIWlePem----vs~dSd--------lfrq-HPDWvvk-~~G~p~~~~Rnqyvl~~s 414 (687)
T COG3345 354 PS-----GIEELIEAIAENGLIFGIWLEPEM----VSEDSD--------LFRQ-HPDWVVK-VNGYPLMAGRNQYVLWLS 414 (687)
T ss_pred cc-----cHHHHHHHHHHcCCccceeecchh----cccchH--------HHhh-CCCeEEe-cCCccccccccchhhhcc
Confidence 98 999999999999999999999976 444453 4554 4889887 333332222 333
Q ss_pred CCceeecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHHH
Q 006666 186 HGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEIS 233 (636)
Q Consensus 186 ~~~~~lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~~~~~~~~~~~~ 233 (636)
+..+++|..++.+|.++..+++.++ +||+.++|+|+.+......++|.
T Consensus 415 ~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~qqry~ 463 (687)
T COG3345 415 NPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALPQQRYQ 463 (687)
T ss_pred ChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCccccchHHH
Confidence 4456778888888888888999998 99999999999876555555543
No 9
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.82 E-value=5.4e-18 Score=192.16 Aligned_cols=299 Identities=15% Similarity=0.136 Sum_probs=179.5
Q ss_pred CCCc-----eEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEeccccccccc--CCccccCC-CcccccCCCCcc
Q 006666 34 SSPP-----RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKV--KGAYVDSL-GFDVIDEWGRMI 105 (636)
Q Consensus 34 ~tPP-----mGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~--~g~~~~~~-~~~~~D~~G~l~ 105 (636)
++.| .||||||+|+.+|||+.|++..+.|+++-.+ -++++||||||.... .+...... +.......-++.
T Consensus 196 K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p--~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~ 273 (758)
T PLN02355 196 KKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVT--PKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIK 273 (758)
T ss_pred ccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCC--ccEEEEeccccccccccccccccccccchhhhhhcccc
Confidence 3677 9999999999999999999999998775444 379999999998521 11000000 000001123455
Q ss_pred cCCCCCCCC-C-------CCCChHHHHHHHHH-cCCE-EEEEeecCccccccCCCCccccccc-CCcccccCcccch--h
Q 006666 106 PDPDRWPSS-R-------GGKGFTEVAKKVHA-MGLK-FGIHVMRGISTQAFNADTPILDTLK-GGAYEDSGRQWRA--K 172 (636)
Q Consensus 106 pd~~kFPs~-~-------~~~Gmk~Lad~iHs-kGLK-fGIy~~pGi~~~av~~~spi~gt~~-g~~y~~~g~~~~~--~ 172 (636)
+|+ |||.- . ...|||.+++.|++ .|+| +|+|.+-.-.+-.+.++.+..-... ...|..+-|+... .
T Consensus 274 ~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~~ 352 (758)
T PLN02355 274 ENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNEP 352 (758)
T ss_pred ccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccCc
Confidence 664 88831 0 01499999999986 7898 6999876545555555554221100 0111111111110 0
Q ss_pred hcccccccccccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCC-----CCC-ChHH-HHHHHHHHHh----
Q 006666 173 DIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-DINE-ISFVSEVLKE---- 241 (636)
Q Consensus 173 Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~-----~~~-~~~~-~~am~~Al~~---- 241 (636)
|++... -.+++.+.+|+ ..+..||+.+...+++-|||+||+|...- ... ...+ .++.++||++
T Consensus 353 ~~a~d~----i~~~G~glv~P--e~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r 426 (758)
T PLN02355 353 CDALES----ITTNGLGLVNP--EKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIAR 426 (758)
T ss_pred chhhhh----cccCceeccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 110000 01233344543 34789999999999999999999996421 111 1112 2345555543
Q ss_pred c--CCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHH--HHHhhh-hhhhhhhhcccCCCCCccCCCCCC
Q 006666 242 L--DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVSR-DFSAANMIGAKGLQGKSWPDLDML 316 (636)
Q Consensus 242 ~--GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~--~~~~~~-~w~~~~~~~~~g~~~g~wnDpDmL 316 (636)
. ++-++-++|..+... +. .+...+.|.|+|.++.+..... ++..++ ... .+ ...|||-||+
T Consensus 427 ~F~~ngvI~CMs~~~d~i--~~---~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLl----lg-----~~v~PDWDMF 492 (758)
T PLN02355 427 NFPDNGIISCMSHNTDGL--YS---AKRTAVIRASDDFWPRDPASHTIHIASVAYNTIF----LG-----EFMQPDWDMF 492 (758)
T ss_pred hCCCCceEEecccCchhh--cc---cccceeeeeccccccCCCccCchhhhhhhhhhhh----hc-----cccccCcccc
Confidence 2 667888887533211 11 2456899999999987764321 222211 111 12 1369999999
Q ss_pred CCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccCCCCCCCHHHHhhcc
Q 006666 317 PLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLIT 373 (636)
Q Consensus 317 ~vG~~~~~~~~~g~~~~~~lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~~~l~lLt 373 (636)
.--+ .-.+.|.+.-|+.|+|++++|-+-+-+-+.|.=|.
T Consensus 493 ~S~h------------------p~A~~HAaaRAisGGPIYvSD~PG~hdf~LLk~Lv 531 (758)
T PLN02355 493 HSLH------------------PMAEYHAAARAVGGCAIYVSDKPGQHDFNLLKKLV 531 (758)
T ss_pred eecC------------------ccHHHHHHHHhccCCcEEEecCCCCccHHHHHhhh
Confidence 7432 23578999999999999999999888766666553
No 10
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.81 E-value=1.4e-17 Score=188.39 Aligned_cols=295 Identities=15% Similarity=0.119 Sum_probs=177.9
Q ss_pred eEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCcc-cc-CCCcccccCCCCcccCCCCCCCCC
Q 006666 38 RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAY-VD-SLGFDVIDEWGRMIPDPDRWPSSR 115 (636)
Q Consensus 38 mGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~-~~-~~~~~~~D~~G~l~pd~~kFPs~~ 115 (636)
.|||||++|+.+|||+.|++..+.|+++-.+ -++++||||||.-...+.. .+ ..+.-.....-++.++ .|||...
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p--~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~ 280 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTP--PKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKD 280 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCC--ceEEEEecccccccccccccccccccchhhhhhccCccc-ccccccc
Confidence 7999999999999999999999998775444 3799999999985421110 00 0000000011224455 7888422
Q ss_pred C-CCChHHHHHHHH-HcCCE-EEEEeecCccccccCCCCccccccc-CCcccccCccc--chhhcccccccccccCCCce
Q 006666 116 G-GKGFTEVAKKVH-AMGLK-FGIHVMRGISTQAFNADTPILDTLK-GGAYEDSGRQW--RAKDIGLKERACAWMQHGFM 189 (636)
Q Consensus 116 ~-~~Gmk~Lad~iH-skGLK-fGIy~~pGi~~~av~~~spi~gt~~-g~~y~~~g~~~--~~~Di~~~~~~c~~~~~~~~ 189 (636)
. ..|||.+++.|+ ..|+| .|+|.+-.-.+-.+.++.+..-... --.|...-+.. +..|++.... ..++.+
T Consensus 281 ~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l----~~~g~g 356 (750)
T PLN02684 281 DPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVM----TLQGLG 356 (750)
T ss_pred CCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCcccccccc----ccCccc
Confidence 1 149999999997 67998 6999876555555666655432110 00111100111 1111110000 012333
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCC-----CCC-Ch-HHHHHHHHHHHhc------CCCeEEEcCCCCCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-DI-NEISFVSEVLKEL------DRPIVYSLSPGTGV 256 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~-----~~~-~~-~~~~am~~Al~~~------GrpI~lSls~g~~~ 256 (636)
.+|+ ..+..||+.+...+++-|||+||+|...- ..+ .. +-.++.++||+++ ++-++-++|..+..
T Consensus 357 lv~P--~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~~d~ 434 (750)
T PLN02684 357 LVNP--KKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDA 434 (750)
T ss_pred ccCH--HHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCchh
Confidence 4555 35789999999999999999999996431 111 11 2234555666543 44578788754321
Q ss_pred ChhhhhhhccccceEEecCCCcCchHHHH--HHHHhhh-hhhhhhhhcccCCCCCccCCCCCCCCcccCCCCCCCCCCCC
Q 006666 257 TPAMAKEVSGLVNMYRITGDDWDTWGDVA--AHFNVSR-DFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRT 333 (636)
Q Consensus 257 ~~~~a~~~~~~an~wRis~Di~d~W~~i~--~~~~~~~-~w~~~~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~ 333 (636)
-+. .+...+.|.|+|.++.+.... +++..++ ... .+ .-.|||-||+.--+
T Consensus 435 --i~~---sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLl----lg-----~~v~PDWDMFqS~h------------- 487 (750)
T PLN02684 435 --LYC---SKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVF----LG-----EFMQPDWDMFHSLH------------- 487 (750)
T ss_pred --hhc---ccccceeeeccccccCCCccchhhhhhhhhhhhh----hc-----cccccCcccceecC-------------
Confidence 121 245689999999998765432 1222211 111 11 13589999996442
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccccCCCCCCCHHHHhhcc
Q 006666 334 CNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLIT 373 (636)
Q Consensus 334 ~~lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~~~l~lLt 373 (636)
.-.+.|.+.-|+.|+|++++|.+-+-+-+.|.=|.
T Consensus 488 -----p~A~~HAaaRAisGGPIYvSD~PG~Hdf~LLk~Lv 522 (750)
T PLN02684 488 -----PAAEYHASARAISGGPLYVSDAPGKHNFELLKKLV 522 (750)
T ss_pred -----ccHHHHHHHHhhcCCceEEecCCCCccHHHHHhhh
Confidence 23488999999999999999988888766666553
No 11
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.80 E-value=2.8e-17 Score=186.03 Aligned_cols=297 Identities=15% Similarity=0.126 Sum_probs=179.6
Q ss_pred CCCCCc-----eEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCcc-cc-CC-CcccccCCCC
Q 006666 32 RASSPP-----RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAY-VD-SL-GFDVIDEWGR 103 (636)
Q Consensus 32 ~a~tPP-----mGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~-~~-~~-~~~~~D~~G~ 103 (636)
.-++.| .||||||+|+.+|||+.|++..+.|+++-.+ -++++||||||.-...+.. .+ .. |....-..-+
T Consensus 190 e~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip--~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 190 EKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTP--PKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred ccccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCC--ceEEEEccCccccccccccccccccccchhhhhhcc
Confidence 345778 9999999999999999999999998775443 3799999999985321110 00 00 0000001223
Q ss_pred cccCCC--------CCCCCCCCCChHHHHHHHHH-cCCE-EEEEeecCccccccCCCCccccccc-CCcccccCcccch-
Q 006666 104 MIPDPD--------RWPSSRGGKGFTEVAKKVHA-MGLK-FGIHVMRGISTQAFNADTPILDTLK-GGAYEDSGRQWRA- 171 (636)
Q Consensus 104 l~pd~~--------kFPs~~~~~Gmk~Lad~iHs-kGLK-fGIy~~pGi~~~av~~~spi~gt~~-g~~y~~~g~~~~~- 171 (636)
+.++++ .||. |||.+++.|++ .|+| .|+|.+-.-.+-.+.|+.+..-... -..|...-|+-..
T Consensus 268 f~en~KF~~~~~~~~fp~-----Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~ 342 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVS-----GLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGN 342 (775)
T ss_pred ccccccccccccccCCCC-----cHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCcccc
Confidence 444432 4786 99999999985 7998 6999876545555555543321100 0111110000000
Q ss_pred -hhcccccccccccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCC-----CCC-C-hHHHHHHHHHHHhc-
Q 006666 172 -KDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-D-INEISFVSEVLKEL- 242 (636)
Q Consensus 172 -~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~-----~~~-~-~~~~~am~~Al~~~- 242 (636)
.|++.. .-..++.+.+|+ ..+..||+.+...+++-|||+||+|...- ..+ . .+-.++.++||+++
T Consensus 343 ~pd~a~d----~l~~~G~glV~P--~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~ 416 (775)
T PLN02219 343 QPDIVMD----SLSVHGLGLVNP--KKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASI 416 (775)
T ss_pred Ccchhhh----hhhhCCccccCH--HHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHH
Confidence 000000 001123345665 46789999999999999999999996431 111 1 12224455555443
Q ss_pred -----CCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHH--HHHhh-hhhhhhhhhcccCCCCCccCCCC
Q 006666 243 -----DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVS-RDFSAANMIGAKGLQGKSWPDLD 314 (636)
Q Consensus 243 -----GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~--~~~~~-~~w~~~~~~~~~g~~~g~wnDpD 314 (636)
++-++-++|..+.. .. . .+...+.|.|+|.++.+..... ++..+ .... .+ .-.|||-|
T Consensus 417 ~r~F~~ng~I~CMsh~~d~---i~-~-~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLl----lg-----~~v~PDWD 482 (775)
T PLN02219 417 ARNFTDNGCISCMCHNTDG---LY-S-AKQTAVVRASDDFYPRDPASHTIHISSVAYNTLF----LG-----EFMQPDWD 482 (775)
T ss_pred HHhCCCCCeEEecccCchh---hh-c-ccccceeecccccccCCCccCcchhhhhhhhhHH----hc-----cccccCch
Confidence 56688888854321 11 1 3566899999999987754321 22111 1111 12 13589999
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccCCCCCCCHHHHhhcc
Q 006666 315 MLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLIT 373 (636)
Q Consensus 315 mL~vG~~~~~~~~~g~~~~~~lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~~~l~lLt 373 (636)
|+.--+ .-.+.|.+.-|+.|+|++++|-+-+-+-+.|.=|.
T Consensus 483 MFqS~H------------------p~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~Lv 523 (775)
T PLN02219 483 MFHSLH------------------PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLV 523 (775)
T ss_pred hceecC------------------ccHHHHHHHHhhcCCcEEEecCCCCccHHHHHHhh
Confidence 996432 23388999999999999999999888776666553
No 12
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.76 E-value=5.7e-17 Score=171.22 Aligned_cols=206 Identities=16% Similarity=0.248 Sum_probs=141.1
Q ss_pred CCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCC
Q 006666 34 SSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPS 113 (636)
Q Consensus 34 ~tPPmGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs 113 (636)
.++|+ ||||+++...+||++|++.|+.+.+. ...++.|+||++|+. .+|.++.|++|||+
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~--~iP~d~i~iD~~w~~-----------------~~g~f~~d~~~FPd 71 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDN--GFPNGQIEIDDNWET-----------------CYGDFDFDPTKFPD 71 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHc--CCCCCeEEeCCCccc-----------------cCCccccChhhCCC
Confidence 68888 99999999999999999999987542 235789999999974 35889999999996
Q ss_pred CCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccc-cCcccchhhccc-ccccccccCCCceee
Q 006666 114 SRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGL-KERACAWMQHGFMSV 191 (636)
Q Consensus 114 ~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~-~g~~~~~~Di~~-~~~~c~~~~~~~~~l 191 (636)
++.++++||++|+|++||+.|++.. +++. |.+ ...++.+++... ....-.|.++..+.+
T Consensus 72 ------p~~mi~~l~~~G~k~~l~i~P~i~~-----~s~~--------~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~ 132 (303)
T cd06592 72 ------PKGMIDQLHDLGFRVTLWVHPFINT-----DSEN--------FREAVEKGYLVSEPSGDIPALTRWWNGTAAVL 132 (303)
T ss_pred ------HHHHHHHHHHCCCeEEEEECCeeCC-----CCHH--------HHhhhhCCeEEECCCCCCCcccceecCCcceE
Confidence 9999999999999999999998742 2221 221 011233333221 011111223334579
Q ss_pred cCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCC-----------CChHHH-HHHHHHHHhcCCCeEEEcCCCCCCCh
Q 006666 192 NTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDD-----------LDINEI-SFVSEVLKELDRPIVYSLSPGTGVTP 258 (636)
Q Consensus 192 D~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~~~~~-----------~~~~~~-~am~~Al~~~GrpI~lSls~g~~~~~ 258 (636)
|.++|+|++|+.+.++.+. ++|||++|+|+..... ..+..| ..+.++..+.+ |++++=|.
T Consensus 133 Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg------ 205 (303)
T cd06592 133 DFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAG------ 205 (303)
T ss_pred eCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEee------
Confidence 9999999999988887665 9999999999864311 112334 35666666654 77766442
Q ss_pred hhhhhhccccceEEecCCCcCchHHH---HHHHH
Q 006666 259 AMAKEVSGLVNMYRITGDDWDTWGDV---AAHFN 289 (636)
Q Consensus 259 ~~a~~~~~~an~wRis~Di~d~W~~i---~~~~~ 289 (636)
++ ..+.++-.| ++|...+|+.+ ..++.
T Consensus 206 -~~-g~~~~~~~w--~GD~~s~W~~~~gl~~~i~ 235 (303)
T cd06592 206 -WR-SQGLPLFVR--MMDKDSSWGGDNGLKSLIP 235 (303)
T ss_pred -ee-cCCCCeeEE--cCCCCCCCCCCcCHHHHHH
Confidence 11 112233444 68988899876 55543
No 13
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.70 E-value=5.8e-15 Score=167.50 Aligned_cols=289 Identities=14% Similarity=0.173 Sum_probs=167.6
Q ss_pred eEecCcccccccCCHHHHHHHHHHHHh-ccccCCceEEEecccccccccCCccc-cCCCccccc--------CCCCcccC
Q 006666 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAYV-DSLGFDVID--------EWGRMIPD 107 (636)
Q Consensus 38 mGWNSW~~~~~~ItE~~v~~~Ad~ma~-gL~~~GY~yi~IDdGW~~~~~~g~~~-~~~~~~~~D--------~~G~l~pd 107 (636)
.|||||++|+.+|||+.|++-.+-+++ +... .+++||||||.-...++.. +..+. .+. ..-++.+|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip~---~~vIIDDGWQsi~~d~~~~~~~~~~-~~~~~g~q~~~rL~~f~en 290 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCPP---GLVLIDDGWQSICHDEDPISDQEGM-NRTVAGEQMPCRLLKFEEN 290 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCCc---cEEEEcCCcccccccCccccccccc-ccccccchhhhhhcccccc
Confidence 799999999999999999999997754 4554 5999999999742211100 00000 000 01123344
Q ss_pred ---------CCCCCCCCCCCChHHHHHHHHHc--CCE-EEEEeecCccccccCCCCcccccccCCcccccCcc--cchhh
Q 006666 108 ---------PDRWPSSRGGKGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQ--WRAKD 173 (636)
Q Consensus 108 ---------~~kFPs~~~~~Gmk~Lad~iHsk--GLK-fGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~--~~~~D 173 (636)
+..||. |||.+++.|+.+ |+| +|+|.+-.-.+-.+.++.+.+-.. ...|...-|+ -+..|
T Consensus 291 ~KF~~~~~~~~~~p~-----Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~-~~~~p~~spg~~~~~~d 364 (777)
T PLN02711 291 YKFRDYVSPKSLSNK-----GMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPES-KVVAPKLSPGLKMTMED 364 (777)
T ss_pred ccccccccccCCCCC-----cHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccc-eeeccccCccccccccc
Confidence 334565 999999999994 788 699987644455555555332110 0011110001 01122
Q ss_pred cccccccccccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC-----CCCC-ChHH-HHHHHHHH----Hh-
Q 006666 174 IGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-DINE-ISFVSEVL----KE- 241 (636)
Q Consensus 174 i~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~-----~~~~-~~~~-~~am~~Al----~~- 241 (636)
++.-.. -.++.+.+|+ ..+..||+.+...+++-|||+||+|... ...+ ...+ .+++++|| .+
T Consensus 365 ~~~d~~----~~~g~glv~P--e~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~ 438 (777)
T PLN02711 365 LAVDKI----VNNGVGLVPP--ELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKH 438 (777)
T ss_pred cccccc----ccCcccccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 211000 0123344555 3478999999999999999999999532 1112 1212 23444444 44
Q ss_pred -cCCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCc----------hHHHHHHHHhhhhhhhhhhhcccCCCCCcc
Q 006666 242 -LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDT----------WGDVAAHFNVSRDFSAANMIGAKGLQGKSW 310 (636)
Q Consensus 242 -~GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~----------W~~i~~~~~~~~~w~~~~~~~~~g~~~g~w 310 (636)
.++-++-++|..... .-+. .+...+-|.|+|.+++ |-.-.+++..+++ +. +.+ .-.|
T Consensus 439 F~~ng~I~CMs~~~d~-~~~~---tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyN-SL--llg-----~~v~ 506 (777)
T PLN02711 439 FNGNGVIASMEHCNDF-MFLG---TEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYN-SL--WMG-----NFIH 506 (777)
T ss_pred CCCCCeEeecccCchh-hhcc---CcccceeeecccccCCCCccccccccccccceeeeehhh-hh--hhc-----cccc
Confidence 355688888753210 0001 2345789999998843 4111111111111 00 111 1358
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccCCCCCCCHHHHhhc
Q 006666 311 PDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (636)
Q Consensus 311 nDpDmL~vG~~~~~~~~~g~~~~~~lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~~~l~lL 372 (636)
||-||+.-- ..-.+.|.+.-|+.|+|++++|-+-+-+-+.|.=|
T Consensus 507 PDWDMF~S~------------------Hp~A~~HAaaRAisGGPIYVSD~pG~Hdf~LLk~L 550 (777)
T PLN02711 507 PDWDMFQST------------------HPCAEFHAASRAISGGPIYVSDSVGKHNFPLLKRL 550 (777)
T ss_pred CCchhhhcc------------------CchHHHHHHHHhhcCCCEEEecCCCCccHHHHHhh
Confidence 999999643 23558899999999999999998887776655555
No 14
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.70 E-value=4.8e-16 Score=177.47 Aligned_cols=301 Identities=17% Similarity=0.230 Sum_probs=176.2
Q ss_pred eEecCcccccccCCHHHHHHHHHHHHh-ccccCCceEEEecccccccccCCcccc-C------CC--cc----cccCCCC
Q 006666 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAYVD-S------LG--FD----VIDEWGR 103 (636)
Q Consensus 38 mGWNSW~~~~~~ItE~~v~~~Ad~ma~-gL~~~GY~yi~IDdGW~~~~~~g~~~~-~------~~--~~----~~D~~G~ 103 (636)
.|||||++|+.++||+.|++-.+.+++ ++.. .+++||||||.-...++... . .| +. .++++.+
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~~---~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIPP---RFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCCc---eEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 699999999999999999999997754 4543 59999999998543332100 0 00 00 0111222
Q ss_pred cccC-----CCCCCCCCCCCChHHHHHHHHHc--CCE-EEEEeecCccccccCCCCccc-ccccCCcccccCcc--cchh
Q 006666 104 MIPD-----PDRWPSSRGGKGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPIL-DTLKGGAYEDSGRQ--WRAK 172 (636)
Q Consensus 104 l~pd-----~~kFPs~~~~~Gmk~Lad~iHsk--GLK-fGIy~~pGi~~~av~~~spi~-gt~~g~~y~~~g~~--~~~~ 172 (636)
+..+ +++||. ||+.+++.|+++ |+| +|+|.+-.=.+-.+.|+.+.. ... ..|...-|. -...
T Consensus 274 F~~~~~~~~~~~~~~-----GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k--~~~~~~spg~~~~~~ 346 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPS-----GLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYK--LVYPKLSPGLQGNMP 346 (747)
T ss_pred hhhccCCCcccCCcc-----cHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccc--eeecccCCcccccCc
Confidence 2221 235787 999999999998 898 799976433333444433221 000 000000000 0011
Q ss_pred hcccccccccccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCC-----CCC-ChHH-HHHHHHHHH----h
Q 006666 173 DIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-DINE-ISFVSEVLK----E 241 (636)
Q Consensus 173 Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~-----~~~-~~~~-~~am~~Al~----~ 241 (636)
|++... -..++.+.+|+. .++.||+.++..+++-|||+||+|.... ..+ ...+ .+++++||+ +
T Consensus 347 d~~~d~----~~~~g~glv~p~--~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r 420 (747)
T PF05691_consen 347 DLAVDS----IVKGGLGLVDPE--DAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVAR 420 (747)
T ss_pred cccccc----cccCcccccCHH--HHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHH
Confidence 111000 001233344443 4789999999999999999999997431 111 1222 233444443 3
Q ss_pred c--CCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHH----------HHHHHhh-hhhhhhhhhcccCCCCC
Q 006666 242 L--DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDV----------AAHFNVS-RDFSAANMIGAKGLQGK 308 (636)
Q Consensus 242 ~--GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i----------~~~~~~~-~~w~~~~~~~~~g~~~g 308 (636)
. |+.++-++|..+... +.. .+.....|+|+|.++.+..- .+++..+ .... .+ .-
T Consensus 421 ~F~~~~vI~CMsh~~~~l--~~~--~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyNsL~----~g-----~~ 487 (747)
T PF05691_consen 421 HFSGNGVINCMSHNPDNL--YHS--TKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYNSLL----LG-----QF 487 (747)
T ss_pred hCCCCCeEEecCCCccch--hcc--cccccceeccccccCCCCCCCccccchhhHHHHHHHHHHHHH----HH-----hh
Confidence 2 567888888533211 110 23457899999998765422 2222221 1111 11 13
Q ss_pred ccCCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccCCCCCCCHHHHhh--ccChhhhhhccCCC
Q 006666 309 SWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSL--ITNPTVLEINTFSS 385 (636)
Q Consensus 309 ~wnDpDmL~vG~~~~~~~~~g~~~~~~lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~~~l~l--LtN~EvIaInQd~~ 385 (636)
.|||-||+.--+ .-.+.|.++-||+|+|++|+|.+.+.+-+.|.= |.+..||.....+.
T Consensus 488 ~~PDwDMF~S~h------------------~~A~~HAaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~pg~ 548 (747)
T PF05691_consen 488 VWPDWDMFQSSH------------------PAAEFHAAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHPGR 548 (747)
T ss_pred cCCCcccccccC------------------ccHHHHHHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccCCC
Confidence 689999996431 235789999999999999999998877665543 45666777666653
No 15
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.59 E-value=3.3e-14 Score=150.36 Aligned_cols=197 Identities=19% Similarity=0.243 Sum_probs=135.0
Q ss_pred cCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHH
Q 006666 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (636)
Q Consensus 49 ~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iH 128 (636)
..+++++++.++.+++. ..-++.|.||++|+.. ...|.+..|++|||+ ++.+++.||
T Consensus 20 y~~~~~v~~~~~~~~~~--~iP~d~~~lD~~w~~~---------------~~~~~f~~d~~~FPd------~~~~i~~l~ 76 (308)
T cd06593 20 YYDEEEVNEFADGMRER--NLPCDVIHLDCFWMKE---------------FQWCDFEFDPDRFPD------PEGMLSRLK 76 (308)
T ss_pred CCCHHHHHHHHHHHHHc--CCCeeEEEEecccccC---------------CcceeeEECcccCCC------HHHHHHHHH
Confidence 37899999999876441 2237899999999843 124689999999997 999999999
Q ss_pred HcCCEEEEEeecCccccccCCCCcccccccCCccccc-CcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHH
Q 006666 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (636)
Q Consensus 129 skGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~ 207 (636)
++|+|++||+.|++. .++++ |.+. ..++.+++.........+.++..+.+|.++|++++|+.+.++
T Consensus 77 ~~G~~~~~~~~P~i~-----~~~~~--------~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 143 (308)
T cd06593 77 EKGFKVCLWINPYIA-----QKSPL--------FKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLK 143 (308)
T ss_pred HCCCeEEEEecCCCC-----CCchh--------HHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHH
Confidence 999999999999873 22332 2211 123444443322222223344446799999999999999999
Q ss_pred HHHhhCCCEEEecCCCCCCC--------Ch----HH-----HHHHHHHHHhc---CCCeEEEcCCCCCCChhhhhhhccc
Q 006666 208 QYAEWGVDFVKHDCVFGDDL--------DI----NE-----ISFVSEVLKEL---DRPIVYSLSPGTGVTPAMAKEVSGL 267 (636)
Q Consensus 208 ~fa~WGVDylK~D~~~~~~~--------~~----~~-----~~am~~Al~~~---GrpI~lSls~g~~~~~~~a~~~~~~ 267 (636)
.+.++|||++|+|++..-+. .. .. .+++.+++++. .||++++=+-.. ..+.|
T Consensus 144 ~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~--------Gsqry 215 (308)
T cd06593 144 PLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWA--------GSQKY 215 (308)
T ss_pred HHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcc--------ccccC
Confidence 99999999999998642111 11 11 14566666554 368888865311 11345
Q ss_pred cceEEecCCCcCchHHHHHHHHhh
Q 006666 268 VNMYRITGDDWDTWGDVAAHFNVS 291 (636)
Q Consensus 268 an~wRis~Di~d~W~~i~~~~~~~ 291 (636)
+-.| ++|...+|+.+..++...
T Consensus 216 ~~~w--~GD~~s~w~~L~~~i~~~ 237 (308)
T cd06593 216 PVHW--GGDCESTFEGMAESLRGG 237 (308)
T ss_pred CCEE--CCCcccCHHHHHHHHHHH
Confidence 5667 899999999888776543
No 16
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.41 E-value=5.8e-12 Score=143.24 Aligned_cols=306 Identities=16% Similarity=0.223 Sum_probs=169.5
Q ss_pred eEecCcccccccCCHHHHHHHHHHHHh-ccccCCceEEEecccccccccCCcc-----cc-----------CCCccc---
Q 006666 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAY-----VD-----------SLGFDV--- 97 (636)
Q Consensus 38 mGWNSW~~~~~~ItE~~v~~~Ad~ma~-gL~~~GY~yi~IDdGW~~~~~~g~~-----~~-----------~~~~~~--- 97 (636)
.|||+|++|+.+|+++.|.+-.+-+++ |..+ .+++||||||.-...... .+ ..++..
