Query 006667
Match_columns 636
No_of_seqs 313 out of 1766
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 12:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 5E-182 1E-186 1492.0 49.4 630 1-634 1-655 (656)
2 COG0572 Udk Uridine kinase [Nu 100.0 2.5E-43 5.3E-48 351.6 16.8 192 42-245 9-209 (218)
3 PTZ00301 uridine kinase; Provi 100.0 5.6E-38 1.2E-42 312.4 16.5 194 40-245 2-208 (210)
4 PF00485 PRK: Phosphoribulokin 100.0 1.8E-35 3.8E-40 287.8 14.3 171 43-215 1-188 (194)
5 cd02029 PRK_like Phosphoribulo 100.0 4.4E-34 9.6E-39 293.4 15.7 170 43-214 1-201 (277)
6 KOG4203 Armadillo/beta-Catenin 100.0 1.4E-33 3E-38 309.8 8.9 395 40-594 43-463 (473)
7 cd02028 UMPK_like Uridine mono 100.0 1.1E-31 2.3E-36 260.1 14.6 169 43-213 1-178 (179)
8 PRK15453 phosphoribulokinase; 100.0 1.5E-30 3.3E-35 269.0 16.2 171 41-213 5-206 (290)
9 PRK05480 uridine/cytidine kina 100.0 2.3E-30 5.1E-35 253.7 16.6 194 40-245 5-207 (209)
10 PLN02348 phosphoribulokinase 100.0 2.6E-30 5.6E-35 277.2 18.1 169 42-213 50-242 (395)
11 cd02025 PanK Pantothenate kina 100.0 1.2E-30 2.6E-35 260.8 14.1 173 43-215 1-210 (220)
12 TIGR00235 udk uridine kinase. 100.0 2.9E-28 6.3E-33 239.5 16.7 176 39-215 4-188 (207)
13 cd02023 UMPK Uridine monophosp 100.0 4.7E-28 1E-32 235.2 16.2 174 43-217 1-183 (198)
14 PRK05439 pantothenate kinase; 100.0 1.3E-27 2.8E-32 250.8 17.5 175 41-215 86-298 (311)
15 TIGR00554 panK_bact pantothena 99.9 1.3E-27 2.7E-32 248.8 15.5 175 41-215 62-278 (290)
16 COG1437 CyaB Adenylate cyclase 99.9 1.9E-27 4.1E-32 230.3 15.5 148 237-388 13-177 (178)
17 cd02026 PRK Phosphoribulokinas 99.9 2.8E-26 6.1E-31 236.6 15.8 168 43-213 1-175 (273)
18 PRK07429 phosphoribulokinase; 99.9 1.6E-25 3.4E-30 236.7 17.5 170 42-214 9-185 (327)
19 TIGR00318 cyaB adenylyl cyclas 99.9 1.9E-24 4E-29 209.3 16.4 146 237-385 13-173 (174)
20 PRK06696 uridine kinase; Valid 99.9 2E-24 4.3E-29 215.1 15.1 174 41-215 22-210 (223)
21 cd02024 NRK1 Nicotinamide ribo 99.9 8E-25 1.7E-29 214.9 10.1 158 43-200 1-179 (187)
22 PRK09270 nucleoside triphospha 99.9 2.7E-22 5.8E-27 200.6 15.9 173 41-216 33-222 (229)
23 PRK07667 uridine kinase; Provi 99.9 5.7E-22 1.2E-26 193.8 13.2 161 42-212 18-192 (193)
24 cd07890 CYTH-like_AC_IV-like A 99.8 9.5E-19 2.1E-23 167.8 14.8 144 237-383 11-169 (169)
25 PRK06547 hypothetical protein; 99.8 8.6E-19 1.9E-23 169.9 13.7 152 38-212 12-170 (172)
26 PRK08233 hypothetical protein; 99.7 3.4E-17 7.4E-22 155.2 14.5 165 41-246 3-177 (182)
27 COG1072 CoaA Panthothenate kin 99.7 1.8E-16 3.8E-21 163.4 13.9 172 41-214 82-270 (283)
28 PLN03046 D-glycerate 3-kinase; 99.7 3.1E-16 6.8E-21 170.1 15.1 161 42-203 213-431 (460)
29 KOG3308 Uncharacterized protei 99.6 4.1E-16 9E-21 154.4 5.1 168 42-215 5-187 (225)
30 PLN02796 D-glycerate 3-kinase 99.6 1.2E-14 2.7E-19 154.8 13.3 159 42-201 101-317 (347)
31 cd02022 DPCK Dephospho-coenzym 99.6 5E-15 1.1E-19 143.1 7.7 160 43-218 1-177 (179)
32 PRK14730 coaE dephospho-CoA ki 99.4 3E-13 6.6E-18 133.3 8.7 160 42-216 2-179 (195)
33 cd07762 CYTH-like_Pase_1 Uncha 99.4 2.1E-12 4.6E-17 126.3 14.0 118 252-375 26-171 (180)
34 KOG2702 Predicted panthothenat 99.4 4.5E-13 9.7E-18 135.5 8.9 174 37-212 115-318 (323)
35 PF01928 CYTH: CYTH domain; I 99.4 3.3E-12 7.2E-17 122.8 11.9 134 249-384 29-183 (185)
36 PRK14732 coaE dephospho-CoA ki 99.4 5.2E-13 1.1E-17 132.1 6.2 160 43-218 1-177 (196)
37 PF01121 CoaE: Dephospho-CoA k 99.4 5.3E-13 1.2E-17 130.7 6.1 158 43-216 2-176 (180)
38 PRK13477 bifunctional pantoate 99.4 1.7E-12 3.6E-17 145.1 10.8 171 40-215 283-486 (512)
39 PRK00081 coaE dephospho-CoA ki 99.4 1.2E-12 2.7E-17 128.5 8.5 159 42-216 3-178 (194)
40 PRK14734 coaE dephospho-CoA ki 99.4 2.1E-12 4.5E-17 127.9 9.8 163 42-218 2-181 (200)
41 cd02020 CMPK Cytidine monophos 99.4 3.1E-12 6.8E-17 116.8 10.1 143 43-213 1-145 (147)
42 PRK03333 coaE dephospho-CoA ki 99.3 1.6E-12 3.6E-17 141.0 7.6 256 42-323 2-288 (395)
43 cd07758 ThTPase Thiamine Triph 99.3 2.2E-11 4.8E-16 120.7 12.4 120 251-375 28-181 (196)
44 PTZ00451 dephospho-CoA kinase; 99.3 9.1E-12 2E-16 127.6 9.7 166 42-218 2-194 (244)
45 PRK06217 hypothetical protein; 99.3 3.1E-11 6.7E-16 116.9 12.6 107 43-179 3-110 (183)
46 PRK14733 coaE dephospho-CoA ki 99.3 1.8E-11 3.9E-16 122.4 10.7 158 42-216 7-182 (204)
47 PF13207 AAA_17: AAA domain; P 99.3 3.8E-12 8.2E-17 113.5 5.2 116 43-182 1-119 (121)
48 TIGR00152 dephospho-CoA kinase 99.3 8.1E-12 1.8E-16 121.2 7.3 162 43-218 1-179 (188)
49 PLN02422 dephospho-CoA kinase 99.2 1.7E-11 3.6E-16 124.8 8.6 162 42-217 2-180 (232)
50 PRK14731 coaE dephospho-CoA ki 99.2 3.7E-11 7.9E-16 119.4 9.6 162 42-217 6-188 (208)
51 PRK07261 topology modulation p 99.2 3.8E-11 8.2E-16 115.9 7.5 124 43-201 2-127 (171)
52 PRK08118 topology modulation p 99.2 9.8E-11 2.1E-15 112.8 10.1 105 43-182 3-108 (167)
53 PRK06762 hypothetical protein; 99.1 8.7E-10 1.9E-14 104.3 12.9 121 41-190 2-132 (166)
54 COG0237 CoaE Dephospho-CoA kin 99.0 7.7E-10 1.7E-14 110.5 7.1 162 41-219 2-180 (201)
55 PRK04182 cytidylate kinase; Pr 99.0 4.6E-09 1E-13 99.3 11.8 148 43-215 2-156 (180)
56 COG4240 Predicted kinase [Gene 99.0 1.8E-09 4E-14 109.6 9.3 162 43-205 52-273 (300)
57 TIGR02173 cyt_kin_arch cytidyl 99.0 3.3E-09 7.2E-14 99.7 10.3 147 43-214 2-155 (171)
58 COG1102 Cmk Cytidylate kinase 99.0 1.4E-09 3E-14 105.5 7.5 145 43-213 2-153 (179)
59 PRK01184 hypothetical protein; 98.9 2.9E-09 6.2E-14 102.5 9.0 155 42-216 2-163 (184)
60 COG3954 PrkB Phosphoribulokina 98.9 7E-09 1.5E-13 103.2 9.4 170 41-212 5-205 (289)
61 PRK00023 cmk cytidylate kinase 98.9 6.7E-09 1.5E-13 104.8 8.8 168 41-213 4-202 (225)
62 TIGR00017 cmk cytidylate kinas 98.8 1.1E-08 2.4E-13 103.0 9.5 163 42-213 3-199 (217)
63 COG0283 Cmk Cytidylate kinase 98.8 5.8E-08 1.3E-12 98.0 13.2 164 42-213 5-199 (222)
64 KOG3220 Similar to bacterial d 98.8 1E-08 2.2E-13 102.4 7.1 164 42-219 2-182 (225)
65 PRK09518 bifunctional cytidyla 98.8 5.1E-08 1.1E-12 113.3 13.8 166 43-215 3-213 (712)
66 PRK14737 gmk guanylate kinase; 98.8 2.6E-08 5.6E-13 98.0 9.4 157 40-215 3-169 (186)
67 KOG2878 Predicted kinase [Gene 98.7 6.9E-08 1.5E-12 96.8 11.4 159 42-201 32-253 (282)
68 PRK08356 hypothetical protein; 98.7 5.5E-08 1.2E-12 95.3 10.1 163 39-215 3-176 (195)
69 PRK11860 bifunctional 3-phosph 98.7 7.8E-08 1.7E-12 111.0 12.3 167 42-214 443-636 (661)
70 PRK05541 adenylylsulfate kinas 98.6 8.9E-08 1.9E-12 91.7 7.2 139 41-215 7-154 (176)
71 TIGR01359 UMP_CMP_kin_fam UMP- 98.6 2.7E-07 5.8E-12 88.4 10.2 35 43-78 1-35 (183)
72 PRK04040 adenylate kinase; Pro 98.6 2.2E-07 4.8E-12 91.6 9.8 155 41-215 2-172 (188)
73 cd02019 NK Nucleoside/nucleoti 98.6 1E-07 2.2E-12 79.1 6.3 57 43-161 1-63 (69)
74 cd07891 CYTH-like_CthTTM-like_ 98.6 2.2E-07 4.7E-12 88.8 8.9 83 270-359 33-119 (148)
75 PLN02200 adenylate kinase fami 98.6 1.8E-07 3.9E-12 95.2 8.4 118 41-174 43-167 (234)
76 TIGR01360 aden_kin_iso1 adenyl 98.6 4.3E-07 9.4E-12 86.7 10.5 36 41-77 3-38 (188)
77 TIGR03263 guanyl_kin guanylate 98.5 5.7E-07 1.2E-11 85.9 11.0 158 42-215 2-165 (180)
78 TIGR02322 phosphon_PhnN phosph 98.5 1.6E-06 3.4E-11 83.1 13.7 25 42-66 2-26 (179)
79 PRK03839 putative kinase; Prov 98.5 6.3E-07 1.4E-11 86.2 10.1 97 43-172 2-98 (180)
80 COG0194 Gmk Guanylate kinase [ 98.5 6.1E-07 1.3E-11 89.0 9.8 154 40-215 3-167 (191)
81 PF00625 Guanylate_kin: Guanyl 98.5 4E-07 8.8E-12 88.1 8.2 154 41-215 2-167 (183)
82 PRK00131 aroK shikimate kinase 98.5 2.9E-07 6.2E-12 86.4 6.6 36 41-77 4-39 (175)
83 PF13238 AAA_18: AAA domain; P 98.4 5.5E-08 1.2E-12 86.4 1.0 107 44-173 1-112 (129)
84 PRK12269 bifunctional cytidyla 98.4 7.7E-07 1.7E-11 105.4 10.6 77 136-215 191-267 (863)
85 PRK00300 gmk guanylate kinase; 98.4 2.8E-06 6E-11 83.0 11.9 160 40-215 4-169 (205)
86 PRK14530 adenylate kinase; Pro 98.4 9.4E-07 2E-11 87.8 8.1 36 42-78 4-39 (215)
87 cd02021 GntK Gluconate kinase 98.3 6.5E-06 1.4E-10 76.5 11.5 35 43-78 1-35 (150)
88 PRK05057 aroK shikimate kinase 98.3 2E-06 4.4E-11 83.2 8.1 139 41-214 4-153 (172)
89 PRK13949 shikimate kinase; Pro 98.3 5.1E-07 1.1E-11 87.3 3.8 34 43-77 3-36 (169)
90 PRK10078 ribose 1,5-bisphospho 98.3 4.4E-06 9.4E-11 81.3 10.3 34 42-76 3-36 (186)
91 smart00072 GuKc Guanylate kina 98.3 5.1E-06 1.1E-10 80.8 10.0 157 41-215 2-167 (184)
92 TIGR01313 therm_gnt_kin carboh 98.3 9.9E-06 2.1E-10 76.5 11.6 33 44-77 1-33 (163)
93 cd01428 ADK Adenylate kinase ( 98.2 5.7E-06 1.2E-10 79.6 9.7 33 44-77 2-34 (194)
94 PRK00625 shikimate kinase; Pro 98.2 1.7E-06 3.7E-11 84.5 5.6 34 43-77 2-35 (173)
95 PRK14528 adenylate kinase; Pro 98.2 4.4E-06 9.6E-11 81.8 8.4 35 42-77 2-36 (186)
96 PF13671 AAA_33: AAA domain; P 98.2 1.3E-06 2.9E-11 79.7 4.4 35 43-78 1-35 (143)
97 PRK14531 adenylate kinase; Pro 98.2 7.4E-06 1.6E-10 79.6 9.4 35 42-77 3-37 (183)
