BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006667
(636 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 48 GPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTLLE 100
G + +GKT + + + +A++ MD+Y + N+D P D LE
Sbjct: 13 GGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLE 72
Query: 101 NIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSV 159
+ + L G V++P+YDF++ +R RT P+ +VI+EGI L K LR L+DL+V V
Sbjct: 73 HAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAP-VVILEGILVLYPKELRDLMDLKVFV 131
Query: 160 TGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 219
++R+ RD+ G+ E ++ Q E V PM+ F+EP + A + +
Sbjct: 132 DADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPR----- 186
Query: 220 TGFQNP 225
G QNP
Sbjct: 187 -GGQNP 191
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 19/183 (10%)
Query: 48 GPSGAGKTVFTEKVLNFM---------PSIAVITMDNY------NDSSRIIDG--NFDDP 90
G + +GK+ K++ + + +++ D++ ++ + G NFD P
Sbjct: 27 GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHP 86
Query: 91 RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKL 149
D + +L+ ++ + EGK VQ+P+YDF S SR T+ V + +V+ EGI A S+++
Sbjct: 87 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSR-KEETVTVYPADVVLFEGILAFYSQEV 145
Query: 150 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH 209
R L +++ V L +RV RDI G++ E+I+ Q V P ++ F P + A
Sbjct: 146 RDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD 205
Query: 210 IKI 212
+ I
Sbjct: 206 VII 208
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 19/183 (10%)
Query: 48 GPSGAGKTVFTEKVLNFM---------PSIAVITMDNY------NDSSRIIDG--NFDDP 90
G + +GK+ K++ + + +++ D++ ++ + G NFD P
Sbjct: 29 GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHP 88
Query: 91 RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKL 149
D + +L+ ++ + EGK VQ+P+YDF S SR T+ V + +V+ EGI A S+++
Sbjct: 89 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSR-KEETVTVYPADVVLFEGILAFYSQEV 147
Query: 150 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH 209
R L +++ V L +RV RDI G++ E+I+ Q V P ++ F P + A
Sbjct: 148 RDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD 207
Query: 210 IKI 212
+ I
Sbjct: 208 VII 210
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 20/183 (10%)
Query: 48 GPSGAGKTVFTEKVLNFMP---------SIAVITMDNY------NDSSRIIDG--NFDDP 90
G + +GK+ EK++ + + +++ D + ++ + G NFD P
Sbjct: 32 GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHP 91
Query: 91 RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKL 149
D D + ++ + EGK V+VP YDF + SR+ T+ P+ +V+ EGI S+++
Sbjct: 92 DAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPAD-VVLFEGILVFYSQEI 150
Query: 150 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH 209
R + LR+ V L +RV RD++R G++ E+I+ Q + V P ++ F P + A
Sbjct: 151 RDMFHLRLFVDTDSDVRLSRRVLRDVRR-GRDLEQILTQYTTFVKPAFEEFCLPTKKYAD 209
Query: 210 IKI 212
+ I
Sbjct: 210 VII 212
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 102 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 161
R LK + +P YD ++ + RT+ + S + IEG++ ++ RP D
Sbjct: 94 FRQLKASHQLTLPFYDHETDTH-SKRTVYLSDSDXIXIEGVFLQRKEWRPFFDF------ 146
Query: 162 GVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKA 199
V+ D + + R +E +++ I + + +KA
Sbjct: 147 VVYLDCPREI-----RFARENDQVKQNIQKFINRYWKA 179
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 100
G SGAGKTV T++V+ + +IA + S + G +D ++ + LLE
Sbjct: 176 GESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLED-QIISANPLLE 227
>pdb|3RHG|A Chain A, Crystal Structure Of Amidohydrolase Pmi1525 (Target
Efi-500319) From Proteus Mirabilis Hi4320
Length = 365
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 356 GRDRLYVKYVGEQLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPK 415
GRD +K V E G++ YIE+ + ++L +D+ A+ + +L+I D
Sbjct: 102 GRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGID------ 155
Query: 416 EALSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVNNRRFDGRTPESPA 468
D R + + F EKN + A +A NN + P
Sbjct: 156 ------GTDIRAGMIGEIGVSPFFTDGEKNSLRAAALAQNNNPYASMNIHMPG 202
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 100
G SGAGKTV T +V+ + +IA + S + G +D ++ + LLE
Sbjct: 179 GESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLED-QIISANPLLE 230
>pdb|3IBP|A Chain A, The Crystal Structure Of The Dimerization Domain Of
Escherichia Coli Structural Maintenance Of Chromosomes
Protein Mukb
Length = 302
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 433 SISNSFSNQREKNLTKLARVAVNNRRFDGRTPESPASLANQGVINQLSEQISTLNERMDE 492
S+S+S SN RE+ R +P LA Q +NQLSEQ +E
Sbjct: 7 SLSDSVSNAREERXALRQEQEQLQSRIQSLXQRAPVWLAAQNSLNQLSEQCG------EE 60
Query: 493 FTS 495
FTS
Sbjct: 61 FTS 63
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 100
G SGAGKTV T +V+ + +IA + S + G +D ++ + LLE
Sbjct: 176 GESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLED-QIISANPLLE 227
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVI 71
G SGAGKTV T++V+ + IA I
Sbjct: 178 GESGAGKTVNTKRVIQYFAVIAAI 201
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 89
G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 176 GESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 217
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 89
G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 171 GESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 212
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 239 EIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP--F 296
E + K E T +D LLP G PD YLR NR + ++V F
Sbjct: 70 EASVTIDKSIDEVTPAEFDALLLPGGHSPD----YLRGDNR---FVTFTRDFVNSGKPVF 122
Query: 297 IISPRITFEVSVRLLGG--LMALGYTIATILKRSSHIFYDDRVCVKTDWL 344
I +S ++ G L A+ I + K + FYD V V D L
Sbjct: 123 AICHGPQLLISADVIRGRKLTAVKPIIIDV-KNAGAEFYDQEVVVDKDQL 171
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 89
G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 176 GESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 217
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 89
G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 176 GESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 217
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 89
G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 172 GESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,469,905
Number of Sequences: 62578
Number of extensions: 724719
Number of successful extensions: 2048
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2030
Number of HSP's gapped (non-prelim): 30
length of query: 636
length of database: 14,973,337
effective HSP length: 105
effective length of query: 531
effective length of database: 8,402,647
effective search space: 4461805557
effective search space used: 4461805557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)