T Consensus 224 FGWCTWDAFY~~V~p~GV~~Gv~~l~~gG~pp---rfvIIDDGWQsi~~d~~~~~~~~~~~~~~g~q~~~RL~~~~En~K 300 (865)
T PLN02982 224 FGWCTWDAFYLTVDPVGVWHGVKEFAEGGVPP---RFLIIDDGWQSINFDGDNPNEDAKNLVLGGTQMTARLYRFDECEK 300 (865)
T ss_pred ceEEeechhhcccCHHHHHHHHHHHhcCCCCc---cEEEEecchhhccccccCCchhhhhccccccchhhhhhcchhhhh
Confidence 599999999999999999999987655 4544 699999999964311000 00 000000
Q ss_pred -cc-CCC-CcccCCCCCCCC------------------------------------------------------------
Q 006666 98 -ID-EWG-RMIPDPDRWPSS------------------------------------------------------------ 114 (636)
Q Consensus 98 -~D-~~G-~l~pd~~kFPs~------------------------------------------------------------ 114 (636)
++ +.| .+.|++.+|+--
T Consensus 301 Frky~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 380 (865)
T PLN02982 301 FRNYKGGSMLGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAMFDGEEKSVSSESE 380 (865)
T ss_pred hhccccccccCCCcccccccccchhhhcccchhhhhhcccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence 00 011 123444444321
Q ss_pred ------CCCCChHHHHHHHHHc--CCE-EEEEeecCccccccCCCCcccccccCCcccccCcc--cchhhcccccccccc
Q 006666 115 ------RGGKGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQ--WRAKDIGLKERACAW 183 (636)
Q Consensus 115 ------~~~~Gmk~Lad~iHsk--GLK-fGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~--~~~~Di~~~~~~c~~ 183 (636)
....|||.+++.|+.+ |+| .++|.+-.=.+-.+.|+.+-+.+. ..|...-|+ -+..|++.-. -
T Consensus 381 ~~~~~~~~~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k--~~~p~~spg~~~~~~d~a~d~----i 454 (865)
T PLN02982 381 SSGSCKVSGSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAK--VVPARLSPGLDGTMNDLAVDK----I 454 (865)
T ss_pred cccccccCcccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcce--EEecccCccccccCcchhhhh----e
Confidence 0124999999999885 576 688876543344444443211110 011110000 1111221100 0
Q ss_pred cCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC-----CCCC-Ch-HHHHHHHHH----HHhc--CCCeEEEc
Q 006666 184 MQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-DI-NEISFVSEV----LKEL--DRPIVYSL 250 (636)
Q Consensus 184 ~~~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~-----~~~~-~~-~~~~am~~A----l~~~--GrpI~lSl 250 (636)
..++.+.+|+.. +..||+.+...+++-|||+||+|... +..+ .. +-.+++.+| +.+. ++-++-++
T Consensus 455 ~~~G~glv~P~~--~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM 532 (865)
T PLN02982 455 VEGGIGLVHPSQ--AGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASM 532 (865)
T ss_pred ecCceeccCHHH--HHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Confidence 113445566533 68999999999999999999999643 1111 11 112344444 4332 45577777
Q ss_pred CCCCCCChhhhhhhccccceEEecCCCcCc------hHHH----HHHHHhhhhhhhhhhhcccCCCCCccCCCCCCCCcc
Q 006666 251 SPGTGVTPAMAKEVSGLVNMYRITGDDWDT------WGDV----AAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGW 320 (636)
Q Consensus 251 s~g~~~~~~~a~~~~~~an~wRis~Di~d~------W~~i----~~~~~~~~~w~~~~~~~~~g~~~g~wnDpDmL~vG~ 320 (636)
|..+.. .+- -.+..-+-|+|+|.++. |... .+++..+++ +. +.+ .-.|||-||+.--
T Consensus 533 ~~~~~~--~~~--~tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyN-SL--l~G-----~~v~PDWDMFqS~- 599 (865)
T PLN02982 533 QQCNDF--FFL--GTKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYN-SM--WMG-----QIIQPDWDMFQSD- 599 (865)
T ss_pred ccCchh--hhc--cCCcceeeeccccccCCCCCcCccccccccceeeeehhhh-hH--hhc-----cccccCchhcccc-
Confidence 753221 110 01344678999999853 4211 111221111 10 111 1368999999643
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccCCCCCCCHHHHhhc--cChhhhhhccCC
Q 006666 321 LTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI--TNPTVLEINTFS 384 (636)
Q Consensus 321 ~~~~~~~~g~~~~~~lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~~~l~lL--tN~EvIaInQd~ 384 (636)
..-.+.|.+.-||.|+|++++|-+-+-+-+.+.=| ..-.|+.-...+
T Consensus 600 -----------------H~~A~fHAaaRAIsGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~pg 648 (865)
T PLN02982 600 -----------------HLCAEFHAGSRAICGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHYA 648 (865)
T ss_pred -----------------CchHHHHHHHHhhcCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCCC
Confidence 23458899999999999999998887776555433 344455554444
No 17
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.25 E-value=1.4e-10 Score=128.38 Aligned_cols=216 Identities=17% Similarity=0.212 Sum_probs=128.8
Q ss_pred CCCCCCceEe--cCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCC
Q 006666 31 VRASSPPRGW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP 108 (636)
Q Consensus 31 ~~a~tPPmGW--NSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~ 108 (636)
|-++.||. | --|.+-...-|++++++.++.+.+. ....+.++||+.|+.. ++.+..|+
T Consensus 20 G~~~~pP~-walG~~~~~~~~~~~~~v~~~i~~~~~~--~iP~d~~~iD~~~~~~-----------------~~~f~~d~ 79 (441)
T PF01055_consen 20 GRPPLPPR-WALGFWQSRWGYYNQDEVREVIDRYRSN--GIPLDVIWIDDDYQDG-----------------YGDFTWDP 79 (441)
T ss_dssp SSS----G-GGGSEEEEESTBTSHHHHHHHHHHHHHT--T--EEEEEE-GGGSBT-----------------TBTT-B-T
T ss_pred CCCCCCch-hhhceEeecCcCCCHHHHHHHHHHHHHc--CCCccceecccccccc-----------------cccccccc
Confidence 56677886 4 1222222235689999999877552 4457999999999753 46889999
Q ss_pred CCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCccccc-CcccchhhcccccccccccCCC
Q 006666 109 DRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHG 187 (636)
Q Consensus 109 ~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~~~~~c~~~~~~ 187 (636)
++||+ ++.+++.||++|+|+++|+.|++..... ..+ .|.+- ..++.+++.........+.++.
T Consensus 80 ~~FPd------~~~~~~~l~~~G~~~~~~~~P~v~~~~~--~~~--------~~~~~~~~~~~v~~~~g~~~~~~~w~g~ 143 (441)
T PF01055_consen 80 ERFPD------PKQMIDELHDQGIKVVLWVHPFVSNDSP--DYE--------NYDEAKEKGYLVKNPDGSPYIGRVWPGK 143 (441)
T ss_dssp TTTTT------HHHHHHHHHHTT-EEEEEEESEEETTTT--B-H--------HHHHHHHTT-BEBCTTSSB-EEEETTEE
T ss_pred ccccc------hHHHHHhHhhCCcEEEEEeecccCCCCC--cch--------hhhhHhhcCceeecccCCcccccccCCc
Confidence 99996 9999999999999999999998754321 000 11110 0122222221111112223333
Q ss_pred ceeecCCchHHHHHHHHHHHHHHhh-CCCEEEecCCCCCC----------------CChHH----H-----HHHHHHHHh
Q 006666 188 FMSVNTKLGAGRAFLRSLYQQYAEW-GVDFVKHDCVFGDD----------------LDINE----I-----SFVSEVLKE 241 (636)
Q Consensus 188 ~~~lD~t~p~aq~y~~s~~~~fa~W-GVDylK~D~~~~~~----------------~~~~~----~-----~am~~Al~~ 241 (636)
...+|.++|++++|+....+.+.+. |||++|+|+..... ....+ | ++..+++++
T Consensus 144 ~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~ 223 (441)
T PF01055_consen 144 GGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALRE 223 (441)
T ss_dssp EEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHH
T ss_pred ccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchheeccccccchhhhhhhhhh
Confidence 4679999999999998888888777 99999999843221 01111 2 345666655
Q ss_pred ---cCCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHHHHHhhh
Q 006666 242 ---LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSR 292 (636)
Q Consensus 242 ---~GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~ 292 (636)
..||++++-+... ..++|+..| ++|...+|..+..++...-
T Consensus 224 ~~~~~r~~~~sRs~~~--------G~qr~~~~w--~GD~~s~w~~L~~~i~~~l 267 (441)
T PF01055_consen 224 IDPNKRPFIFSRSGWA--------GSQRYGGHW--SGDNSSSWDGLRSSIPAML 267 (441)
T ss_dssp HSTTSC-EEEESSEET--------TGGGTCEEE--ECSSBSSHHHHHHHHHHHH
T ss_pred ccCCCCcceeecccCC--------CCCccceee--cccccccHHHHHHHHHHHH
Confidence 4578998876311 113455665 7899999999888766543
No 18
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.21 E-value=6e-10 Score=119.71 Aligned_cols=196 Identities=19% Similarity=0.235 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006666 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (636)
Q Consensus 50 ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHs 129 (636)
-|+++|++.++.+.+. ..-++.|.||..|+.. ++.+..|+++||+ .+.+.+.+|+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~~-----------------~~~f~~d~~~fPd------p~~m~~~l~~ 75 (339)
T cd06604 21 YPEEEVREIADEFRER--DIPCDAIYLDIDYMDG-----------------YRVFTWDKERFPD------PKELIKELHE 75 (339)
T ss_pred CCHHHHHHHHHHHHHh--CCCcceEEECchhhCC-----------------CCceeeccccCCC------HHHHHHHHHH
Confidence 4789999999876442 2336899999999742 4678889999996 9999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCccccc-CcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHH
Q 006666 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (636)
Q Consensus 130 kGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~ 208 (636)
+|+|+-+|+.|.+... ++.+. |.+. ..++.+++.......-.+.++.-..+|.++|+|++|+.+..+.
T Consensus 76 ~g~~~~~~~~P~v~~~---~~~~~--------~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 144 (339)
T cd06604 76 QGFKVVTIIDPGVKVD---PGYDV--------YEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKK 144 (339)
T ss_pred CCCEEEEEEeCceeCC---CCChH--------HHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHH
Confidence 9999999999987532 22221 2110 0122222221111111122333346899999999999888888
Q ss_pred HHhhCCCEEEecCCCCC----------CC-----------ChHH----H-----HHHHHHHHhc---CCCeEEEcCCCCC
Q 006666 209 YAEWGVDFVKHDCVFGD----------DL-----------DINE----I-----SFVSEVLKEL---DRPIVYSLSPGTG 255 (636)
Q Consensus 209 fa~WGVDylK~D~~~~~----------~~-----------~~~~----~-----~am~~Al~~~---GrpI~lSls~g~~ 255 (636)
+.+.|||++|+|+.... +. ...+ | ++..+++++. .||++++=+-..
T Consensus 145 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~- 223 (339)
T cd06604 145 FVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYA- 223 (339)
T ss_pred HhhCCCceEeecCCCccccCCcccccCCccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccc-
Confidence 88999999999975321 00 1111 1 3455555554 478888866311
Q ss_pred CChhhhhhhccccceEEecCCCcCchHHHHHHHHhh
Q 006666 256 VTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (636)
Q Consensus 256 ~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (636)
..++|+-. -++|...+|+.++.++...
T Consensus 224 -------G~qry~~~--W~GD~~ssW~~L~~~i~~~ 250 (339)
T cd06604 224 -------GIQRYAAV--WTGDNRSSWEHLRLSIPML 250 (339)
T ss_pred -------cccccccc--cCCcccCCHHHHHHHHHHH
Confidence 11244434 3589999999888766543
No 19
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.17 E-value=1.5e-09 Score=125.78 Aligned_cols=212 Identities=21% Similarity=0.294 Sum_probs=140.1
Q ss_pred CCCCCCce---E-ecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCccc
Q 006666 31 VRASSPPR---G-WNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (636)
Q Consensus 31 ~~a~tPPm---G-WNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~p 106 (636)
|.++.||. | |-|. .|..+.+|++|++.|+.+.+. ..-.+.|.+|+.|+... .++.++.
T Consensus 258 Grp~lpP~WalG~w~s~-~~~~~~~e~~v~~~~~~~r~~--~iP~d~i~lD~~w~~~~---------------~~~~f~w 319 (665)
T PRK10658 258 GRPALPPAWSFGLWLTT-SFTTNYDEATVNSFIDGMAER--DLPLHVFHFDCFWMKEF---------------QWCDFEW 319 (665)
T ss_pred CCCCCCchhhhheeeec-ccccCCCHHHHHHHHHHHHHc--CCCceEEEEchhhhcCC---------------ceeeeEE
Confidence 55666774 3 4443 244456899999999987652 33468999999997531 3568999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCC
Q 006666 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQH 186 (636)
Q Consensus 107 d~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~ 186 (636)
|+++||+ .+.++++||++|+|+-+|+.|++.. ++++..... ..++..++.......-...++
T Consensus 320 d~~~FPd------p~~mi~~L~~~G~k~~~~i~P~i~~-----~s~~f~e~~-------~~gy~vk~~~G~~~~~~~W~g 381 (665)
T PRK10658 320 DPRTFPD------PEGMLKRLKAKGLKICVWINPYIAQ-----KSPLFKEGK-------EKGYLLKRPDGSVWQWDKWQP 381 (665)
T ss_pred ChhhCCC------HHHHHHHHHHCCCEEEEeccCCcCC-----CchHHHHHH-------HCCeEEECCCCCEeeeeecCC
Confidence 9999997 8999999999999999999998742 333222110 012333332211111111233
Q ss_pred CceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCC--------CCCChHH----H-----HHHHHHHHhc---CCCe
Q 006666 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG--------DDLDINE----I-----SFVSEVLKEL---DRPI 246 (636)
Q Consensus 187 ~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~--------~~~~~~~----~-----~am~~Al~~~---GrpI 246 (636)
.-..+|.++|+|++|+.+..+.+.+.|||.+|.|+... +..++.+ | ++..+++++. .||+
T Consensus 382 ~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~ 461 (665)
T PRK10658 382 GMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVFDVLKETRGEGEAV 461 (665)
T ss_pred CceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHHHHHHHhcCCCceE
Confidence 34579999999999999888889999999999997421 1112211 1 4556666653 4788
Q ss_pred EEEcCC--CCCCChhhhhhhccccceEEecCCCcCchHHHHHHHHh
Q 006666 247 VYSLSP--GTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNV 290 (636)
Q Consensus 247 ~lSls~--g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~ 290 (636)
+|+=|. |. ++|+-.| ++|+..+|+.+..++..
T Consensus 462 i~tRs~~aGs----------Qry~~~W--sGD~~stw~~l~~si~~ 495 (665)
T PRK10658 462 LFARSATVGG----------QQFPVHW--GGDCYSNYESMAESLRG 495 (665)
T ss_pred EEEecccCCC----------CCCCCEE--CCCCCCCHHHHHHHHHH
Confidence 888663 22 2454445 58999999998876653
No 20
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.15 E-value=9e-10 Score=117.45 Aligned_cols=195 Identities=16% Similarity=0.237 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006666 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (636)
Q Consensus 50 ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHs 129 (636)
-++++|++.++-+.+. ....+.|.||..|+... .+|.+..|++|||+ .+.++++||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~~~---------------~~~~f~~d~~~FPd------p~~mi~~L~~ 77 (319)
T cd06591 21 KTQEELLDVAKEYRKR--GIPLDVIVQDWFYWPKQ---------------GWGEWKFDPERFPD------PKAMVRELHE 77 (319)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEechhhcCC---------------CceeEEEChhhCCC------HHHHHHHHHH
Confidence 3899999999977542 34579999998887431 23589999999997 9999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCccccc-CcccchhhcccccccccccCCCceeecCCchHHHHHHHH-HHH
Q 006666 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRS-LYQ 207 (636)
Q Consensus 130 kGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s-~~~ 207 (636)
+|+|+-+++.|++.. +++. |++- ..++.+++....... .+.++....+|.++|++++|+.+ +.+
T Consensus 78 ~G~kv~~~i~P~v~~-----~~~~--------y~e~~~~g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 78 MNAELMISIWPTFGP-----ETEN--------YKEMDEKGYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred CCCEEEEEecCCcCC-----CChh--------HHHHHHCCEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 999999999998742 2221 2210 012333332211111 12334345799999999998754 445
Q ss_pred HHHhhCCCEEEecCCCCC-----C------C---ChH----HH-----HHHHHHHHhc---CCCeEEEcCCCCCCChhhh
Q 006666 208 QYAEWGVDFVKHDCVFGD-----D------L---DIN----EI-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMA 261 (636)
Q Consensus 208 ~fa~WGVDylK~D~~~~~-----~------~---~~~----~~-----~am~~Al~~~---GrpI~lSls~g~~~~~~~a 261 (636)
.+.+.|||++|+|+.... . + ... .| ++..+++++. .||++++=+-..
T Consensus 144 ~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~------- 216 (319)
T cd06591 144 NYYDKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWA------- 216 (319)
T ss_pred HhhcCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEecccc-------
Confidence 678999999999985311 0 0 001 12 3455566554 488888865311
Q ss_pred hhhccccc-eEEecCCCcCchHHHHHHHHhh
Q 006666 262 KEVSGLVN-MYRITGDDWDTWGDVAAHFNVS 291 (636)
Q Consensus 262 ~~~~~~an-~wRis~Di~d~W~~i~~~~~~~ 291 (636)
..++|+. .| ++|...+|+.++..+...
T Consensus 217 -Gsqry~~~~W--~GD~~s~w~~L~~~i~~~ 244 (319)
T cd06591 217 -GSQRYGALVW--SGDIDSSWETLRRQIAAG 244 (319)
T ss_pred -ccccccCcee--CCCccccHHHHHHHHHHH
Confidence 0134543 34 389999999988776544
No 21
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.13 E-value=1.8e-09 Score=113.72 Aligned_cols=208 Identities=19% Similarity=0.233 Sum_probs=131.8
Q ss_pred CCCCCCce---Ee--cCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcc
Q 006666 31 VRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (636)
Q Consensus 31 ~~a~tPPm---GW--NSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~ 105 (636)
|.++.||. |+ |-|. .-|+++|++.|+-+.+. ..-++.|.||..|+....+. ..++.++.++
T Consensus 2 G~~~~~P~walG~~qsr~~----y~s~~ev~~v~~~~r~~--~iP~D~i~lD~dw~~~~~~~--------~~~~~~~~ft 67 (292)
T cd06595 2 GKIPLLPRYAFGNWWSRYW----PYSDEEYLALMDRFKKH--NIPLDVLVIDMDWHVTDIPS--------KYGSGWTGYS 67 (292)
T ss_pred CCCCCCchHHHHhHhhCCc----CCCHHHHHHHHHHHHHh--CCCccEEEEecccccccccc--------cccCCcceeE
Confidence 45666773 32 3332 24899999999976542 33478999999998642100 0135678999
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccC
Q 006666 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ 185 (636)
Q Consensus 106 pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~ 185 (636)
.|+++||+ .+.|+++||++|+|+-+++.|++. +.+..+ .|++ .+++... ....
T Consensus 68 ~d~~~FPd------p~~mi~~Lh~~G~k~v~~v~P~~~---~~~~~~--------~y~~-----~~~~~~~-----~~~~ 120 (292)
T cd06595 68 WNRKLFPD------PEKLLQDLHDRGLKVTLNLHPADG---IRAHED--------QYPE-----MAKALGV-----DPAT 120 (292)
T ss_pred EChhcCCC------HHHHHHHHHHCCCEEEEEeCCCcc---cCCCcH--------HHHH-----HHHhcCC-----Cccc
Confidence 99999996 999999999999999999999752 111111 1221 0111110 0011
Q ss_pred CCceeecCCchHHHHHH-HHHHHHHHhhCCCEEEecCCCCC-----CCChHHH-H-HHHHHH-HhcCCCeEEEcCCCCCC
Q 006666 186 HGFMSVNTKLGAGRAFL-RSLYQQYAEWGVDFVKHDCVFGD-----DLDINEI-S-FVSEVL-KELDRPIVYSLSPGTGV 256 (636)
Q Consensus 186 ~~~~~lD~t~p~aq~y~-~s~~~~fa~WGVDylK~D~~~~~-----~~~~~~~-~-am~~Al-~~~GrpI~lSls~g~~~ 256 (636)
.....+|.++|++++++ +.+.+.+.+.|||+++.|...+. ...+... . ...... +..+||++++=|-..
T Consensus 121 ~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~~y~~~~~~~~r~f~lsRs~~~-- 198 (292)
T cd06595 121 EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHVHYLDSARNGRRPLIFSRWAGL-- 198 (292)
T ss_pred CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHHHHHHHhhccCCCcEEEEeeccc--
Confidence 22346899999998855 77778889999999999975321 1121111 0 011111 134789999866311
Q ss_pred ChhhhhhhccccceEEecCCCcCchHHHHHHHH
Q 006666 257 TPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (636)
Q Consensus 257 ~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~ 289 (636)
..++|+-.| ++|+..+|+.+..++.
T Consensus 199 ------G~qry~~~W--sGD~~s~W~~l~~~i~ 223 (292)
T cd06595 199 ------GSHRYPIGF--SGDTIISWASLAFQPY 223 (292)
T ss_pred ------CCCcCCCcc--CCCcccCHHHHHHHHH
Confidence 124677778 7999999999886553
No 22
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.11 E-value=3.7e-09 Score=112.64 Aligned_cols=199 Identities=16% Similarity=0.165 Sum_probs=127.4
Q ss_pred cCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHH
Q 006666 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (636)
Q Consensus 49 ~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iH 128 (636)
..++++|++.++.+.+. ..-++.|.||++|+... + ...+.+.-|+++||+ .+.|++.||
T Consensus 25 ~~~q~~v~~~~~~~r~~--~iP~d~i~ld~~~~~~~--~-----------~~~~~f~~d~~~FPd------p~~mi~~L~ 83 (317)
T cd06599 25 PDAQEALLEFIDKCREH--DIPCDSFHLSSGYTSIE--G-----------GKRYVFNWNKDRFPD------PAAFVAKFH 83 (317)
T ss_pred ccHHHHHHHHHHHHHHc--CCCeeEEEEeccccccC--C-----------CceeeeecCcccCCC------HHHHHHHHH
Confidence 35699999999876542 23478999999998541 0 123457888999997 999999999
Q ss_pred HcCCEEEEEeecCccccccCCCCcccccccCCccccc-Ccccchhhcccc-cccccccCCCceeecCCchHHHHHHHHHH
Q 006666 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLK-ERACAWMQHGFMSVNTKLGAGRAFLRSLY 206 (636)
Q Consensus 129 skGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~~-~~~c~~~~~~~~~lD~t~p~aq~y~~s~~ 206 (636)
++|+|+-+|+.|++.. .++. |++- ..++.+++.... ...-.+.++.-..+|.++|+|++|+.+.+
T Consensus 84 ~~g~k~~~~i~P~i~~-----~~~~--------y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 150 (317)
T cd06599 84 ERGIRLAPNIKPGLLQ-----DHPR--------YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGV 150 (317)
T ss_pred HCCCEEEEEeCCcccC-----CCHH--------HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHH
Confidence 9999999999998742 1221 2210 012333332111 01111222322469999999999997776
Q ss_pred -HHHHhhCCCEEEecCCCCC-----C--------CChHH----H-----HHHHHHHHhc---CCCeEEEcCCCCCCChhh
Q 006666 207 -QQYAEWGVDFVKHDCVFGD-----D--------LDINE----I-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAM 260 (636)
Q Consensus 207 -~~fa~WGVDylK~D~~~~~-----~--------~~~~~----~-----~am~~Al~~~---GrpI~lSls~g~~~~~~~ 260 (636)
+.+.+.|||++|+|.+... . .+..+ | ++..+++++. .||++++=|-..
T Consensus 151 ~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~------ 224 (317)
T cd06599 151 KEALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFA------ 224 (317)
T ss_pred HHHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcc------
Confidence 6788999999999976321 0 11111 1 3455566543 478888765311
Q ss_pred hhhhccccceEEecCCCcCchHHHHHHHHhh
Q 006666 261 AKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (636)
Q Consensus 261 a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (636)
..++|+-+| ++|+..+|+.+..++...
T Consensus 225 --G~qry~~~W--sGD~~s~W~~L~~~i~~~ 251 (317)
T cd06599 225 --GIQRYAQTW--SGDNRTSWKTLRYNIAMG 251 (317)
T ss_pred --cccCCcCee--CCCcccCHHHHHHHHHHH
Confidence 113454555 589999999988776543
No 23
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.09 E-value=5.6e-09 Score=112.38 Aligned_cols=231 Identities=14% Similarity=0.147 Sum_probs=133.3
Q ss_pred CCCCCceEec--CcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccc--c-----CCC
Q 006666 32 RASSPPRGWN--SYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVI--D-----EWG 102 (636)
Q Consensus 32 ~a~tPPmGWN--SW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~--D-----~~G 102 (636)
.++.||. |. -|.+-...-++++|++.|+-+.+. ..-++.|.||+ |+..... +.-.+ .+.+ | .++
T Consensus 2 ~p~lpP~-walG~~~sr~~Y~~~~ev~~v~~~~~~~--~iP~d~i~lD~-W~~~~~~--~~w~d-~~y~~~~~~~~~~~~ 74 (340)
T cd06597 2 KPELLPK-WAFGLWMSANEWDTQAEVMRQMDAHEEH--GIPVTVVVIEQ-WSDEATF--YVFND-AQYTPKDGGAPLSYD 74 (340)
T ss_pred CCCCCch-HHhhhhhhccCCCCHHHHHHHHHHHHHc--CCCeeEEEEec-ccCccee--eeecc-chhcccccCCcceec
Confidence 4566774 33 333322346899999999977542 23378999995 8853100 00000 0001 1 123
Q ss_pred CcccC-CCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccc-cCcccchhhccccccc
Q 006666 103 RMIPD-PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGLKERA 180 (636)
Q Consensus 103 ~l~pd-~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~-~g~~~~~~Di~~~~~~ 180 (636)
...-+ .+|||+ .+.|+++||++|+|+-+|+.|.+.... .+. +.. ...|.+ ...++.+++.......
T Consensus 75 ~~~f~~~~~FPd------p~~mi~~Lh~~G~kv~l~v~P~i~~~~-~~~----~~~-~~~~~~~~~~g~~vk~~~G~~~~ 142 (340)
T cd06597 75 DFSFPVEGRWPN------PKGMIDELHEQGVKVLLWQIPIIKLRP-HPH----GQA-DNDEDYAVAQNYLVQRGVGKPYR 142 (340)
T ss_pred ccccCccccCCC------HHHHHHHHHHCCCEEEEEecCcccccc-ccc----ccc-chhHHHHHHCCEEEEcCCCCccc
Confidence 44444 368996 999999999999999999999885321 000 000 001110 0112334333221111
Q ss_pred c-cccCCCceeecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCC---CC------CChHH--------H-HHHHHHHH
Q 006666 181 C-AWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFG---DD------LDINE--------I-SFVSEVLK 240 (636)
Q Consensus 181 c-~~~~~~~~~lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~~~---~~------~~~~~--------~-~am~~Al~ 240 (636)
- .+.++.-..+|.++|+|++|..+.++.+. +.|||.+|+|+.-. .. ....+ + +++.++++
T Consensus 143 ~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~ 222 (340)
T cd06597 143 IPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLR 222 (340)
T ss_pred cccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHH
Confidence 0 22333335799999999999988887765 79999999996421 10 01111 1 45666666
Q ss_pred hcC-CCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHHHHHhh
Q 006666 241 ELD-RPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (636)
Q Consensus 241 ~~G-rpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (636)
+.+ ||++++=|-... .++|+=.| ++|...+|+.++.++...
T Consensus 223 ~~~~r~filtRs~~~G--------sqry~~~W--sGD~~s~W~~L~~~i~~~ 264 (340)
T cd06597 223 RAKKDGVTFSRAGYTG--------AQAHGIFW--AGDENSTFGAFRWSVFAG 264 (340)
T ss_pred hccCCcEEEEecccCc--------cCCCccee--cCCCCCCHHHHHHHHHHH
Confidence 655 788887663110 13455456 789999999988776543
No 24
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=99.09 E-value=7.3e-09 Score=111.45 Aligned_cols=199 Identities=16% Similarity=0.101 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCCh--HHHHHHH
Q 006666 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGF--TEVAKKV 127 (636)
Q Consensus 50 ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gm--k~Lad~i 127 (636)
-++++|++.++-+.+. ..-.+.|.||.+|+.. ++.+..|+++||+ . +.++++|
T Consensus 21 ~~~~~v~~~~~~~r~~--~iP~d~i~lD~~~~~~-----------------~~~f~~d~~~FPd------p~~~~mi~~L 75 (339)
T cd06602 21 KNVDEVKEVVENMRAA--GIPLDVQWNDIDYMDR-----------------RRDFTLDPVRFPG------LKMPEFVDEL 75 (339)
T ss_pred CCHHHHHHHHHHHHHh--CCCcceEEECcccccC-----------------ccceecccccCCC------ccHHHHHHHH
Confidence 3789999999877542 2336889999999743 4789999999997 7 9999999
Q ss_pred HHcCCEEEEEeecCccccccCCCCcccccccCCccccc-CcccchhhcccccccccccCCCceeecCCchHHHHHHHHHH
Q 006666 128 HAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLY 206 (636)
Q Consensus 128 HskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~ 206 (636)
|++|+|+-+|+.|++.......+.+. |.+. ..++.+++.........+.++.-..+|.++|+|++|+.+.+
T Consensus 76 ~~~G~k~~~~i~P~v~~~~~~~~~~~--------~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 76 HANGQHYVPILDPAISANEPTGSYPP--------YDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHCCCEEEEEEeCccccCcCCCCCHH--------HHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 99999999999998853211112221 2110 11233333222111222233333468999999999998877
Q ss_pred HH-HHhhCCCEEEecCCCCCCC-------ChHHHHHHHHHHHh-c-CCCeEEEcCCCCCCChhhhhhhccccceEEecCC
Q 006666 207 QQ-YAEWGVDFVKHDCVFGDDL-------DINEISFVSEVLKE-L-DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGD 276 (636)
Q Consensus 207 ~~-fa~WGVDylK~D~~~~~~~-------~~~~~~am~~Al~~-~-GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~D 276 (636)
+. +.+.|||++|.|+.....+ ....-++..+++++ . .||++++=|-... .+.|+-. -++|
T Consensus 148 ~~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G--------~qry~~~--w~GD 217 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIATYKALQSIPGKRPFVISRSTFPG--------SGRYAGH--WLGD 217 (339)
T ss_pred HHHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHHHHHHHhcCCCCCEEEEecCccc--------cccccee--ECCC
Confidence 76 5669999999998543211 10111344555554 3 3688887663111 1234433 3689
Q ss_pred CcCchHHHHHHHHhh
Q 006666 277 DWDTWGDVAAHFNVS 291 (636)
Q Consensus 277 i~d~W~~i~~~~~~~ 291 (636)
...+|+.+..++...
T Consensus 218 ~~s~W~~L~~~i~~~ 232 (339)
T cd06602 218 NASTWEDLRYSIIGM 232 (339)
T ss_pred ccCCHHHHHHHHHHH
Confidence 999999887765543
No 25
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.08 E-value=5.8e-09 Score=111.21 Aligned_cols=196 Identities=15% Similarity=0.201 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006666 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (636)
Q Consensus 50 ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHs 129 (636)
-|++++++.++-+.+. ..-.+.|.||..|+. .++.+..|+++||+ .+.+++.+|+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~~i~~l~~ 75 (317)
T cd06600 21 YPQDKVVEVVDIMQKE--GFPYDVVFLDIHYMD-----------------SYRLFTWDPYRFPE------PKKLIDELHK 75 (317)
T ss_pred CCHHHHHHHHHHHHHc--CCCcceEEEChhhhC-----------------CCCceeechhcCCC------HHHHHHHHHH
Confidence 3799999999876542 334789999999974 24678889999997 8999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCcccc-cCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHH
Q 006666 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (636)
Q Consensus 130 kGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~-~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~ 208 (636)
+|+|+-+|+.|++... .+.+. |.+ ...++.+++.........+.++.-..+|.++|++++|+.+.++.