98 cd02030 NDUO42 NADH:Ubiquinone 98.2 2.8E-06 6.1E-11 85.1 6.7 60 151-215 141-202 (219)
99 PRK13946 shikimate kinase; Pro 98.2 3.1E-06 6.7E-11 82.4 6.7 36 40-76 9-44 (184)
100 PRK03731 aroL shikimate kinase 98.2 3.2E-06 6.9E-11 80.4 6.4 35 42-77 3-37 (171)
101 PRK14527 adenylate kinase; Pro 98.1 6.1E-06 1.3E-10 80.5 8.0 36 41-77 6-41 (191)
102 cd00464 SK Shikimate kinase (S 98.1 4.8E-06 1E-10 77.0 6.6 33 44-77 2-34 (154)
103 PRK13808 adenylate kinase; Pro 98.1 7.5E-06 1.6E-10 87.9 8.8 33 44-77 3-35 (333)
104 cd01673 dNK Deoxyribonucleosid 98.1 6.3E-06 1.4E-10 79.9 7.3 59 151-214 123-183 (193)
105 PRK02496 adk adenylate kinase; 98.1 1.6E-05 3.5E-10 76.8 9.9 34 43-77 3-36 (184)
106 COG1428 Deoxynucleoside kinase 98.1 4.1E-07 8.8E-12 91.7 -1.3 57 151-212 125-185 (216)
107 COG1936 Predicted nucleotide k 98.1 2E-05 4.4E-10 77.5 9.8 111 43-190 2-115 (180)
108 TIGR01351 adk adenylate kinase 98.0 1.5E-05 3.3E-10 78.9 8.7 33 44-77 2-34 (210)
109 cd07761 CYTH-like_CthTTM-like 98.0 1.8E-05 3.9E-10 75.5 8.5 88 257-358 26-116 (146)
110 cd00227 CPT Chloramphenicol (C 98.0 1.1E-05 2.5E-10 77.5 7.2 37 41-77 2-39 (175)
111 PRK14532 adenylate kinase; Pro 98.0 3.7E-05 8E-10 74.4 10.6 34 44-78 3-36 (188)
112 PRK03846 adenylylsulfate kinas 98.0 1.7E-05 3.6E-10 78.1 7.6 39 39-77 22-64 (198)
113 PRK00279 adk adenylate kinase; 98.0 1.9E-05 4.1E-10 78.5 8.0 34 43-77 2-35 (215)
114 TIGR03574 selen_PSTK L-seryl-t 98.0 1.6E-05 3.5E-10 80.7 7.4 34 43-76 1-38 (249)
115 PRK13947 shikimate kinase; Pro 98.0 3.1E-05 6.7E-10 73.4 8.7 34 43-77 3-36 (171)
116 TIGR00041 DTMP_kinase thymidyl 98.0 7.3E-05 1.6E-09 72.4 11.3 26 41-66 3-28 (195)
117 PRK13948 shikimate kinase; Pro 97.9 2.9E-05 6.2E-10 76.6 8.1 36 41-77 10-45 (182)
118 PHA02530 pseT polynucleotide k 97.9 3.9E-05 8.4E-10 79.4 9.3 36 42-77 3-38 (300)
119 COG0703 AroK Shikimate kinase 97.9 1.3E-05 2.8E-10 78.8 4.7 141 43-214 4-151 (172)
120 PRK00889 adenylylsulfate kinas 97.9 2.2E-05 4.7E-10 75.3 6.2 37 41-77 4-44 (175)
121 PRK00091 miaA tRNA delta(2)-is 97.8 0.00012 2.6E-09 77.8 11.5 35 41-76 4-38 (307)
122 TIGR00455 apsK adenylylsulfate 97.8 0.00013 2.7E-09 70.7 10.3 37 41-77 18-58 (184)
123 PRK08154 anaerobic benzoate ca 97.8 3.9E-05 8.5E-10 81.1 7.3 39 38-77 130-168 (309)
124 cd01672 TMPK Thymidine monopho 97.8 4E-05 8.7E-10 73.1 6.6 25 42-66 1-25 (200)
125 PF01583 APS_kinase: Adenylyls 97.8 2.6E-05 5.6E-10 75.6 5.2 38 41-78 2-43 (156)
126 PRK14738 gmk guanylate kinase; 97.8 0.00024 5.3E-09 70.6 12.1 28 38-65 10-37 (206)
127 PRK12338 hypothetical protein; 97.8 6.6E-05 1.4E-09 80.3 8.5 36 41-77 4-40 (319)
128 KOG3347 Predicted nucleotide k 97.8 0.00017 3.8E-09 69.9 9.9 110 43-186 9-121 (176)
129 COG0563 Adk Adenylate kinase a 97.7 5.2E-05 1.1E-09 74.5 6.6 36 43-79 2-37 (178)
130 PLN02772 guanylate kinase 97.7 0.00015 3.2E-09 79.5 10.5 205 38-278 132-352 (398)
131 PRK00698 tmk thymidylate kinas 97.7 0.00014 3E-09 70.5 9.3 26 41-66 3-28 (205)
132 PTZ00088 adenylate kinase 1; P 97.7 0.00017 3.6E-09 73.7 10.1 34 44-78 9-42 (229)
133 cd07756 CYTH-like_Pase_CHAD Un 97.6 0.00049 1.1E-08 68.8 11.7 102 252-355 32-159 (197)
134 cd02027 APSK Adenosine 5'-phos 97.6 7.1E-05 1.5E-09 70.9 5.2 35 43-77 1-39 (149)
135 COG0529 CysC Adenylylsulfate k 97.6 0.00027 5.9E-09 70.1 9.1 38 39-76 21-62 (197)
136 PF08433 KTI12: Chromatin asso 97.6 0.00026 5.7E-09 74.0 9.3 106 42-174 2-120 (270)
137 TIGR03575 selen_PSTK_euk L-ser 97.6 0.00015 3.3E-09 78.1 7.7 36 43-78 1-41 (340)
138 cd07374 CYTH-like_Pase CYTH-li 97.6 0.0004 8.6E-09 66.9 9.6 95 253-355 32-154 (174)
139 PRK12339 2-phosphoglycerate ki 97.6 0.00043 9.3E-09 69.1 9.9 36 41-76 3-38 (197)
140 PRK14526 adenylate kinase; Pro 97.5 0.00045 9.7E-09 69.6 9.7 33 44-77 3-35 (211)
141 PLN02165 adenylate isopentenyl 97.5 0.0001 2.2E-09 79.2 5.2 40 36-76 38-77 (334)
142 COG1703 ArgK Putative periplas 97.5 0.00056 1.2E-08 72.7 10.3 150 11-219 28-202 (323)
143 PRK09825 idnK D-gluconate kina 97.5 0.0006 1.3E-08 66.6 9.9 38 40-78 2-39 (176)
144 KOG3877 NADH:ubiquinone oxidor 97.5 0.00024 5.2E-09 74.7 7.2 26 41-66 71-96 (393)
145 KOG3079 Uridylate kinase/adeny 97.5 0.00028 6.1E-09 70.2 7.3 108 41-176 8-136 (195)
146 PRK05416 glmZ(sRNA)-inactivati 97.5 0.00061 1.3E-08 71.9 10.2 25 40-64 5-29 (288)
147 PLN02199 shikimate kinase 97.5 0.00038 8.3E-09 73.9 8.4 37 40-77 101-137 (303)
148 PRK05537 bifunctional sulfate 97.4 0.00051 1.1E-08 78.7 9.2 37 41-77 392-433 (568)
149 PLN02840 tRNA dimethylallyltra 97.4 0.00014 3.1E-09 80.3 4.1 35 41-76 21-55 (421)
150 PRK14021 bifunctional shikimat 97.3 0.00034 7.5E-09 79.6 7.1 36 41-77 6-41 (542)
151 PLN02842 nucleotide kinase 97.3 0.0012 2.6E-08 74.6 11.0 31 46-77 2-32 (505)
152 PF00406 ADK: Adenylate kinase 97.3 0.00018 3.9E-09 67.5 3.7 31 46-77 1-31 (151)
153 TIGR00174 miaA tRNA isopenteny 97.3 0.00073 1.6E-08 71.4 8.5 33 43-76 1-33 (287)
154 PRK14729 miaA tRNA delta(2)-is 97.3 0.0015 3.2E-08 69.5 10.7 34 41-76 4-37 (300)
155 COG0324 MiaA tRNA delta(2)-iso 97.2 0.0026 5.5E-08 68.0 11.0 35 41-76 3-37 (308)
156 PLN02674 adenylate kinase 97.2 0.0011 2.4E-08 68.6 8.0 36 42-78 32-67 (244)
157 PHA00729 NTP-binding motif con 97.2 0.0013 2.8E-08 67.5 8.4 96 43-166 19-132 (226)
158 PRK13973 thymidylate kinase; P 97.1 0.0022 4.8E-08 64.1 9.4 34 41-74 3-38 (213)
159 PLN02459 probable adenylate ki 97.1 0.0016 3.5E-08 68.1 7.8 46 31-78 20-65 (261)
160 PRK05506 bifunctional sulfate 97.0 0.0019 4.1E-08 74.7 9.0 39 40-78 459-501 (632)
161 PRK07933 thymidylate kinase; V 97.0 0.0023 5E-08 64.4 8.4 24 43-66 2-25 (213)
162 cd00071 GMPK Guanosine monopho 97.0 0.0031 6.8E-08 59.0 8.5 116 43-164 1-122 (137)
163 PF06414 Zeta_toxin: Zeta toxi 97.0 0.00089 1.9E-08 66.0 4.8 39 40-78 14-54 (199)
164 COG0125 Tmk Thymidylate kinase 96.9 0.0022 4.7E-08 64.9 7.4 153 41-204 3-177 (208)
165 PRK13951 bifunctional shikimat 96.9 0.00094 2E-08 75.3 5.1 34 43-77 2-35 (488)
166 PRK04220 2-phosphoglycerate ki 96.9 0.00084 1.8E-08 71.4 4.5 36 42-77 93-128 (301)
167 PF07931 CPT: Chloramphenicol 96.9 0.00067 1.5E-08 66.8 3.4 37 42-78 2-39 (174)
168 TIGR01663 PNK-3'Pase polynucle 96.9 0.0029 6.3E-08 72.0 8.7 122 37-192 365-489 (526)
169 COG3265 GntK Gluconate kinase 96.9 0.0053 1.1E-07 59.6 8.8 33 48-81 2-34 (161)
170 COG4639 Predicted kinase [Gene 96.9 0.0022 4.8E-08 62.6 6.3 124 41-192 2-132 (168)
171 COG4088 Predicted nucleotide k 96.8 0.0014 3.1E-08 66.7 4.9 33 42-74 2-36 (261)
172 PF00448 SRP54: SRP54-type pro 96.8 0.001 2.2E-08 66.3 3.6 38 41-78 1-42 (196)
173 PRK13974 thymidylate kinase; P 96.8 0.0078 1.7E-07 60.1 9.8 46 152-201 134-179 (212)
174 PLN02748 tRNA dimethylallyltra 96.7 0.0015 3.2E-08 73.4 4.7 36 40-76 21-56 (468)
175 KOG3354 Gluconate kinase [Carb 96.7 0.001 2.2E-08 65.0 2.9 38 43-81 14-51 (191)
176 smart00382 AAA ATPases associa 96.7 0.002 4.4E-08 55.8 4.3 36 41-76 2-41 (148)
177 PRK14529 adenylate kinase; Pro 96.7 0.0036 7.9E-08 63.9 6.6 34 44-78 3-36 (223)
178 PF00004 AAA: ATPase family as 96.7 0.0023 5.1E-08 56.9 4.6 31 44-75 1-31 (132)
179 PF01591 6PF2K: 6-phosphofruct 96.5 0.0036 7.7E-08 64.0 5.6 145 42-203 13-177 (222)
180 TIGR03499 FlhF flagellar biosy 96.5 0.0052 1.1E-07 64.4 6.8 38 40-77 193-236 (282)
181 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0037 8.1E-08 59.2 4.8 26 41-66 22-47 (133)
182 PF03668 ATP_bind_2: P-loop AT 96.4 0.016 3.4E-07 61.4 9.2 30 42-75 2-31 (284)
183 TIGR01425 SRP54_euk signal rec 96.3 0.005 1.1E-07 68.5 5.7 38 40-77 99-140 (429)
184 PRK13976 thymidylate kinase; P 96.3 0.0083 1.8E-07 60.4 6.6 24 43-66 2-25 (209)
185 PF13521 AAA_28: AAA domain; P 96.3 0.0038 8.3E-08 59.1 3.8 29 44-76 2-30 (163)
186 PF02367 UPF0079: Uncharacteri 96.3 0.0059 1.3E-07 57.2 4.8 27 40-66 14-40 (123)
187 PRK10416 signal recognition pa 96.2 0.0069 1.5E-07 64.8 5.8 38 40-77 113-154 (318)
188 TIGR00064 ftsY signal recognit 96.2 0.0076 1.6E-07 63.1 5.8 40 39-78 70-113 (272)
189 PF03029 ATP_bind_1: Conserved 96.1 0.0033 7.1E-08 64.6 2.7 30 46-75 1-34 (238)
190 PF13189 Cytidylate_kin2: Cyti 96.1 0.008 1.7E-07 58.7 5.2 32 43-75 1-32 (179)
191 PRK10867 signal recognition pa 96.1 0.0096 2.1E-07 66.4 6.2 40 39-78 98-142 (433)
192 PRK06761 hypothetical protein; 96.1 0.011 2.4E-07 62.5 6.3 26 41-66 3-28 (282)
193 PRK13975 thymidylate kinase; P 96.1 0.0057 1.2E-07 59.3 3.8 25 42-66 3-27 (196)
194 cd01131 PilT Pilus retraction 96.0 0.0077 1.7E-07 59.6 4.6 24 43-66 3-26 (198)
195 cd03115 SRP The signal recogni 96.0 0.0067 1.5E-07 57.9 4.0 35 43-77 2-40 (173)
196 COG1855 ATPase (PilT family) [ 95.9 0.01 2.2E-07 66.3 5.3 23 44-66 266-288 (604)
197 PHA03132 thymidine kinase; Pro 95.9 0.02 4.2E-07 66.0 7.7 25 41-65 257-281 (580)
198 PRK09435 membrane ATPase/prote 95.9 0.0073 1.6E-07 65.2 4.0 35 41-75 56-94 (332)
199 PRK11545 gntK gluconate kinase 95.9 0.0076 1.7E-07 58.0 3.7 29 48-77 2-30 (163)
200 TIGR00959 ffh signal recogniti 95.8 0.014 3E-07 65.0 6.0 38 40-77 98-140 (428)
201 PF03205 MobB: Molybdopterin g 95.8 0.0063 1.4E-07 57.6 2.7 25 42-66 1-25 (140)
202 cd00009 AAA The AAA+ (ATPases 95.8 0.013 2.9E-07 51.5 4.6 26 40-65 18-43 (151)
203 PRK09087 hypothetical protein; 95.7 0.058 1.3E-06 54.9 9.7 125 41-192 44-184 (226)
204 PRK12337 2-phosphoglycerate ki 95.7 0.011 2.3E-07 66.5 4.7 38 40-77 254-291 (475)
205 PRK05800 cobU adenosylcobinami 95.7 0.011 2.3E-07 57.8 4.1 24 43-66 3-26 (170)
206 cd01120 RecA-like_NTPases RecA 95.7 0.0087 1.9E-07 54.5 3.2 33 43-75 1-37 (165)
207 PF13173 AAA_14: AAA domain 95.7 0.013 2.9E-07 53.7 4.3 36 41-76 2-40 (128)
208 PRK13851 type IV secretion sys 95.6 0.011 2.4E-07 64.1 4.2 36 40-75 161-197 (344)
209 COG1126 GlnQ ABC-type polar am 95.6 0.009 1.9E-07 61.3 3.3 24 41-64 28-51 (240)
210 PRK10751 molybdopterin-guanine 95.6 0.0099 2.1E-07 58.7 3.5 26 41-66 6-31 (173)
211 PRK11176 lipid transporter ATP 95.6 0.019 4E-07 65.2 6.2 27 40-66 368-394 (582)
212 cd01130 VirB11-like_ATPase Typ 95.6 0.016 3.4E-07 56.7 4.7 26 41-66 25-50 (186)
213 TIGR00101 ureG urease accessor 95.5 0.019 4.1E-07 57.3 5.2 36 42-77 2-40 (199)
214 PF05729 NACHT: NACHT domain 95.5 0.01 2.2E-07 54.7 3.0 25 42-66 1-25 (166)
215 PRK10646 ADP-binding protein; 95.5 0.02 4.2E-07 55.7 4.8 26 41-66 28-53 (153)
216 PRK12724 flagellar biosynthesi 95.5 0.011 2.5E-07 65.7 3.6 39 40-78 222-265 (432)
217 PRK12726 flagellar biosynthesi 95.4 0.016 3.4E-07 64.0 4.6 40 39-78 204-247 (407)
218 PRK00771 signal recognition pa 95.4 0.021 4.7E-07 63.7 5.6 39 39-77 93-135 (437)
219 smart00763 AAA_PrkA PrkA AAA d 95.4 0.012 2.6E-07 64.2 3.6 28 39-66 76-103 (361)
220 PF03308 ArgK: ArgK protein; 95.3 0.011 2.4E-07 62.0 2.8 103 41-163 29-153 (266)
221 cd00820 PEPCK_HprK Phosphoenol 95.3 0.021 4.6E-07 52.3 4.3 22 41-62 15-36 (107)
222 PF07724 AAA_2: AAA domain (Cd 95.2 0.019 4E-07 56.2 4.0 38 41-78 3-45 (171)
223 cd03116 MobB Molybdenum is an 95.2 0.021 4.5E-07 55.4 4.2 25 42-66 2-26 (159)
224 PRK12723 flagellar biosynthesi 95.2 0.02 4.3E-07 63.1 4.6 39 40-78 173-219 (388)
225 PRK11889 flhF flagellar biosyn 95.2 0.028 6.1E-07 62.4 5.7 37 41-77 241-281 (436)
226 PRK11174 cysteine/glutathione 95.2 0.028 6.1E-07 64.0 5.9 27 40-66 375-401 (588)
227 PRK14493 putative bifunctional 95.2 0.018 4E-07 60.5 4.1 34 42-75 2-38 (274)
228 COG1419 FlhF Flagellar GTP-bin 95.2 0.022 4.8E-07 62.9 4.8 43 37-79 199-247 (407)
229 cd03292 ABC_FtsE_transporter F 95.1 0.017 3.7E-07 56.9 3.3 27 40-66 26-52 (214)
230 TIGR02203 MsbA_lipidA lipid A 95.1 0.035 7.6E-07 62.7 6.3 27 40-66 357-383 (571)
231 COG4619 ABC-type uncharacteriz 95.1 0.043 9.4E-07 54.8 6.1 41 26-66 9-54 (223)
232 TIGR00176 mobB molybdopterin-g 95.1 0.017 3.8E-07 55.5 3.3 32 43-74 1-36 (155)
233 TIGR00750 lao LAO/AO transport 95.1 0.02 4.2E-07 60.5 3.9 38 40-77 33-74 (300)
234 PRK13900 type IV secretion sys 95.1 0.024 5.2E-07 61.1 4.6 35 41-75 160-195 (332)
235 PRK08099 bifunctional DNA-bind 95.1 0.017 3.7E-07 63.7 3.6 26 41-66 219-244 (399)
236 PF13401 AAA_22: AAA domain; P 95.1 0.015 3.4E-07 52.1 2.6 25 41-65 4-28 (131)
237 cd00544 CobU Adenosylcobinamid 95.1 0.024 5.3E-07 55.4 4.2 24 43-66 1-24 (169)
238 cd03225 ABC_cobalt_CbiO_domain 95.0 0.019 4.1E-07 56.5 3.4 27 40-66 26-52 (211)
239 PF01745 IPT: Isopentenyl tran 95.0 0.023 5E-07 58.3 4.0 34 42-76 2-35 (233)
240 TIGR01166 cbiO cobalt transpor 95.0 0.02 4.3E-07 55.6 3.4 27 40-66 17-43 (190)
241 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.018 4E-07 56.9 3.2 27 40-66 29-55 (218)
242 KOG0744 AAA+-type ATPase [Post 95.0 0.023 5.1E-07 61.4 4.2 36 41-79 177-212 (423)
243 TIGR00960 3a0501s02 Type II (G 95.0 0.019 4E-07 56.9 3.2 27 40-66 28-54 (216)
244 PF07728 AAA_5: AAA domain (dy 95.0 0.019 4.2E-07 52.7 3.1 32 44-75 2-34 (139)
245 PRK12727 flagellar biosynthesi 95.0 0.05 1.1E-06 62.3 7.0 38 41-78 350-393 (559)
246 cd01394 radB RadB. The archaea 95.0 0.028 6E-07 55.7 4.4 35 41-75 19-57 (218)
247 PRK13833 conjugal transfer pro 95.0 0.028 6E-07 60.6 4.7 35 41-75 144-182 (323)
248 cd03271 ABC_UvrA_II The excisi 94.9 0.032 6.9E-07 58.3 4.9 21 41-61 21-41 (261)
249 COG1136 SalX ABC-type antimicr 94.9 0.021 4.5E-07 58.7 3.5 25 41-65 31-55 (226)
250 COG0802 Predicted ATPase or ki 94.9 0.034 7.3E-07 53.9 4.6 27 40-66 24-50 (149)
251 COG1618 Predicted nucleotide k 94.9 0.018 3.9E-07 56.8 2.8 24 43-66 7-30 (179)
252 TIGR02673 FtsE cell division A 94.9 0.02 4.4E-07 56.4 3.2 27 40-66 27-53 (214)
253 cd03224 ABC_TM1139_LivF_branch 94.9 0.02 4.3E-07 56.7 3.2 27 40-66 25-51 (222)
254 cd03269 ABC_putative_ATPase Th 94.9 0.021 4.5E-07 56.3 3.3 27 40-66 25-51 (210)
255 cd03256 ABC_PhnC_transporter A 94.9 0.02 4.4E-07 57.3 3.2 27 40-66 26-52 (241)
256 cd03258 ABC_MetN_methionine_tr 94.9 0.021 4.5E-07 57.1 3.3 27 40-66 30-56 (233)
257 cd03263 ABC_subfamily_A The AB 94.9 0.021 4.6E-07 56.5 3.3 27 40-66 27-53 (220)
258 PRK14974 cell division protein 94.9 0.024 5.2E-07 61.3 3.9 38 41-78 140-181 (336)
259 cd03259 ABC_Carb_Solutes_like 94.9 0.022 4.7E-07 56.3 3.3 27 40-66 25-51 (213)
260 PRK13768 GTPase; Provisional 94.9 0.027 5.8E-07 58.2 4.1 34 42-75 3-40 (253)
261 PF00005 ABC_tran: ABC transpo 94.9 0.02 4.4E-07 52.0 2.9 26 41-66 11-36 (137)
262 PF00437 T2SE: Type II/IV secr 94.9 0.028 6.1E-07 57.7 4.2 35 41-75 127-163 (270)
263 KOG0707 Guanylate kinase [Nucl 94.9 0.15 3.2E-06 52.7 9.3 37 31-67 27-63 (231)
264 TIGR02782 TrbB_P P-type conjug 94.9 0.032 7E-07 59.2 4.8 36 41-76 132-171 (299)
265 cd03219 ABC_Mj1267_LivG_branch 94.8 0.021 4.6E-07 57.1 3.0 27 40-66 25-51 (236)
266 cd03261 ABC_Org_Solvent_Resist 94.8 0.023 4.9E-07 57.1 3.2 27 40-66 25-51 (235)
267 TIGR02237 recomb_radB DNA repa 94.8 0.032 6.9E-07 54.8 4.2 35 41-75 12-50 (209)
268 COG4962 CpaF Flp pilus assembl 94.8 0.027 5.9E-07 61.1 4.0 35 42-76 174-209 (355)
269 TIGR02524 dot_icm_DotB Dot/Icm 94.8 0.036 7.9E-07 60.4 5.0 26 40-65 133-158 (358)
270 cd03293 ABC_NrtD_SsuB_transpor 94.8 0.025 5.5E-07 56.2 3.5 27 40-66 29-55 (220)
271 cd03235 ABC_Metallic_Cations A 94.8 0.023 5E-07 56.1 3.2 27 40-66 24-50 (213)
272 cd03262 ABC_HisP_GlnQ_permease 94.7 0.024 5.3E-07 55.7 3.3 27 40-66 25-51 (213)
273 cd03260 ABC_PstB_phosphate_tra 94.7 0.029 6.2E-07 55.9 3.8 26 40-65 25-50 (227)
274 TIGR02315 ABC_phnC phosphonate 94.7 0.024 5.1E-07 57.0 3.3 27 40-66 27-53 (243)
275 TIGR02525 plasmid_TraJ plasmid 94.7 0.033 7.1E-07 61.1 4.5 34 42-75 150-187 (372)
276 TIGR02211 LolD_lipo_ex lipopro 94.7 0.025 5.4E-07 56.1 3.3 27 40-66 30-56 (221)
277 cd01918 HprK_C HprK/P, the bif 94.7 0.037 8E-07 53.5 4.3 35 38-74 11-45 (149)
278 cd03229 ABC_Class3 This class 94.7 0.026 5.6E-07 54.5 3.3 27 40-66 25-51 (178)
279 PRK11784 tRNA 2-selenouridine 94.7 0.19 4.1E-06 54.7 10.2 65 40-106 140-207 (345)
280 cd03226 ABC_cobalt_CbiO_domain 94.7 0.026 5.5E-07 55.5 3.3 27 40-66 25-51 (205)
281 TIGR02788 VirB11 P-type DNA tr 94.7 0.034 7.3E-07 59.0 4.4 35 41-75 144-179 (308)
282 TIGR03797 NHPM_micro_ABC2 NHPM 94.7 0.049 1.1E-06 63.4 6.0 27 40-66 478-504 (686)
283 TIGR03608 L_ocin_972_ABC putat 94.7 0.027 5.9E-07 55.1 3.4 27 40-66 23-49 (206)
284 PRK11629 lolD lipoprotein tran 94.6 0.027 5.8E-07 56.6 3.3 27 40-66 34-60 (233)
285 TIGR03864 PQQ_ABC_ATP ABC tran 94.6 0.028 6.1E-07 56.5 3.5 27 40-66 26-52 (236)
286 cd03265 ABC_DrrA DrrA is the A 94.6 0.027 5.8E-07 56.0 3.3 27 40-66 25-51 (220)
287 TIGR01420 pilT_fam pilus retra 94.6 0.042 9.1E-07 59.2 5.0 26 41-66 122-147 (343)
288 cd03264 ABC_drug_resistance_li 94.6 0.024 5.3E-07 55.8 2.9 24 43-66 27-50 (211)
289 cd03296 ABC_CysA_sulfate_impor 94.6 0.027 5.8E-07 56.8 3.3 27 40-66 27-53 (239)
290 cd03234 ABCG_White The White s 94.6 0.028 6.2E-07 56.1 3.4 27 40-66 32-58 (226)
291 cd03301 ABC_MalK_N The N-termi 94.6 0.028 6E-07 55.4 3.3 27 40-66 25-51 (213)
292 COG0645 Predicted kinase [Gene 94.6 0.04 8.6E-07 54.5 4.3 36 42-78 2-37 (170)
293 PF13555 AAA_29: P-loop contai 94.6 0.036 7.8E-07 46.2 3.4 24 42-65 24-47 (62)
294 PRK10584 putative ABC transpor 94.6 0.03 6.4E-07 55.9 3.4 27 40-66 35-61 (228)
295 PTZ00322 6-phosphofructo-2-kin 94.5 0.16 3.5E-06 59.5 9.8 38 41-78 215-256 (664)
296 PF13245 AAA_19: Part of AAA d 94.5 0.042 9.2E-07 47.0 3.8 25 41-65 10-35 (76)
297 cd03257 ABC_NikE_OppD_transpor 94.5 0.028 6.1E-07 55.8 3.1 27 40-66 30-56 (228)
298 cd03230 ABC_DR_subfamily_A Thi 94.5 0.03 6.5E-07 53.8 3.2 27 40-66 25-51 (173)
299 TIGR03410 urea_trans_UrtE urea 94.5 0.028 6.1E-07 56.1 3.1 27 40-66 25-51 (230)
300 COG2074 2-phosphoglycerate kin 94.5 0.036 7.9E-07 58.1 3.9 38 40-77 88-125 (299)
301 cd03114 ArgK-like The function 94.5 0.028 6E-07 53.6 2.9 33 43-75 1-37 (148)