T Consensus 76 ~g~k~~~~~~P~i~~~---~~~~~--------~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~ 144 (317)
T cd06600 76 RNVKLVTIVDPGIRVD---QNYSP--------FLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSE 144 (317)
T ss_pred CCCEEEEEeeccccCC---CCChH--------HHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHH
Confidence 9999999999998521 11111 111 00122232221111112223443346899999999999888877
Q ss_pred HH-hhCCCEEEecCCCCCCC---C----hHHHHHHHHHHHh---cCCCeEEEcCCCCCCChhhhhhhccccceEEecCCC
Q 006666 209 YA-EWGVDFVKHDCVFGDDL---D----INEISFVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDD 277 (636)
Q Consensus 209 fa-~WGVDylK~D~~~~~~~---~----~~~~~am~~Al~~---~GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di 277 (636)
+. +.|||++|+|......+ + .....+..+++++ ..||++++=|-... .+.|+-. -++|.
T Consensus 145 ~~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G--------~qry~~~--W~GD~ 214 (317)
T cd06600 145 WLNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAG--------SQKYAAI--WTGDN 214 (317)
T ss_pred HhhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHHHhcCCCCceEEEeccccc--------cCCccce--ECCcc
Confidence 65 99999999998542211 1 1111334455544 35799988763111 1244433 46899
Q ss_pred cCchHHHHHHHHhh
Q 006666 278 WDTWGDVAAHFNVS 291 (636)
Q Consensus 278 ~d~W~~i~~~~~~~ 291 (636)
..+|+.+...+...
T Consensus 215 ~s~W~~L~~~i~~~ 228 (317)
T cd06600 215 TASWDDLKLSIPLV 228 (317)
T ss_pred cccHHHHHHHHHHH
Confidence 99999888766543
No 26
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=99.06 E-value=1.4e-08 Score=108.34 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCC-----CcccCCCCCCCCCCCCChHHHHH
Q 006666 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWG-----RMIPDPDRWPSSRGGKGFTEVAK 125 (636)
Q Consensus 51 tE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G-----~l~pd~~kFPs~~~~~Gmk~Lad 125 (636)
++++|++.++-+.+. ..-.+.|.|| .|+.... +..| .++.|+++||+ .+.|++
T Consensus 21 s~~~v~~~~~~~~~~--~iP~d~i~ld-dw~~~~~-------------~~~g~~~~~~f~~d~~~FPd------p~~mi~ 78 (317)
T cd06594 21 GTDKVLEALEKARAA--GVKVAGLWLQ-DWTGRRE-------------TSFGDRLWWNWEWDPERYPG------LDELIE 78 (317)
T ss_pred CHHHHHHHHHHHHHc--CCCeeEEEEc-cccCccc-------------ccccceeeeeeEEChhhCCC------HHHHHH
Confidence 999999999977542 2336899999 5864210 1123 47899999997 999999
Q ss_pred HHHHcCCEEEEEeecCccccccCCCCcccccccCCcccc-cCcccchhhcccccccccccCCCceeecCCchHHHHHHHH
Q 006666 126 KVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRS 204 (636)
Q Consensus 126 ~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~-~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s 204 (636)
+||++|+|+-+++.|++... ++- .|++ ...++..++.......-.+.++.-..+|.++|+|++|+.+
T Consensus 79 ~Lh~~G~~~~~~i~P~v~~~-----~~~-------~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 146 (317)
T cd06594 79 ELKARGIRVLTYINPYLADD-----GPL-------YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQ 146 (317)
T ss_pred HHHHCCCEEEEEecCceecC-----Cch-------hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHH
Confidence 99999999999999987431 110 0111 0112333332211111112222224699999999999976
Q ss_pred HHHHH-HhhCCCEEEecCCCCCC--------CChHH----H-----HHHHHHHHhc---CCCeEEEcCCCCCCChhhhhh
Q 006666 205 LYQQY-AEWGVDFVKHDCVFGDD--------LDINE----I-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMAKE 263 (636)
Q Consensus 205 ~~~~f-a~WGVDylK~D~~~~~~--------~~~~~----~-----~am~~Al~~~---GrpI~lSls~g~~~~~~~a~~ 263 (636)
.++.+ .+.|||.+|.|+....+ .+..+ | ++..+++++. +||++++=|-.. .
T Consensus 147 ~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~--------G 218 (317)
T cd06594 147 VIKEMLLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFT--------G 218 (317)
T ss_pred HHHHHhhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEccccc--------c
Confidence 66654 88999999999743111 11111 2 3345555554 578888866311 1
Q ss_pred hccccc-eEEecCCCcCchH---HHHHHHHh
Q 006666 264 VSGLVN-MYRITGDDWDTWG---DVAAHFNV 290 (636)
Q Consensus 264 ~~~~an-~wRis~Di~d~W~---~i~~~~~~ 290 (636)
.++|+. .| ++|...+|+ .+..++..
T Consensus 219 sqry~~~~W--sGD~~s~W~~~~~L~~~i~~ 247 (317)
T cd06594 219 SQKYSTLFW--AGDQMVSWDAHDGLKSVVPG 247 (317)
T ss_pred ccccccccc--CCCCCCCCcCcccHHHHHHH
Confidence 135655 35 589999998 46655543
No 27
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.05 E-value=6.8e-09 Score=110.65 Aligned_cols=201 Identities=12% Similarity=0.099 Sum_probs=129.2
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006666 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (636)
Q Consensus 50 ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHs 129 (636)
-+++++++.++-+.+. ..-.+.|.||.+|+..... ...+|.+..|++|||+ .+.|+++||+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~w~~~~~~-----------~~~~~~f~wd~~~FPd------p~~mi~~L~~ 81 (317)
T cd06598 21 RNWQEVDDTIKTLREK--DFPLDAAILDLYWFGKDID-----------KGHMGNLDWDRKAFPD------PAGMIADLAK 81 (317)
T ss_pred CCHHHHHHHHHHHHHh--CCCceEEEEechhhcCccc-----------CCceeeeEeccccCCC------HHHHHHHHHH
Confidence 4799999999877542 3347899999999864210 0246789999999997 9999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCccccc-Ccccchhhccc-ccccccccCCCceeecCCchHHHHHHHHHHH
Q 006666 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGL-KERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (636)
Q Consensus 130 kGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~-~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~ 207 (636)
+|+|+-+|+.|++.. +++. |++- ..++.+.+... ....-.+.++.-..+|.|+|++++|+.+..+
T Consensus 82 ~G~k~~~~v~P~v~~-----~~~~--------y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 148 (317)
T cd06598 82 KGVKTIVITEPFVLK-----NSKN--------WGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYK 148 (317)
T ss_pred cCCcEEEEEcCcccC-----Cchh--------HHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHH
Confidence 999999999998743 2222 2110 01121111110 0011112233335799999999999988888
Q ss_pred HHHhhCCCEEEecCCCCCCC---------ChHH----H-----HHHHHHHHh---cCCCeEEEcCCCCCCChhhhhhhcc
Q 006666 208 QYAEWGVDFVKHDCVFGDDL---------DINE----I-----SFVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSG 266 (636)
Q Consensus 208 ~fa~WGVDylK~D~~~~~~~---------~~~~----~-----~am~~Al~~---~GrpI~lSls~g~~~~~~~a~~~~~ 266 (636)
.+.+.|||++|.|++..... ...+ | +++.+++++ ..||++++=|-.. -.++
T Consensus 149 ~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~--------Gsqr 220 (317)
T cd06598 149 KLIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFA--------GSQR 220 (317)
T ss_pred HhhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcC--------cccc
Confidence 88999999999998742100 1111 2 344555554 3478888766311 0124
Q ss_pred ccc-eEEecCCCcCchHHHHHHHHhhh
Q 006666 267 LVN-MYRITGDDWDTWGDVAAHFNVSR 292 (636)
Q Consensus 267 ~an-~wRis~Di~d~W~~i~~~~~~~~ 292 (636)
|+. .| ++|...+|+.+..++...-
T Consensus 221 y~~~~W--sGD~~s~W~~L~~~i~~~l 245 (317)
T cd06598 221 YGVIPW--SGDVGRTWDGLKSQPNAAL 245 (317)
T ss_pred CcCCcc--CCCCcCCHHHHHHHHHHHH
Confidence 432 24 4899999999887765443
No 28
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=99.04 E-value=9.6e-09 Score=110.18 Aligned_cols=171 Identities=15% Similarity=0.194 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006666 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (636)
Q Consensus 50 ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHs 129 (636)
-|+++|++.++.+.+. ..-++.|.+|..|+. .++.++.|+++||+ .+.+++.||+
T Consensus 21 ~~~~ev~~v~~~~r~~--~IP~D~i~lDidy~~-----------------~~~~Ft~d~~~FPd------p~~mv~~L~~ 75 (332)
T cd06601 21 SNRSDLEEVVEGYRDN--NIPLDGLHVDVDFQD-----------------NYRTFTTNGGGFPN------PKEMFDNLHN 75 (332)
T ss_pred CCHHHHHHHHHHHHHc--CCCCceEEEcCchhc-----------------CCCceeecCCCCCC------HHHHHHHHHH
Confidence 4899999999977542 344789999999973 35789999999997 8999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHH
Q 006666 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (636)
Q Consensus 130 kGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~f 209 (636)
+|+|..+++.|++.. |. .| + .++ ..+|.++|++++|....++.+
T Consensus 76 ~G~klv~~i~P~i~~----------g~-----------~~-----------~--~~~--~~pDftnp~ar~wW~~~~~~l 119 (332)
T cd06601 76 KGLKCSTNITPVISY----------GG-----------GL-----------G--SPG--LYPDLGRPDVREWWGNQYKYL 119 (332)
T ss_pred CCCeEEEEecCceec----------Cc-----------cC-----------C--CCc--eeeCCCCHHHHHHHHHHHHHH
Confidence 999999999998751 10 01 0 011 247999999999998888888
Q ss_pred HhhCCCEEEecCCCC------CC---C-----------------Ch-HH----H-----HHHHHHHHhc-----CCCeEE
Q 006666 210 AEWGVDFVKHDCVFG------DD---L-----------------DI-NE----I-----SFVSEVLKEL-----DRPIVY 248 (636)
Q Consensus 210 a~WGVDylK~D~~~~------~~---~-----------------~~-~~----~-----~am~~Al~~~-----GrpI~l 248 (636)
.+-|||+++.|.... .. + .+ .+ | ++..+++++. .||+++
T Consensus 120 ~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~Y~~~~~~a~~e~~~~~~~~~~~Rpfil 199 (332)
T cd06601 120 FDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNLYSYNLHKATWHGLNNLNARKNKRNFII 199 (332)
T ss_pred HhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhhhHHHHHHHHHHHHHHhhcCCCCCcEEE
Confidence 889999999995321 00 0 00 11 1 3444555432 489999
Q ss_pred EcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHHHHHhh
Q 006666 249 SLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (636)
Q Consensus 249 Sls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (636)
+=|-.. ..++|+-.| ++|+..+|+.++.++...
T Consensus 200 tRS~~a--------GsqrY~~~W--sGDn~stW~~L~~si~~~ 232 (332)
T cd06601 200 GRGSYA--------GMQRFAGLW--TGDNSSSWDFLQINIAQV 232 (332)
T ss_pred EecCcC--------ccCCcCcee--CCCcccCHHHHHHHHHHH
Confidence 866311 113566665 699999999988765443
No 29
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=98.96 E-value=4.8e-08 Score=101.55 Aligned_cols=168 Identities=20% Similarity=0.295 Sum_probs=114.6
Q ss_pred CCCCCceEec--CcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCc--ccC
Q 006666 32 RASSPPRGWN--SYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRM--IPD 107 (636)
Q Consensus 32 ~a~tPPmGWN--SW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l--~pd 107 (636)
.++.||. |. .|.+.....++++|++.++-+.+. ...++.|.||++|+.. +|.+ ..|
T Consensus 2 ~p~~~P~-wa~G~~~~~~~~~~~~~v~~~~~~~~~~--~iP~d~~~lD~~~~~~-----------------~~~f~~~~d 61 (265)
T cd06589 2 KPALPPK-WAFGYWLSRYGYGDQDKVLEVIDGMREN--DIPLDGFVLDDDYTDG-----------------YGDFTFDWD 61 (265)
T ss_pred CCCCCcH-HHHHHHHhcCCCCCHHHHHHHHHHHHHc--CCCccEEEECcccccC-----------------CceeeeecC
Confidence 4566775 42 444444467999999999876442 3347899999999854 2444 899
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCC
Q 006666 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (636)
Q Consensus 108 ~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~ 187 (636)
+++||+ ++.++++||++|+|+.+|+.|++
T Consensus 62 ~~~Fpd------p~~~i~~l~~~g~~~~~~~~P~v--------------------------------------------- 90 (265)
T cd06589 62 AGKFPN------PKSMIDELHDNGVKLVLWIDPYI--------------------------------------------- 90 (265)
T ss_pred hhhCCC------HHHHHHHHHHCCCEEEEEeChhH---------------------------------------------
Confidence 999997 99999999999999999998743
Q ss_pred ceeecCCchHHHHHHHHHHHH-HHhhCCCEEEecCCCCCCC-------------ChHH----H-----HHHHHHHHhc--
Q 006666 188 FMSVNTKLGAGRAFLRSLYQQ-YAEWGVDFVKHDCVFGDDL-------------DINE----I-----SFVSEVLKEL-- 242 (636)
Q Consensus 188 ~~~lD~t~p~aq~y~~s~~~~-fa~WGVDylK~D~~~~~~~-------------~~~~----~-----~am~~Al~~~-- 242 (636)
++|+.+.++. +.+.|||++|+|....... ...+ | +++.+++++.
T Consensus 91 -----------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~ 159 (265)
T cd06589 91 -----------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSK 159 (265)
T ss_pred -----------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcC
Confidence 3344444444 4899999999997532111 1111 1 3456666544
Q ss_pred -CCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHHHHHhh
Q 006666 243 -DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (636)
Q Consensus 243 -GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (636)
.||++++-|-... .++|+-.| ++|...+|+.++.++...
T Consensus 160 ~~r~~~~sRs~~~G--------sqry~~~W--~GD~~stW~~l~~~i~~~ 199 (265)
T cd06589 160 NKRPFILSRSGYAG--------SQRYAGMW--SGDNTSTWGYLRSQIPAG 199 (265)
T ss_pred CCCeEEEEcCCccc--------ccCcCcee--CCcccCCHHHHHHHHHHH
Confidence 4788888763111 13454343 689999999988776543
No 30
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.91 E-value=5.3e-08 Score=104.77 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006666 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (636)
Q Consensus 50 ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHs 129 (636)
-|+++|++.|+.+.+. ..-.+.|.||..|+.. ++.+..|+++||+ .+.+++.||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~~-----------------~~~f~~d~~~FPd------p~~mi~~L~~ 75 (339)
T cd06603 21 KDQEDVKEVDAGFDEH--DIPYDVIWLDIEHTDG-----------------KRYFTWDKKKFPD------PEKMQEKLAS 75 (339)
T ss_pred CCHHHHHHHHHHHHHc--CCCceEEEEChHHhCC-----------------CCceEeCcccCCC------HHHHHHHHHH
Confidence 4799999999977542 3347899999998632 4678889999997 9999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHH
Q 006666 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (636)
Q Consensus 130 kGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~f 209 (636)
+|+|+-+|+.|++.. .+++++.... ...++.+++.......-.+.++.-..+|.++|+|++|+.+.++.+
T Consensus 76 ~G~k~~~~~~P~v~~---~~~~~~y~e~-------~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 76 KGRKLVTIVDPHIKR---DDGYYVYKEA-------KDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred CCCEEEEEecCceec---CCCCHHHHHH-------HHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 999999999998742 1122221110 011233333322111111223333469999999999998777655
Q ss_pred H---hhCCCEEEecCCCCC---------C--------CChHH----H-----HHHHHHHHhc----CCCeEEEcCCCCCC
Q 006666 210 A---EWGVDFVKHDCVFGD---------D--------LDINE----I-----SFVSEVLKEL----DRPIVYSLSPGTGV 256 (636)
Q Consensus 210 a---~WGVDylK~D~~~~~---------~--------~~~~~----~-----~am~~Al~~~----GrpI~lSls~g~~~ 256 (636)
. +-|++++++|..... + ....+ | ++..+++++. .||++++=|-..
T Consensus 146 ~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~-- 223 (339)
T cd06603 146 KYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFA-- 223 (339)
T ss_pred hhcccCCCceEEeccCCccccCCCCCcCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccc--
Confidence 4 469999999964211 0 01111 2 3455556533 478888866311
Q ss_pred ChhhhhhhccccceEEecCCCcCchHHHHHHHHhh
Q 006666 257 TPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (636)
Q Consensus 257 ~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (636)
..++|+-.| ++|...+|+.+..++...
T Consensus 224 ------G~qry~~~W--~GD~~s~W~~L~~~i~~~ 250 (339)
T cd06603 224 ------GSQRYAAIW--TGDNTATWEHLKISIPML 250 (339)
T ss_pred ------cccceeeee--CCCccCCHHHHHHHHHHH
Confidence 113454443 689999999988776543
No 31
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2.2e-08 Score=117.51 Aligned_cols=210 Identities=23% Similarity=0.350 Sum_probs=141.7
Q ss_pred CCCCCCc---eEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEeccc-ccccccCCccccCCCcccccCCCCccc
Q 006666 31 VRASSPP---RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYL-WYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (636)
Q Consensus 31 ~~a~tPP---mGWNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdG-W~~~~~~g~~~~~~~~~~~D~~G~l~p 106 (636)
|-++.|| +| +.|-+....-+|+++++.++.+.+. +.-++.|.+|.. |. |.++.+..
T Consensus 256 Gkp~l~P~Wa~G-~~~~~~~~~~~e~~v~~~i~~~~~~--~IP~d~~~lD~~~~~-----------------~~~~~F~w 315 (772)
T COG1501 256 GKPPLPPKWALG-WLWTSRYTYYDEDEVLEFIDEMRER--DIPLDVFVLDIDFWM-----------------DNWGDFTW 315 (772)
T ss_pred CCCCCCCceecC-CCceeccccccHHHHHHHHhhcccc--cCcceEEEEeehhhh-----------------ccccceEE
Confidence 5566667 57 2333344456799999999987653 345799999985 64 35688999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhccccc-ccccccC
Q 006666 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKE-RACAWMQ 185 (636)
Q Consensus 107 d~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~-~~c~~~~ 185 (636)
|+.+||+ -|.|.+++|++|+|+=+|+.|.+.. .+++.... ...+|.+++..... ..+.|.
T Consensus 316 d~~~FP~------pk~mi~~l~~~Gikl~~~i~P~i~~-----d~~~~~e~-------~~~Gy~~k~~~g~~~~~~~w~- 376 (772)
T COG1501 316 DPDRFPD------PKQMIAELHEKGIKLIVIINPYIKQ-----DSPLFKEA-------IEKGYFVKDPDGEIYQADFWP- 376 (772)
T ss_pred CcccCCC------HHHHHHHHHhcCceEEEEecccccc-----CCchHHHH-------HHCCeEEECCCCCEeeecccC-
Confidence 9999997 8999999999999999999997742 12221111 01234455442111 122232
Q ss_pred CCceeecCCchHHHHHHH-HHHHHHHhhCCCEEEecCCCCC---------CCChHH---------HHHHHHHHHhc---C
Q 006666 186 HGFMSVNTKLGAGRAFLR-SLYQQYAEWGVDFVKHDCVFGD---------DLDINE---------ISFVSEVLKEL---D 243 (636)
Q Consensus 186 ~~~~~lD~t~p~aq~y~~-s~~~~fa~WGVDylK~D~~~~~---------~~~~~~---------~~am~~Al~~~---G 243 (636)
+.-..+|+++|++++|+. ...+.+.+-|||.++.|+.-.. ..+.++ .++..+++++. .
T Consensus 377 ~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~ 456 (772)
T COG1501 377 GNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNE 456 (772)
T ss_pred CcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCC
Confidence 222468999999999998 4557799999999999986321 112222 25677778776 4
Q ss_pred CCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHHHHH
Q 006666 244 RPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (636)
Q Consensus 244 rpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~ 289 (636)
||++||=|-.. ..+.++-+| ++|+...|++++.++-
T Consensus 457 r~~~lsRsg~a--------G~Q~~~~~W--sGD~~s~wd~l~~si~ 492 (772)
T COG1501 457 RPFILSRSGYA--------GSQRYAAHW--SGDNRSSWDSLRESIP 492 (772)
T ss_pred ceEEEEecccc--------cceecccee--CCccccchHHHHhhHH
Confidence 89999876311 112456677 5999999999887654
No 32
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.88 E-value=1.2e-07 Score=112.81 Aligned_cols=211 Identities=15% Similarity=0.163 Sum_probs=133.1
Q ss_pred CCCCCCce---Ee--cCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcc
Q 006666 31 VRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (636)
Q Consensus 31 ~~a~tPPm---GW--NSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~ 105 (636)
|.++.||. |+ |-|. --|++++++.++.+.+. ..-++.|.+|..|+. .++.++
T Consensus 178 Grp~mpP~WALGy~qSR~~----Y~sq~eV~eva~~fre~--~IP~DvIwlDidYm~-----------------g~~~FT 234 (978)
T PLN02763 178 GTVFMPPKWALGYQQCRWS----YESAKRVAEIARTFREK--KIPCDVVWMDIDYMD-----------------GFRCFT 234 (978)
T ss_pred CCCCCCchHHhheeeccCC----CCCHHHHHHHHHHHHHc--CCCceEEEEehhhhc-----------------CCCcee
Confidence 66777884 32 2232 14789999999977542 344789999988863 345789
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccC
Q 006666 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ 185 (636)
Q Consensus 106 pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~ 185 (636)
.|+++||+ .+.|++++|++|+|.=.++.|++... ++.++..+.. ..++..++.......-.+.|
T Consensus 235 wD~~rFPd------P~~mv~~Lh~~G~kvv~iidPgI~~d---~gY~~y~eg~-------~~~~fvk~~~G~~y~G~vWp 298 (978)
T PLN02763 235 FDKERFPD------PKGLADDLHSIGFKAIWMLDPGIKAE---EGYFVYDSGC-------ENDVWIQTADGKPFVGEVWP 298 (978)
T ss_pred ECcccCCC------HHHHHHHHHHCCCEEEEEEcCCCccC---CCCHHHHhHh-------hcCeeEECCCCCeeEeeecC
Confidence 99999997 99999999999999977789988531 1221111100 00111111111111111224
Q ss_pred CCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCC------------C-----------ChHH----H-----H
Q 006666 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD------------L-----------DINE----I-----S 233 (636)
Q Consensus 186 ~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~------------~-----------~~~~----~-----~ 233 (636)
+....+|.++|++++|.....+.+.+.|||+++.|..-... . ...+ | +
T Consensus 299 G~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~~~gG~~~h~~~HNlYgll~ak 378 (978)
T PLN02763 299 GPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDEELGGVQNHSHYHNVYGMLMAR 378 (978)
T ss_pred CCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCcccCCccCHHHHhhhhHHHHHH
Confidence 43345899999999999999999999999999999742100 0 0111 1 2
Q ss_pred HHHHHHHh---cCCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHHHHHh
Q 006666 234 FVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNV 290 (636)
Q Consensus 234 am~~Al~~---~GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~ 290 (636)
+..+++++ -.||++++=|-.. ..++|+-.| ++|...+|+.+..++..
T Consensus 379 atyEgl~~~~~~kRPFilTRSgfa--------GsQRYaa~W--tGDn~SsWe~L~~sI~~ 428 (978)
T PLN02763 379 STYEGMLLANKNKRPFVLTRAGFI--------GSQRYAATW--TGDNLSNWEHLHMSIPM 428 (978)
T ss_pred HHHHHHHHhCCCCCcEEEEccccC--------cCCCCceEE--CCCccCCHHHHHHHHHH
Confidence 33445543 2489998866311 113455555 58999999998776543
No 33
>PRK10426 alpha-glucosidase; Provisional
Probab=98.75 E-value=2.3e-07 Score=107.44 Aligned_cols=216 Identities=13% Similarity=0.135 Sum_probs=129.4
Q ss_pred CCCCCCceEecC---cccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccC
Q 006666 31 VRASSPPRGWNS---YDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD 107 (636)
Q Consensus 31 ~~a~tPPmGWNS---W~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd 107 (636)
|.++.||. |.= |-.+. -++++|++.++-+.+. ..-.+.|.|| .|+..... +.| ...++.++.|
T Consensus 199 Gr~p~~P~-Wal~G~~~g~~--~~~~~v~~v~~~~r~~--~IP~d~i~ld-dw~~~~~~-----~~g---~~~~~~~~~d 264 (635)
T PRK10426 199 GRQPELPD-WAYDGVTLGIQ--GGTEVVQKKLDTMRNA--GVKVNGIWAQ-DWSGIRMT-----SFG---KRLMWNWKWD 264 (635)
T ss_pred CCCCCCCh-hhccCcccccc--CCHHHHHHHHHHHHHc--CCCeeEEEEe-cccccccc-----ccc---ccccccceEC
Confidence 56667775 432 22222 2577888888866442 2236788898 49743110 000 1123467889
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCccccc-CcccchhhcccccccccccCC
Q 006666 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQH 186 (636)
Q Consensus 108 ~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~~~~~c~~~~~ 186 (636)
+++||+ .+.+++.||++|+|+=+|+.|++.. ++++ |++- ..++.+++.......-.+.+.
T Consensus 265 ~~~FPd------p~~mi~~L~~~G~k~v~~i~P~v~~-----~~~~--------y~e~~~~gy~vk~~~g~~~~~~~~~~ 325 (635)
T PRK10426 265 SERYPQ------LDSRIKQLNEEGIQFLGYINPYLAS-----DGDL--------CEEAAEKGYLAKDADGGDYLVEFGEF 325 (635)
T ss_pred hhhCCC------HHHHHHHHHHCCCEEEEEEcCccCC-----CCHH--------HHHHHHCCcEEECCCCCEEEeEecCC
Confidence 999996 9999999999999999999998742 2322 2210 112333333221111111122
Q ss_pred CceeecCCchHHHHHHHHHH-HHHHhhCCCEEEecCCCC--------CCCChHH----H-----HHHHHHHHhc---CCC
Q 006666 187 GFMSVNTKLGAGRAFLRSLY-QQYAEWGVDFVKHDCVFG--------DDLDINE----I-----SFVSEVLKEL---DRP 245 (636)
Q Consensus 187 ~~~~lD~t~p~aq~y~~s~~-~~fa~WGVDylK~D~~~~--------~~~~~~~----~-----~am~~Al~~~---Grp 245 (636)
.-..+|.++|+|++|+.+.+ +.+.+.|||.+|.|+... ...+..+ | ++..+++++. +||
T Consensus 326 ~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~ 405 (635)
T PRK10426 326 YAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEI 405 (635)
T ss_pred CceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 22469999999999997766 568899999999997421 1112221 2 3445555544 588
Q ss_pred eEEEcCCCCCCChhhhhhhccccc-eEEecCCCcCchH---HHHHHHH
Q 006666 246 IVYSLSPGTGVTPAMAKEVSGLVN-MYRITGDDWDTWG---DVAAHFN 289 (636)
Q Consensus 246 I~lSls~g~~~~~~~a~~~~~~an-~wRis~Di~d~W~---~i~~~~~ 289 (636)
++++=|-.. -.++|+. .| ++|...+|+ .+..++.
T Consensus 406 f~ltRsg~a--------GsQry~~~~W--sGD~~ssW~~~d~L~~~I~ 443 (635)
T PRK10426 406 LFFMRAGYT--------GSQKYSTLFW--AGDQNVDWSLDDGLASVVP 443 (635)
T ss_pred EEEEccccC--------CcCCcccccc--CCCCCCcCcChhHHHHHHH
Confidence 888866311 1135554 46 689999996 5665544
No 34
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=98.39 E-value=3.2e-08 Score=105.11 Aligned_cols=272 Identities=22% Similarity=0.233 Sum_probs=185.0
Q ss_pred HHhhCCCEEEecCCCCCCCChHH--HHHHHHHHHhcCCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHHHHH
Q 006666 209 YAEWGVDFVKHDCVFGDDLDINE--ISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA 286 (636)
Q Consensus 209 fa~WGVDylK~D~~~~~~~~~~~--~~am~~Al~~~GrpI~lSls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~ 286 (636)
+.+|++++.++||+.++..-.+| |..|.+++.+.|- ..+.+-||..| |-|..+.+
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~---------------------~~vGY~yi~iD--DCW~e~~R 93 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGL---------------------ADVGYEYINID--DCWSEVTR 93 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHHHhHH---------------------HhcCcEEEech--hhhhhhcc
Confidence 89999999999998775544444 6788888876641 12467788877 89988877
Q ss_pred HHHhhhhhhhhhhhcccCCCCCccCCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccCCCCCCCH
Q 006666 287 HFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDE 366 (636)
Q Consensus 287 ~~~~~~~w~~~~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~~~lT~~E~rT~~slWa~~~SPLiiG~DL~~l~~ 366 (636)
.++. +--+....++.-......|.+-++|.+|.+.|.| ++++ ++..+ +.+..|..+.++...|.|+.++|.
T Consensus 94 d~~g-rLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G-----~~TC-~g~PG--S~~~e~~DA~tFA~WgvDylKlD~ 164 (414)
T KOG2366|consen 94 DSDG-RLVADPSRFPSGIKALADYVHSKGLKLGIYSDAG-----NFTC-AGYPG--SLGHEESDAKTFADWGVDYLKLDG 164 (414)
T ss_pred CCcc-ccccChhhcccchhhhhhchhhcCCceeeeeccC-----chhh-ccCCc--ccchhhhhhhhhHhhCCcEEeccc
Confidence 6654 2222111111000001358999999999987754 3345 66666 889999999999999999999998
Q ss_pred HHHhhccChhhhhhccCCCCCCCccccccccCCCcccccCCCCCcccccccccccccccc-----CCCCCCccccccccc
Q 006666 367 TTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLGLTSC-----KDPKANSWSIQAHDQ 441 (636)
Q Consensus 367 ~~l~lLtN~EvIaInQd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~w~~~~~~~ 441 (636)
-.-.++++++...+.-..+++.+...+..-..- ..++. .....+.....=+.| .+...+-|.+ ...
T Consensus 165 C~~~~~~~~~~Yp~ms~aLN~tGrpi~ySlC~W-~~~~~------~~~~~pny~~i~~~~N~WR~~dDI~dtW~S--v~~ 235 (414)
T KOG2366|consen 165 CFNNLITMPEGYPIMSRALNNTGRPIFYSLCSW-PAYHP------GLPHHPNYKNISTICNSWRTTDDIQDTWKS--VDS 235 (414)
T ss_pred cccccccccccchhHHHHHhccCCceEEEeccC-ccccc------CccCCCcchhhhhhhccccchhhhhhHHHH--HHH
Confidence 888999999999999998887775544431100 00000 000011111111122 3455566642 223
Q ss_pred hhhhhhhcCCCCCCCCCceecccccccccCCcchhhhccccceEEEeecCCccccccCCcccccchhhhhcccccccccc
Q 006666 442 ELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRD 521 (636)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~c~~~ 521 (636)
-...+|||-++-.+...| |.-....-|.++.-..+.|+|++|+|+++-.--. |-.|--.+.++.|.+....++|.+.
T Consensus 236 I~d~~~~nqd~~~~~agP-g~WNDpDmL~iGN~G~s~e~y~~qf~lWai~kAP--Llms~Dlr~is~~~~~il~nk~~Ia 312 (414)
T KOG2366|consen 236 IIDYICWNQDRIAPLAGP-GGWNDPDMLEIGNGGMSYEEYKGQFALWAILKAP--LLMSNDLRLISKQTKEILQNKEVIA 312 (414)
T ss_pred HHHHHhhhhhhhccccCC-CCCCChhHhhcCCCCccHHHHHHHHHHHHHhhch--hhhccchhhcCHHHHHHhcChhhee
Confidence 334567776666666777 7777777888998889999999999998763322 6666678888999999999999999
Q ss_pred ccc
Q 006666 522 ANQ 524 (636)
Q Consensus 522 ~~q 524 (636)
.||
T Consensus 313 iNQ 315 (414)
T KOG2366|consen 313 INQ 315 (414)
T ss_pred ccC
Confidence 999
No 35
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=98.13 E-value=1.6e-05 Score=82.95 Aligned_cols=130 Identities=19% Similarity=0.339 Sum_probs=76.3
Q ss_pred cccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHH
Q 006666 47 CWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (636)
Q Consensus 47 ~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~ 126 (636)
...+|.+..++-+|+- +++|++|+.||+||....... ...-..+. |. .-|+.|++|
T Consensus 26 ~~g~~t~~~k~yIDfA----a~~G~eYvlvD~GW~~~~~~~------------~~d~~~~~----~~----~dl~elv~Y 81 (273)
T PF10566_consen 26 KHGATTETQKRYIDFA----AEMGIEYVLVDAGWYGWEKDD------------DFDFTKPI----PD----FDLPELVDY 81 (273)
T ss_dssp -BSSSHHHHHHHHHHH----HHTT-SEEEEBTTCCGS--TT------------T--TT-B-----TT------HHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----HHcCCCEEEeccccccccccc------------cccccccC----Cc----cCHHHHHHH
Confidence 3468999999999974 457999999999998532100 01111111 21 259999999
Q ss_pred HHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHH
Q 006666 127 VHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLY 206 (636)
Q Consensus 127 iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~ 206 (636)
-++||.++=||..--. .+...+ +| ++ ++..+
T Consensus 82 a~~KgVgi~lw~~~~~-------------------------~~~~~~-----------------~~------~~-~~~~f 112 (273)
T PF10566_consen 82 AKEKGVGIWLWYHSET-------------------------GGNVAN-----------------LE------KQ-LDEAF 112 (273)
T ss_dssp HHHTT-EEEEEEECCH-------------------------TTBHHH-----------------HH------CC-HHHHH
T ss_pred HHHcCCCEEEEEeCCc-------------------------chhhHh-----------------HH------HH-HHHHH
Confidence 9999999989874310 000000 11 11 36678
Q ss_pred HHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhc-CCCeEEEcC
Q 006666 207 QQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKEL-DRPIVYSLS 251 (636)
Q Consensus 207 ~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~-GrpI~lSls 251 (636)
++|++|||.-||+||+..+ +.+.++.+.++++++ .+.+.+..-
T Consensus 113 ~~~~~~Gv~GvKidF~~~d--~Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 113 KLYAKWGVKGVKIDFMDRD--DQEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHCTEEEEEEE--SST--SHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHcCCCEEeeCcCCCC--CHHHHHHHHHHHHHHHHcCcEEEec
Confidence 9999999999999998652 233345555555433 345666653
No 36
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.00037 Score=81.32 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=101.0
Q ss_pred ceEecCccccc--ccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCC
Q 006666 37 PRGWNSYDSFC--WTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSS 114 (636)
Q Consensus 37 PmGWNSW~~~~--~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~ 114 (636)
|-.|+-|..+. .-.+.+++++.++.+.+ ...+++.+.+|+-|+ |.+++++.|+.+||.
T Consensus 293 ~pYWslGf~~~RwgY~nls~~~dvv~~~~~--agiPld~~~~DiDyM-----------------d~ykDFTvd~~~fp~- 352 (805)
T KOG1065|consen 293 PPYWSLGFQLCRWGYKNLSVVRDVVENYRA--AGIPLDVIVIDIDYM-----------------DGYKDFTVDKVWFPD- 352 (805)
T ss_pred CchhhccceecccccccHHHHHHHHHHHHH--cCCCcceeeeehhhh-----------------hcccceeeccccCcc-
Confidence 33499887654 35788899998886532 235678999998885 567899999999995
Q ss_pred CCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCccccc-Ccccchhhccccccccc-ccCCCceeec
Q 006666 115 RGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACA-WMQHGFMSVN 192 (636)
Q Consensus 115 ~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~-g~~~~~~Di~~~~~~c~-~~~~~~~~lD 192 (636)
|+.+++.||+.|+|.=+..+|+|.+-.- .+ .|++. ..+...++-....+.-+ -.|+.-+..|
T Consensus 353 -----~~~fv~~Lh~~G~kyvliidP~is~~~~------y~-----~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpD 416 (805)
T KOG1065|consen 353 -----LKDFVDDLHARGFKYVLIIDPFISTNSS------YG-----PYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPD 416 (805)
T ss_pred -----hHHHHHHHHhCCCeEEEEeCCccccCcc------ch-----hhhhhhhhceeeecccCchhhhcccCCCcccccc
Confidence 9999999999999999999999964211 00 11110 00011111000010011 1233445689
Q ss_pred CCchHHHHHHHHHHHHHH-hhCCCEEEecC
Q 006666 193 TKLGAGRAFLRSLYQQYA-EWGVDFVKHDC 221 (636)
Q Consensus 193 ~t~p~aq~y~~s~~~~fa-~WGVDylK~D~ 221 (636)
.++|.+++|...-++.|. +-+||.+++|.
T Consensus 417 ftnp~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 417 FTNPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred cCCchHHHHHHHHHHhhcccCCccceEEEC
Confidence 999999999866666775 69999999996
No 37
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.99 E-value=0.077 Score=55.24 Aligned_cols=104 Identities=22% Similarity=0.427 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHH
Q 006666 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAG 198 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~a 198 (636)
-|+.++|+++++|++.|+|+..+. +||
T Consensus 76 ~l~~~~~~~~~~g~~~glwt~~~l-----------------------------~~~------------------------ 102 (261)
T cd06596 76 NLKEVVDYLHANGVETGLWTQSGL-----------------------------RDI------------------------ 102 (261)
T ss_pred HHHHHHHHHHHcCCccccccccch-----------------------------hhh------------------------
Confidence 499999999999999999974321 111
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCC-CCCCC--hHHHHHHHHHHHhc--CCCeEEEcCCCCCCChhhhhhhccccceEEe
Q 006666 199 RAFLRSLYQQYAEWGVDFVKHDCVF-GDDLD--INEISFVSEVLKEL--DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRI 273 (636)
Q Consensus 199 q~y~~s~~~~fa~WGVDylK~D~~~-~~~~~--~~~~~am~~Al~~~--GrpI~lSls~g~~~~~~~a~~~~~~an~wRi 273 (636)
.+....=|+.++|+|--. +..+. ....++..+++++. .||++++-|-... .++|+-.|
T Consensus 103 -------~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aG--------sQRy~~~W-- 165 (261)
T cd06596 103 -------AKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAG--------TQRYAGIW-- 165 (261)
T ss_pred -------hhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCccc--------cCCCCCcc--
Confidence 234455688899999421 22222 23334555555543 4899999884111 12455455
Q ss_pred cCCCcCchHHHHHHHHhhh
Q 006666 274 TGDDWDTWGDVAAHFNVSR 292 (636)
Q Consensus 274 s~Di~d~W~~i~~~~~~~~ 292 (636)
++|...+|+.++.++-...
T Consensus 166 sGD~~stWe~Lr~sI~~~L 184 (261)
T cd06596 166 TGDQSGSWEYIRFHIPTYI 184 (261)
T ss_pred CCCCcCcHHHHHHHHHHHH
Confidence 5899999999987765443
No 38
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=94.44 E-value=0.87 Score=48.83 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCccc-ccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006666 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDV-IDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (636)
Q Consensus 51 tE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~-~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHs 129 (636)
+++++.+..+. |+.+|++.|.++=-+... ..++|.-... .--.|....+| -| +=|+.+++..|+
T Consensus 17 ~~~~~~~~l~~----l~~~~~N~V~~qVr~~gd----a~Y~S~~~p~s~~~~g~~~~~p-g~------DpL~~~I~eaHk 81 (311)
T PF02638_consen 17 SKEQIDEMLDD----LKSAGFNAVFVQVRPRGD----ALYPSDIEPWSGYLTGKQGKDP-GF------DPLEFMIEEAHK 81 (311)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEEEEEeCcE----EEecccccccccccCCCCCCCC-Cc------cHHHHHHHHHHH
Confidence 56666666654 567888888887433211 1122210000 00011111111 12 138999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccc--cCCCceeecCCchHHHHHHHHHHH
Q 006666 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAW--MQHGFMSVNTKLGAGRAFLRSLYQ 207 (636)
Q Consensus 130 kGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~--~~~~~~~lD~t~p~aq~y~~s~~~ 207 (636)
+||++=-|...+.... ...++..+ +|.|...+. +...+.. ..++++.+||.+|++|+|+.++++
T Consensus 82 rGlevHAW~~~~~~~~---~~~~~~~~---------~p~~~~~~~--~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~ 147 (311)
T PF02638_consen 82 RGLEVHAWFRVGFNAP---DVSHILKK---------HPEWFAVNH--PGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVK 147 (311)
T ss_pred cCCEEEEEEEeecCCC---chhhhhhc---------CchhheecC--CCceeecccCCCCceEECCCCHHHHHHHHHHHH
Confidence 9999877774333211 11112211 123322111 1111111 124556899999999999977776
Q ss_pred H-HHhhCCCEEEecCC-CC---CCC------------------ChH----------H----HHHHHHHHHhcCCCeEEEc
Q 006666 208 Q-YAEWGVDFVKHDCV-FG---DDL------------------DIN----------E----ISFVSEVLKELDRPIVYSL 250 (636)
Q Consensus 208 ~-fa~WGVDylK~D~~-~~---~~~------------------~~~----------~----~~am~~Al~~~GrpI~lSl 250 (636)
- .....||-|-+|.. +. ..+ .+. . ++.+++++++....+.|++
T Consensus 148 Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~si 227 (311)
T PF02638_consen 148 EIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSI 227 (311)
T ss_pred HHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 5 46799999999953 21 000 011 1 2457888888888899999
Q ss_pred CC
Q 006666 251 SP 252 (636)
Q Consensus 251 s~ 252 (636)
||
T Consensus 228 sp 229 (311)
T PF02638_consen 228 SP 229 (311)
T ss_pred Ee
Confidence 97
No 39
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.28 E-value=0.6 Score=54.63 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEe-cccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006666 51 SEEEFLQSAEIISQRLRPHGYEYVVV-DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (636)
Q Consensus 51 tE~~v~~~Ad~ma~gL~~~GY~yi~I-DdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHs 129 (636)
|...+.+. +...|+++|++.|.| --..+... ..-|+ |..+...++ .+|-+ ...||.|++.+|+
T Consensus 154 ~~~~i~~~---l~dyl~~LGvt~i~L~Pi~e~~~~------~~wGY---~~~~y~~~~-~~~Gt---~~dlk~lV~~~H~ 217 (613)
T TIGR01515 154 SYRELADQ---LIPYVKELGFTHIELLPVAEHPFD------GSWGY---QVTGYYAPT-SRFGT---PDDFMYFVDACHQ 217 (613)
T ss_pred CHHHHHHH---HHHHHHHcCCCEEEECCcccCCCC------CCCCC---CcccCcccc-cccCC---HHHHHHHHHHHHH
Confidence 34444444 333478899999988 21111100 00011 223345555 35542 2369999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHH
Q 006666 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (636)
Q Consensus 130 kGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~f 209 (636)
+||+.=|-.-+.- .+... ..+. .|.. .+.|...+... .....|. -..+|..+|++++|+-+.++.+
T Consensus 218 ~Gi~VilD~V~NH--~~~~~-~~~~------~~~~-~~~y~~~~~~~-~~~~~w~---~~~~~~~~~~Vr~~l~~~~~~W 283 (613)
T TIGR01515 218 AGIGVILDWVPGH--FPKDD-HGLA------EFDG-TPLYEHKDPRD-GEHWDWG---TLIFDYGRPEVRNFLVANALYW 283 (613)
T ss_pred CCCEEEEEecccC--cCCcc-chhh------ccCC-CcceeccCCcc-CcCCCCC---CceecCCCHHHHHHHHHHHHHH
Confidence 9999877665432 11100 0000 0000 00111111100 0001121 1247899999999998888776
Q ss_pred H-hhCCCEEEecCC
Q 006666 210 A-EWGVDFVKHDCV 222 (636)
Q Consensus 210 a-~WGVDylK~D~~ 222 (636)
. +.|||-+++|.+
T Consensus 284 ~~ey~iDG~R~D~v 297 (613)
T TIGR01515 284 AEFYHIDGLRVDAV 297 (613)
T ss_pred HHHhCCcEEEEcCH
Confidence 5 699999999974
No 40
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=93.01 E-value=0.82 Score=49.20 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhccccccccccc-CCCceeecCCchH
Q 006666 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWM-QHGFMSVNTKLGA 197 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~-~~~~~~lD~t~p~ 197 (636)
.++.|++.+|++|+.+=-++.-|-. |++... .|+|..+.... . .|. ..+..++||.+++
T Consensus 62 D~~~l~~~l~e~gIY~IARIv~FkD--------~~la~~--------~pe~av~~~~G---~-~w~d~~~~~WvnP~~~e 121 (316)
T PF13200_consen 62 DLKALVKKLKEHGIYPIARIVVFKD--------PVLAEA--------HPEWAVKTKDG---S-VWRDNEGEAWVNPYSKE 121 (316)
T ss_pred CHHHHHHHHHHCCCEEEEEEEEecC--------hHHhhh--------ChhhEEECCCC---C-cccCCCCCccCCCCCHH
Confidence 5999999999999876555544321 111110 13333311110 0 121 1345689999999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCC
Q 006666 198 GRAFLRSLYQQYAEWGVDFVKHDCV 222 (636)
Q Consensus 198 aq~y~~s~~~~fa~WGVDylK~D~~ 222 (636)
+++|.-.+++..++-|||=|-+|++
T Consensus 122 vw~Y~i~IA~Eaa~~GFdEIqfDYI 146 (316)
T PF13200_consen 122 VWDYNIDIAKEAAKLGFDEIQFDYI 146 (316)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeeee
Confidence 9999999999999999999999986
No 41
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.46 Score=55.24 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=85.8
Q ss_pred CCCCCCce---Ee--cCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcc
Q 006666 31 VRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (636)
Q Consensus 31 ~~a~tPPm---GW--NSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~ 105 (636)
|..+.||+ |+ |-||+ .+|++|+..-.-+.++ +..|+.|-+|.-... .--+.+
T Consensus 349 G~~~LPplFsiGYHQcRWNY----~DE~DV~~Vd~~FDeh--diP~DviWLDIEhtd-----------------gKrYFT 405 (915)
T KOG1066|consen 349 GTTPLPPLFSIGYHQCRWNY----NDEEDVLTVDQGFDEH--DIPYDVIWLDIEHTD-----------------GKRYFT 405 (915)
T ss_pred CCCCCCchhhcchhhccccc----cchhhhhhhhcCcccc--CCccceEEEeeeecC-----------------CceeEe
Confidence 56677874 43 44553 5788888765555554 335789988865432 223688
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccC
Q 006666 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ 185 (636)
Q Consensus 106 pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~ 185 (636)
.|+.+||. =+.+.+.|.+||-|+=.=++|=|..- .+--|-...+ ..++..||....+......|
T Consensus 406 WDk~~FP~------P~~Ml~kLa~kgRklV~IvDPHIKkD---~~Y~v~ke~~-------~~gy~VKd~~G~DyeG~CWP 469 (915)
T KOG1066|consen 406 WDKHKFPN------PKDMLKKLASKGRKLVTIVDPHIKKD---DGYFVHKEAK-------DKGYYVKDRDGSDYEGWCWP 469 (915)
T ss_pred eccccCCC------HHHHHHHHHhcCCceEEEeCcccccC---CCeEEhHHhh-------hCCeEEEecCCCcccccccC
Confidence 99999997 89999999999999988888866321 1110000000 11233444433322111135
Q ss_pred CCceeecCCchHHHHHHHHHHH
Q 006666 186 HGFMSVNTKLGAGRAFLRSLYQ 207 (636)
Q Consensus 186 ~~~~~lD~t~p~aq~y~~s~~~ 207 (636)
++-..+|.-+|.+|+|..+.+.
T Consensus 470 G~S~yiDf~nP~~r~wW~~~fa 491 (915)
T KOG1066|consen 470 GSSSYIDFINPEARKWWKSQFA 491 (915)
T ss_pred CCcccccccCHHHHHHHhhhcc
Confidence 5545699999999999987664
No 42
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=90.83 E-value=1.1 Score=52.28 Aligned_cols=133 Identities=19% Similarity=0.262 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccccCCceEEEe--------cccccccccCCccccCCCcccccCCCCcccCCCCC--CCCCCCCChHHHH
Q 006666 55 FLQSAEIISQRLRPHGYEYVVV--------DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRW--PSSRGGKGFTEVA 124 (636)
Q Consensus 55 v~~~Ad~ma~gL~~~GY~yi~I--------DdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kF--Ps~~~~~Gmk~La 124 (636)
..+.|+.+-.-|+++||+.|-+ |-+|-- |..|..-|. +|| |. +||+|+
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----------------q~~g~yAp~-sryGtPe-----dfk~fV 220 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----------------QGTGYYAPT-SRYGTPE-----DFKALV 220 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----------------Ccceecccc-ccCCCHH-----HHHHHH
Confidence 3344444444578899999987 555532 233444444 566 55 899999
Q ss_pred HHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHH
Q 006666 125 KKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRS 204 (636)
Q Consensus 125 d~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s 204 (636)
|.+|++|+-.=|=+-|+-.. +...-+..-.+..+.+ ..|.- ....-.|.. ..-|..+++++.|+=+
T Consensus 221 D~aH~~GIgViLD~V~~HF~----~d~~~L~~fdg~~~~e------~~~~~-~~~~~~Wg~---~i~~~gr~EVR~Fll~ 286 (628)
T COG0296 221 DAAHQAGIGVILDWVPNHFP----PDGNYLARFDGTFLYE------HEDPR-RGEHTDWGT---AIFNYGRNEVRNFLLA 286 (628)
T ss_pred HHHHHcCCEEEEEecCCcCC----CCcchhhhcCCccccc------cCCcc-cccCCCccc---chhccCcHHHHHHHHH
Confidence 99999999765544443211 1110000000111111 11110 000112322 2234558999999855
Q ss_pred HHHH-HHhhCCCEEEecCCC
Q 006666 205 LYQQ-YAEWGVDFVKHDCVF 223 (636)
Q Consensus 205 ~~~~-fa~WGVDylK~D~~~ 223 (636)
-+.. +.+..||-|++|.+.
T Consensus 287 nal~Wl~~yHiDGlRvDAV~ 306 (628)
T COG0296 287 NALYWLEEYHIDGLRVDAVA 306 (628)
T ss_pred HHHHHHHHhCCcceeeehhh
Confidence 5544 578999999999863
No 43
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=90.57 E-value=7.5 Score=44.08 Aligned_cols=53 Identities=23% Similarity=0.167 Sum_probs=41.3
Q ss_pred eecCCchHHHHHHHHHHHHHHh-hCCCEEEecCCCCCCCChHHHHHHHHHHHhcCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDCVFGDDLDINEISFVSEVLKELDR 244 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~-WGVDylK~D~~~~~~~~~~~~~am~~Al~~~Gr 244 (636)
-||..+|++++|+...++.+.+ .|||-+.+|... .++.+-.+.+.+++++...
T Consensus 202 DLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk--~v~~~f~~~~~~~~~~~~~ 255 (479)
T PRK09441 202 DIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVK--HIDAWFIKEWIEHVREVAG 255 (479)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc--CCCHHHHHHHHHHHHHhcC
Confidence 4788999999999888888876 999999999753 3445555677777776543
No 44
>PLN00196 alpha-amylase; Provisional
Probab=89.47 E-value=4.4 Score=45.47 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=29.0
Q ss_pred eecCCchHHHHHHHHHHHHHH-hhCCCEEEecCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~ 222 (636)
-||.++|++++|+....+.+. +-|||-+.+|..
T Consensus 172 DLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~a 205 (428)
T PLN00196 172 DIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFA 205 (428)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehh
Confidence 488999999999988887775 699999999986
No 45
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.19 E-value=8.1 Score=46.20 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEE
Q 006666 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (636)
Q Consensus 55 v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKf 134 (636)
++..|+.+-..|+++|++.|.|==-..... + .+-| .+..|...|+ .+|.+ ...||.|++.+|++||+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~--~---~~wG---Y~~~~~~a~~-~~~G~---~~dfk~lV~~~H~~Gi~V 335 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPF--G---GSWG---YQPLGLYAPT-ARHGS---PDGFAQFVDACHRAGIGV 335 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCC--C---CCCC---CCCCcCCccC-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 344444444557889999997621111000 0 0001 1233455566 35653 247999999999999998
Q ss_pred EEEeecCccccccCCC-C-cccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHH-Hh
Q 006666 135 GIHVMRGISTQAFNAD-T-PILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AE 211 (636)
Q Consensus 135 GIy~~pGi~~~av~~~-s-pi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~f-a~ 211 (636)
=+=+-+.- ++.... . ..-|+ ..|+. .|... .....|. . ..+|..+|++++|+-+.++.+ .+
T Consensus 336 IlD~V~nH--~~~d~~~l~~fdg~---~~Ye~-------~d~~~-g~~~~W~--~-~~~N~~~peVr~~li~~a~~Wl~e 399 (730)
T PRK12568 336 ILDWVSAH--FPDDAHGLAQFDGA---ALYEH-------ADPRE-GMHRDWN--T-LIYNYGRPEVTAYLLGSALEWIEH 399 (730)
T ss_pred EEEecccc--CCccccccccCCCc---ccccc-------CCCcC-CccCCCC--C-eecccCCHHHHHHHHHHHHHHHHH
Confidence 66444321 111100 0 01111 11211 11000 0011121 1 246999999999997777766 57
Q ss_pred hCCCEEEecCC
Q 006666 212 WGVDFVKHDCV 222 (636)
Q Consensus 212 WGVDylK~D~~ 222 (636)
.|||-+.+|.+
T Consensus 400 yhIDG~R~DAv 410 (730)
T PRK12568 400 YHLDGLRVDAV 410 (730)
T ss_pred hCceEEEEcCH
Confidence 99999999964
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=89.04 E-value=3.6 Score=38.72 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=70.4
Q ss_pred HHhccccCCceEEEeccc--ccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEee
Q 006666 62 ISQRLRPHGYEYVVVDYL--WYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVM 139 (636)
Q Consensus 62 ma~gL~~~GY~yi~IDdG--W~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~ 139 (636)
+.+-|+.+|.+.|+|..+ +-.. |+++ +.|...|.-. .+=|+.+++.+|++|+++=+|.+
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~a-----yYPt-------~~~~~hp~L~-------~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYA-----YYPT-------KVGPRHPGLK-------RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEE-----EccC-------CCCcCCCCCC-------cCHHHHHHHHHHHCCCEEEEEEe
Confidence 444578889999999654 3211 1211 1244444432 12489999999999999999998
Q ss_pred cCccccccCCCCcccccccCCcccccCcccchhhcccccccc-cccCCCceeecCCchHHHHHHHHHHH-HHHhhCCCEE
Q 006666 140 RGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERAC-AWMQHGFMSVNTKLGAGRAFLRSLYQ-QYAEWGVDFV 217 (636)
Q Consensus 140 pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c-~~~~~~~~~lD~t~p~aq~y~~s~~~-~fa~WGVDyl 217 (636)
.++.. ..|++ +|+|..+|.......- .....+++.+.+..|- ++|+-..++ .+..+.+|-|
T Consensus 66 ~~~d~---------------~~~~~-HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y-~e~~~~~i~Ei~~~y~~DGi 128 (132)
T PF14871_consen 66 FSWDE---------------DAAER-HPEWFVRDADGRPMRGERFGYPGWYTCCLNSPY-REFLLEQIREILDRYDVDGI 128 (132)
T ss_pred eecCh---------------HHHHh-CCceeeECCCCCCcCCCCcCCCCceecCCCccH-HHHHHHHHHHHHHcCCCCEE
Confidence 76432 12332 5789888876542100 1111124445555443 456533333 4456888877
Q ss_pred Eec
Q 006666 218 KHD 220 (636)
Q Consensus 218 K~D 220 (636)
=+|
T Consensus 129 F~D 131 (132)
T PF14871_consen 129 FFD 131 (132)
T ss_pred Eec
Confidence 665
No 47
>PRK14706 glycogen branching enzyme; Provisional
Probab=88.93 E-value=5.3 Score=47.11 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEE
Q 006666 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (636)
Q Consensus 55 v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKf 134 (636)
+++.++.+...|+++||+.|.|=---.... ..+-| .+..+...|+ .+|-. ...||.|++.+|++|++.
T Consensus 166 y~~~~~~l~~ylk~lG~t~velmPv~e~~~-----~~~wG---Y~~~~~~~~~-~~~g~---~~~~~~lv~~~H~~gi~V 233 (639)
T PRK14706 166 YRELAHRLGEYVTYMGYTHVELLGVMEHPF-----DGSWG---YQVTGYYAPT-SRLGT---PEDFKYLVNHLHGLGIGV 233 (639)
T ss_pred HHHHHHHHHHHHHHcCCCEEEccchhcCCC-----CCCCC---cCcccccccc-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 344444444568899999987621100000 00001 1223445555 34521 237999999999999998
Q ss_pred EEEeecCccccccCCCC-cccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHH-Hhh
Q 006666 135 GIHVMRGISTQAFNADT-PILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEW 212 (636)
Q Consensus 135 GIy~~pGi~~~av~~~s-pi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~f-a~W 212 (636)
=|=+.+.- .+.-..+. .+-|+ +.|...|.. ......|. . ..+|..+|++++|+-+.++.+ .+.
T Consensus 234 ilD~v~nH-~~~~~~~l~~~dg~----------~~y~~~~~~-~g~~~~w~--~-~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 234 ILDWVPGH-FPTDESGLAHFDGG----------PLYEYADPR-KGYHYDWN--T-YIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred EEEecccc-cCcchhhhhccCCC----------cceeccCCc-CCcCCCCC--C-cccCCCCHHHHHHHHHHHHHHHHHh
Confidence 65433321 11000000 00011 001111100 00011221 1 247889999999997777776 589
Q ss_pred CCCEEEecCC
Q 006666 213 GVDFVKHDCV 222 (636)
Q Consensus 213 GVDylK~D~~ 222 (636)
+||-+.+|.+
T Consensus 299 ~iDG~R~Dav 308 (639)
T PRK14706 299 HVDGLRVDAV 308 (639)
T ss_pred CCCeEEEeee
Confidence 9999999964
No 48
>PLN02784 alpha-amylase
Probab=88.36 E-value=5.6 Score=48.08 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=29.4
Q ss_pred eecCCchHHHHHHHHHHHHHH-hhCCCEEEecCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~ 222 (636)
-||.++|.+|+++...++.+. +.|||-+.+|+.