302 cd03223 ABCD_peroxisomal_ALDP 94.5 0.032 6.9E-07 53.6 3.3 27 40-66 26-52 (166)
303 cd03222 ABC_RNaseL_inhibitor T 94.5 0.03 6.6E-07 55.1 3.2 27 40-66 24-50 (177)
304 PRK14247 phosphate ABC transpo 94.5 0.032 7E-07 56.5 3.5 26 40-65 28-53 (250)
305 TIGR03015 pepcterm_ATPase puta 94.5 0.037 8E-07 56.1 3.9 26 41-66 43-68 (269)
306 COG1124 DppF ABC-type dipeptid 94.4 0.031 6.8E-07 58.1 3.3 26 41-66 33-58 (252)
307 PRK14722 flhF flagellar biosyn 94.4 0.035 7.6E-07 61.0 3.9 38 41-78 137-180 (374)
308 cd03247 ABCC_cytochrome_bd The 94.4 0.035 7.5E-07 53.6 3.4 27 40-66 27-53 (178)
309 cd03246 ABCC_Protease_Secretio 94.4 0.038 8.3E-07 53.1 3.7 27 40-66 27-53 (173)
310 cd03245 ABCC_bacteriocin_expor 94.4 0.034 7.4E-07 55.0 3.4 27 40-66 29-55 (220)
311 COG1763 MobB Molybdopterin-gua 94.4 0.029 6.2E-07 54.9 2.8 26 41-66 2-27 (161)
312 cd03266 ABC_NatA_sodium_export 94.4 0.032 6.9E-07 55.2 3.2 27 40-66 30-56 (218)
313 PRK05703 flhF flagellar biosyn 94.4 0.036 7.8E-07 61.6 3.9 37 41-77 221-263 (424)
314 PRK13541 cytochrome c biogenes 94.4 0.035 7.6E-07 54.3 3.4 27 40-66 25-51 (195)
315 TIGR01184 ntrCD nitrate transp 94.4 0.033 7.1E-07 56.1 3.2 26 41-66 11-36 (230)
316 TIGR01277 thiQ thiamine ABC tr 94.3 0.035 7.5E-07 55.0 3.3 27 40-66 23-49 (213)
317 cd03298 ABC_ThiQ_thiamine_tran 94.3 0.034 7.4E-07 54.8 3.3 27 40-66 23-49 (211)
318 cd03268 ABC_BcrA_bacitracin_re 94.3 0.035 7.5E-07 54.6 3.3 27 40-66 25-51 (208)
319 cd03214 ABC_Iron-Siderophores_ 94.3 0.036 7.8E-07 53.7 3.3 27 40-66 24-50 (180)
320 PRK10908 cell division protein 94.3 0.034 7.4E-07 55.3 3.2 27 40-66 27-53 (222)
321 PF13479 AAA_24: AAA domain 94.3 0.1 2.2E-06 52.3 6.6 59 42-106 4-63 (213)
322 PRK11124 artP arginine transpo 94.3 0.037 8E-07 55.8 3.5 27 40-66 27-53 (242)
323 cd03273 ABC_SMC2_euk Eukaryoti 94.3 0.052 1.1E-06 55.4 4.6 32 35-66 19-50 (251)
324 cd03232 ABC_PDR_domain2 The pl 94.3 0.038 8.2E-07 54.1 3.5 25 40-64 32-56 (192)
325 PRK10247 putative ABC transpor 94.3 0.037 8E-07 55.5 3.5 27 40-66 32-58 (225)
326 cd01123 Rad51_DMC1_radA Rad51_ 94.3 0.061 1.3E-06 53.6 5.0 24 41-64 19-42 (235)
327 TIGR02868 CydC thiol reductant 94.3 0.032 6.9E-07 62.7 3.3 27 40-66 360-386 (529)
328 cd03252 ABCC_Hemolysin The ABC 94.3 0.035 7.6E-07 55.7 3.3 27 40-66 27-53 (237)
329 PRK11264 putative amino-acid A 94.3 0.036 7.8E-07 56.1 3.4 27 40-66 28-54 (250)
330 PRK15177 Vi polysaccharide exp 94.3 0.033 7.3E-07 55.6 3.1 26 41-66 13-38 (213)
331 PRK14250 phosphate ABC transpo 94.3 0.035 7.6E-07 56.2 3.3 27 40-66 28-54 (241)
332 TIGR01978 sufC FeS assembly AT 94.3 0.037 8E-07 55.5 3.4 26 40-65 25-50 (243)
333 cd03218 ABC_YhbG The ABC trans 94.3 0.036 7.7E-07 55.4 3.2 27 40-66 25-51 (232)
334 COG0541 Ffh Signal recognition 94.3 0.069 1.5E-06 59.6 5.7 43 35-77 94-140 (451)
335 PRK11701 phnK phosphonate C-P 94.3 0.036 7.7E-07 56.6 3.3 27 40-66 31-57 (258)
336 cd03297 ABC_ModC_molybdenum_tr 94.2 0.036 7.7E-07 54.9 3.2 25 42-66 24-48 (214)
337 cd01124 KaiC KaiC is a circadi 94.2 0.041 9E-07 52.5 3.5 33 43-75 1-37 (187)
338 cd03251 ABCC_MsbA MsbA is an e 94.2 0.038 8.1E-07 55.3 3.3 27 40-66 27-53 (234)
339 PRK09493 glnQ glutamine ABC tr 94.2 0.037 8E-07 55.7 3.3 27 40-66 26-52 (240)
340 cd03295 ABC_OpuCA_Osmoprotecti 94.2 0.037 8.1E-07 55.8 3.3 27 40-66 26-52 (242)
341 cd03238 ABC_UvrA The excision 94.2 0.039 8.5E-07 54.2 3.3 22 41-62 21-42 (176)
342 TIGR01189 ccmA heme ABC export 94.2 0.038 8.3E-07 54.1 3.3 27 40-66 25-51 (198)
343 PRK13894 conjugal transfer ATP 94.2 0.06 1.3E-06 57.8 5.0 35 41-75 148-186 (319)
344 cd01129 PulE-GspE PulE/GspE Th 94.2 0.068 1.5E-06 55.7 5.3 36 40-75 79-116 (264)
345 PRK06995 flhF flagellar biosyn 94.2 0.042 9.1E-07 62.2 4.0 37 41-77 256-298 (484)
346 PRK13540 cytochrome c biogenes 94.2 0.04 8.6E-07 54.2 3.4 27 40-66 26-52 (200)
347 PRK14267 phosphate ABC transpo 94.2 0.039 8.4E-07 56.0 3.4 26 40-65 29-54 (253)
348 cd03228 ABCC_MRP_Like The MRP 94.2 0.042 9.2E-07 52.7 3.5 27 40-66 27-53 (171)
349 TIGR02323 CP_lyasePhnK phospho 94.2 0.037 8E-07 56.1 3.2 27 40-66 28-54 (253)
350 TIGR02770 nickel_nikD nickel i 94.2 0.038 8.3E-07 55.4 3.2 27 40-66 11-37 (230)
351 TIGR00972 3a0107s01c2 phosphat 94.2 0.04 8.6E-07 55.8 3.4 26 40-65 26-51 (247)
352 PRK11248 tauB taurine transpor 94.2 0.038 8.2E-07 56.7 3.3 27 40-66 26-52 (255)
353 cd03254 ABCC_Glucan_exporter_l 94.2 0.039 8.5E-07 54.9 3.3 27 40-66 28-54 (229)
354 cd01983 Fer4_NifH The Fer4_Nif 94.2 0.049 1.1E-06 45.2 3.4 33 43-75 1-35 (99)
355 PRK13539 cytochrome c biogenes 94.2 0.042 9.1E-07 54.3 3.5 27 40-66 27-53 (207)
356 PHA02575 1 deoxynucleoside mon 94.1 0.05 1.1E-06 56.0 4.1 31 43-75 2-33 (227)
357 PRK13764 ATPase; Provisional 94.1 0.053 1.1E-06 62.9 4.7 34 41-74 257-292 (602)
358 TIGR03771 anch_rpt_ABC anchore 94.1 0.039 8.4E-07 55.3 3.3 27 40-66 5-31 (223)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.1 0.038 8.2E-07 52.0 3.0 27 40-66 25-51 (144)
360 TIGR02324 CP_lyasePhnL phospho 94.1 0.039 8.5E-07 54.9 3.3 27 40-66 33-59 (224)
361 PF03215 Rad17: Rad17 cell cyc 94.1 0.053 1.1E-06 61.9 4.7 31 40-71 44-74 (519)
362 PRK14242 phosphate transporter 94.1 0.042 9E-07 55.8 3.5 26 40-65 31-56 (253)
363 PRK13538 cytochrome c biogenes 94.1 0.04 8.7E-07 54.3 3.3 27 40-66 26-52 (204)
364 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.1 0.039 8.5E-07 55.4 3.3 27 40-66 28-54 (238)
365 PRK14723 flhF flagellar biosyn 94.1 0.15 3.3E-06 60.7 8.5 37 41-77 185-227 (767)
366 PRK14269 phosphate ABC transpo 94.1 0.042 9.2E-07 55.7 3.5 26 40-65 27-52 (246)
367 cd03244 ABCC_MRP_domain2 Domai 94.1 0.043 9.3E-07 54.4 3.4 26 41-66 30-55 (221)
368 PRK11300 livG leucine/isoleuci 94.1 0.038 8.3E-07 56.0 3.2 27 40-66 30-56 (255)
369 cd03248 ABCC_TAP TAP, the Tran 94.1 0.044 9.5E-07 54.6 3.5 27 40-66 39-65 (226)
370 KOG1384 tRNA delta(2)-isopente 94.1 0.054 1.2E-06 58.5 4.3 36 40-76 6-41 (348)
371 PRK10895 lipopolysaccharide AB 94.1 0.043 9.3E-07 55.3 3.5 27 40-66 28-54 (241)
372 PRK05201 hslU ATP-dependent pr 94.1 0.049 1.1E-06 60.9 4.2 36 39-75 48-83 (443)
373 PF01202 SKI: Shikimate kinase 94.1 0.028 6.1E-07 53.5 2.0 27 50-77 1-27 (158)
374 COG2954 Uncharacterized protei 94.1 0.16 3.5E-06 48.9 7.0 80 271-355 36-115 (156)
375 PRK10744 pstB phosphate transp 94.1 0.043 9.4E-07 56.2 3.4 26 40-65 38-63 (260)
376 PRK10575 iron-hydroxamate tran 94.0 0.037 8E-07 56.9 3.0 27 40-66 36-62 (265)
377 COG2274 SunT ABC-type bacterio 94.0 0.047 1E-06 64.5 4.1 36 41-76 499-535 (709)
378 PRK06731 flhF flagellar biosyn 94.0 0.1 2.2E-06 54.9 6.2 79 40-118 74-162 (270)
379 PRK14255 phosphate ABC transpo 94.0 0.045 9.7E-07 55.5 3.4 26 40-65 30-55 (252)
380 PRK14241 phosphate transporter 94.0 0.046 9.9E-07 55.8 3.5 26 40-65 29-54 (258)
381 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.0 0.045 9.7E-07 55.0 3.4 27 40-66 47-73 (224)
382 cd03215 ABC_Carb_Monos_II This 94.0 0.042 9.2E-07 53.3 3.1 26 41-66 26-51 (182)
383 PRK13648 cbiO cobalt transport 94.0 0.044 9.5E-07 56.5 3.3 27 40-66 34-60 (269)
384 PF03266 NTPase_1: NTPase; In 94.0 0.039 8.4E-07 53.9 2.7 22 44-65 2-23 (168)
385 PRK14256 phosphate ABC transpo 94.0 0.049 1.1E-06 55.3 3.6 26 40-65 29-54 (252)
386 PRK14251 phosphate ABC transpo 93.9 0.048 1E-06 55.3 3.5 26 40-65 29-54 (251)
387 TIGR03005 ectoine_ehuA ectoine 93.9 0.047 1E-06 55.5 3.4 27 40-66 25-51 (252)
388 PF13191 AAA_16: AAA ATPase do 93.9 0.035 7.6E-07 52.4 2.3 27 40-66 23-49 (185)
389 PRK13645 cbiO cobalt transport 93.9 0.044 9.6E-07 57.1 3.3 27 40-66 36-62 (289)
390 CHL00131 ycf16 sulfate ABC tra 93.9 0.044 9.6E-07 55.5 3.2 25 40-64 32-56 (252)
391 cd03233 ABC_PDR_domain1 The pl 93.9 0.044 9.5E-07 54.2 3.1 27 40-66 32-58 (202)
392 cd03253 ABCC_ATM1_transporter 93.9 0.048 1E-06 54.6 3.4 27 40-66 26-52 (236)
393 PRK10771 thiQ thiamine transpo 93.9 0.048 1E-06 54.7 3.4 27 40-66 24-50 (232)
394 PRK11247 ssuB aliphatic sulfon 93.9 0.046 1E-06 56.4 3.3 27 40-66 37-63 (257)
395 PLN02924 thymidylate kinase 93.9 0.053 1.1E-06 55.2 3.7 26 41-66 16-41 (220)
396 PRK14254 phosphate ABC transpo 93.9 0.031 6.8E-07 58.4 2.1 63 3-65 22-89 (285)
397 cd03216 ABC_Carb_Monos_I This 93.9 0.048 1E-06 52.2 3.2 27 40-66 25-51 (163)
398 cd03294 ABC_Pro_Gly_Bertaine T 93.9 0.047 1E-06 56.4 3.3 27 40-66 49-75 (269)
399 PRK14261 phosphate ABC transpo 93.9 0.049 1.1E-06 55.3 3.4 26 40-65 31-56 (253)
400 PRK14274 phosphate ABC transpo 93.9 0.055 1.2E-06 55.3 3.8 26 40-65 37-62 (259)
401 PRK14248 phosphate ABC transpo 93.9 0.05 1.1E-06 55.9 3.5 25 40-64 46-70 (268)
402 PRK14245 phosphate ABC transpo 93.8 0.051 1.1E-06 55.1 3.5 25 40-64 28-52 (250)
403 PRK14262 phosphate ABC transpo 93.8 0.051 1.1E-06 55.1 3.4 25 41-65 29-53 (250)
404 PRK11614 livF leucine/isoleuci 93.8 0.049 1.1E-06 54.8 3.3 27 40-66 30-56 (237)