T Consensus 642 DLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaV 675 (894)
T PLN02784 642 NIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFV 675 (894)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 488999999999988888775 799999999997
No 49
>PRK14705 glycogen branching enzyme; Provisional
Probab=88.20 E-value=5.7 Score=50.01 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=69.5
Q ss_pred HhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCc
Q 006666 63 SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGI 142 (636)
Q Consensus 63 a~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi 142 (636)
-..|+++||+.|.|==--+... + .+-| .+..+...|+ .+|-. -.+||.|++.+|++||+.=|=+-+.-
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~--~---~swG---Y~~~~y~ap~-~ryGt---~~dfk~lVd~~H~~GI~VILD~V~nH 839 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPF--G---GSWG---YQVTSYFAPT-SRFGH---PDEFRFLVDSLHQAGIGVLLDWVPAH 839 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCC--C---CCCC---CCccccCCcC-cccCC---HHHHHHHHHHHHHCCCEEEEEecccc
Confidence 3457889999996611100000 0 0001 1233445555 34532 23799999999999999866554432
Q ss_pred cccccCC-CC-cccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHH-HhhCCCEEEe
Q 006666 143 STQAFNA-DT-PILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWGVDFVKH 219 (636)
Q Consensus 143 ~~~av~~-~s-pi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~f-a~WGVDylK~ 219 (636)
. + ... .. ..-|+ ..|+ ..|.... ..-.|. . ..+|..+|+++.|+-+.+..+ .+.+||-+.+
T Consensus 840 ~-~-~d~~~l~~fdg~---~~y~-------~~d~~~g-~~~~Wg--~-~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~ 903 (1224)
T PRK14705 840 F-P-KDSWALAQFDGQ---PLYE-------HADPALG-EHPDWG--T-LIFDFGRTEVRNFLVANALYWLDEFHIDGLRV 903 (1224)
T ss_pred C-C-cchhhhhhcCCC---cccc-------cCCcccC-CCCCCC--C-ceecCCCHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 1 0 000 00 01111 0111 1111000 001121 1 247899999999997777765 5799999999
Q ss_pred cCC
Q 006666 220 DCV 222 (636)
Q Consensus 220 D~~ 222 (636)
|.+
T Consensus 904 Dav 906 (1224)
T PRK14705 904 DAV 906 (1224)
T ss_pred eeh
Confidence 974
No 50
>PLN02960 alpha-amylase
Probab=88.15 E-value=7.6 Score=47.14 Aligned_cols=131 Identities=14% Similarity=0.175 Sum_probs=68.8
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCcc
Q 006666 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (636)
Q Consensus 64 ~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~ 143 (636)
..|+++||+.|.|=---.... ..+-| .|..+...|+ .+|-+ -..||.|++.+|++||++=|=+-+.-
T Consensus 424 dYLk~LGvt~IeLmPv~e~~~-----~~swG---Y~~~~yfa~~-~~yGt---p~dfk~LVd~aH~~GI~VILDvV~NH- 490 (897)
T PLN02960 424 PHVKKAGYNAIQLIGVQEHKD-----YSSVG---YKVTNFFAVS-SRFGT---PDDFKRLVDEAHGLGLLVFLDIVHSY- 490 (897)
T ss_pred HHHHHcCCCEEEECCcccCCC-----CCCCC---CCcccCCCcc-cccCC---HHHHHHHHHHHHHCCCEEEEEecccc-
Confidence 457899999997721111000 00001 1222344444 23422 13799999999999999866443321
Q ss_pred ccccCC--CCc-ccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHH-HhhCCCEEEe
Q 006666 144 TQAFNA--DTP-ILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWGVDFVKH 219 (636)
Q Consensus 144 ~~av~~--~sp-i~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~f-a~WGVDylK~ 219 (636)
++... +.. .-|+. ..|. ..+- ......|.. ..+|..+|++++|+-+.++.+ .+.+||-+.+
T Consensus 491 -~~~d~~~~L~~FDG~~--~~Yf-------~~~~--~g~~~~WG~---~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~ 555 (897)
T PLN02960 491 -AAADEMVGLSLFDGSN--DCYF-------HSGK--RGHHKRWGT---RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQF 555 (897)
T ss_pred -cCCccccchhhcCCCc--ccee-------ecCC--CCccCCCCC---cccCCCCHHHHHHHHHHHHHHHHHHCCCceee
Confidence 11110 010 11110 0111 1110 000111221 236889999999997778776 5899999999
Q ss_pred cCC
Q 006666 220 DCV 222 (636)
Q Consensus 220 D~~ 222 (636)
|.+
T Consensus 556 DAV 558 (897)
T PLN02960 556 HSL 558 (897)
T ss_pred ccc
Confidence 976
No 51
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=87.95 E-value=4 Score=47.78 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=41.5
Q ss_pred ecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEE
Q 006666 191 VNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVY 248 (636)
Q Consensus 191 lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~l 248 (636)
++..+|++++|+-..++.+. +.|||-+.+|... .++.+-.+.+++++++....+++
T Consensus 289 ~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~--~~~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 289 TASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMG--IHDIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--cCCHHHHHHHHHHHHhhCCCeEE
Confidence 56789999999976777775 6999999999752 23444567788888877655443
No 52
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=87.80 E-value=4.9 Score=44.51 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=20.1
Q ss_pred hHHHHHHHHHcCCEEEEEeec
Q 006666 120 FTEVAKKVHAMGLKFGIHVMR 140 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~~p 140 (636)
++.|++.+|+.|||||+|..+
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCH
Confidence 899999999999999999876
No 53
>PRK12313 glycogen branching enzyme; Provisional
Probab=87.70 E-value=8.5 Score=45.32 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=68.1
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCcc
Q 006666 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (636)
Q Consensus 64 ~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~ 143 (636)
..|+++|++.|.|=--+..... .+.|+ |..+...+++ +|-. ...||.|++.+|++||++=+=..+.
T Consensus 178 ~yl~~LGv~~i~L~Pi~~~~~~-----~~~GY---~~~~y~~i~~-~~Gt---~~d~k~lv~~~H~~Gi~VilD~V~n-- 243 (633)
T PRK12313 178 PYVKEMGYTHVEFMPLMEHPLD-----GSWGY---QLTGYFAPTS-RYGT---PEDFMYLVDALHQNGIGVILDWVPG-- 243 (633)
T ss_pred HHHHHcCCCEEEeCchhcCCCC-----CCCCC---CCcCcCcCCC-CCCC---HHHHHHHHHHHHHCCCEEEEEECCC--
Confidence 4578899999976322211100 00011 2223444552 3432 2379999999999999985543321
Q ss_pred ccccCC-CCc-ccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHHH-hhCCCEEEec
Q 006666 144 TQAFNA-DTP-ILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHD 220 (636)
Q Consensus 144 ~~av~~-~sp-i~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D 220 (636)
.++... ... +-|+ .. |...|-.. .....|. -.-+|..+|++++|+-+.++.+. +.|||-+.+|
T Consensus 244 H~~~~~~~~~~~~~~---~~-------~~~~~~~~-~~~~~w~---~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D 309 (633)
T PRK12313 244 HFPKDDDGLAYFDGT---PL-------YEYQDPRR-AENPDWG---ALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVD 309 (633)
T ss_pred CCCCCcccccccCCC---cc-------eeecCCCC-CcCCCCC---CcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEc
Confidence 111110 000 0010 01 11011000 0000121 12478899999999977788775 5899999999
Q ss_pred CC
Q 006666 221 CV 222 (636)
Q Consensus 221 ~~ 222 (636)
.+
T Consensus 310 ~~ 311 (633)
T PRK12313 310 AV 311 (633)
T ss_pred Ch
Confidence 54
No 54
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=85.40 E-value=14 Score=42.79 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=30.0
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~ 222 (636)
-||.++|++++|+...++.+.+-|||-+.+|..
T Consensus 163 dln~~np~v~~~i~~~~~~W~~~giDGfRlDa~ 195 (543)
T TIGR02403 163 DLNWENPEVREELKDVVNFWRDKGVDGFRLDVI 195 (543)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 388999999999999999998899999999964
No 55
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=83.25 E-value=17 Score=42.17 Aligned_cols=106 Identities=14% Similarity=0.220 Sum_probs=59.2
Q ss_pred CChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCch-
Q 006666 118 KGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLG- 196 (636)
Q Consensus 118 ~Gmk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p- 196 (636)
..||.|++.+|++||+.=|=... ..++ +....+. ...+ |...+ ..+.|.+ .+|..+|
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~--NH~~--~~~~~~~--------~~~~-y~~~~-----~~~~wg~----~~n~~~~~ 217 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVY--NHFG--PEGNYLP--------RYAP-YFTDR-----YSTPWGA----AINFDGPG 217 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcc--CCCC--Ccccccc--------ccCc-cccCC-----CCCCCCC----ccccCCCc
Confidence 46999999999999997543322 1111 1110000 0011 21111 1122222 3678888
Q ss_pred --HHHHHHHHHHHHH-HhhCCCEEEecCCCC-CCCChHH-HHHHHHHHHhcCCC
Q 006666 197 --AGRAFLRSLYQQY-AEWGVDFVKHDCVFG-DDLDINE-ISFVSEVLKELDRP 245 (636)
Q Consensus 197 --~aq~y~~s~~~~f-a~WGVDylK~D~~~~-~~~~~~~-~~am~~Al~~~Grp 245 (636)
.+++|+-..++.+ .+.|||-+.+|.... ......+ .+.+++++++...+
T Consensus 218 ~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 218 SDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAE 271 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCC
Confidence 9999986666666 479999999996421 1111122 36677777766433
No 56
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=82.84 E-value=13 Score=32.08 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=43.2
Q ss_pred CCeeEEEEeCCCCcEEEEEEeCCCCCeEEEEecccccccCCCCCCCCCceeEEeccCCCc--cc--------e----ecc
Q 006666 552 GGIRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKD--YG--------V----LQQ 617 (636)
Q Consensus 552 ~~~~vW~~~~~~g~~~va~fN~~~~~~~it~~l~dl~~~l~g~~~~~~~~~~~dlW~~~~--~g--------~----~~~ 617 (636)
...-++.+...+++..|++||.+++....++.+. ++. ...-++|.+..+ .| . ..+
T Consensus 9 ~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~-~p~----------~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g 77 (95)
T PF02806_consen 9 NNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIG-VPE----------AGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNG 77 (95)
T ss_dssp SSEEEEEETTTETTEEEEEEESSSS-EEEEEEEC-SSS----------SEEEEETTTTTCEEEEESSCSETSEEEEETTS
T ss_pred CCEEEEEEcCCCCCEEEEEEECCCcccceeEEeC-CCC----------cceeeEEeCCCccEECCcccccCceEEEeeCC
Confidence 4566777764333378999999887555554332 110 123344444422 11 1 135
Q ss_pred EEEEEEcCcceEEEEEe
Q 006666 618 TLSTAVGMHGCALFVLN 634 (636)
Q Consensus 618 ~~~~~v~~hg~~l~~l~ 634 (636)
.++.+|||.++.+|+++
T Consensus 78 ~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 78 RITVTLPPYSALVLKLK 94 (95)
T ss_dssp EEEEEESTTEEEEEEEE
T ss_pred EEEEEECCCEEEEEEEc
Confidence 68999999999999986
No 57
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=82.78 E-value=7.4 Score=35.14 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=41.6
Q ss_pred eeEEEEeCC-CCcEEEEEEeCCCCCeEEEEecccccccCCCCCCCCCceeE---EeccC-----CCccc----ee--ccE
Q 006666 554 IRSWIATGR-EGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKC---REVWS-----AKDYG----VL--QQT 618 (636)
Q Consensus 554 ~~vW~~~~~-~g~~~va~fN~~~~~~~it~~l~dl~~~l~g~~~~~~~~~~---~dlW~-----~~~~g----~~--~~~ 618 (636)
.-|-+++-. .+++|||-.|-.+ +++|+++|+-|+.. ..+.+ +|--. ...+. .+ .++
T Consensus 16 yvviARr~~~G~~Wyvg~in~~~-~r~i~l~L~FL~~g--------~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~~~ 86 (103)
T PF14509_consen 16 YVVIARRKRDGDDWYVGGINGED-ARTITLPLSFLDKG--------KKYTATIYTDGPDADYTNPEAYKIETRKVTSGDK 86 (103)
T ss_dssp EEEEEEEETTTTEEEEEEEE-TT--EEEEEEGCCS-TT----------EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT-E
T ss_pred EEEEEEEcCCCCCEEEEEeeCCC-ceEEEEECcccCCC--------CcEEEEEEEeCCcccccCCcceEEEEEEECCCCE
Confidence 344444433 4679999999654 45599999988742 23443 33321 11121 11 368
Q ss_pred EEEEEcCcceEEEEEec
Q 006666 619 LSTAVGMHGCALFVLNC 635 (636)
Q Consensus 619 ~~~~v~~hg~~l~~l~p 635 (636)
++..+.++|-.+++|+|
T Consensus 87 l~i~l~~~GG~vi~~~p 103 (103)
T PF14509_consen 87 LTITLAPGGGFVIRITP 103 (103)
T ss_dssp EEEEE-TT-EEEEEEEE
T ss_pred EEEEEeCCCcEEEEEEC
Confidence 89999999999999987
No 58
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=82.64 E-value=9.1 Score=41.64 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.9
Q ss_pred hHHHHHHHHHcCCEEEEEeecC
Q 006666 120 FTEVAKKVHAMGLKFGIHVMRG 141 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~~pG 141 (636)
+++|++.|++.|||||+|..+.
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHcCCeEEEEecch
Confidence 8999999999999999999885
No 59
>PRK05402 glycogen branching enzyme; Provisional
Probab=82.40 E-value=18 Score=43.39 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=71.3
Q ss_pred HHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEE
Q 006666 56 LQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFG 135 (636)
Q Consensus 56 ~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfG 135 (636)
...++.+...|+++|++.|.|==-.+.... .+.|+ |..+...+++ +|- +...||.|++.+|++||++=
T Consensus 265 ~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~-----~~~GY---~~~~y~ai~~-~~G---t~~dfk~lV~~~H~~Gi~Vi 332 (726)
T PRK05402 265 RELADQLIPYVKEMGFTHVELLPIAEHPFD-----GSWGY---QPTGYYAPTS-RFG---TPDDFRYFVDACHQAGIGVI 332 (726)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCC-----CCCCC---CcccCCCcCc-ccC---CHHHHHHHHHHHHHCCCEEE
Confidence 333443334578999999976221111100 00011 2223444552 342 22479999999999999975
Q ss_pred EEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHHH-hhCC
Q 006666 136 IHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGV 214 (636)
Q Consensus 136 Iy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa-~WGV 214 (636)
|=..+. .++... ..+ ..|... +.|...|... .....| +. ..+|..+|++++|+-+.++.+. +.||
T Consensus 333 lD~V~N--H~~~~~-~~~------~~~~~~-~~y~~~~~~~-~~~~~w--~~-~~~n~~~~~v~~~l~~~~~~W~~e~~i 398 (726)
T PRK05402 333 LDWVPA--HFPKDA-HGL------ARFDGT-ALYEHADPRE-GEHPDW--GT-LIFNYGRNEVRNFLVANALYWLEEFHI 398 (726)
T ss_pred EEECCC--CCCCCc-cch------hccCCC-cceeccCCcC-CccCCC--CC-ccccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 533321 111100 000 001000 0011111100 000111 11 2468899999999987787775 6999
Q ss_pred CEEEecCC
Q 006666 215 DFVKHDCV 222 (636)
Q Consensus 215 DylK~D~~ 222 (636)
|-+.+|.+
T Consensus 399 DG~R~D~v 406 (726)
T PRK05402 399 DGLRVDAV 406 (726)
T ss_pred cEEEECCH
Confidence 99999964
No 60
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=82.36 E-value=11 Score=46.19 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=44.0
Q ss_pred ecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEE
Q 006666 191 VNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYS 249 (636)
Q Consensus 191 lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lS 249 (636)
+++.+|.+++|+-..++.++ +.|||-+.+|-+. ..+.+-...+++++++...+|++-
T Consensus 466 ~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~--~~~~~f~~~~~~~l~~i~pdi~l~ 523 (898)
T TIGR02103 466 TATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMG--HHPKAQMLAAREAIKALTPEIYFY 523 (898)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--hCCHHHHHHHHHHHHHhCCCEEEE
Confidence 46789999999966666664 7999999999763 344566788888998887775554
No 61
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=82.35 E-value=8.9 Score=44.44 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=30.2
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~ 222 (636)
-||..+|++++|+...++.+.+-|||-+.+|..
T Consensus 170 dLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~ 202 (551)
T PRK10933 170 DLNWENPAVRAELKKVCEFWADRGVDGLRLDVV 202 (551)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcch
Confidence 478899999999999999999999999999954
No 62
>PLN02361 alpha-amylase
Probab=82.13 E-value=19 Score=40.12 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=29.6
Q ss_pred eecCCchHHHHHHHHHHHHHHh-hCCCEEEecCCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDCVF 223 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~-WGVDylK~D~~~ 223 (636)
=||.++|.+++++...++.+.+ -|||-+.+|++.
T Consensus 148 DLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk 182 (401)
T PLN02361 148 NIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAK 182 (401)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 3889999999999888887765 999999999864
No 63
>PRK10785 maltodextrin glucosidase; Provisional
Probab=81.62 E-value=23 Score=41.46 Aligned_cols=175 Identities=11% Similarity=0.151 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006666 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (636)
Q Consensus 51 tE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHsk 130 (636)
+-+.|.+..|+ |+++|.+.|-|===..... . .|++.. -....|| +|- +...|+.|++.+|++
T Consensus 177 Dl~GI~~kLdY----L~~LGv~~I~L~Pif~s~s--~-----hgYd~~---Dy~~iDp-~~G---t~~df~~Lv~~aH~r 238 (598)
T PRK10785 177 DLDGISEKLPY----LKKLGVTALYLNPIFTAPS--V-----HKYDTE---DYRHVDP-QLG---GDAALLRLRHATQQR 238 (598)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEeCCcccCCC--C-----CCcCcc---cccccCc-ccC---CHHHHHHHHHHHHHC
Confidence 45667777776 5778988886632222111 0 111111 1233442 343 234699999999999
Q ss_pred CCEEEEEeecCccccccCCCCccccccc---CCcccccC---cccchhhcccccccccccCCCceeecCCchHHHHHHH-
Q 006666 131 GLKFGIHVMRGISTQAFNADTPILDTLK---GGAYEDSG---RQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLR- 203 (636)
Q Consensus 131 GLKfGIy~~pGi~~~av~~~spi~gt~~---g~~y~~~g---~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~- 203 (636)
|||+=|=... ..++. .+|++.... .+.|.... .+|..-+-. ....|-+......-||..+|++++|+-
T Consensus 239 GikVilD~V~--NH~~~--~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~-~~~~~w~g~~~lPdLN~~np~v~~~l~~ 313 (598)
T PRK10785 239 GMRLVLDGVF--NHTGD--SHPWFDRHNRGTGGACHHPDSPWRDWYSFSDD-GRALDWLGYASLPKLDFQSEEVVNEIYR 313 (598)
T ss_pred CCEEEEEECC--CcCCC--CCHHHHHhhccccccccCCCCCcceeeEECCC-CCcCCcCCCCcCccccCCCHHHHHHHHh
Confidence 9997443222 22221 122211000 00111000 012110000 001111111122358899999999985
Q ss_pred ---HHHHHHHh--hCCCEEEecCCCC--C-C---CChHHHHHHHHHHHhcCCCeEE
Q 006666 204 ---SLYQQYAE--WGVDFVKHDCVFG--D-D---LDINEISFVSEVLKELDRPIVY 248 (636)
Q Consensus 204 ---s~~~~fa~--WGVDylK~D~~~~--~-~---~~~~~~~am~~Al~~~GrpI~l 248 (636)
++++.+.+ .|||-+.+|-... . . .+.+-.+.+++++++...++++
T Consensus 314 ~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~l 369 (598)
T PRK10785 314 GEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYV 369 (598)
T ss_pred hhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEE
Confidence 46776654 6999999996421 1 0 0122347788888887665443
No 64
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=79.38 E-value=14 Score=44.53 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=70.2
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCcc
Q 006666 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (636)
Q Consensus 64 ~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~ 143 (636)
..|+++||+.|.|=--+.... ..+-|+ +..+...|+ .+|-+ ...||.|++.+|++||++=|=+.+.-
T Consensus 258 ~ylk~LG~t~I~LmPi~e~~~-----~~~wGY---~~~~~fa~~-~~~Gt---p~dlk~LVd~aH~~GI~VilDvV~nH- 324 (758)
T PLN02447 258 PRIKALGYNAVQLMAIQEHAY-----YGSFGY---HVTNFFAVS-SRSGT---PEDLKYLIDKAHSLGLRVLMDVVHSH- 324 (758)
T ss_pred HHHHHcCCCEEEECCccccCC-----CCCCCc---CcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEecccc-
Confidence 457899999998732221110 000111 222344454 34532 23699999999999999865443321
Q ss_pred ccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHHH-hhCCCEEEecCC
Q 006666 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (636)
Q Consensus 144 ~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~ 222 (636)
++. +.. .|- ..|....+.|...+-. .....|. -..+|..+|+++.|+-+.++.+. +.|||-+++|.+
T Consensus 325 -~~~--~~~-~gl---~~fDg~~~~Yf~~~~~--g~~~~w~---~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 325 -ASK--NTL-DGL---NGFDGTDGSYFHSGPR--GYHWLWD---SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred -ccc--ccc-ccc---cccCCCCccccccCCC--CCcCcCC---CceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 111 000 000 0111000111111100 0001121 12478899999999988888775 699999999964
No 65
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=79.34 E-value=2.4 Score=33.91 Aligned_cols=50 Identities=10% Similarity=0.219 Sum_probs=27.1
Q ss_pred CCCCcEEEEEEeCCCCCeEEEEecccccccCCCCCCCCCceeEEeccCCCccceeccEEEEEEcCcceEEEE
Q 006666 561 GREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALFV 632 (636)
Q Consensus 561 ~~~g~~~va~fN~~~~~~~it~~l~dl~~~l~g~~~~~~~~~~~dlW~~~~~g~~~~~~~~~v~~hg~~l~~ 632 (636)
..++.-|+-++|.++++++|++ . ...+||.+++... ++ .+|+|+|+++++
T Consensus 8 ~~~~~~y~F~~N~s~~~~~v~l--~---------------~~~~dll~g~~~~---~~--~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 8 ENDGGRYLFLLNFSDEPQTVTL--P---------------ESYTDLLTGETVS---GG--LTLPPYGVRVLK 57 (58)
T ss_dssp ---ETTEEEEEE-SSS-EE---------------------TT-EEEES------------SEE-TTEEEEEE
T ss_pred EcCCCEEEEEEECCCCCEEEEc--C---------------CCceecccCccee---eE--EEECCCEEEEEE
Confidence 3455678889999999999885 1 2237999886542 33 799999999986
No 66
>PLN02877 alpha-amylase/limit dextrinase
Probab=78.84 E-value=26 Score=43.25 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=39.1
Q ss_pred cCCchHHHHHHHHHHHHH-HhhCCCEEEecCCCCCCCChHHHHHHHHHHHhc--------CCCeEEEc
Q 006666 192 NTKLGAGRAFLRSLYQQY-AEWGVDFVKHDCVFGDDLDINEISFVSEVLKEL--------DRPIVYSL 250 (636)
Q Consensus 192 D~t~p~aq~y~~s~~~~f-a~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~--------GrpI~lSl 250 (636)
...++.++.|+-..++.+ .+.|||-+.+|-+. .++.+.+..++.+|++. |+.|++--
T Consensus 530 Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg--~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyG 595 (970)
T PLN02877 530 ASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMG--HLMKRTMVRAKDALQSLTLERDGVDGSSIYLYG 595 (970)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccc--cccHHHHHHHHHHHHHHhhhhcccCCCceEEEE
Confidence 467888999985555665 47999999999764 24455566666666665 46665543
No 67
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=78.78 E-value=43 Score=38.66 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=46.9
Q ss_pred eeEEEEeCCCCcEEEEEEeCCCCCeEEEEecccccccCCCCCCCCCceeEEeccCCCccceec-cEEEEEEcCcceEEEE
Q 006666 554 IRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQ-QTLSTAVGMHGCALFV 632 (636)
Q Consensus 554 ~~vW~~~~~~g~~~va~fN~~~~~~~it~~l~dl~~~l~g~~~~~~~~~~~dlW~~~~~g~~~-~~~~~~v~~hg~~l~~ 632 (636)
.-++.+. .+|+.+|+++|.+++++++++.+..+. | . ...||-+++..-.+. +.+.++++|++..+|+
T Consensus 470 v~~f~R~-~~~~~vlVv~N~s~~~~~v~l~~~~~~----~------~-~~~dl~~~~~~~~~~~~~~~~~l~p~~~~~~~ 537 (539)
T TIGR02456 470 VLAFLRE-YEGERVLCVFNFSRNPQAVELDLSEFA----G------R-VPVELIGGAPFPPVGGDGYLLTLGPHGFYWFR 537 (539)
T ss_pred EEEEEEE-cCCcEEEEEEeCCCCCEEeeccccccc----c------C-cceecccCCccccccCCcceEEECCceEEEEE
Confidence 4555554 456789999999999988888776531 1 1 136676665433222 3478999999999998
Q ss_pred E
Q 006666 633 L 633 (636)
Q Consensus 633 l 633 (636)
|
T Consensus 538 ~ 538 (539)
T TIGR02456 538 L 538 (539)
T ss_pred e
Confidence 6
No 68
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=75.77 E-value=17 Score=31.19 Aligned_cols=71 Identities=14% Similarity=0.300 Sum_probs=46.1
Q ss_pred CCCeeEEEEeCCCCcEEEEEEeCCCCCeEEEEecccccccCCCCCCCCCceeEEeccCCCccceeccEEEEEEcCcceEE
Q 006666 551 SGGIRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCAL 630 (636)
Q Consensus 551 ~~~~~vW~~~~~~g~~~va~fN~~~~~~~it~~l~dl~~~l~g~~~~~~~~~~~dlW~~~~~g~~~~~~~~~v~~hg~~l 630 (636)
..+.=|..+. .+++-.+.+.|-++++ .+++++.....+.+ .-+++||-+++.+. .++ +.+|||.++.+
T Consensus 8 ~~gvYvYfR~-~~~~tVmVilN~n~~~--~~ldl~ry~E~l~~------~~~~~diltg~~i~-l~~--~l~l~~~~~~I 75 (78)
T PF10438_consen 8 QDGVYVYFRY-YDGKTVMVILNKNDKE--QTLDLKRYAEVLGG------FTSAKDILTGKTID-LSK--NLTLPPKSVLI 75 (78)
T ss_dssp BTTEEEEEEE-ESSEEEEEEEE-SSS---EEEEGGGGHHHHTT--------EEEETTT--EEE--SS--EEEE-TTEEEE
T ss_pred cCCEEEEEEE-cCCCEEEEEEcCCCCC--eEEcHHHHHHhhCC------CcceEECCCCCEEe-cCC--cEEECCCceEE
Confidence 3455566654 5667888899977766 66677776655554 46899999998764 334 67899999999
Q ss_pred EEE
Q 006666 631 FVL 633 (636)
Q Consensus 631 ~~l 633 (636)
++|
T Consensus 76 Lel 78 (78)
T PF10438_consen 76 LEL 78 (78)
T ss_dssp EEE
T ss_pred EEC
Confidence 886
No 69
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=66.55 E-value=44 Score=42.08 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=40.6
Q ss_pred ecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEE
Q 006666 191 VNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVY 248 (636)
Q Consensus 191 lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~l 248 (636)
++..||.++.|+-..++.+. +.|||-+.+|.+. ..+.+-+..++.++++....+++
T Consensus 612 l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g--~~d~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 612 LGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMG--DHDAASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccc--cCCHHHHHHHHHHHHHhCcCEEE
Confidence 67899999999866666665 7999999999864 24445566777777766544433
No 70
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=66.41 E-value=31 Score=41.20 Aligned_cols=105 Identities=23% Similarity=0.299 Sum_probs=58.3
Q ss_pred CCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccc---cCCCCcccccccCCcccccCcccchhhccc-
Q 006666 101 WGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQA---FNADTPILDTLKGGAYEDSGRQWRAKDIGL- 176 (636)
Q Consensus 101 ~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~pGi~~~a---v~~~spi~gt~~g~~y~~~g~~~~~~Di~~- 176 (636)
.|+...+|. |.. ....||.|++.||+.|+..=+=+ -+-.+.. ..+..+..|..+..-|+.. .| ..
T Consensus 251 ~~~Yss~p~--p~~-~i~EfK~mV~~lHkaGI~VILDV-VfNHTae~~~~g~t~~f~~id~~~Yyr~~------~d-g~~ 319 (697)
T COG1523 251 EGRYASNPE--PAT-RIKEFKDMVKALHKAGIEVILDV-VFNHTAEGNELGPTLSFRGIDPNYYYRLD------PD-GYY 319 (697)
T ss_pred CccccCCCC--cch-HHHHHHHHHHHHHHcCCEEEEEE-eccCcccccCcCcccccccCCcCceEEEC------CC-CCe
Confidence 445555554 431 22369999999999999875532 1112221 1223334444322222211 11 00
Q ss_pred cccc-ccccCCCceeecCCchHHHHHH-HHHHHHHHhhCCCEEEecCC
Q 006666 177 KERA-CAWMQHGFMSVNTKLGAGRAFL-RSLYQQYAEWGVDFVKHDCV 222 (636)
Q Consensus 177 ~~~~-c~~~~~~~~~lD~t~p~aq~y~-~s~~~~fa~WGVDylK~D~~ 222 (636)
...+ |+ + .|..+||-++.++ |++.=...+..||-++.|=+
T Consensus 320 ~N~TGcG-N-----tln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 320 SNGTGCG-N-----TLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred ecCCccC-c-----ccccCChHHHHHHHHHHHHHHHHhCCCceeecch
Confidence 0111 22 1 4889999999998 66544456899999999954
No 71
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=64.37 E-value=19 Score=41.56 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.3
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~ 222 (636)
-+|.++|++++|+...++.+.+-|||.+.+|.+
T Consensus 167 dln~~np~vr~~l~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 167 DLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecH
Confidence 488999999999999999999999999999965
No 72
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=64.28 E-value=32 Score=40.62 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=59.3
Q ss_pred CCCeeEEEEeCCC-CcEEEEEEeCCCCCeEEEEecccccccCCCCCCCCCceeEEeccCCCcccee--ccEEEEEEcCcc
Q 006666 551 SGGIRSWIATGRE-GEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVL--QQTLSTAVGMHG 627 (636)
Q Consensus 551 ~~~~~vW~~~~~~-g~~~va~fN~~~~~~~it~~l~dl~~~l~g~~~~~~~~~~~dlW~~~~~g~~--~~~~~~~v~~hg 627 (636)
..+.-+.+..+++ ++..|.+.|++.+++.+++++..+. + -.++|+..+..++.+ .+.+..++++||
T Consensus 607 ~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~----~-------~~~~dl~~~~~~~~~~~~~~~~i~L~~y~ 675 (688)
T TIGR02455 607 APGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFA----P-------GPVVDIIHESVEGDLTDDCELMINLDPYE 675 (688)
T ss_pred CCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccC----C-------CCceeccCCCccCCcCCCceeEEEecCcc
Confidence 3455666777664 4789999999999999999988763 1 367999999998875 357999999999
Q ss_pred eEEEEEec
Q 006666 628 CALFVLNC 635 (636)
Q Consensus 628 ~~l~~l~p 635 (636)
-.-|++.+
T Consensus 676 ~~wl~~~~ 683 (688)
T TIGR02455 676 ALALRIVN 683 (688)
T ss_pred eEEEEecc
Confidence 99998864
No 73
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=63.20 E-value=40 Score=34.32 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCC----eEEEc
Q 006666 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRP----IVYSL 250 (636)
Q Consensus 201 y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~Grp----I~lSl 250 (636)
.+....+...+-|.||||.-.-.......+..+.|++++.++..| |.+|-
T Consensus 147 ~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sG 200 (236)
T PF01791_consen 147 LIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASG 200 (236)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEES
T ss_pred HHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence 455667888999999999987533333457789999999999888 88774
No 74
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.84 E-value=1.5e+02 Score=33.31 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=71.9
Q ss_pred hHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHH
Q 006666 120 FTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGR 199 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq 199 (636)
++-+++..|++||++==|..++... ...+++.-.+.... ....++|.+.. .-+|. .-.++|+-||++|
T Consensus 117 La~~I~~AHkr~l~v~aWf~~~~~a---~~~s~~~~~~p~~~-~~~~~~~~~~~------~~~~~--~~~~ldPg~Pevq 184 (418)
T COG1649 117 LAFVIAEAHKRGLEVHAWFNPYRMA---PPTSPLTKRHPHWL-TTKRPGWVYVR------HQGWG--KRVWLDPGIPEVQ 184 (418)
T ss_pred HHHHHHHHHhcCCeeeechhhcccC---CCCChhHhhCCCCc-ccCCCCeEEEe------cCCce--eeeEeCCCChHHH
Confidence 7778888899999999999887632 11122111100000 00001111111 00111 2357999999999
Q ss_pred HHHHHHH-HHHHhhCCCEEEecCCC--C--CCC------------------ChH---H---------HHHHHHHHHhcCC
Q 006666 200 AFLRSLY-QQYAEWGVDFVKHDCVF--G--DDL------------------DIN---E---------ISFVSEVLKELDR 244 (636)
Q Consensus 200 ~y~~s~~-~~fa~WGVDylK~D~~~--~--~~~------------------~~~---~---------~~am~~Al~~~Gr 244 (636)
+|+.+++ +....+-||-|-+|.-. . ..+ ++. + +..+..++++..+
T Consensus 185 ~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp 264 (418)
T COG1649 185 DFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKP 264 (418)
T ss_pred HHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCC
Confidence 9996665 66788999999999532 1 111 112 1 2345667888888
Q ss_pred CeEEEcCC
Q 006666 245 PIVYSLSP 252 (636)
Q Consensus 245 pI~lSls~ 252 (636)
++.|++||
T Consensus 265 ~v~~svsp 272 (418)
T COG1649 265 NVKFSVSP 272 (418)
T ss_pred CeEEEEcc
Confidence 99999998
No 75
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=60.36 E-value=35 Score=28.94 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=32.5
Q ss_pred EEEeCCCCcEEEEEEeCCCCCeEEEEecccccccCCCCCCCCCceeEEeccCCCccceeccEEEEEEcCcceEEE
Q 006666 557 WIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALF 631 (636)
Q Consensus 557 W~~~~~~g~~~va~fN~~~~~~~it~~l~dl~~~l~g~~~~~~~~~~~dlW~~~~~g~~~~~~~~~v~~hg~~l~ 631 (636)
......+++..+.+||+++++.++. . . ...+-+|+...- ...+ ..++|||+++++
T Consensus 35 ~~~r~~~~~~l~v~~Nls~~~~~~~------~-~----------~~~~~l~~s~~~-~~~~--~~~L~p~~~~v~ 89 (89)
T PF11941_consen 35 AFRRTGGGERLLVAFNLSDEPVTVP------E-G----------PWGEVLFSSEPA-RAGG--AGTLPPWSVVVL 89 (89)
T ss_dssp EEEEEETTEEEEEEEE-SSS-EEEE------T-S----------CCEEEEEECSCS-SE----EEEE-TTEEEEE
T ss_pred EEEEEcCCceEEEEEecCCCcEEcc------C-C----------CCCeEEEcCCCc-cccc--CceECCCEEEEC
Confidence 3444567789999999999988777 1 1 122445554332 2222 889999999875
No 76
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=57.72 E-value=57 Score=35.68 Aligned_cols=56 Identities=9% Similarity=-0.022 Sum_probs=38.8
Q ss_pred hHHH-HHHHHHHHHHHhhCCCEEEecCCCCCC---CChHHH----HHHHHHHHhcCCCeEEEcC
Q 006666 196 GAGR-AFLRSLYQQYAEWGVDFVKHDCVFGDD---LDINEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 196 p~aq-~y~~s~~~~fa~WGVDylK~D~~~~~~---~~~~~~----~am~~Al~~~GrpI~lSls 251 (636)
|+.+ .|++++++..++.|+|-|=+|+-+... .+.+.| +.+++++++.++...+++.
T Consensus 94 ~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 94 PTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 4444 488999999999999999999865422 223343 4577777776655566654
No 77
>PLN03244 alpha-amylase; Provisional
Probab=53.80 E-value=26 Score=42.25 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHcCCEEEEEeecCccccccC-CCCc-ccccccCCcccccCcccchhhcccccccccccCCCceeecCCch
Q 006666 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFN-ADTP-ILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLG 196 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfGIy~~pGi~~~av~-~~sp-i~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p 196 (636)
.||.|+|.+|++|+++=|=+-+.- .+.-. .+.. .-|+. ..|.. .+-. .....| +. ...|..+|
T Consensus 442 DLK~LVD~aH~~GI~VILDvV~NH-~~~d~~~GL~~fDGt~--~~Yf~-------~~~~--g~~~~W--Gs-~~fnyg~~ 506 (872)
T PLN03244 442 DFKRLVDEAHGLGLLVFLDIVHSY-AAADEMVGLSLFDGSN--DCYFH-------TGKR--GHHKHW--GT-RMFKYGDL 506 (872)
T ss_pred HHHHHHHHHHHCCCEEEEEecCcc-CCCccccchhhcCCCc--cceec-------cCCC--CccCCC--CC-ceecCCCH
Confidence 799999999999998865443321 11000 0111 11111 11211 1100 001112 11 24788999
Q ss_pred HHHHHHHHHHHHH-HhhCCCEEEecCC
Q 006666 197 AGRAFLRSLYQQY-AEWGVDFVKHDCV 222 (636)
Q Consensus 197 ~aq~y~~s~~~~f-a~WGVDylK~D~~ 222 (636)
+++.|+-+.++.+ .+.+||-+.+|.+
T Consensus 507 EVr~FLLsna~yWleEyhIDGFRfDaV 533 (872)
T PLN03244 507 DVLHFLISNLNWWITEYQIDGFQFHSL 533 (872)
T ss_pred HHHHHHHHHHHHHHHHhCcCcceeecc
Confidence 9999997777776 5899999999976
No 78
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=51.70 E-value=37 Score=40.41 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=72.0
Q ss_pred HHHHHHhccccCCceEEEeccccccc-cc-CCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEE
Q 006666 58 SAEIISQRLRPHGYEYVVVDYLWYRR-KV-KGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFG 135 (636)
Q Consensus 58 ~Ad~ma~gL~~~GY~yi~IDdGW~~~-~~-~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHskGLKfG 135 (636)
-++-+-.+||.+||+-|+|=-.-+-. .- ...|....-+..++.+|.... |.| .+-||.|+|.+|++|+..=
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s-~~r------i~efK~lVd~aHs~GI~Vl 328 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPES-PCR------INEFKELVDKAHSLGIEVL 328 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCc-ccc------hHHHHHHHHHHhhCCcEEe
Confidence 33333457899999999986554431 00 011111111222333332221 222 2369999999999999853
Q ss_pred EEeecCccccccCCCC---cccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHH-HHh
Q 006666 136 IHVMRGISTQAFNADT---PILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ-YAE 211 (636)
Q Consensus 136 Iy~~pGi~~~av~~~s---pi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~-fa~ 211 (636)
+=+- -...+.+..- -.-|++. ..|-..++.. .....|..+ ++..||.++.|+-+..+. +.+
T Consensus 329 LDVV--~sHaa~n~~d~l~~fdGid~-~~Yf~~~~r~------~h~~~~~r~------fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 329 LDVV--HSHAAKNSKDGLNMFDGIDN-SVYFHSGPRG------YHNSWCSRL------FNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred hhhh--hhhcccCcCCcchhccCcCC-ceEEEeCCcc------ccccccccc------ccCCCHHHHHHHHHHHHHHHHh
Confidence 3211 0011111111 1223321 1121111100 001123322 567899999999666665 478
Q ss_pred hCCCEEEecCC
Q 006666 212 WGVDFVKHDCV 222 (636)
Q Consensus 212 WGVDylK~D~~ 222 (636)
..||-+..|.+
T Consensus 394 Y~vDGFRFD~~ 404 (757)
T KOG0470|consen 394 YHVDGFRFDLV 404 (757)
T ss_pred eeccceEEcch
Confidence 99999999975
No 79
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=51.47 E-value=28 Score=35.57 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=42.4
Q ss_pred eeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCC
Q 006666 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDR 244 (636)
Q Consensus 189 ~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~Gr 244 (636)
.-+|..+|++++|+...++.+.+-|||-+.+|... .+..+-.+.+..++++...
T Consensus 137 ~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~--~~~~~~~~~~~~~~~~~~~ 190 (316)
T PF00128_consen 137 PDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAK--HIPKEFWKEFRDEVKEEKP 190 (316)
T ss_dssp EEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGG--GSSHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcccccchhhceEeEEEEcccc--ccchhhHHHHhhhhhhhcc
Confidence 46889999999999889999999999999999753 2344556777777776543
No 80
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=50.91 E-value=52 Score=38.37 Aligned_cols=200 Identities=19% Similarity=0.247 Sum_probs=95.1
Q ss_pred hHHHHHHHHHcCCEEEEEeecCccccccCCCCccccccc-CCcccccCcccchhhcccccccccccCCCceeecCCchHH
Q 006666 120 FTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLK-GGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAG 198 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~-g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~a 198 (636)
+|.+++.+|++|||.=.|.+-. +...+....|... .+.|...... ..|.. ...-.|. ...+..|+.+|+=
T Consensus 172 Vk~yI~~ah~~Gmkam~Ynmiy----aa~~~~~~~gv~~eW~ly~d~~~~--~~~~~--~l~~~w~-s~lyl~dP~N~~W 242 (559)
T PF13199_consen 172 VKDYINAAHKYGMKAMAYNMIY----AANNNYEEDGVSPEWGLYKDDSHS--NQDTY--DLPDGWP-SDLYLMDPGNPEW 242 (559)
T ss_dssp HHHHHHHHHHTT-EEEEEEESS----EEETT--S--SS-GGBEEESSSBT--SB-EE--EETT-E---EEEEB-TT-HHH
T ss_pred HHHHHHHHHHcCcceehhHhhh----ccccCcccccCCchhhhhhccCCC--cccee--ecCcccc-cceEEecCCCHHH
Confidence 8999999999999999997753 2222211111111 1222221100 00000 0000121 1257899999999
Q ss_pred HHHH-HHHHHHHHhhCCCEEEecCCCCC---------CC-C-hHHHHHHHHHHHh-c-CCCeEEEcCCCCCCChhhhh--
Q 006666 199 RAFL-RSLYQQYAEWGVDFVKHDCVFGD---------DL-D-INEISFVSEVLKE-L-DRPIVYSLSPGTGVTPAMAK-- 262 (636)
Q Consensus 199 q~y~-~s~~~~fa~WGVDylK~D~~~~~---------~~-~-~~~~~am~~Al~~-~-GrpI~lSls~g~~~~~~~a~-- 262 (636)
|.|+ ++.-+.+...|||-+-+|=++.. .. + .+.|.-+-+++++ . +.++++.-..+.. ....+.
T Consensus 243 Q~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g-~~~~a~~~ 321 (559)
T PF13199_consen 243 QNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYG-IEQIAKTS 321 (559)
T ss_dssp HHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTT-HHHHTT-S
T ss_pred HHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccc-hhhhhccc
Confidence 9998 55567789999999999966421 11 1 2345444444443 3 3556666432110 000110
Q ss_pred -hhccccceEEecCCCcCchHHHHHHHHhhhhhh-hh--hhhcccCCCCCccCCCCCCCCcccCCCCCCCCCCCCCCCCH
Q 006666 263 -EVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFS-AA--NMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNL 338 (636)
Q Consensus 263 -~~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~-~~--~~~~~~g~~~g~wnDpDmL~vG~~~~~~~~~g~~~~~~lT~ 338 (636)
.---|..+| |..++..++++.++..+.++ .. +.+=++ +-. ..-|+
T Consensus 322 ~~d~lY~EvW----~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AA------Ymn---------------------~fn~~ 370 (559)
T PF13199_consen 322 KVDFLYNEVW----DDYDTYGDLKRIIDQNRKYTSSGGKSTVVAA------YMN---------------------YFNTP 370 (559)
T ss_dssp --SSEEEE------SBS-BHHHHHHHHHHHHHHH---S--EEEE----------------------------------HH
T ss_pred ccceeeeecc----cccccHHHHHHHHHHHhhhhccccchhhhHH------Hhh---------------------hccch
Confidence 001367788 45567788888888887773 11 111111 111 12345
Q ss_pred HHHHHHHHHHHHhcCCccccCC
Q 006666 339 DEQRTQMTLWAMAKSPLMFGGD 360 (636)
Q Consensus 339 ~E~rT~~slWa~~~SPLiiG~D 360 (636)
.-.-|-.++.|.-++.|.||++
T Consensus 371 ~vlLtdA~i~A~Gg~HlelGd~ 392 (559)
T PF13199_consen 371 SVLLTDAVIFASGGSHLELGDG 392 (559)
T ss_dssp HHHHHHHHHHHTT-EEE-ETTS
T ss_pred hhHHHHHHHHHCCCceeeecCC
Confidence 6666777888888999999984
No 81
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=50.46 E-value=22 Score=36.54 Aligned_cols=143 Identities=16% Similarity=0.252 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCC-CCCCCCCCCCChHHHHHHH
Q 006666 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DRWPSSRGGKGFTEVAKKV 127 (636)
Q Consensus 49 ~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~-~kFPs~~~~~Gmk~Lad~i 127 (636)
.++++.+.......-+.|.+.||+.|.+=+ +| .+..+..+. --||+ .=+.+++..+
T Consensus 66 ~ls~~~v~~~lq~~i~~le~~G~d~illlC-------TG------------~F~~l~~~~~lleP~----ril~~lV~al 122 (221)
T PF07302_consen 66 VLSKKKVEPRLQACIAQLEAQGYDVILLLC-------TG------------EFPGLTARNPLLEPD----RILPPLVAAL 122 (221)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCEEEEec-------cC------------CCCCCCCCcceeehH----HhHHHHHHHh
Confidence 478888888777555568889999998832 11 122222221 23554 2367777777
Q ss_pred HHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHH
Q 006666 128 HAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (636)
Q Consensus 128 HskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~ 207 (636)
... .+.||-. |-....+. .. ..|..- .. +-.+.+..|-++. .+-+..-++
T Consensus 123 ~~~-~~vGViv-P~~eQ~~~-----~~------------~kW~~l--~~--------~~~~a~asPy~~~-~~~l~~Aa~ 172 (221)
T PF07302_consen 123 VGG-HQVGVIV-PLPEQIAQ-----QA------------EKWQPL--GN--------PVVVAAASPYEGD-EEELAAAAR 172 (221)
T ss_pred cCC-CeEEEEe-cCHHHHHH-----HH------------HHHHhc--CC--------CeEEEEeCCCCCC-HHHHHHHHH
Confidence 765 8999964 32211000 00 011100 00 0001111111111 233444578
Q ss_pred HHHhhCCCEEEecCCCCCCCChHHHHHHHHHHH-hcCCCeEEEcC
Q 006666 208 QYAEWGVDFVKHDCVFGDDLDINEISFVSEVLK-ELDRPIVYSLS 251 (636)
Q Consensus 208 ~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~-~~GrpI~lSls 251 (636)
.++++|.|+|=+||++ |+ +.|++.++ .+|.|+++|-.
T Consensus 173 ~L~~~gadlIvLDCmG---Yt----~~~r~~~~~~~g~PVlLsr~ 210 (221)
T PF07302_consen 173 ELAEQGADLIVLDCMG---YT----QEMRDIVQRALGKPVLLSRT 210 (221)
T ss_pred HHHhcCCCEEEEECCC---CC----HHHHHHHHHHhCCCEEeHHH
Confidence 8999999999999984 22 45777775 48999998853
No 82
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=49.55 E-value=23 Score=35.12 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=42.8
Q ss_pred ccccCCHHHHHHHHHHHHhccccCCce---EEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHH
Q 006666 46 FCWTISEEEFLQSAEIISQRLRPHGYE---YVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (636)
Q Consensus 46 ~~~~ItE~~v~~~Ad~ma~gL~~~GY~---yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~ 122 (636)
|.+-.+.++..++|+.+.+.++..|+. .+.+| +.... + ...... -+++
T Consensus 63 f~~~~~~~~a~~eA~~f~~~~~~~~~~~~~~~~lD--~E~~~-----------------~-----~~~~~~-----~~~~ 113 (192)
T cd06522 63 YAHYTSAADAQAEARYFANTAKSLGLSKNTVMVAD--MEDSS-----------------S-----SGNATA-----NVNA 113 (192)
T ss_pred EEecCChHHHHHHHHHHHHHHHHcCCCCCCceEEE--eecCC-----------------C-----cchHHH-----HHHH
Confidence 444457788888888766656655543 35577 33210 0 011111 4789
Q ss_pred HHHHHHHcCC-EEEEEeecC
Q 006666 123 VAKKVHAMGL-KFGIHVMRG 141 (636)
Q Consensus 123 Lad~iHskGL-KfGIy~~pG 141 (636)
+.+.|++.|. ++|||+.+-
T Consensus 114 F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 114 FWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred HHHHHHHcCCCCcEEEccHH
Confidence 9999999998 899999763
No 83
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=49.12 E-value=18 Score=36.41 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHcCCEEEEEeecCcccc
Q 006666 119 GFTEVAKKVHAMGLKFGIHVMRGISTQ 145 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfGIy~~pGi~~~ 145 (636)
....++++||++|||+|+=+.||++-.
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT~Ve 126 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGTPVE 126 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCCcHH
Confidence 578999999999999999999987644
No 84
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=48.94 E-value=37 Score=35.24 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHcCCEEE
Q 006666 119 GFTEVAKKVHAMGLKFG 135 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfG 135 (636)
-++.|.+|++++|+.|-
T Consensus 57 ~~~~L~~~~~~~gi~f~ 73 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFF 73 (241)
T ss_dssp HHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 58999999999999983
No 85
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=48.86 E-value=31 Score=29.73 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=30.6
Q ss_pred ccccccCCcccccchhhhhccccccccc-cccc---cCCCCCccccCCCcceEEee
Q 006666 493 VGVCLDASPKWKLTSKELRRGSFSKCKR-DANQ---LNPSGALISSYSGLCATVNL 544 (636)
Q Consensus 493 ~~~C~~~~~~~~~~~~~~~~~~~~~c~~-~~~q---~~~~g~l~~~~s~~c~~v~~ 544 (636)
.+.||++.... . -....-..|.- ..+| +.++|.+++..+++|-.|..
T Consensus 51 ~~~Cl~~~~~~--~---~~~~~~~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~ 101 (124)
T cd00161 51 SNLCLDVGGDA--P---GSKVRLYTCSGGSDNQRWTFNKDGTIRNLKSGKCLDVKG 101 (124)
T ss_pred CCeEEcccCCC--C---CCEEEEEECCCCCcCCEEEECCCcEEEECCCCeEEeCCC
Confidence 45677765531 0 00113356876 6678 77789999888889988775
No 86
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.77 E-value=2.3e+02 Score=30.13 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.9
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEeccc
Q 006666 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYL 79 (636)
Q Consensus 48 ~~ItE~~v~~~Ad~ma---~gL~~~GY~yi~IDdG 79 (636)
..+|+++|.+..+.++ +.++++||+-|.|-.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGA 163 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 3689999999998553 4678899999999764
No 87
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=47.66 E-value=81 Score=37.75 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=28.8
Q ss_pred eecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~~ 223 (636)
.+|..+|.+++|+-..++.+. +.|||-+.+|...
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechh
Confidence 478999999999976677775 7999999999753
No 88
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=47.40 E-value=3.2e+02 Score=29.62 Aligned_cols=35 Identities=20% Similarity=-0.011 Sum_probs=31.2
Q ss_pred eeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC
Q 006666 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF 223 (636)
Q Consensus 189 ~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~ 223 (636)
+++|..+|+-++++...++.+.+=|||-|=+|.+.
T Consensus 136 ~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lD 170 (315)
T TIGR01370 136 YDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLID 170 (315)
T ss_pred eeEecccHHHHHHHHHHHHHHHHcCCCeEeeccch
Confidence 58999999999999777888899999999999874
No 89
>PRK03705 glycogen debranching enzyme; Provisional
Probab=47.27 E-value=79 Score=37.67 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=28.2
Q ss_pred eecCCchHHHHHHHHHHHHHH-hhCCCEEEecCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa-~WGVDylK~D~~ 222 (636)
.++..+|.+++|+-..++.+. +.|||-+.+|-.
T Consensus 305 ~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 305 TLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcH
Confidence 478899999999977777776 599999999964
No 90
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.18 E-value=1.2e+02 Score=31.68 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=41.9
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC--CCCC----ChHHHHHHHHHHHhcC-CCeEEEcC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF--GDDL----DINEISFVSEVLKELD-RPIVYSLS 251 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~--~~~~----~~~~~~am~~Al~~~G-rpI~lSls 251 (636)
+||.|||=|+.-=+...+.-.+-|+.||.+-=-. ..+. ..+.++...+++.+.+ +.|++..-
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflttG 138 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFLTTG 138 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEeCc
Confidence 5899999887766776777789999999987211 1111 1244566666666666 77888864
No 91
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=47.12 E-value=40 Score=32.89 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=44.1
Q ss_pred cccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHH
Q 006666 47 CWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (636)
Q Consensus 47 ~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~ 126 (636)
..+.+++++.+-.+.| ++.|.++++| .|-.-.. ...+++ .+ . +.+|.- ....=+..+.+.
T Consensus 14 ~~~~~~~~W~~~~~~m----~~~GidtlIl--q~~~~~~-~~~yps--------~~---~-~~~~~~-~~~d~l~~~L~~ 73 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM----KAIGIDTLIL--QWTGYGG-FAFYPS--------KL---S-PGGFYM-PPVDLLEMILDA 73 (166)
T ss_pred hcCCCHHHHHHHHHHH----HHcCCcEEEE--EEeecCC-cccCCc--------cc---c-CccccC-CcccHHHHHHHH
Confidence 4578999999988775 6788889887 4543311 110110 00 0 112221 001137888888
Q ss_pred HHHcCCE--EEEEeec
Q 006666 127 VHAMGLK--FGIHVMR 140 (636)
Q Consensus 127 iHskGLK--fGIy~~p 140 (636)
....||| +|+|.++
T Consensus 74 A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 74 ADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHcCCEEEEeCCCCc
Confidence 9999998 5888765
No 92
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=45.86 E-value=1.2e+02 Score=38.82 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=39.0
Q ss_pred ecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH-HHHHHHHHhcCCCeE
Q 006666 191 VNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI-SFVSEVLKELDRPIV 247 (636)
Q Consensus 191 lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~-~am~~Al~~~GrpI~ 247 (636)
+|..+|.+++|+...++.+.+.|||-+.+|-...-.-.+.++ ..++..+++...+.+
T Consensus 313 ~n~~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~ 370 (1221)
T PRK14510 313 PNLERPFILRLPMDVLRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPV 370 (1221)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcC
Confidence 577899999999888888888999999999643210012233 556666666654433
No 93
>PRK13840 sucrose phosphorylase; Provisional
Probab=44.16 E-value=55 Score=37.64 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=42.8
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC---CC----CCC-hHH---HHHHHHHHHhcCCCeEE
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF---GD----DLD-INE---ISFVSEVLKELDRPIVY 248 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~---~~----~~~-~~~---~~am~~Al~~~GrpI~l 248 (636)
-||..+|++++++...++.+.+-|||.+.+|.+. .. ... ++. ++.|++.++..+..++-
T Consensus 163 DLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~ 232 (495)
T PRK13840 163 DIDVHSAAGWEYLMSILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLV 232 (495)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEE
Confidence 3789999999999999999999999999999652 11 111 222 36678777777544443
No 94
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=44.12 E-value=2.2e+02 Score=30.32 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCCCCC--Ch---HHHH-HHHHHHHhcCCCeEEEcCC
Q 006666 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDL--DI---NEIS-FVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 198 aq~y~~s~~~~fa~WGVDylK~D~~~~~~~--~~---~~~~-am~~Al~~~GrpI~lSls~ 252 (636)
.+.|.+++.+.+.++|+|-|=+|+-+.... .+ +.+. .+++.-++.++.+++++.|
T Consensus 95 ~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~AP 155 (312)
T cd02871 95 EDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPNFILTMAP 155 (312)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 567889999999999999999998653221 12 3332 2333333456678888876
No 95
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=43.96 E-value=44 Score=37.49 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls 251 (636)
+..++..++.=|+||||=|- +..+++.+ +++ +++++|-+++|+..+|..+
T Consensus 162 ~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~N 218 (412)
T TIGR03326 162 HAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLAN 218 (412)
T ss_pred HHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 44556778888999999994 44555554 333 5677777899998777765
No 96
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=43.47 E-value=49 Score=35.73 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls 251 (636)
+..++..++.=|+||||=|- +...++.+ +++ +++.+|-+++|++.+|...
T Consensus 32 ~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~N 88 (309)
T PF00016_consen 32 LAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAAN 88 (309)
T ss_dssp HHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEE
T ss_pred hhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecc
Confidence 34456667778999999995 44555654 333 5678888899998666654
No 97
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=43.38 E-value=47 Score=36.10 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHcCCEE
Q 006666 118 KGFTEVAKKVHAMGLKF 134 (636)
Q Consensus 118 ~Gmk~Lad~iHskGLKf 134 (636)
.+++.|.+|++++|+.|
T Consensus 76 e~~~~L~~~~~~~Gi~~ 92 (329)
T TIGR03569 76 EDHRELKEYCESKGIEF 92 (329)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 48999999999999987
No 98
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=43.11 E-value=20 Score=35.33 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=44.5
Q ss_pred cccccCCHHHHHHHHHHHHhccccCCceE-EEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHH
Q 006666 45 SFCWTISEEEFLQSAEIISQRLRPHGYEY-VVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEV 123 (636)
Q Consensus 45 ~~~~~ItE~~v~~~Ad~ma~gL~~~GY~y-i~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~L 123 (636)
+|.+..+.++-.++|+.+.+.++..+-.+ +.||--+.... ... ++....-. -++.+
T Consensus 62 Hf~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~----------------~~~--~~~~~~~~-----~~~~f 118 (191)
T cd06414 62 FYSYAVTVAEAREEAEFVLRLIKGYKLSYPVYYDLEDETQL----------------GAG--LSKDQRTD-----IANAF 118 (191)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhccCCCCCeEEEeecCCCC----------------CCC--CCHHHHHH-----HHHHH
Confidence 34444566778888987766666655444 46773221110 000 01111111 47899
Q ss_pred HHHHHHcCCEEEEEeecCc
Q 006666 124 AKKVHAMGLKFGIHVMRGI 142 (636)
Q Consensus 124 ad~iHskGLKfGIy~~pGi 142 (636)
++.|++.|.+++||+.+..
T Consensus 119 ~~~v~~~G~~~~iY~~~~~ 137 (191)
T cd06414 119 CETIEAAGYYPGIYANLSW 137 (191)
T ss_pred HHHHHHcCCCeEEEecHHH
Confidence 9999999999999997753
No 99
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=43.05 E-value=2.3e+02 Score=29.51 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHH-hcCCCeEEEcCC
Q 006666 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLK-ELDRPIVYSLSP 252 (636)
Q Consensus 198 aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~-~~GrpI~lSls~ 252 (636)
.+.|++++.+.+.++|||-|=+|+-++ .+.+.|..+-+.|+ +.++..++++.|
T Consensus 97 r~~f~~s~~~~~~~~~~DGiDiDwE~p--~~~~~~~~ll~~Lr~~~~~~~~lT~Ap 150 (256)
T cd06546 97 FERYYGQLRDMIRRRGLDGLDLDVEEP--MSLDGIIRLIDRLRSDFGPDFIITLAP 150 (256)
T ss_pred HHHHHHHHHHHHHHhCCCceEEeeecC--CCHhHHHHHHHHHHHHhCCCcEEEECC
Confidence 456888989999999999999998653 22345654444443 446667777765
No 100
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=42.72 E-value=52 Score=34.61 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCC-----CC--CChHHHHHHHHHHHhcCCCeEEEcCC
Q 006666 198 GRAFLRSLYQQYAEWGVDFVKHDCVFG-----DD--LDINEISFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 198 aq~y~~s~~~~fa~WGVDylK~D~~~~-----~~--~~~~~~~am~~Al~~~GrpI~lSls~ 252 (636)
-++|..++.+++..||||-|-+|--.+ +. .-+...+++++--+..|..+++++-|
T Consensus 119 E~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk~f~itMAP 180 (332)
T COG3469 119 EQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGKNFFITMAP 180 (332)
T ss_pred HHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCCceEEEecC
Confidence 478999999999999999999995221 11 12333456666667889999999986
No 101
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=40.20 E-value=1.9e+02 Score=29.72 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH----HHHHHHHHhcCCCeEEEcC
Q 006666 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 199 q~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~----~am~~Al~~~GrpI~lSls 251 (636)
+.+++++++.+.+.|+|-|=+|+-+.... .+.| +.+++++++.|. +++++
T Consensus 85 ~~fi~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~--~lt~a 138 (253)
T cd06545 85 KALVDKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGK--LLTAA 138 (253)
T ss_pred HHHHHHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCc--EEEEE
Confidence 45889999999999999999998543221 3333 556777766554 44444
No 102
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=40.02 E-value=3.6e+02 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.6
Q ss_pred hHHHHHHHHHcCCEEEEEe
Q 006666 120 FTEVAKKVHAMGLKFGIHV 138 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~ 138 (636)
++.-.+..++.||++|.|.
T Consensus 44 ~~~n~~~A~~aGl~vG~Yh 62 (192)
T cd06522 44 AASQIANAKAAGLKVSAYH 62 (192)
T ss_pred HHHHHHHHHHCCCeeEEEE
Confidence 6677778999999999997
No 103
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=39.73 E-value=49 Score=36.55 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcCC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~----~~am~~Al~~~GrpI~lSls~ 252 (636)
+..++..++.=|+||||=|- +..+++.+ ++ .+++.+|-+++|+..+|+.+.
T Consensus 145 ~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 202 (366)
T cd08148 145 TAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNV 202 (366)
T ss_pred HHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEc
Confidence 44556678888999999994 44555554 33 367788888999988887663
No 104
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=39.39 E-value=1.3e+02 Score=33.29 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=51.5
Q ss_pred ccCCHHHHHHHHHHH---HhccccCCceEEEecc---cccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChH
Q 006666 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDY---LWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFT 121 (636)
Q Consensus 48 ~~ItE~~v~~~Ad~m---a~gL~~~GY~yi~IDd---GW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk 121 (636)
..+|+++|.+..+.+ +...+++||+-|.|=. ||--..--....| --.|+||--.-+-.||+ .
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N----~RtDeyGGslenR~rf~--------~ 205 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFN----KRTDKYGGSLENRLRFA--------I 205 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccC----CCCCcCCCCHHHHhHHH--------H
Confidence 458999999999854 3457789999999976 6631100000000 01367776555666787 6
Q ss_pred HHHHHHHHc---CCEEEEEeec
Q 006666 122 EVAKKVHAM---GLKFGIHVMR 140 (636)
Q Consensus 122 ~Lad~iHsk---GLKfGIy~~p 140 (636)
.+++.|++. ++.+|+=+.+
T Consensus 206 eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 206 EIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHhcCCCceEEEEEec
Confidence 777788764 5677776654
No 105
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=39.34 E-value=50 Score=36.83 Aligned_cols=51 Identities=27% Similarity=0.436 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls~ 252 (636)
+..++..++.=|+||||=|- +...++.+ +++ +++++|-+++|+..+|..+.