405 PRK14239 phosphate transporter 93.8 0.051 1.1E-06 55.0 3.4 25 40-64 30-54 (252)
406 PRK15056 manganese/iron transp 93.8 0.047 1E-06 56.4 3.2 27 40-66 32-58 (272)
407 PRK14249 phosphate ABC transpo 93.8 0.05 1.1E-06 55.2 3.4 27 40-66 29-55 (251)
408 cd03267 ABC_NatA_like Similar 93.8 0.052 1.1E-06 54.9 3.5 27 40-66 46-72 (236)
409 KOG3062 RNA polymerase II elon 93.8 0.26 5.6E-06 51.2 8.4 25 42-66 2-26 (281)
410 cd02034 CooC The accessory pro 93.8 0.061 1.3E-06 49.5 3.6 32 44-75 2-37 (116)
411 PRK14244 phosphate ABC transpo 93.8 0.053 1.1E-06 55.1 3.5 26 40-65 30-55 (251)
412 PRK13543 cytochrome c biogenes 93.8 0.048 1E-06 54.2 3.1 27 40-66 36-62 (214)
413 cd03369 ABCC_NFT1 Domain 2 of 93.8 0.055 1.2E-06 53.3 3.5 27 40-66 33-59 (207)
414 PRK14490 putative bifunctional 93.8 0.048 1E-06 59.2 3.3 26 41-66 5-30 (369)
415 PRK13638 cbiO cobalt transport 93.8 0.046 1E-06 56.4 3.0 27 40-66 26-52 (271)
416 PRK13632 cbiO cobalt transport 93.8 0.052 1.1E-06 56.1 3.4 27 40-66 34-60 (271)
417 cd03283 ABC_MutS-like MutS-lik 93.8 0.052 1.1E-06 54.1 3.3 24 41-64 25-48 (199)
418 PRK14253 phosphate ABC transpo 93.7 0.061 1.3E-06 54.4 3.8 27 40-66 28-54 (249)
419 PRK10619 histidine/lysine/argi 93.7 0.051 1.1E-06 55.4 3.3 27 40-66 30-56 (257)
420 cd03250 ABCC_MRP_domain1 Domai 93.7 0.053 1.1E-06 53.3 3.3 27 40-66 30-56 (204)
421 TIGR02769 nickel_nikE nickel i 93.7 0.049 1.1E-06 56.0 3.2 27 40-66 36-62 (265)
422 cd03272 ABC_SMC3_euk Eukaryoti 93.7 0.061 1.3E-06 54.1 3.8 31 35-65 17-47 (243)
423 PRK09361 radB DNA repair and r 93.7 0.069 1.5E-06 53.2 4.1 34 41-74 23-60 (225)
424 PRK14235 phosphate transporter 93.7 0.061 1.3E-06 55.4 3.8 26 40-65 44-69 (267)
425 PRK14240 phosphate transporter 93.7 0.056 1.2E-06 54.8 3.5 26 40-65 28-53 (250)
426 TIGR03420 DnaA_homol_Hda DnaA 93.7 0.051 1.1E-06 53.6 3.1 36 41-76 38-77 (226)
427 PRK14238 phosphate transporter 93.7 0.061 1.3E-06 55.7 3.8 26 40-65 49-74 (271)
428 PRK14273 phosphate ABC transpo 93.7 0.056 1.2E-06 55.0 3.4 27 40-66 32-58 (254)
429 PRK14268 phosphate ABC transpo 93.7 0.056 1.2E-06 55.3 3.5 26 40-65 37-62 (258)
430 TIGR00390 hslU ATP-dependent p 93.7 0.077 1.7E-06 59.3 4.7 35 40-75 46-80 (441)
431 PRK09544 znuC high-affinity zi 93.7 0.054 1.2E-06 55.6 3.3 27 40-66 29-55 (251)
432 PRK13649 cbiO cobalt transport 93.6 0.052 1.1E-06 56.2 3.1 27 40-66 32-58 (280)
433 PRK14270 phosphate ABC transpo 93.6 0.059 1.3E-06 54.7 3.5 26 40-65 29-54 (251)
434 PRK09984 phosphonate/organopho 93.6 0.055 1.2E-06 55.4 3.3 27 40-66 29-55 (262)
435 PRK11831 putative ABC transpor 93.6 0.052 1.1E-06 56.0 3.2 27 40-66 32-58 (269)
436 cd03237 ABC_RNaseL_inhibitor_d 93.6 0.058 1.3E-06 55.4 3.4 27 40-66 24-50 (246)
437 PRK13547 hmuV hemin importer A 93.6 0.052 1.1E-06 56.5 3.2 27 40-66 26-52 (272)
438 TIGR01618 phage_P_loop phage n 93.6 0.062 1.3E-06 55.0 3.6 32 42-76 13-44 (220)
439 PF08477 Miro: Miro-like prote 93.6 0.066 1.4E-06 47.2 3.3 22 44-65 2-23 (119)
440 COG1660 Predicted P-loop-conta 93.6 0.53 1.2E-05 49.7 10.3 23 42-64 2-24 (286)
441 PRK14721 flhF flagellar biosyn 93.6 0.08 1.7E-06 59.0 4.6 39 40-78 190-234 (420)
442 PRK13548 hmuV hemin importer A 93.6 0.055 1.2E-06 55.5 3.2 27 40-66 27-53 (258)
443 TIGR00968 3a0106s01 sulfate AB 93.6 0.059 1.3E-06 54.4 3.4 27 40-66 25-51 (237)
444 cd03290 ABCC_SUR1_N The SUR do 93.6 0.063 1.4E-06 53.3 3.5 26 41-66 27-52 (218)
445 TIGR02640 gas_vesic_GvpN gas v 93.6 0.084 1.8E-06 54.6 4.5 32 43-74 23-55 (262)
446 cd03231 ABC_CcmA_heme_exporter 93.5 0.059 1.3E-06 53.1 3.2 27 40-66 25-51 (201)
447 PLN03187 meiotic recombination 93.5 0.18 3.9E-06 54.9 7.2 35 41-75 126-170 (344)
448 cd00984 DnaB_C DnaB helicase C 93.5 0.091 2E-06 52.6 4.6 35 41-75 13-52 (242)
449 COG3709 Uncharacterized compon 93.5 0.44 9.5E-06 47.4 9.0 137 40-192 4-150 (192)
450 TIGR00073 hypB hydrogenase acc 93.5 0.089 1.9E-06 52.2 4.5 35 40-74 21-58 (207)
451 TIGR02982 heterocyst_DevA ABC 93.5 0.061 1.3E-06 53.5 3.3 27 40-66 30-56 (220)
452 cd03236 ABC_RNaseL_inhibitor_d 93.5 0.059 1.3E-06 55.7 3.3 27 40-66 25-51 (255)
453 PRK13647 cbiO cobalt transport 93.5 0.059 1.3E-06 55.9 3.3 27 40-66 30-56 (274)
454 COG1132 MdlB ABC-type multidru 93.5 0.075 1.6E-06 60.4 4.4 27 40-66 354-380 (567)
455 PRK10419 nikE nickel transport 93.5 0.062 1.3E-06 55.5 3.4 27 40-66 37-63 (268)
456 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.07 1.5E-06 50.3 3.4 27 40-66 24-50 (157)
457 PRK14236 phosphate transporter 93.5 0.068 1.5E-06 55.2 3.7 26 40-65 50-75 (272)
458 TIGR03740 galliderm_ABC gallid 93.4 0.063 1.4E-06 53.4 3.3 27 40-66 25-51 (223)
459 PRK14237 phosphate transporter 93.4 0.071 1.5E-06 55.0 3.7 26 40-65 45-70 (267)
460 PRK14259 phosphate ABC transpo 93.4 0.065 1.4E-06 55.3 3.4 26 40-65 38-63 (269)
461 PRK14260 phosphate ABC transpo 93.4 0.075 1.6E-06 54.4 3.8 27 40-66 32-58 (259)
462 PRK09580 sufC cysteine desulfu 93.4 0.062 1.3E-06 54.2 3.2 26 40-65 26-51 (248)
463 cd03213 ABCG_EPDR ABCG transpo 93.4 0.069 1.5E-06 52.5 3.4 26 40-65 34-59 (194)
464 cd04163 Era Era subfamily. Er 93.4 0.074 1.6E-06 48.0 3.4 23 42-64 4-26 (168)
465 TIGR02881 spore_V_K stage V sp 93.4 0.056 1.2E-06 55.6 2.8 23 43-65 44-66 (261)
466 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.087 1.9E-06 54.5 4.2 34 41-74 36-73 (259)
467 PRK05342 clpX ATP-dependent pr 93.3 0.08 1.7E-06 58.8 4.2 28 39-66 106-133 (412)
468 TIGR01526 nadR_NMN_Atrans nico 93.3 0.068 1.5E-06 57.3 3.6 25 42-66 163-187 (325)
469 cd03300 ABC_PotA_N PotA is an 93.3 0.069 1.5E-06 53.7 3.4 27 40-66 25-51 (232)
470 TIGR02238 recomb_DMC1 meiotic 93.3 0.17 3.7E-06 54.2 6.6 35 41-75 96-140 (313)
471 PRK13640 cbiO cobalt transport 93.3 0.069 1.5E-06 55.6 3.4 26 41-66 33-58 (282)
472 PRK14495 putative molybdopteri 93.3 0.071 1.5E-06 59.7 3.7 33 42-74 2-38 (452)
473 TIGR03411 urea_trans_UrtD urea 93.3 0.072 1.6E-06 53.6 3.5 27 40-66 27-53 (242)
474 PF05496 RuvB_N: Holliday junc 93.3 0.11 2.4E-06 53.7 4.8 30 44-73 53-83 (233)
475 cd03217 ABC_FeS_Assembly ABC-t 93.3 0.073 1.6E-06 52.5 3.4 25 40-64 25-49 (200)
476 PRK11022 dppD dipeptide transp 93.3 0.067 1.5E-06 57.2 3.4 26 41-66 33-58 (326)
477 PRK10418 nikD nickel transport 93.3 0.071 1.5E-06 54.4 3.4 26 40-65 28-53 (254)
478 KOG1970 Checkpoint RAD17-RFC c 93.3 0.06 1.3E-06 61.5 3.0 34 37-71 106-139 (634)
479 COG4618 ArpD ABC-type protease 93.2 0.076 1.6E-06 60.3 3.8 26 41-66 362-387 (580)
480 COG2805 PilT Tfp pilus assembl 93.2 0.093 2E-06 56.4 4.3 37 39-75 123-162 (353)
481 TIGR01188 drrA daunorubicin re 93.2 0.067 1.4E-06 56.3 3.2 27 40-66 18-44 (302)
482 PRK11308 dppF dipeptide transp 93.2 0.069 1.5E-06 57.2 3.4 27 40-66 40-66 (327)
483 PF06745 KaiC: KaiC; InterPro 93.2 0.091 2E-06 52.4 4.0 35 41-75 19-58 (226)
484 PRK14272 phosphate ABC transpo 93.2 0.075 1.6E-06 53.8 3.5 26 40-65 29-54 (252)
485 PRK10253 iron-enterobactin tra 93.2 0.063 1.4E-06 55.2 3.0 27 40-66 32-58 (265)
486 PRK03695 vitamin B12-transport 93.2 0.067 1.5E-06 54.5 3.1 27 40-66 21-47 (248)
487 PRK13642 cbiO cobalt transport 93.2 0.072 1.6E-06 55.3 3.4 27 40-66 32-58 (277)
488 PRK14243 phosphate transporter 93.2 0.076 1.7E-06 54.6 3.5 26 40-65 35-60 (264)
489 PRK15112 antimicrobial peptide 93.2 0.071 1.5E-06 54.9 3.3 27 40-66 38-64 (267)
490 cd03278 ABC_SMC_barmotin Barmo 93.2 0.094 2E-06 52.1 4.0 30 37-66 18-47 (197)
491 TIGR03873 F420-0_ABC_ATP propo 93.2 0.068 1.5E-06 54.5 3.1 27 40-66 26-52 (256)
492 PRK15093 antimicrobial peptide 93.2 0.073 1.6E-06 56.9 3.4 26 40-65 32-57 (330)
493 cd03288 ABCC_SUR2 The SUR doma 93.2 0.078 1.7E-06 54.3 3.5 27 40-66 46-72 (257)
494 PRK14265 phosphate ABC transpo 93.1 0.077 1.7E-06 55.1 3.5 26 40-65 45-70 (274)
495 PRK10436 hypothetical protein; 93.1 0.15 3.2E-06 57.6 5.9 54 15-75 199-254 (462)
496 PRK11153 metN DL-methionine tr 93.1 0.071 1.5E-06 57.4 3.3 27 40-66 30-56 (343)
497 PRK14258 phosphate ABC transpo 93.1 0.077 1.7E-06 54.4 3.4 27 40-66 32-58 (261)
498 COG0378 HypB Ni2+-binding GTPa 93.1 0.096 2.1E-06 53.0 3.9 36 42-77 14-52 (202)
499 PRK13646 cbiO cobalt transport 93.1 0.076 1.6E-06 55.4 3.4 27 40-66 32-58 (286)
500 cd01393 recA_like RecA is a b 93.1 0.11 2.5E-06 51.3 4.5 24 41-64 19-42 (226)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=4.9e-182 Score=1492.00 Aligned_cols=630 Identities=83% Similarity=1.232 Sum_probs=612.4
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHhhcCCCceEecCCC-------------------------eEEEEeCCCCCcHH
Q 006667 1 MAQDTSSGADSPRRRPGLLRDQVQLVKKKDSDRYEIVPIED-------------------------TLSFEKGPSGAGKT 55 (636)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ll~~ql~~~~r~~~~~~~Iv~i~~-------------------------~IIgIsGgSGSGKT 55 (636)
||||+ ++++||+||+|||||||++++||++++|+|+|+++ .+|+|+||||||||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKT 79 (656)