T Consensus 142 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~Ni 199 (391)
T cd08209 142 LAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNL 199 (391)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEc
Confidence 34456677888999999994 44556654 333 56777778899987777653
No 106
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=39.20 E-value=1.1e+02 Score=33.53 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=44.4
Q ss_pred hHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHH
Q 006666 120 FTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGR 199 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq 199 (636)
..+||+.++++|+|+|+++ +|.-. ..+..|+..+ ...++.++++.+.--.+.++.-.++++....+
T Consensus 66 vi~la~~l~~rG~~~gvvS-RGYgg--~~~~~~~~~~----------~~~~a~~~GDEPlLlA~~t~~pv~v~~~R~~~- 131 (336)
T COG1663 66 VIWLAEALQARGVRVGVVS-RGYGG--KLKVVPLVDN----------IHTTAAEVGDEPLLLARRTGAPVAVSPDRKDA- 131 (336)
T ss_pred HHHHHHHHHhcCCeeEEEe-cCcCC--CCcccccccc----------CcCChHHcCchHHHHhhhcCCcEEEehhHHHH-
Confidence 7899999999999999986 44311 0111222222 12345555554433222222223444433332
Q ss_pred HHHHHHHHHHHh-hCCCEEEecC
Q 006666 200 AFLRSLYQQYAE-WGVDFVKHDC 221 (636)
Q Consensus 200 ~y~~s~~~~fa~-WGVDylK~D~ 221 (636)
.-...+. -|+|.|=+|.
T Consensus 132 -----~~~l~~~~~~~diIi~DD 149 (336)
T COG1663 132 -----AKALLAAHLGCDIIVLDD 149 (336)
T ss_pred -----HHHHHhhCCCCCEEEEcC
Confidence 1223442 7999999995
No 107
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=39.11 E-value=58 Score=37.20 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=30.1
Q ss_pred ecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006666 191 VNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (636)
Q Consensus 191 lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~ 222 (636)
||..+|.+++++..+++.|.+-|||.+.+|-+
T Consensus 160 LN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 160 LDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 78899999999999999999999999999965
No 108
>PRK06852 aldolase; Validated
Probab=38.70 E-value=1.5e+02 Score=31.97 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcC-CCeEEEc
Q 006666 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELD-RPIVYSL 250 (636)
Q Consensus 201 y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~G-rpI~lSl 250 (636)
++...++.=++.|-|+||+.++.... ....+.++++.+.+| .|++++-
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~--~g~~e~f~~vv~~~g~vpVviaG 237 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEG--ANPAELFKEAVLAAGRTKVVCAG 237 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCC--CCCHHHHHHHHHhCCCCcEEEeC
Confidence 45555677789999999999874211 012356677788884 5787764
No 109
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=38.48 E-value=23 Score=34.98 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHcCCEEEEEeecC
Q 006666 119 GFTEVAKKVHAMGLKFGIHVMRG 141 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfGIy~~pG 141 (636)
-++.+++.+++.|.++|||+.+.
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 47889999999999999999774
No 110
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=37.92 E-value=1.2e+02 Score=32.00 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=35.5
Q ss_pred ccccCCceEEEecccccccccCCccccCCCcccccCCCCcccC---CCCCCCCCCCCChHHHHHHHHHcCCEEEEEee
Q 006666 65 RLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD---PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVM 139 (636)
Q Consensus 65 gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd---~~kFPs~~~~~Gmk~Lad~iHskGLKfGIy~~ 139 (636)
.+.++|.+.|.|+|-|.... -+.|. .--.|. ++.+++.||+.|.+.++|..
T Consensus 176 ~~~~~G~d~i~i~d~~~~~~------------------~isp~~f~e~~~p~------~k~i~~~i~~~g~~~~lH~c 229 (330)
T cd03465 176 ALIEAGADGIYISDPWASSS------------------ILSPEDFKEFSLPY------LKKVFDAIKALGGPVIHHNC 229 (330)
T ss_pred HHHHhCCCEEEEeCCccccC------------------CCCHHHHHHHhhHH------HHHHHHHHHHcCCceEEEEC
Confidence 35677999999999885421 00110 011464 89999999999999999873
No 111
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=37.60 E-value=57 Score=36.57 Aligned_cols=51 Identities=29% Similarity=0.424 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls~ 252 (636)
+..++..++.=|+||||=|- +...++.+ +++ +++++|-+++|+..+|..+.
T Consensus 157 ~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni 214 (407)
T TIGR03332 157 LKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNL 214 (407)
T ss_pred HHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecC
Confidence 33455667778999999995 44455544 333 56788888999988888763
No 112
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=37.43 E-value=91 Score=33.92 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=46.8
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecccc--------cccccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006666 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (636)
Q Consensus 48 ~~ItE~~v~~~Ad~ma---~gL~~~GY~yi~IDdGW--------~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~ 116 (636)
..+|+++|.+.++.++ ..++++||+-|.|=.+- ..... --.|+||--.-|-.||+
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N----------~RtD~yGGslenR~Rf~---- 195 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSN----------KRTDEYGGSPENRYRFL---- 195 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccC----------CcCCCCCCCHHHHHHHH----
Confidence 4689999999998553 46788999999996552 11000 01366765444556777
Q ss_pred CCChHHHHHHHHHc-CCEEEEEe
Q 006666 117 GKGFTEVAKKVHAM-GLKFGIHV 138 (636)
Q Consensus 117 ~~Gmk~Lad~iHsk-GLKfGIy~ 138 (636)
..+++.|++. .+.+|+=+
T Consensus 196 ----~eii~~ir~~~~~~v~vRi 214 (337)
T PRK13523 196 ----REIIDAVKEVWDGPLFVRI 214 (337)
T ss_pred ----HHHHHHHHHhcCCCeEEEe
Confidence 5677777775 44555543
No 113
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=36.92 E-value=59 Score=36.41 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=35.7
Q ss_pred HHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006666 203 RSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 203 ~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls~ 252 (636)
..++..++.=|+||||=|- +...++.+ +++ +++++|-+++|+..+|..+.
T Consensus 153 a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 209 (407)
T PRK09549 153 KEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNL 209 (407)
T ss_pred HHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEec
Confidence 3445567777999999994 55556654 333 56788888999988888763
No 114
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=36.73 E-value=60 Score=36.38 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcCC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~----~~am~~Al~~~GrpI~lSls~ 252 (636)
+..++..++.=||||||=|- +...++.+ ++ .+++++|-+++|+..+|..+.
T Consensus 161 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 218 (406)
T cd08207 161 TAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNI 218 (406)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEec
Confidence 33455667777999999994 44555554 23 367888888999988877663
No 115
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=36.30 E-value=61 Score=36.39 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls~ 252 (636)
+..++..++.=|+||||=|- +..+++.+ +++ +++.+|-+++|+..+|..+.
T Consensus 149 ~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni 206 (412)
T cd08213 149 HAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANI 206 (412)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEe
Confidence 34456678888999999994 44555554 333 56778888999988887663
No 116
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=35.76 E-value=43 Score=36.34 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=20.4
Q ss_pred hHHHHHHHHHcCCEEEEEeecC
Q 006666 120 FTEVAKKVHAMGLKFGIHVMRG 141 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~~pG 141 (636)
.+.|++.++..+++||||..++
T Consensus 152 V~EL~~A~rk~dirfGLY~Slf 173 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLF 173 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHH
Confidence 7999999999999999999875
No 117
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.71 E-value=1.7e+02 Score=30.75 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHcCCEEE
Q 006666 118 KGFTEVAKKVHAMGLKFG 135 (636)
Q Consensus 118 ~Gmk~Lad~iHskGLKfG 135 (636)
.|++.|.+++++.|+.+-
T Consensus 78 ~gl~~l~~~~~~~Gl~~~ 95 (266)
T PRK13398 78 EGLKILKEVGDKYNLPVV 95 (266)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 489999999999999874
No 118
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.53 E-value=2.1e+02 Score=30.02 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcC
Q 006666 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 206 ~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls 251 (636)
++.+++ .+|++|+=-- .... ..+-+++.++|+||+++--
T Consensus 92 v~~~~e-~vdilqIgs~-----~~~n-~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 92 LEEAYD-YLDVIQVGAR-----NMQN-FEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHh-cCCEEEECcc-----cccC-HHHHHHHHccCCeEEEeCC
Confidence 355667 6999998521 1112 3466777788999998854
No 119
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=34.65 E-value=55 Score=34.84 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=24.4
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCC
Q 006666 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD 226 (636)
Q Consensus 190 ~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~ 226 (636)
.+|+..|+ +.++.+|+||+|||-+--+..++
T Consensus 138 PlDp~EPe------NTAeAIasWgl~YiVlTSVDRDD 168 (360)
T KOG2672|consen 138 PLDPNEPE------NTAEAIASWGLDYIVLTSVDRDD 168 (360)
T ss_pred CCCCCCcc------cHHHHHHHcCCCeEEEEeccccc
Confidence 48888886 56788999999999987665443
No 120
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.55 E-value=5.1e+02 Score=26.37 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006666 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (636)
Q Consensus 51 tE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHsk 130 (636)
+...+.+.++. |.++|.+++.+| .|| |.++|| -.|. -.+.+.|+..
T Consensus 10 d~~~l~~~i~~----l~~~g~~~lH~D-------------------vmD--G~Fvpn-~tfg--------~~~i~~i~~~ 55 (220)
T PRK08883 10 DFARLGEDVEK----VLAAGADVVHFD-------------------VMD--NHYVPN-LTFG--------APICKALRDY 55 (220)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEEe-------------------ccc--CcccCc-cccC--------HHHHHHHHHh
Q ss_pred --CCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHH
Q 006666 131 --GLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (636)
Q Consensus 131 --GLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~ 208 (636)
.+.+=+|.|- ++|+ .+++.
T Consensus 56 ~~~~~~dvHLMv-----------------------------------------------------~~p~------~~i~~ 76 (220)
T PRK08883 56 GITAPIDVHLMV-----------------------------------------------------KPVD------RIIPD 76 (220)
T ss_pred CCCCCEEEEecc-----------------------------------------------------CCHH------HHHHH
Q ss_pred HHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCCC
Q 006666 209 YAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTG 255 (636)
Q Consensus 209 fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls~g~~ 255 (636)
|++-|.|+|=+-. ........+-+.+++.|-..-+.++|..+
T Consensus 77 ~~~~gad~i~~H~-----Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp 118 (220)
T PRK08883 77 FAKAGASMITFHV-----EASEHVDRTLQLIKEHGCQAGVVLNPATP 118 (220)
T ss_pred HHHhCCCEEEEcc-----cCcccHHHHHHHHHHcCCcEEEEeCCCCC
No 121
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=34.38 E-value=68 Score=36.06 Aligned_cols=50 Identities=18% Similarity=0.102 Sum_probs=35.7
Q ss_pred HHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006666 203 RSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 203 ~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls~ 252 (636)
..++..++.=|+||||=|- +...++.+ +++ +++.+|-+++|+..+|..+.
T Consensus 151 a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 207 (414)
T cd08206 151 ARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNI 207 (414)
T ss_pred HHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEecc
Confidence 3445567777999999995 45555554 333 56778888999988888763
No 122
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=34.04 E-value=1.9e+02 Score=33.23 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=34.5
Q ss_pred CeeEEEEeCCCCcEEEEEEeCCCCCeEEEEecccccccCCCCCCCCCceeEEeccCCCccceeccEEEEEEcCcceEEE
Q 006666 553 GIRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALF 631 (636)
Q Consensus 553 ~~~vW~~~~~~g~~~va~fN~~~~~~~it~~l~dl~~~l~g~~~~~~~~~~~dlW~~~~~g~~~~~~~~~v~~hg~~l~ 631 (636)
+.++=+-.-+||+++|.++|.+++++++++.+++-.. + ...|.++||||..+=+
T Consensus 440 ~l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~-----------------------~--~~~~~~~lp~~s~~t~ 493 (496)
T PF02055_consen 440 GLEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSK-----------------------G--NNHFNVTLPPRSIVTT 493 (496)
T ss_dssp TEEEEEEEETTSEEEEEEEE-SSS-EEEEEEEECTTT-----------------------E--E--EEEEEE-TTEEEE
T ss_pred ceeEEEEECCCCCEEEEEEcCCCCccceEEEEecCCc-----------------------c--eeEEEEEeCCCceEEE
Confidence 4555555668999999999999988887776665221 1 1357788888877644
No 123
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=33.90 E-value=64 Score=36.33 Aligned_cols=49 Identities=20% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHHHhhCCCEEEec-CCCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006666 203 RSLYQQYAEWGVDFVKHD-CVFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 203 ~s~~~~fa~WGVDylK~D-~~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls 251 (636)
..++..++.=|+||||=| .+..+++.+ +++ +++++|-+++|+...|..+
T Consensus 179 a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~N 234 (424)
T cd08208 179 AELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLAN 234 (424)
T ss_pred HHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 445566778899999999 455556654 333 5788888899998777765
No 124
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=33.89 E-value=99 Score=34.44 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=29.6
Q ss_pred HHHHhhCCCEEEec-CCCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006666 207 QQYAEWGVDFVKHD-CVFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 207 ~~fa~WGVDylK~D-~~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls 251 (636)
-...+=||||||=| .+.+.++.+ +++ +++.++=+++|....|.+.
T Consensus 178 yE~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeTGekk~y~~N 229 (429)
T COG1850 178 YELLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAETGEKKMYAVN 229 (429)
T ss_pred HHHHhcCcceecchhhccCcccccHHHHHHHHHHHHHHHHHhhCceEEEEee
Confidence 34556799999999 566666654 444 3455555678876666554
No 125
>PRK09936 hypothetical protein; Provisional
Probab=33.83 E-value=1.1e+02 Score=32.79 Aligned_cols=71 Identities=20% Similarity=0.363 Sum_probs=48.7
Q ss_pred ecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCC
Q 006666 40 WNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKG 119 (636)
Q Consensus 40 WNSW~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~G 119 (636)
|.-||. ..+++.+++.+.-.. ++..|.+.++| .|..- |. +.|+...+ =
T Consensus 26 ~Qp~n~-d~~~~~~qWq~~~~~----~~~~G~~tLiv--QWt~y------------------G~-----~~fg~~~g--~ 73 (296)
T PRK09936 26 YQPQNR-DSQVTDTQWQGLWSQ----LRLQGFDTLVV--QWTRY------------------GD-----ADFGGQRG--W 73 (296)
T ss_pred eccccc-cCCCCHHHHHHHHHH----HHHcCCcEEEE--Eeeec------------------cC-----CCcccchH--H
Confidence 444444 336899999987765 46789999999 68532 21 14654311 2
Q ss_pred hHHHHHHHHHcCCE--EEEEeecCc
Q 006666 120 FTEVAKKVHAMGLK--FGIHVMRGI 142 (636)
Q Consensus 120 mk~Lad~iHskGLK--fGIy~~pGi 142 (636)
+..+.+..+++||| +|||.+|..
T Consensus 74 La~~l~~A~~~Gl~v~vGL~~Dp~y 98 (296)
T PRK09936 74 LAKRLAAAQQAGLKLVVGLYADPEF 98 (296)
T ss_pred HHHHHHHHHHcCCEEEEcccCChHH
Confidence 78888889999998 699998843
No 126
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=33.72 E-value=1.4e+02 Score=31.92 Aligned_cols=52 Identities=10% Similarity=0.196 Sum_probs=35.2
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCC-CC--CCCCCCCCChHHHHHHHHHcCCEEEEEee
Q 006666 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DR--WPSSRGGKGFTEVAKKVHAMGLKFGIHVM 139 (636)
Q Consensus 64 ~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~-~k--FPs~~~~~Gmk~Lad~iHskGLKfGIy~~ 139 (636)
+.+.++|.+.|+++|.|.... .+.|.. .+ .|. ++.+.+.||+.|-.++||..
T Consensus 187 ~~~~~~Gad~I~i~dp~a~~~------------------~lsp~~f~e~~~p~------~k~i~~~i~~~g~~~ilH~C 241 (340)
T TIGR01463 187 KAMVEAGADVIAIADPFASSD------------------LISPETYKEFGLPY------QKRLFAYIKEIGGITVLHIC 241 (340)
T ss_pred HHHHHcCCCEEEecCCccCcc------------------ccCHHHHHHHHHHH------HHHHHHHHHhcCCceEEEEC
Confidence 346788999999999885321 111110 11 254 89999999999988888763
No 127
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=33.29 E-value=82 Score=35.97 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls 251 (636)
+..++..++.=|+||||=|- +..+++.+ +++ +++.+|-+++|+..+|+.+
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~N 234 (468)
T PRK04208 178 YGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLN 234 (468)
T ss_pred HHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEe
Confidence 34456667777999999995 44455544 333 5778888899998777765
No 128
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=32.16 E-value=1e+02 Score=33.97 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=26.6
Q ss_pred HHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCC
Q 006666 207 QQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 207 ~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls~ 252 (636)
+.|++||++.|.+|+- ++.+++..|++- |-+|.|..|.
T Consensus 83 ~~~~~lGi~~lRlD~G----f~~~~ia~ls~n----g~~I~LNASt 120 (357)
T PF05913_consen 83 SFFKELGIDGLRLDYG----FSGEEIAKLSKN----GIKIELNAST 120 (357)
T ss_dssp HHHHHHT-SEEEESSS-----SCHHHHHHTTT-----SEEEEETTT
T ss_pred HHHHHcCCCEEEECCC----CCHHHHHHHHhC----CCEEEEECCC
Confidence 6799999999999973 345666666554 7788888874
No 129
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=31.88 E-value=71 Score=34.86 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEe-cccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHH
Q 006666 50 ISEEEFLQSAEIISQRLRPHGYEYVVV-DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (636)
Q Consensus 50 ItE~~v~~~Ad~ma~gL~~~GY~yi~I-DdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iH 128 (636)
.+++.+.+-++.| +++|+++|-| .-.|..-.+. -|.. .|. .|..+.+.++
T Consensus 7 ~~~e~~~~d~~~m----~~~G~n~vri~~~~W~~lEP~--------------eG~y-----dF~------~lD~~l~~a~ 57 (374)
T PF02449_consen 7 WPEEEWEEDLRLM----KEAGFNTVRIGEFSWSWLEPE--------------EGQY-----DFS------WLDRVLDLAA 57 (374)
T ss_dssp S-CCHHHHHHHHH----HHHT-SEEEE-CCEHHHH-SB--------------TTB--------H------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHcCCCEEEEEEechhhccCC--------------CCee-----ecH------HHHHHHHHHH
Confidence 4567777777765 6789999997 6678643221 1222 255 4999999999
Q ss_pred HcCCEEEEEee
Q 006666 129 AMGLKFGIHVM 139 (636)
Q Consensus 129 skGLKfGIy~~ 139 (636)
+.|+|+=|-+.
T Consensus 58 ~~Gi~viL~~~ 68 (374)
T PF02449_consen 58 KHGIKVILGTP 68 (374)
T ss_dssp CTT-EEEEEEC
T ss_pred hccCeEEEEec
Confidence 99999877553
No 130
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=31.81 E-value=98 Score=34.16 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls 251 (636)
+..++..++.=|||+||-|- +...++.+ +++ +++.+|-+++|+...|..+
T Consensus 143 ~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~N 199 (364)
T cd08210 143 LAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPN 199 (364)
T ss_pred HHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEe
Confidence 44556777888999999995 44455543 333 4566666778886555544
No 131
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=31.33 E-value=3.4e+02 Score=28.80 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCC
Q 006666 202 LRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls~ 252 (636)
+..-.+.=++.|-|+||.++... .+.++++++.++-|++.+--+
T Consensus 168 v~~aaRlaaelGADIiK~~ytg~-------~e~F~~vv~~~~vpVviaGG~ 211 (265)
T COG1830 168 VGYAARLAAELGADIIKTKYTGD-------PESFRRVVAACGVPVVIAGGP 211 (265)
T ss_pred HHHHHHHHHHhcCCeEeecCCCC-------hHHHHHHHHhCCCCEEEeCCC
Confidence 33334566899999999998532 267899999999999887543
No 132
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=30.87 E-value=88 Score=35.55 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~----~~am~~Al~~~GrpI~lSls 251 (636)
+..++..++.=|+||||=|- +...++.+ ++ .+++++|-+++|+..+|..+
T Consensus 163 ~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~N 219 (450)
T cd08212 163 YGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLN 219 (450)
T ss_pred HHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeecc
Confidence 44556778888999999994 44555544 23 36788888899988777765
No 133
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=30.38 E-value=91 Score=35.69 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls 251 (636)
+..++..++.=||||||=|- +...++.+ +++ +++++|-+++|+..+|.++
T Consensus 185 ~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~N 241 (475)
T CHL00040 185 YGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLN 241 (475)
T ss_pred HHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeec
Confidence 34455667788999999994 55556654 333 5678888889997666654
No 134
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=29.94 E-value=6.1e+02 Score=25.83 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=30.0
Q ss_pred HHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCC
Q 006666 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGT 254 (636)
Q Consensus 206 ~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls~g~ 254 (636)
++.+++.|+|+|=+-.-. ........-+++++.|..+-+.++|..
T Consensus 81 i~~~~~~Gad~itvH~ea----~~~~~~~~l~~ik~~G~~~gval~p~t 125 (228)
T PTZ00170 81 VDDFAKAGASQFTFHIEA----TEDDPKAVARKIREAGMKVGVAIKPKT 125 (228)
T ss_pred HHHHHHcCCCEEEEeccC----CchHHHHHHHHHHHCCCeEEEEECCCC
Confidence 467889999999775421 112255666777788877777777643
No 135
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.75 E-value=3.2e+02 Score=28.84 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcC
Q 006666 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 201 y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls 251 (636)
++..-++.=++.|-|+||..++ . +.|+++++.+..|+++.--
T Consensus 159 ~ia~aaRiaaELGADiVK~~y~--------~-~~f~~vv~a~~vPVviaGG 200 (264)
T PRK08227 159 YFSLATRIAAEMGAQIIKTYYV--------E-EGFERITAGCPVPIVIAGG 200 (264)
T ss_pred HHHHHHHHHHHHcCCEEecCCC--------H-HHHHHHHHcCCCcEEEeCC
Confidence 5566667778999999999985 1 5788888888889887643
No 136
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=29.01 E-value=55 Score=28.58 Aligned_cols=44 Identities=30% Similarity=0.511 Sum_probs=30.5
Q ss_pred cccCCcccccchhhhhccccccccc-cccc---cCCCCCccccCCCcceEEee
Q 006666 496 CLDASPKWKLTSKELRRGSFSKCKR-DANQ---LNPSGALISSYSGLCATVNL 544 (636)
Q Consensus 496 C~~~~~~~~~~~~~~~~~~~~~c~~-~~~q---~~~~g~l~~~~s~~c~~v~~ 544 (636)
||+..... +-.......|.. ..+| +.+++.+++..+++|-.+..
T Consensus 57 CL~~~~~~-----~~~~i~l~~C~~~~~~Q~W~~~~~~~i~n~~s~~cL~~~~ 104 (124)
T PF00652_consen 57 CLDVDGSS-----PGTKIVLWPCDSNSSNQRWKFDPDGRIRNKNSGLCLDVKG 104 (124)
T ss_dssp EEEESSSS-----TTEBEEEEETTTTGGGGBEEEETTSBEEETTTTEEEEEGG
T ss_pred EEEeeccC-----CCceEEEeeccCCccCCeEEEcCCeeEEeCCCCEEEEecC
Confidence 77665555 111224567885 4448 77799999999999988875
No 137
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=28.74 E-value=1.4e+02 Score=31.52 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=37.6
Q ss_pred chHH-HHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH----HHHHHHHHhcCCCeEEEc
Q 006666 195 LGAG-RAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELDRPIVYSL 250 (636)
Q Consensus 195 ~p~a-q~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~----~am~~Al~~~GrpI~lSl 250 (636)
+|.. +.+++++++...+.|+|-|=+|+-+..+.+.+.| +.++.+|.+.|.-+.+++
T Consensus 85 ~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~v 145 (298)
T cd06549 85 DPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTV 145 (298)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEEe
Confidence 3444 4488999999999999999999854333333444 456677766665444443
No 138
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=28.72 E-value=1.9e+02 Score=30.23 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH----HHHHHHHHhcC
Q 006666 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELD 243 (636)
Q Consensus 198 aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~----~am~~Al~~~G 243 (636)
.+.+++++.+.+.++|+|-|=+|+-+.. .+.+.+ +.++++|++.+
T Consensus 98 ~~~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~~~~ 146 (253)
T cd06544 98 VSNAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELKNNG 146 (253)
T ss_pred HHHHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhhhcC
Confidence 3566888999999999999999986542 234443 56777777655
No 139
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=27.97 E-value=7.9e+02 Score=26.63 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=47.1
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecccc--cccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHH
Q 006666 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (636)
Q Consensus 48 ~~ItE~~v~~~Ad~ma---~gL~~~GY~yi~IDdGW--~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~ 122 (636)
..+|+++|.+..+.++ ..++++||+-|.|-.+- --..--....| --.|+||--.-|-.||+ ..
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N----~R~D~yGGslenR~rf~--------~e 207 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSN----KRTDEYGGSIENRARFL--------LE 207 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccC----CCCCcCCCcHHHhhhHH--------HH
Confidence 4689999999998653 46788999999996443 11100000000 01367775555666787 67
Q ss_pred HHHHHHHc-CC-EEEEE
Q 006666 123 VAKKVHAM-GL-KFGIH 137 (636)
Q Consensus 123 Lad~iHsk-GL-KfGIy 137 (636)
+++.|++. |- .+|+=
T Consensus 208 ii~air~~vg~d~v~vR 224 (338)
T cd02933 208 VVDAVAEAIGADRVGIR 224 (338)
T ss_pred HHHHHHHHhCCCceEEE
Confidence 77788763 44 34443
No 140
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=27.80 E-value=1.2e+02 Score=29.50 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=22.5
Q ss_pred CCCCcEEEEEEeCCCCCeEEEEeccccc
Q 006666 561 GREGEIYVAFFNLNTEKTLISTKISDLA 588 (636)
Q Consensus 561 ~~~g~~~va~fN~~~~~~~it~~l~dl~ 588 (636)
..+++++|.+.|++.+++++++.|....
T Consensus 101 ~~~~~l~v~vVN~~~~~~~v~l~l~g~~ 128 (177)
T PF06964_consen 101 EDGGELYVKVVNRSSEPQTVTLNLQGFS 128 (177)
T ss_dssp TTTTEEEEEEEE-SSSBEEEEEEETTST
T ss_pred CCCCEEEEEEEECCCCCEEEEEEEcCCC
Confidence 3445799999999988999999998764
No 141
>smart00642 Aamy Alpha-amylase domain.
Probab=27.37 E-value=1.3e+02 Score=29.28 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHcCCEEEE
Q 006666 118 KGFTEVAKKVHAMGLKFGI 136 (636)
Q Consensus 118 ~Gmk~Lad~iHskGLKfGI 136 (636)
..|+.|++.+|++|+|+=+
T Consensus 70 ~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 70 EDFKELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 4699999999999999744
No 142
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=27.11 E-value=5.8e+02 Score=24.67 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCCCCCC---hHHHHHHHHHH-HhcCC-CeEEEcCC
Q 006666 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD---INEISFVSEVL-KELDR-PIVYSLSP 252 (636)
Q Consensus 198 aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~---~~~~~am~~Al-~~~Gr-pI~lSls~ 252 (636)
.+++.+++.+.+.++|+|.|=+|+-+....+ .+.+..+-+.| ++.++ ..++++.+
T Consensus 89 ~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~ 148 (210)
T cd00598 89 RAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAV 148 (210)
T ss_pred HHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEe
Confidence 4668899999999999999999986543332 34443322222 23333 46677664
No 143
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=26.98 E-value=2.1e+02 Score=31.17 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEec
Q 006666 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVD 77 (636)
Q Consensus 48 ~~ItE~~v~~~Ad~ma---~gL~~~GY~yi~ID 77 (636)
..+|+++|.+..+.++ ..++++||+.|.|=
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih 157 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIM 157 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4689999999998653 45778999999993
No 144
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=26.84 E-value=1.4e+02 Score=31.97 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCCCCC----------CChHHH----HHHHHHHHhc----CCCeEEEcC
Q 006666 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD----------LDINEI----SFVSEVLKEL----DRPIVYSLS 251 (636)
Q Consensus 199 q~y~~s~~~~fa~WGVDylK~D~~~~~~----------~~~~~~----~am~~Al~~~----GrpI~lSls 251 (636)
+.|++++++.+.+.|+|-|=+|+-+... .+.+.| +.++.++.+. +++.++++.
T Consensus 111 ~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~a 181 (322)
T cd06548 111 AKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIA 181 (322)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 5588999999999999999999865421 122333 5677777664 467788876
No 145
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=26.30 E-value=2.4e+02 Score=29.45 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCC-----CCCCCCCChHHHHHHH
Q 006666 53 EEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRW-----PSSRGGKGFTEVAKKV 127 (636)
Q Consensus 53 ~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kF-----Ps~~~~~Gmk~Lad~i 127 (636)
+.+.+......+.+.++|.++|+|||-|... +.....++.| |. ++.+++++
T Consensus 140 ~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~------------------~~~~is~~~~~e~~~p~------~k~i~~~i 195 (306)
T cd00465 140 EYLTEFILEYAKTLIEAGAKALQIHEPAFSQ------------------INSFLGPKMFKKFALPA------YKKVAEYK 195 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccccc------------------cCCCCCHHHHHHHHHHH------HHHHHHHH
Q ss_pred HHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHH
Q 006666 128 HAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (636)
Q Consensus 128 HskGLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~ 207 (636)
|..|.+.++|+.-+.. .++.
T Consensus 196 ~~~~~~~~lH~cg~~~------------------------------------------------------------~~~~ 215 (306)
T cd00465 196 AAGEVPIVHHSCYDAA------------------------------------------------------------DLLE 215 (306)
T ss_pred hhcCCceEEEECCCHH------------------------------------------------------------HHHH
Q ss_pred HHHhhCCCEEEecCCC-CCCCChHHHHHHHHHHHhcCCCeEEE
Q 006666 208 QYAEWGVDFVKHDCVF-GDDLDINEISFVSEVLKELDRPIVYS 249 (636)
Q Consensus 208 ~fa~WGVDylK~D~~~-~~~~~~~~~~am~~Al~~~GrpI~lS 249 (636)
.+++.|+|.+-+|+.. . +.++.+..|..+.+.
T Consensus 216 ~l~~~~~d~~~~d~~~~d----------~~~~~~~~~~~~~i~ 248 (306)
T cd00465 216 EMIQLGVDVISFDMTVNE----------PKEAIEKVGEKKTLV 248 (306)
T ss_pred HHHHhCcceEecccccCC----------HHHHHHHhCCCEEEE
No 146
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=25.78 E-value=1.4e+02 Score=31.71 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH----HHHHHHHHhcCCCeEEEcCC
Q 006666 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 199 q~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~----~am~~Al~~~GrpI~lSls~ 252 (636)
+.|++++++.+.++|+|-|=+|+-+..+.+.+.| +.++.++.+.|..+.+.+.|
T Consensus 89 ~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~~lsv~~~p 146 (313)
T cd02874 89 QRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTLSTAVVP 146 (313)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCcEEEEEecC
Confidence 4588999999999999999999865433333444 45666676666533333333
No 147
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=25.10 E-value=78 Score=29.69 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=30.1
Q ss_pred cccccccccCCCCCccccCCCcceEEeeeccccCCCCeeEEEEeCCCCcEEEEEE
Q 006666 517 KCKRDANQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFF 571 (636)
Q Consensus 517 ~c~~~~~q~~~~g~l~~~~s~~c~~v~~~~~~~~~~~~~vW~~~~~~g~~~va~f 571 (636)
.|++|..+++.+|+.+..-. ..+..++--...+|++||.++
T Consensus 72 ~CP~Hg~~Fd~tG~~~~gPa--------------~~~L~~y~V~vedg~I~V~~~ 112 (126)
T cd03471 72 KCPCHGSQYDATGKVVRGPA--------------PLSLALVHATVDDDKVVLSPW 112 (126)
T ss_pred EcCCCCCEECCCCCEecCCC--------------CCCCceEeEEEECCEEEEEEC
Confidence 49999999889999987521 234555555567789999887
No 148
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=25.06 E-value=3.5e+02 Score=23.82 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=35.8
Q ss_pred EEeCCCCc-EEEEEEeCCC-CCeEEEEecccccccCCCCCCCCCceeEEeccCCCccce-eccEEEEEEcCcceEEE
Q 006666 558 IATGREGE-IYVAFFNLNT-EKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGV-LQQTLSTAVGMHGCALF 631 (636)
Q Consensus 558 ~~~~~~g~-~~va~fN~~~-~~~~it~~l~dl~~~l~g~~~~~~~~~~~dlW~~~~~g~-~~~~~~~~v~~hg~~l~ 631 (636)
.+++.+|. +.++|=|.++ .....++.++..+.. . .-.+.||.+.++.-. -.+.+.+.+..--.++|
T Consensus 11 ~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~-~-------g~~v~dVlsc~~~tv~~~G~l~v~m~~G~P~Vl 79 (91)
T PF09260_consen 11 FRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFS-A-------GTEVTDVLSCTSYTVDSNGTLTVPMSNGEPRVL 79 (91)
T ss_dssp EEESSTTT-EEEEEE-S-T-T---EEEEESS-----T-------T-EEEETTTTEEEE--TTS-EEEEESTT--EEE
T ss_pred EEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCC-C-------CCEEEEEecCCEEEECCCCEEEEEEcCCceEEE
Confidence 34556664 6666677888 577899988876643 2 378899999987643 35677777766444443
No 149
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=25.04 E-value=2.8e+02 Score=29.80 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=46.8
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecccccc--c---ccCCccccCCCcccccCCCCcccCCCCCCCCCCCCC
Q 006666 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLWYR--R---KVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKG 119 (636)
Q Consensus 48 ~~ItE~~v~~~Ad~ma---~gL~~~GY~yi~IDdGW~~--~---~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~G 119 (636)
..+|+++|.+..+.++ +.++++||+-|.|-.+-.. . .+. . ....|+||--.-+.-||+
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~---~----N~R~D~yGgsl~nr~rf~------- 207 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPL---S----NKRTDEYGGSLENRMRFL------- 207 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCc---c----CCCCcccCCCHHHHhHHH-------
Confidence 4699999999998653 4577899999999753210 0 000 0 011366776555555666
Q ss_pred hHHHHHHHHHc---CCEEEEEe
Q 006666 120 FTEVAKKVHAM---GLKFGIHV 138 (636)
Q Consensus 120 mk~Lad~iHsk---GLKfGIy~ 138 (636)
..+++.|++. ++.+||=+
T Consensus 208 -~eiv~aIR~~vG~d~~v~vri 228 (336)
T cd02932 208 -LEVVDAVRAVWPEDKPLFVRI 228 (336)
T ss_pred -HHHHHHHHHHcCCCceEEEEE
Confidence 6777777764 45555533
No 150
>PRK06769 hypothetical protein; Validated
Probab=24.95 E-value=1.4e+02 Score=28.95 Aligned_cols=21 Identities=14% Similarity=-0.091 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHcCCEEEEEee
Q 006666 119 GFTEVAKKVHAMGLKFGIHVM 139 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfGIy~~ 139 (636)
|++.+.+++|++|.+.+|=++
T Consensus 32 gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 32 FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred CHHHHHHHHHHCCCEEEEEEC
Confidence 799999999999999999874
No 151
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=24.58 E-value=1.3e+02 Score=34.15 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006666 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 202 ~~s~~~~fa~WGVDylK~D~-~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls~ 252 (636)
+..++..++.=| ||||=|- +..+++.+ +++ +++++|-+++|+..+|..+-
T Consensus 175 ~a~~~y~~~~GG-D~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~Ni 231 (439)
T cd08211 175 FAEACYAFWLGG-DFIKNDEPQANQPFCPLKKVIPLVADAMRRAQDETGEAKLFSANI 231 (439)
T ss_pred HHHHHHHHHhcC-CccccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEecC
Confidence 344566677889 9999994 55566654 333 67888888999988887663
No 152
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=24.12 E-value=1.3e+02 Score=26.00 Aligned_cols=46 Identities=28% Similarity=0.473 Sum_probs=31.1
Q ss_pred ccccccCCcccccchhhhhccccccccc-cccc---cCCCCCccccCCCcceEEee
Q 006666 493 VGVCLDASPKWKLTSKELRRGSFSKCKR-DANQ---LNPSGALISSYSGLCATVNL 544 (636)
Q Consensus 493 ~~~C~~~~~~~~~~~~~~~~~~~~~c~~-~~~q---~~~~g~l~~~~s~~c~~v~~ 544 (636)
.+.||+...... ....-..|.- ..+| +.++|.+.+..+++|-.+..
T Consensus 45 ~~~Cl~~~~~~~------~~v~l~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~ 94 (117)
T smart00458 45 TDLCLTANGNTG------STVTLYSCDGDADNQYWTVNKDGTIRNPDSGLCLDVKD 94 (117)
T ss_pred CCccCccCCCCC------CEEEEEECCCCCcCCEEEECCCeeEEeCCCCEEEecCC
Confidence 567888755321 1123357876 7788 77789999888899977754
No 153
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=24.09 E-value=7e+02 Score=24.55 Aligned_cols=19 Identities=16% Similarity=-0.087 Sum_probs=17.1
Q ss_pred hHHHHHHHHHcCCEEEEEe
Q 006666 120 FTEVAKKVHAMGLKFGIHV 138 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~ 138 (636)
+..-.+..++.||++|+|.
T Consensus 40 ~~~n~~~A~~aGl~vG~Yh 58 (196)
T cd06415 40 ASAQVSSAIANGKMTGGYH 58 (196)
T ss_pred HHHHHHHHHHCCCeeEEEE
Confidence 7777888999999999997
No 154
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.96 E-value=5.8e+02 Score=26.64 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=35.6
Q ss_pred HHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcC
Q 006666 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 206 ~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls 251 (636)
++.++..|||||=+|.= +.+++.++...|-+|++..|-+.+.-+.
T Consensus 33 ~e~~a~~G~D~v~iD~E-Hg~~~~~~~~~~i~a~~~~g~~~lVRvp 77 (256)
T PRK10558 33 TEVLGLAGFDWLVLDGE-HAPNDVSTFIPQLMALKGSASAPVVRVP 77 (256)
T ss_pred HHHHHhcCCCEEEEccc-cCCCCHHHHHHHHHHHhhcCCCcEEECC
Confidence 57899999999999963 3467788888888888888876666654
No 155
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=23.66 E-value=1e+02 Score=29.92 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=42.4
Q ss_pred ccccccCCHHHHHHHHHHHHhccc-c-CCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChH
Q 006666 44 DSFCWTISEEEFLQSAEIISQRLR-P-HGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFT 121 (636)
Q Consensus 44 ~~~~~~ItE~~v~~~Ad~ma~gL~-~-~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk 121 (636)
++|....++++..++|+.+.+.++ . .+.-.+.||--+....... ...++ . -++
T Consensus 55 Yhf~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~~lD~E~~~~~~~~-------------~~~~~-------~-----~~~ 109 (181)
T PF01183_consen 55 YHFARATNSSDAEAQADYFLNQVKGGDPGDLPPALDVEDDKSNNPS-------------KSDNT-------A-----WVK 109 (181)
T ss_dssp EEE--TTTHCHHHHHHHHHHHCTHTSSTSCS-EEEEE-S-GGCCSS-------------HHHHH-------H-----HHH
T ss_pred EEEeccCCcccHHHHHHHHHHHhcccCCCcceEEEeccccccCCCC-------------HHHHH-------H-----HHH
Confidence 344444578899999998776663 2 2333467885543110000 00111 1 489
Q ss_pred HHHHHHHH-cCCEEEEEeecC
Q 006666 122 EVAKKVHA-MGLKFGIHVMRG 141 (636)
Q Consensus 122 ~Lad~iHs-kGLKfGIy~~pG 141 (636)
++.+.|++ .|.++|||..+-
T Consensus 110 ~f~~~~~~~~G~~~~iY~~~~ 130 (181)
T PF01183_consen 110 AFLDEVEKAAGYKPGIYTSKS 130 (181)
T ss_dssp HHHHHHHHHCTSEEEEEEEHH
T ss_pred HHHHHHHHHhCCceeEeecHH
Confidence 99999955 999999999763
No 156
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.64 E-value=2.3e+02 Score=30.92 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=47.4
Q ss_pred cccCCHHHHHHHHHHHH---hccccCCceEEEecccc--cccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChH
Q 006666 47 CWTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFT 121 (636)
Q Consensus 47 ~~~ItE~~v~~~Ad~ma---~gL~~~GY~yi~IDdGW--~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk 121 (636)
-..+|+++|.+..+.++ ..++++||+-|.|=.+- -...--....| --.|+||--.-|-.||+ .
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N----~R~D~yGGslenR~r~~--------~ 198 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSN----RRTDEWGGSLENRMRFP--------L 198 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccC----CCCcccCCcHHHHHHHH--------H
Confidence 35689999999998543 46788999999886532 10000000000 01367765444656777 5
Q ss_pred HHHHHHHHc-------CCEEEEEee
Q 006666 122 EVAKKVHAM-------GLKFGIHVM 139 (636)
Q Consensus 122 ~Lad~iHsk-------GLKfGIy~~ 139 (636)
.+++.|++. .+.+|+-+.
T Consensus 199 eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 199 AVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred HHHHHHHHHhccccCCCceEEEEEC
Confidence 677777663 455566543
No 157
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=23.61 E-value=4.1e+02 Score=29.90 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.8
Q ss_pred hHHHHHHHHHcCCEEEEEeecCc
Q 006666 120 FTEVAKKVHAMGLKFGIHVMRGI 142 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~~pGi 142 (636)
++.|+..+++.||.||||...++
T Consensus 103 vgela~Avr~qGL~FGvy~s~a~ 125 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSGAW 125 (430)
T ss_pred HHHHHHHHHHcCCeeeEeeccCc
Confidence 78999999999999999998654
No 158
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=23.60 E-value=1.7e+02 Score=30.11 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.3
Q ss_pred hHHHHHHHHHcCCEEEEEeec
Q 006666 120 FTEVAKKVHAMGLKFGIHVMR 140 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy~~p 140 (636)
|+.+++.+|++|+++-+|..|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~ 207 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTP 207 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccC
Confidence 788889999999999999754
No 159
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.55 E-value=1e+02 Score=31.06 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHcCCEEEEEeecCccccc
Q 006666 119 GFTEVAKKVHAMGLKFGIHVMRGISTQA 146 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfGIy~~pGi~~~a 146 (636)
-+..+.++||++|+|+||-+.|+++...
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~~~ 120 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPVEE 120 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-GGG
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCchH
Confidence 4789999999999999999999876543
No 160
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.30 E-value=3e+02 Score=29.70 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=47.0
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecccc--cccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHH
Q 006666 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (636)
Q Consensus 48 ~~ItE~~v~~~Ad~ma---~gL~~~GY~yi~IDdGW--~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~ 122 (636)
..+|+++|.+.++.++ +..+.+||+-|.|=.+= --..--....| --.|+||--.-|-.||+ ..
T Consensus 137 ~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N----~R~D~yGGslenR~rf~--------~E 204 (338)
T cd04733 137 RAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTN----KRTDEYGGSLENRARLL--------LE 204 (338)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCC----CCCccCCCCHHHHHHHH--------HH
Confidence 4689999999998553 46788999999886542 11000000000 01267765444666777 56
Q ss_pred HHHHHHHc-C--CEEEEEe
Q 006666 123 VAKKVHAM-G--LKFGIHV 138 (636)
Q Consensus 123 Lad~iHsk-G--LKfGIy~ 138 (636)
+++.|++. | +.+|+=+
T Consensus 205 iI~aIR~avG~d~~v~vri 223 (338)
T cd04733 205 IYDAIRAAVGPGFPVGIKL 223 (338)
T ss_pred HHHHHHHHcCCCCeEEEEE
Confidence 77777753 4 5566544
No 161
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=23.24 E-value=1.5e+02 Score=33.77 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCEEEec-CCCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006666 200 AFLRSLYQQYAEWGVDFVKHD-CVFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (636)
Q Consensus 200 ~y~~s~~~~fa~WGVDylK~D-~~~~~~~~~--~~~----~am~~Al~~~GrpI~lSls~ 252 (636)
+|-+-.++.+.. +||||=| .+...++.+ +++ +++++|-+++|+..+|..+.
T Consensus 175 ~~a~~~ye~~~G--gD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~Ni 232 (443)
T PRK13475 175 PFAEACYDFWLG--GDFIKNDEPQGNQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANI 232 (443)
T ss_pred HHHHHHHHHHhc--CCcccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccC
Confidence 333333444554 5999999 455566654 333 57888888999987777653
No 162
>PRK08005 epimerase; Validated
Probab=23.05 E-value=8.1e+02 Score=24.92 Aligned_cols=108 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006666 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (636)
Q Consensus 51 tE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHsk 130 (636)
+...+.+.++. |.++|.+++.+| .|| |.++|| +.= |.+-+..--+.-
T Consensus 11 d~~~l~~el~~----l~~~g~d~lHiD-------------------vMD--G~FVPN---~tf-----G~~~i~~l~~~t 57 (210)
T PRK08005 11 DPLRYAEALTA----LHDAPLGSLHLD-------------------IED--TSFINN---ITF-----GMKTIQAVAQQT 57 (210)
T ss_pred CHHHHHHHHHH----HHHCCCCEEEEe-------------------ccC--CCcCCc---ccc-----CHHHHHHHHhcC
Q ss_pred CCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHHHH
Q 006666 131 GLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA 210 (636)
Q Consensus 131 GLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~fa 210 (636)
.+.+=+|.|- ++|+ .+++.|+
T Consensus 58 ~~~~DvHLMv-----------------------------------------------------~~P~------~~i~~~~ 78 (210)
T PRK08005 58 RHPLSFHLMV-----------------------------------------------------SSPQ------RWLPWLA 78 (210)
T ss_pred CCCeEEEecc-----------------------------------------------------CCHH------HHHHHHH
Q ss_pred hhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCCC
Q 006666 211 EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTG 255 (636)
Q Consensus 211 ~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls~g~~ 255 (636)
+-|.|+|=+-. ........+-+.+++.|-..-+.++|+.+
T Consensus 79 ~~gad~It~H~-----Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp 118 (210)
T PRK08005 79 AIRPGWIFIHA-----ESVQNPSEILADIRAIGAKAGLALNPATP 118 (210)
T ss_pred HhCCCEEEEcc-----cCccCHHHHHHHHHHcCCcEEEEECCCCC
No 163
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.94 E-value=2.2e+02 Score=30.97 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=13.3
Q ss_pred hHHHHHHHHHcCCEE
Q 006666 120 FTEVAKKVHAMGLKF 134 (636)
Q Consensus 120 mk~Lad~iHskGLKf 134 (636)
++.|.+|++++|+.|
T Consensus 79 ~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 79 HKELFERAKELGLTI 93 (327)
T ss_pred HHHHHHHHHHhCCcE
Confidence 578999999999988
No 164
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=22.85 E-value=8.3e+02 Score=25.00 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006666 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (636)
Q Consensus 51 tE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHsk 130 (636)
+...+.+.++. |.+.|.+++.+| .|| |.++|| -.|. ..+++.|++.
T Consensus 14 d~~~l~~~i~~----l~~~g~d~lHiD-------------------imD--G~FVPN-~tfg--------~~~i~~lr~~ 59 (223)
T PRK08745 14 DFARLGEEVDN----VLKAGADWVHFD-------------------VMD--NHYVPN-LTIG--------PMVCQALRKH 59 (223)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEEe-------------------ccc--CccCCC-cccC--------HHHHHHHHhh
Q ss_pred --CCEEEEEeecCccccccCCCCcccccccCCcccccCcccchhhcccccccccccCCCceeecCCchHHHHHHHHHHHH
Q 006666 131 --GLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (636)
Q Consensus 131 --GLKfGIy~~pGi~~~av~~~spi~gt~~g~~y~~~g~~~~~~Di~~~~~~c~~~~~~~~~lD~t~p~aq~y~~s~~~~ 208 (636)
.+.+=+|.|- ++|. ..++.
T Consensus 60 ~~~~~~dvHLMv-----------------------------------------------------~~P~------~~i~~ 80 (223)
T PRK08745 60 GITAPIDVHLMV-----------------------------------------------------EPVD------RIVPD 80 (223)
T ss_pred CCCCCEEEEecc-----------------------------------------------------CCHH------HHHHH
Q ss_pred HHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCCC
Q 006666 209 YAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTG 255 (636)
Q Consensus 209 fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls~g~~ 255 (636)
|++-|.|+|=+-. ........+-+.|++.|-..-+.++|+.+
T Consensus 81 ~~~~gad~I~~H~-----Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~ 122 (223)
T PRK08745 81 FADAGATTISFHP-----EASRHVHRTIQLIKSHGCQAGLVLNPATP 122 (223)
T ss_pred HHHhCCCEEEEcc-----cCcccHHHHHHHHHHCCCceeEEeCCCCC
No 165
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=22.70 E-value=96 Score=30.73 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHcCCEEEEEeecC
Q 006666 119 GFTEVAKKVHAMGLKFGIHVMRG 141 (636)
Q Consensus 119 Gmk~Lad~iHskGLKfGIy~~pG 141 (636)
-++.+.+.|++.|.++|||+.+-
T Consensus 109 ~~~~f~~~v~~~G~~~~iYt~~~ 131 (196)
T cd06415 109 AILAFMDTIKDAGYKPMLYSYKP 131 (196)
T ss_pred HHHHHHHHHHHhCCCcEEEecHH
Confidence 47889999999999999998763
No 166
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=22.66 E-value=1.5e+02 Score=30.91 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHHHHhhCCCEEEecCC
Q 006666 206 YQQYAEWGVDFVKHDCV 222 (636)
Q Consensus 206 ~~~fa~WGVDylK~D~~ 222 (636)
++.+.+||||.|=.|++
T Consensus 266 ~~~l~~~GVdgIiTD~~ 282 (282)
T cd08605 266 VERQADLGVDGVIVDHV 282 (282)
T ss_pred HHHHHHcCCCEEEeCCC
Confidence 57889999999988863
No 167
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=22.66 E-value=1.2e+02 Score=28.00 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006666 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (636)
Q Consensus 51 tE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~Lad~iHsk 130 (636)
|-+........+++.+++.|.+-++.|-| | -+|=+ -+++|+|-+.+.
T Consensus 64 n~~aA~~vG~~la~ra~~~gi~~vvfDrg-------g---------------------~~YhG-----rv~A~a~~aRe~ 110 (114)
T TIGR00060 64 NKDAAKKVGKLVAERLKEKGIKDVVFDRG-------G---------------------YKYHG-----RVAALAEAAREA 110 (114)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCC-------C---------------------CcchH-----HHHHHHHHHHHh
Confidence 34455556667788889999999999832 1 12322 499999999999
Q ss_pred CCEE
Q 006666 131 GLKF 134 (636)
Q Consensus 131 GLKf 134 (636)
||+|
T Consensus 111 Gl~F 114 (114)
T TIGR00060 111 GLNF 114 (114)
T ss_pred CCCC
Confidence 9987
No 168
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.61 E-value=4e+02 Score=28.99 Aligned_cols=50 Identities=28% Similarity=0.506 Sum_probs=31.2
Q ss_pred cccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCC-CCCCCChHHHHHHHHHcCCEEEE
Q 006666 66 LRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPS-SRGGKGFTEVAKKVHAMGLKFGI 136 (636)
Q Consensus 66 L~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs-~~~~~Gmk~Lad~iHskGLKfGI 136 (636)
||++|.+||-|= -|-.+. |++|. .+-. ..+-.++-+++.+.+..|||.=+
T Consensus 72 LK~~GvNyvRlR-vwndP~--------------dsngn------~yggGnnD~~k~ieiakRAk~~GmKVl~ 122 (403)
T COG3867 72 LKNHGVNYVRLR-VWNDPY--------------DSNGN------GYGGGNNDLKKAIEIAKRAKNLGMKVLL 122 (403)
T ss_pred HHHcCcCeEEEE-EecCCc--------------cCCCC------ccCCCcchHHHHHHHHHHHHhcCcEEEe
Confidence 789999999885 475431 22221 1110 01112578899999999999754
No 169
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=22.51 E-value=2.7e+02 Score=31.49 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=42.6
Q ss_pred CCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCC----------CCChHHH----HHHHHHHHhc----CCCeE
Q 006666 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGD----------DLDINEI----SFVSEVLKEL----DRPIV 247 (636)
Q Consensus 186 ~~~~~lD~t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~----------~~~~~~~----~am~~Al~~~----GrpI~ 247 (636)
++|+..=.++..-+.|.++.++.++.|+||.|-+|+=++. +.+.+.| +.+|++|.+. ||...
T Consensus 140 ~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~ 219 (441)
T COG3325 140 GGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQ 219 (441)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhhcccccCceEE
Confidence 4554332333444568899999999999999999986531 1234555 4466667654 56666
Q ss_pred EEcC
Q 006666 248 YSLS 251 (636)
Q Consensus 248 lSls 251 (636)
|++-
T Consensus 220 LTiA 223 (441)
T COG3325 220 LTIA 223 (441)
T ss_pred EEEe
Confidence 6664
No 170
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=22.42 E-value=1.4e+02 Score=31.23 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.2
Q ss_pred HHHHHhhCCCEEEecCC
Q 006666 206 YQQYAEWGVDFVKHDCV 222 (636)
Q Consensus 206 ~~~fa~WGVDylK~D~~ 222 (636)
++.+.+||||.|--|.+
T Consensus 274 ~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 274 RKKLKELGVDGLIYDRI 290 (290)
T ss_pred HHHHHHcCCCEEEecCC
Confidence 57788999999988863
No 171
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=22.08 E-value=57 Score=30.37 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=22.4
Q ss_pred CchhHHHHHHHHHHHHHHhhhcccccccCCCCCCCCceEecCcccc
Q 006666 1 MEIFVLNLSAVCLYLAFLLHRVSSISEAVPVRASSPPRGWNSYDSF 46 (636)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~tPPmGWNSW~~~ 46 (636)
|.+++++||.|.| +|+..+...-.......+.-+++.+|.|++.
T Consensus 1 m~~~~~~~vlv~l--a~~~~~~~~~Cp~~~r~~~~~~~~~C~YYC~ 44 (120)
T PF07771_consen 1 MGLTVVTLVLVSL--AFFGSAAAHGCPDKTRPASDTNREGCNYYCW 44 (120)
T ss_pred CcceeehhhHHhH--HhhhhhhhhcCCCCCcCCCCCCCCCcEEEcC
Confidence 6666666665544 4433322222222223444556678887664
No 172
>PRK07534 methionine synthase I; Validated
Probab=22.06 E-value=2.5e+02 Score=30.63 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcC
Q 006666 194 KLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 194 t~p~aq~y~~s~~~~fa~WGVDylK~D~~~~~~~~~~~~~am~~Al~~~GrpI~lSls 251 (636)
+..+.++++...++.|.+=|||+|=+--+ .+..|.+++.+++++.+.|+++|++
T Consensus 125 ~~~e~~~~~~~qi~~l~~~gvD~l~~ET~----p~l~E~~a~~~~~~~~~~Pv~vSft 178 (336)
T PRK07534 125 THALAVEAFHEQAEGLKAGGADVLWVETI----SAPEEIRAAAEAAKLAGMPWCGTMS 178 (336)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecc----CCHHHHHHHHHHHHHcCCeEEEEEE
Confidence 44456777777888999999999887643 3467888999999989999999986
No 173
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=21.98 E-value=1.8e+02 Score=30.87 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCCC-CCChHHH----HHHHHHHHh----cC-CCeEEEcC
Q 006666 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGD-DLDINEI----SFVSEVLKE----LD-RPIVYSLS 251 (636)
Q Consensus 198 aq~y~~s~~~~fa~WGVDylK~D~~~~~-~~~~~~~----~am~~Al~~----~G-rpI~lSls 251 (636)
-+.|++++++.+.++|+|.|=+|+-+.. +.+.+.+ +.+++++.+ .| ...++++.
T Consensus 93 R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~a 156 (299)
T cd02879 93 RKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAA 156 (299)
T ss_pred HHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEee
Confidence 4668899999999999999999987642 2233333 567777763 34 35777765
No 174
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.91 E-value=1.3e+02 Score=29.27 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=43.2
Q ss_pred ccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHH
Q 006666 44 DSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEV 123 (636)
Q Consensus 44 ~~~~~~ItE~~v~~~Ad~ma~gL~~~GY~yi~IDdGW~~~~~~g~~~~~~~~~~~D~~G~l~pd~~kFPs~~~~~Gmk~L 123 (636)
++|.+..+.++..++|+.+-+.++. .-.++.+|--. .. + ..... .++++
T Consensus 58 Yhf~~~~~~~~a~~eA~~f~~~~~~-~~~~~~lD~E~--~~-----------------~------~~~~~-----~~~~f 106 (177)
T cd06523 58 YAFARGTSTADAKAEARDFYNRANK-KPTFYVLDVEV--TS-----------------M------SDMNA-----GVQAF 106 (177)
T ss_pred EEEeccCCHHHHHHHHHHHHHHhcC-CCceEEEeecc--CC-----------------c------chHHH-----HHHHH
Confidence 3455556777888999876555554 34567788321 10 0 01112 68999
Q ss_pred HHHHHHcCC-EEEEEeecC
Q 006666 124 AKKVHAMGL-KFGIHVMRG 141 (636)
Q Consensus 124 ad~iHskGL-KfGIy~~pG 141 (636)
.+.|+..|. ++|||+...
T Consensus 107 ~~~v~~~g~~~~~lYt~~~ 125 (177)
T cd06523 107 ISELRRLGAKKVGLYIGHH 125 (177)
T ss_pred HHHHHHccCCcEEEEchHH
Confidence 999999987 689998763
No 175
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.97 E-value=7e+02 Score=27.34 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=34.3
Q ss_pred HHHHHHHHHH--hhCCCEEEecCCCCC-----------CCChHH-HHHHHHHHHhcCCCeEEE
Q 006666 201 FLRSLYQQYA--EWGVDFVKHDCVFGD-----------DLDINE-ISFVSEVLKELDRPIVYS 249 (636)
Q Consensus 201 y~~s~~~~fa--~WGVDylK~D~~~~~-----------~~~~~~-~~am~~Al~~~GrpI~lS 249 (636)
.+..-++.++ +.|+|.||+.+.... .|+.++ .+.+++..+.++.|+++.
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEE
Confidence 4556678888 599999999975321 123333 356888888899997765
No 176
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=20.43 E-value=1.8e+02 Score=31.45 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCCCCC-----CChHHH----HHHHHHHHhcCCCeEEEcC
Q 006666 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD-----LDINEI----SFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 199 q~y~~s~~~~fa~WGVDylK~D~~~~~~-----~~~~~~----~am~~Al~~~GrpI~lSls 251 (636)
+.|++++++.+.++|+|-|=+|+-+... .+.+.+ +.+++++.+.++..++++.
T Consensus 98 ~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 98 KTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred HHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 4588999999999999999999865321 122333 5677777777556677765
No 177
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.27 E-value=3.8e+02 Score=26.25 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=27.1
Q ss_pred HHHHHhhCCCEEEecCCCCCC-----CChHHHHHHHHHHHhcCCCeEEE
Q 006666 206 YQQYAEWGVDFVKHDCVFGDD-----LDINEISFVSEVLKELDRPIVYS 249 (636)
Q Consensus 206 ~~~fa~WGVDylK~D~~~~~~-----~~~~~~~am~~Al~~~GrpI~lS 249 (636)
+..+..+.+||||+|.-.-.. ....-++.+....+..|-+++..
T Consensus 160 ~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 160 LSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred HHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 467888999999999532111 11222455666666677676665
No 178
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.25 E-value=3.9e+02 Score=26.25 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=16.0
Q ss_pred hHHHHHHHHHcCCEEEEE
Q 006666 120 FTEVAKKVHAMGLKFGIH 137 (636)
Q Consensus 120 mk~Lad~iHskGLKfGIy 137 (636)
++.+.++++++|+++|+-
T Consensus 91 ~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 688999999999999984
No 179
>PRK06233 hypothetical protein; Provisional
Probab=20.14 E-value=1.8e+02 Score=31.96 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=26.6
Q ss_pred ccccCCHHHHHHHHHHHH---hccccCCceEEEecccccc
Q 006666 46 FCWTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLWYR 82 (636)
Q Consensus 46 ~~~~ItE~~v~~~Ad~ma---~gL~~~GY~yi~IDdGW~~ 82 (636)
|+.+ .|+-+.+.|+++. +.|.++|.+||+||+.-..
T Consensus 158 ~Y~~-~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~ 196 (372)
T PRK06233 158 FYDS-WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWA 196 (372)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHH
Confidence 4443 3667778888775 3588999999999997643
No 180
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.07 E-value=5.4e+02 Score=26.55 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHHHHhhCCCEEEecCCCCCCC-----ChHHHHHHHHHHHhcCCCeEEEcC
Q 006666 206 YQQYAEWGVDFVKHDCVFGDDL-----DINEISFVSEVLKELDRPIVYSLS 251 (636)
Q Consensus 206 ~~~fa~WGVDylK~D~~~~~~~-----~~~~~~am~~Al~~~GrpI~lSls 251 (636)
+..+++.-|||||+|-.+-... +..-++.+-...++.|-.++..-.
T Consensus 164 l~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV 214 (256)
T COG2200 164 LSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV 214 (256)
T ss_pred HHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec
Confidence 5678899999999994321111 112245666666777777766543
Done!