T PLN02318 1 MAQDT-SGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKT 79 (656)
T ss_pred CCccc-ccCcCcccccchhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHH
Confidence 99999 78999999999999999999999999999999973 48999999999999
Q ss_pred HHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCCcccCcceeecCCCc
Q 006667 56 VFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 135 (636)
Q Consensus 56 TLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~d 135 (636)
|||+.|+..++++.+|++|+|++......++||+|.++|++.+.++|..|++|+.+.+|.|||.++.+.+++.+.+++.+
T Consensus 80 TLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~ 159 (656)
T PLN02318 80 VFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSR 159 (656)
T ss_pred HHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCc
Confidence 99999999998889999999986555556899999999999999999999999999999999999988765567788999
Q ss_pred eEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 136 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 136 VIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
||||||+|++++++++++|++|||++|.|.++.||+.||+.+||+++++++++|..+|+|+|.+||+|++++||+||.|+
T Consensus 160 VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~ 239 (656)
T PLN02318 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNK 239 (656)
T ss_pred EEEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeeeecCCCcccHHHHHHHhcccccccccceeeeEecCCCCCcccccceEEeeecCCeEEEEEeeeecCCC
Q 006667 216 FNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP 295 (636)
Q Consensus 216 f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~~~~~~~e~~~DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d~~ 295 (636)
|+|++|++|++||||+.+++.+++|+.+|.+....++++++||||+||++||++|++|||||++||+|+||||+|++|++
T Consensus 240 f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp 319 (656)
T PLN02318 240 FNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEP 319 (656)
T ss_pred CCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceEEEEecCCEEEEEEecccccCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cccccceeEEEeeechhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEecccHHHHHHHHHHcCCCCCc
Q 006667 296 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSY 375 (636)
Q Consensus 296 fiikPR~efev~v~~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg~~r~~v~~~~~~Lgl~G~~ 375 (636)
|||.|+++|||+|++++||++|||+++|+|+|.|++|.+|+++|++|||||||++||||||.+|+.|.++|++|||+|+|
T Consensus 320 ~ii~pk~~fEv~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~ 399 (656)
T PLN02318 320 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399 (656)
T ss_pred eecCcceeEEEeeehHhHHHHcCCceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhccccccCCChhhhcccccCcccccCchhhhhhhhhhhhhhccccccccccccccccccccccccccc
Q 006667 376 VPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVN 455 (636)
Q Consensus 376 i~kSYLEli~lek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (636)
||+||||||||||+++++|+||||||+|||+|+++|+||||||+|||||||+|++++|||||||+||+||++||++++++
T Consensus 400 i~~SYlE~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (656)
T PLN02318 400 IPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLVSSPKEALSRASADRRNKNLKSGLSHSYSTQRDKNLSKLTGLAVT 479 (656)
T ss_pred ccccHHHHHHHHHhHHHHhhccHHhhhhcccccccccCcHHHhhhhhhhhhhhhcccCcccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccchhHHHHHHHHhhHhHhHHHHHHHHHHhhhcccccccCcccccccccccccCCCCCcceeecc
Q 006667 456 NRRFDGRTPESPASLANQGVINQLSEQISTLNERMDEFTSRIEEMNTKFAIRKVSASQQNLALQAEACNGSGPTSLFMTG 535 (636)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (636)
+||||+|++++||++ |||+|+|||||||+|||||||||||||||||||+++|+||||||+|+|+|+||||||||||++|
T Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (656)
T PLN02318 480 NRRFDERNSESPAAL-NQGAITQLSEQISSLNERMDEFTSRIEELNSKLSIKKNSPSQQNLALQAEACNGSAPTSYFVSG 558 (656)
T ss_pred ccccCCCCCCCchhh-ccchHHHHHHhhcchhhhhHHHHHHHHHHhhccccccCChhhhhhhccccccCCCCcchhhhcc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCcccccccchhHHHHHHHhhhhHHHHHhHhhHHHHHHHhhhhcccccccCCCCceeeccccccce
Q 006667 536 LANGSLTGSVLPNSSSSSQLARESPLMEEVLLVARGQRQIMHQLDSISNLLHEYWGERTRQERTDRPSRVIDVDSIGVPL 615 (636)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (636)
++||+|||++||+|||||||++|+||||||..++|||||||||||||+|||||++|||++.. .+++.+.++++..+|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 636 (656)
T PLN02318 559 LGNGSLTGSILPLSSSSSQLAKESPLMEEILGIARGQRQVMHQLDNLSNLLHESLGERSGRN--RRNSRLLNVDSSQLPL 636 (656)
T ss_pred CCCcccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhhccccccCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999655 4566778899999999
Q ss_pred eeeeeccceeeeeeccccc
Q 006667 616 ILTLAVGGLGLFLFKGLTF 634 (636)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~ 634 (636)
+++||+||+|+|+|+++.+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~ 655 (656)
T PLN02318 637 ILSLAIGGIGIFLFKRLKN 655 (656)
T ss_pred HHHHHHhhhhhhhhhhhhc
Confidence 9999999999999999865
No 2
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=351.59 Aligned_cols=192 Identities=35% Similarity=0.582 Sum_probs=171.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcccccCCcc------cccCCCCCcccccHHHHHHHHHhhhCCCceee
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 113 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDdY~~~~r------~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~i 113 (636)
.+|||+|||||||||||++|.+.|+ .+.+||+|+||+... ....|||||+|||+++|.++|..|++|+.+..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~~ 88 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVDL 88 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCcccc
Confidence 5899999999999999999999998 688999999986422 12469999999999999999999999999999
Q ss_pred eeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhc
Q 006667 114 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 192 (636)
Q Consensus 114 PvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~ 192 (636)
|.|||.+|.|.. +++.+.|.+||||||+|+|+ +++++++|+|||||+|.|+|++||+.||+.+||+++++++++|...
T Consensus 89 P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~ 167 (218)
T COG0572 89 PVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKT 167 (218)
T ss_pred cccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 999999999975 67888999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred CCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhc
Q 006667 193 VYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMS 245 (636)
Q Consensus 193 VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~ 245 (636)
|+|||++||+|++++||+||| .+..|.+ +..++...|...+.
T Consensus 168 vkp~~~~fIeptk~~ADiiip------~~~~n~v-----av~~l~~~I~~~~~ 209 (218)
T COG0572 168 VRPMYEQFIEPTKKYADIIIP------SGGKNEV-----AVDLLQAKIASSLS 209 (218)
T ss_pred hChhhhhccCcccccceEEee------cCCccee-----ehhHHHHHHHHHhh
Confidence 999999999999999999997 3445665 44555555655443
No 3
>PTZ00301 uridine kinase; Provisional
Probab=100.00 E-value=5.6e-38 Score=312.41 Aligned_cols=194 Identities=29% Similarity=0.437 Sum_probs=169.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC----C--CcEEEEcccccCCccc------ccCCCCCcccccHHHHHHHHHhhhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM----P--SIAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKE 107 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L----~--~v~VIsmDdY~~~~r~------~dgnfD~P~afD~dlL~~~L~~Lk~ 107 (636)
+..+|||+|||||||||||+.|++.+ + .+.++++|+||+.... ...+||+|.+||++.|.++|..|++
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~ 81 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKS 81 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHc
Confidence 45799999999999999999998765 2 2569999999865321 1359999999999999999999999
Q ss_pred CCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHH
Q 006667 108 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 186 (636)
Q Consensus 108 Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl 186 (636)
|+.+..|.|||..+.+.. +...+++.+||||||+|+|+ +++++++|++|||++|.|+|+.||+.||+.+||+++++++
T Consensus 82 g~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~ 160 (210)
T PTZ00301 82 GKTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVI 160 (210)
T ss_pred CCcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHH
Confidence 999999999999998875 55678888999999999986 7899999999999999999999999999999999999999
Q ss_pred HHHHhcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhc
Q 006667 187 HQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMS 245 (636)
Q Consensus 187 ~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~ 245 (636)
++|.++++|+|.+||+|++.+||+||+++ .+|.+ +..++..+|.++|.
T Consensus 161 ~~~~~~v~~~~~~~I~p~k~~ADiIi~~~------~~~~~-----~~~~~~~~~~~~~~ 208 (210)
T PTZ00301 161 EQYEATVRPMYYAYVEPSKVYADIIVPSW------KDNSV-----AVGVLRAKLNHDLE 208 (210)
T ss_pred HHHHHhhcccHHHHcCccccCCcEEEcCC------CcchH-----HHHHHHHHHHHHcc
Confidence 99999999999999999999999999743 34555 55677777777764
No 4
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=100.00 E-value=1.8e-35 Score=287.80 Aligned_cols=171 Identities=36% Similarity=0.640 Sum_probs=148.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC--C------cEEEEcccccCCcc--------cccCCCCCcccccHHHHHHHHHhhh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP--S------IAVITMDNYNDSSR--------IIDGNFDDPRLTDYDTLLENIRGLK 106 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~--~------v~VIsmDdY~~~~r--------~~dgnfD~P~afD~dlL~~~L~~Lk 106 (636)
||+|+|+|||||||||+.|+..|+ + +.++++|+|++... ...++|++|+++|++.|.++|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999986 2 46889999875321 1246899999999999999999999
Q ss_pred CCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHH
Q 006667 107 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 185 (636)
Q Consensus 107 ~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeV 185 (636)
+|+.+.+|.|||.++.+..+ .....+.+||||||+|+++ +.+++++|++|||++|.++++.||+.||+.+||++++++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~-~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPW-IIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEE-EEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCcccccccccccccceee-eeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 99999999999999988762 3446788999999999998 679999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 186 IHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 186 l~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
+++|. .++|+|.+||+|++++||+||++.
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~~ 188 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPSG 188 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEESC
T ss_pred EEEee-cCChhhhhheeccccccEEEECCC
Confidence 99998 999999999999999999999853
No 5
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=100.00 E-value=4.4e-34 Score=293.37 Aligned_cols=170 Identities=21% Similarity=0.317 Sum_probs=150.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCccc-----------ccCCCCC--cccccHHHHHHHHHhh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-----------IDGNFDD--PRLTDYDTLLENIRGL 105 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~-----------~dgnfD~--P~afD~dlL~~~L~~L 105 (636)
+|+|+|+|||||||++++|.+.|+ .+.+|++|+||+..+. ...|||| |+|+|+++|.++|..|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999999875 3789999999875331 2369999 9999999999999999
Q ss_pred hCCCceeeeeeecc----------CCcccCcceeecCCCceEEEEehhhhh----hcccCCccEEEEEeCChhhHHHHHH
Q 006667 106 KEGKAVQVPIYDFK----------SSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRV 171 (636)
Q Consensus 106 k~Gk~I~iPvYDf~----------t~~R~~~eti~v~~~dVIIVEGiyaL~----~eLRdl~DLKIFVDad~D~RL~RRI 171 (636)
++|+.++.|+|++. .+++..|+. ...+.+|||+||++.++ .++++++|+||||+++.++|++|||
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~-~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWED-LPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCccc-ccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999873 355554432 35789999999999544 5899999999999999999999999
Q ss_pred hhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEeC
Q 006667 172 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 214 (636)
Q Consensus 172 ~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN 214 (636)
+||+.+||++.|+|+++|+.++ |+|.+||+|++.+|||+|..
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQR 201 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEec
Confidence 9999999999999999999998 99999999999999999964
No 6
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.4e-33 Score=309.79 Aligned_cols=395 Identities=24% Similarity=0.290 Sum_probs=333.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC---------CcEEEEcccccCC---c-----ccccCCCCCcccccHHHHHHHH
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDS---S-----RIIDGNFDDPRLTDYDTLLENI 102 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~---------~v~VIsmDdY~~~---~-----r~~dgnfD~P~afD~dlL~~~L 102 (636)
...+|++.|+++|||||++.++.+.+. ++..+++|.||+. + ...+++||+|++||++.+...+
T Consensus 43 ~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~~~ 122 (473)
T KOG4203|consen 43 EPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYLTL 122 (473)
T ss_pred ceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHHHH
Confidence 567999999999999999999888763 5888999987652 1 1125899999999999999999
Q ss_pred HhhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCC
Q 006667 103 RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 181 (636)
Q Consensus 103 ~~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrs 181 (636)
+.+++|+.+..|.|+|.+|.+...+...+.+.+++|+||++++| .++++++|+++|||++.|.|+.||+.||+.++|++
T Consensus 123 ~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g~~ 202 (473)
T KOG4203|consen 123 KNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERGRD 202 (473)
T ss_pred hcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhccc
Confidence 99999999999999999999977677788999999999999999 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcccccccccceeeeEec
Q 006667 182 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLL 261 (636)
Q Consensus 182 lEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~~~~~~~e~~~DIYLl 261 (636)
++.++.||..+++|.|..||+|++++||++|+. +..|.+ +.++++.+|...|......
T Consensus 203 l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~------~~~n~v-----ai~l~~~~i~~~L~~~~~~----------- 260 (473)
T KOG4203|consen 203 LESILTQYSTFVKPAFEEFILPTKKYADVIIPR------GGDNDV-----AIDLIVQHILSILAEKSYV----------- 260 (473)
T ss_pred HHHHHHHHHhhcCchHHHHhhHHHHhhhheeec------cccccc-----cceeeehhhhhhhhccccc-----------
Confidence 999999999999999999999999999999974 444554 5566666666666432111
Q ss_pred CCCCCcccccceEEeeecCCeEEEEEeeeecCCCcccccceeEEEeeechhhhhhcCCeEEEEEEeeeeeeeeCCEEEEe
Q 006667 262 PPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKT 341 (636)
Q Consensus 262 pPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v~~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~l 341 (636)
T Consensus 261 -------------------------------------------------------------------------------- 260 (473)
T KOG4203|consen 261 -------------------------------------------------------------------------------- 260 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccCcceEEEecccHHHHHHHHHHcCCCCCcccchhHHHHHhhhccccccCCCh--hhhcccccCcccccC--chhh
Q 006667 342 DWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSYVPRTYIEQIQLEKLVNDVMALPD--DLKTKLSIDDDLVSS--PKEA 417 (636)
Q Consensus 342 D~ve~Lg~~FveIeg~~r~~v~~~~~~Lgl~G~~i~kSYLEli~lek~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~ 417 (636)
++.++++.+|+ +++.+++...+...+ |...
T Consensus 261 ----------------------------------------------~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~ 294 (473)
T KOG4203|consen 261 ----------------------------------------------RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSF 294 (473)
T ss_pred ----------------------------------------------cccccceecCCccccCCceeEeecCCcCCCCHHH
Confidence 55567777777 888888776666655 4444
Q ss_pred hhhhhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcccccchhHHHHHHHHhhHhHhHHHHHH-H
Q 006667 418 LSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVNNRRFDGRTPESPASLANQGVINQLSEQISTLNERMDEFTS-R 496 (636)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 496 (636)
.+...+ |+++.+.+.++.|...+.+.+.+++...++.. +...+...|....+.+.+.+.+.+ +.||++++. |
T Consensus 295 ~~~~~v--rl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~-~~i~gv~i~r~g~~~~~alr~~~~----~vri~~il~qr 367 (473)
T KOG4203|consen 295 YSDHLV--RLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFC-KQICGVSIPRSGESMETALRAACK----GVRIGKILIQR 367 (473)
T ss_pred HHHHHH--HHHhhcccCcccceeeeEecccccchhccccc-chhccCCCCcchhHHHHHHHHHcC----CceeeeeEeec
Confidence 443333 59999999999999999999999999999988 777878888766666666666666 999999999 9
Q ss_pred HHHhhhcccccccCccccccc---ccccccCCCCCcceeecccCCCccccccccCCCCcccccccchhHHHHHHHhhhhH
Q 006667 497 IEEMNTKFAIRKVSASQQNLA---LQAEACNGSGPTSLFMTGLANGSLTGSVLPNSSSSSQLARESPLMEEVLLVARGQR 573 (636)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (636)
.++.+.+-......|.+++.- +.+..|||.++...|...+.+| +....+...+|....+.++|+....++++
T Consensus 368 ~~~t~~~~l~~~~lP~~is~~V~ll~p~~~tg~~~~~a~~~ll~~g-----v~~~~i~~~~ll~~~~~~~~~~~~f~~v~ 442 (473)
T KOG4203|consen 368 DEETGEPELHYEKLPKDISDRVLLLDPVLATGNSAMMAIILLLDHG-----VPEENIIFLNLLAAPQGIHEVAYAFPKVK 442 (473)
T ss_pred hhhccchhhhhhhCccccccceeeecchhhcchhHHHHHHHHHhCC-----CcHHHhHHHHHHhhhhhhhHHHHhcccce
Confidence 999888766666777777777 8888999999999999999999 57778888999999999999999999999
Q ss_pred HHHHhHhhHHHHHHHhhhhcc
Q 006667 574 QIMHQLDSISNLLHEYWGERT 594 (636)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~ 594 (636)
++++|+|...|..+....+..
T Consensus 443 ~v~~~~d~~~~~~~~~~pg~g 463 (473)
T KOG4203|consen 443 IVTSQIDKLLNEKRYVVPGLG 463 (473)
T ss_pred eehhhhcccccccceECcccc
Confidence 999999999998777665443
No 7
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.97 E-value=1.1e-31 Score=260.05 Aligned_cols=169 Identities=44% Similarity=0.696 Sum_probs=150.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCc---ccccCCCCCcccccHHHHHHHHHhhhCCCceeeee
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 115 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~---r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPv 115 (636)
+|+|+|+|||||||||+.|++.++ ++.+|++|+|+.+. ....++||+|.++|++.|.++|..|++|+.+.+|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 589999999999999999999963 58899999998643 23457999999999999999999999999999999
Q ss_pred eeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhh-HHHHHHhhhhhhcCCCHHHHHHHHHhcCC
Q 006667 116 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF-DLVKRVFRDIQRVGQEPEEIIHQISETVY 194 (636)
Q Consensus 116 YDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~-RL~RRI~RDi~eRGrslEeVl~qyl~~Vr 194 (636)
||+.++.+..+....+++.+|||+||+|++++.+++++|++|||++|.++ |+.||+.||+.+||++.++++.+| . +.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~-~-~~ 158 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW-P-SV 158 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-c-cc
Confidence 99999988764456778999999999999999999999999999999998 999999999999999999999996 3 45
Q ss_pred cchhhhc-cCCcCCccEEEe
Q 006667 195 PMYKAFI-EPDLQTAHIKII 213 (636)
Q Consensus 195 P~~ekfI-ePtk~~ADIIIp 213 (636)
|+++.|+ .|.+++||+|+.
T Consensus 159 ~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 159 PSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCchhhcCCCchhccceecc
Confidence 6666555 679999999983
No 8
>PRK15453 phosphoribulokinase; Provisional
Probab=99.97 E-value=1.5e-30 Score=269.02 Aligned_cols=171 Identities=20% Similarity=0.355 Sum_probs=147.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCccc-----------ccCCCCC--cccccHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-----------IDGNFDD--PRLTDYDTLLENIR 103 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~-----------~dgnfD~--P~afD~dlL~~~L~ 103 (636)
..+|+|+|+|||||||+|+.|++.|+ ++.+|++|+||...+. ...|||| |+|+|+++|.++|.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l~ 84 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLFR 84 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHHH
Confidence 45899999999999999999999885 3789999999864321 1138999 99999999999999
Q ss_pred hhhCCCceeeeeeecc-----CCcccC-----cceeecCCCceEEEEehhhhh----hcccCCccEEEEEeCChhhHHHH
Q 006667 104 GLKEGKAVQVPIYDFK-----SSSRIG-----YRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVK 169 (636)
Q Consensus 104 ~Lk~Gk~I~iPvYDf~-----t~~R~~-----~eti~v~~~dVIIVEGiyaL~----~eLRdl~DLKIFVDad~D~RL~R 169 (636)
.|++|+.+..|.|++. .+.+.. |+.+ .++.+|||+||++.++ ..+++++|++|||+++.++|++|
T Consensus 85 ~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i-~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ir 163 (290)
T PRK15453 85 EYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPL-PEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQ 163 (290)
T ss_pred HHhcCCCcceeeccccccccccCCCCCCccCCceEe-cCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHH
Confidence 9999999999998632 244332 2222 3579999999999985 36899999999999999999999
Q ss_pred HHhhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEe
Q 006667 170 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 213 (636)
Q Consensus 170 RI~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIp 213 (636)
||+||+.+||++.|+|+++|+.++ |+|.+||.|++.+|||++-
T Consensus 164 RI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 164 KIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 999999999999999999999996 9999999999999999884
No 9
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.97 E-value=2.3e-30 Score=253.65 Aligned_cols=194 Identities=32% Similarity=0.528 Sum_probs=167.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcccccCCcc------cccCCCCCcccccHHHHHHHHHhhhCCCce
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKAV 111 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDdY~~~~r------~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I 111 (636)
+..+|+|+|+|||||||||+.|...++ .+.++++|+|+.... ....+|++|.++|++.+.++|..++.|+.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~v 84 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKAI 84 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCcc
Confidence 456899999999999999999999984 578999999975421 123578999999999999999999999999
Q ss_pred eeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHH
Q 006667 112 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 190 (636)
Q Consensus 112 ~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl 190 (636)
.+|.||+.++.+.. +.+...+.++||+||+++++ +.+++++|++|||++|.++|+.|++.||...+|++.++++++|.
T Consensus 85 ~~p~~d~~~~~~~~-~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~ 163 (209)
T PRK05480 85 EIPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYL 163 (209)
T ss_pred ccCcccccccccCC-CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHH
Confidence 99999999988765 44556788999999999998 68999999999999999999999999999999999999999999
Q ss_pred hcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhc
Q 006667 191 ETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMS 245 (636)
Q Consensus 191 ~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~ 245 (636)
.+++|.|.+|++|.+++||+||.|+.++. . +.+.+.++|.+++.
T Consensus 164 ~~~~~~~~~~i~~~~~~AD~vI~~~~~~~------~-----~~~~l~~~i~~~~~ 207 (209)
T PRK05480 164 STVRPMHLQFIEPSKRYADIIIPEGGKNR------V-----AIDILKAKIRQLLE 207 (209)
T ss_pred HhhhhhHHhhccHhhcceeEEecCCCcch------H-----HHHHHHHHHHHHhh
Confidence 99999999999999999999998764222 1 44566677776664
No 10
>PLN02348 phosphoribulokinase
Probab=99.97 E-value=2.6e-30 Score=277.19 Aligned_cols=169 Identities=27% Similarity=0.447 Sum_probs=150.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC-------------------CcEEEEcccccCCccc----ccCCCCCcccccHHHH
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP-------------------SIAVITMDNYNDSSRI----IDGNFDDPRLTDYDTL 98 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~-------------------~v~VIsmDdY~~~~r~----~dgnfD~P~afD~dlL 98 (636)
.+|||+|+|||||||||+.|++.|+ .+.+|++|+||..++. ...++.+|.++||++|
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~dfDll 129 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLM 129 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccHHHH
Confidence 4777799999999999999999985 2579999999864432 1246678999999999
Q ss_pred HHHHHhhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhh
Q 006667 99 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 177 (636)
Q Consensus 99 ~~~L~~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~e 177 (636)
.++|..|++|+.+.+|+||+.++..... ..+++.+||||||+|+++ +.+++++|++|||+++.++++.||++||+.+
T Consensus 130 ~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI~RD~~e 207 (395)
T PLN02348 130 YEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQRDMAE 207 (395)
T ss_pred HHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHHHhhHhh
Confidence 9999999999999999999999876543 346789999999999998 5799999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEe
Q 006667 178 VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 213 (636)
Q Consensus 178 RGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIp 213 (636)
||++.++++++|. .++|+|.+||+|.+++||+||.
T Consensus 208 RG~S~EeV~~~i~-ar~pd~~~yI~pqk~~ADiVI~ 242 (395)
T PLN02348 208 RGHSLESIKASIE-ARKPDFDAYIDPQKQYADVVIE 242 (395)
T ss_pred cCCCHHHHHHHHH-hcCcchhhhcccccccCCEEEE
Confidence 9999999999986 5699999999999999999994
No 11
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.97 E-value=1.2e-30 Score=260.81 Aligned_cols=173 Identities=18% Similarity=0.275 Sum_probs=148.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEcccccCCccc--cc---CCCCCcccccHHHHHHHHHhhhC-CCc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI--ID---GNFDDPRLTDYDTLLENIRGLKE-GKA 110 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~~~~r~--~d---gnfD~P~afD~dlL~~~L~~Lk~-Gk~ 110 (636)
||||+|++||||||||+.|+..+. .+.+|+||+||..... .. .++++|+++|++.+.+.|..|++ ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999872 4789999999865321 11 24678999999999999999999 479
Q ss_pred eeeeeeeccCCcccCcceeecCCCceEEEEehhhhhh-c-----ccCCccEEEEEeCChhhH---HHHHHhhhhhhcCCC
Q 006667 111 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-K-----LRPLIDLRVSVTGGVHFD---LVKRVFRDIQRVGQE 181 (636)
Q Consensus 111 I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~-e-----LRdl~DLKIFVDad~D~R---L~RRI~RDi~eRGrs 181 (636)
+.+|.||+..+.+.......+++.+||||||+|+|+. . +++++|++|||++|.+++ +.+|..|++.++|++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999988764333467889999999999984 4 999999999999999995 788888898899999
Q ss_pred HHHHHHH----------------HHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 182 PEEIIHQ----------------ISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 182 lEeVl~q----------------yl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
+++++.| |.+.++|++++||.|++.+||+||+.+
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 9877764 778999999999999999999999754
No 12
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.96 E-value=2.9e-28 Score=239.46 Aligned_cols=176 Identities=35% Similarity=0.584 Sum_probs=157.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcccccCCcc------cccCCCCCcccccHHHHHHHHHhhhCCCc
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKA 110 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDdY~~~~r------~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~ 110 (636)
-+..+|+|+|++|||||||++.|...++ .+.++++|+|+.... ....+|++|.++|++.+.+.|..|+.|+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~ 83 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSP 83 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCC
Confidence 3467999999999999999999999886 588999999865321 12357889999999999999999999999
Q ss_pred eeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHH
Q 006667 111 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 189 (636)
Q Consensus 111 I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qy 189 (636)
+.+|.||+..+.+.. +.+.+++.++||+||+++++ +.+++.+|++|||++|.++|+.|++.||...||++.++++.+|
T Consensus 84 v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~ 162 (207)
T TIGR00235 84 IDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQY 162 (207)
T ss_pred EecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 999999999887743 45567888999999999987 5688999999999999999999999999999999999999999
Q ss_pred HhcCCcchhhhccCCcCCccEEEeCC
Q 006667 190 SETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 190 l~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
...++|+|.+|++|.+.+||+||.|+
T Consensus 163 ~~~~~~~~~~~i~~~~~~Ad~vi~~~ 188 (207)
T TIGR00235 163 RKTVRPMYEQFVEPTKQYADLIIPEG 188 (207)
T ss_pred HHhhhhhHHHhCcccccccEEEEcCC
Confidence 99999999999999999999999753
No 13
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.95 E-value=4.7e-28 Score=235.24 Aligned_cols=174 Identities=34% Similarity=0.595 Sum_probs=154.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcccccCCcc------cccCCCCCcccccHHHHHHHHHhhhCCCceeee
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 114 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDdY~~~~r------~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iP 114 (636)
+|+|+|++||||||+|+.|...++ .+.++++|+|+.... ....+|++|.++|++.+.+.|..++.|+.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 589999999999999999999984 589999999975321 123478899999999999999999999999999
Q ss_pred eeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcC
Q 006667 115 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 193 (636)
Q Consensus 115 vYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~V 193 (636)
.||+..+.+.. ....+.+.++||+||.++++ +.+++.+|++|||++|.++++.||+.||..+||++.++++++|..+.
T Consensus 81 ~~d~~~~~~~~-~~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLK-ETVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccC-CceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 99999998764 23456788999999999998 67889999999999999999999999999999999999999999999
Q ss_pred CcchhhhccCCcCCccEEEeCCCC
Q 006667 194 YPMYKAFIEPDLQTAHIKIINKFN 217 (636)
Q Consensus 194 rP~~ekfIePtk~~ADIIIpN~f~ 217 (636)
+|.|..|++|.+++||+||.|+.+
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~ 183 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGD 183 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCC
Confidence 999999999999999999986543
No 14
>PRK05439 pantothenate kinase; Provisional
Probab=99.95 E-value=1.3e-27 Score=250.76 Aligned_cols=175 Identities=18% Similarity=0.204 Sum_probs=147.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEcccccCCccc--cc---CCCCCcccccHHHHHHHHHhhhCCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI--ID---GNFDDPRLTDYDTLLENIRGLKEGK 109 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~~~~r~--~d---gnfD~P~afD~dlL~~~L~~Lk~Gk 109 (636)
+.+|||+|++||||||+|+.|++.++ .+.+|++|+||.+... .. .++++|++||++.|.+.|..|++|+
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~ 165 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGK 165 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCC
Confidence 34777799999999999999998763 4789999999865422 11 2578899999999999999999999
Q ss_pred c-eeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcc------cCCccEEEEEeCChhhHHHHHHhhhhhh----
Q 006667 110 A-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKL------RPLIDLRVSVTGGVHFDLVKRVFRDIQR---- 177 (636)
Q Consensus 110 ~-I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eL------Rdl~DLKIFVDad~D~RL~RRI~RDi~e---- 177 (636)
. +.+|+||+..+.+...+...+.+.+||||||+++|+ +.. ++++|++||||+|.+.+..|++.|.+..
T Consensus 166 ~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~ 245 (311)
T PRK05439 166 PNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETA 245 (311)
T ss_pred CeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhh
Confidence 7 999999999998875455667889999999999996 444 8999999999999999888888887652
Q ss_pred -----------cCCCHHH----HHHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 178 -----------VGQEPEE----IIHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 178 -----------RGrslEe----Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
+|.+.++ +.++|...+.|++++||.|++.+||+||+.+
T Consensus 246 ~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 246 FSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred hcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 3555554 4567788999999999999999999999754
No 15
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.95 E-value=1.3e-27 Score=248.81 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=144.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEcccccCCccc--c---cCCCCCcccccHHHHHHHHHhhhCCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI--I---DGNFDDPRLTDYDTLLENIRGLKEGK 109 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~~~~r~--~---dgnfD~P~afD~dlL~~~L~~Lk~Gk 109 (636)
+.+|||+||+||||||+|+.|...+. .+.++++|+|+..... . ..++++|+++|++.+.+.|..+++|+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~ 141 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGK 141 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCC
Confidence 34788899999999999999877763 4789999999865321 1 13678899999999999999999998
Q ss_pred c-eeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hc----------ccCCccEEEEEeCChhhHHHHHHhhhhh-
Q 006667 110 A-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EK----------LRPLIDLRVSVTGGVHFDLVKRVFRDIQ- 176 (636)
Q Consensus 110 ~-I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~e----------LRdl~DLKIFVDad~D~RL~RRI~RDi~- 176 (636)
. +.+|+||+.++.+...+...+.+.+||||||+++|+ +. +++++|++||||+|.+.++.|++.|...
T Consensus 142 ~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~l 221 (290)
T TIGR00554 142 PNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKF 221 (290)
T ss_pred CceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 5 999999999999876544556889999999999997 44 4699999999999999999888888643
Q ss_pred -hc-------------CCCHHH----HHHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 177 -RV-------------GQEPEE----IIHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 177 -eR-------------GrslEe----Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
++ |.+.++ +++.|.....|++.+||.|++.+||+||+.+
T Consensus 222 ~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~ 278 (290)
T TIGR00554 222 REGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKG 278 (290)
T ss_pred HHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecC
Confidence 22 344433 3446799999999999999999999999754
No 16
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=230.33 Aligned_cols=148 Identities=26% Similarity=0.389 Sum_probs=133.2
Q ss_pred HHHHHHHhccc--ccccccceeeeEecCCCCCcccccceEEee-ecCCeEEEEEeeeecCCCcccccceeEEEee----e
Q 006667 237 VDEIKAVMSKE--HTETTEETYDIYLLPPGEDPDACQSYLRMR-NRDGKYNLMFEEWVTDSPFIISPRITFEVSV----R 309 (636)
Q Consensus 237 ~d~I~~~L~~~--~~~~~e~~~DIYLlpPt~df~~tdeaLRiR-~~dg~~~Ltykgp~~d~~fiikPR~efev~v----~ 309 (636)
.+.|+..|.+. .....+.+.|+||.+||+||+.||+|||+| ..+|.+.||||||++|..+ |+|+|||+.+ .
T Consensus 13 ~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~--k~r~E~E~~v~D~~~ 90 (178)
T COG1437 13 LEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRES--KTREEIEIEVSDVEK 90 (178)
T ss_pred HHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccc--cceeeEEEEeCCHHH
Confidence 56677888764 446677888999999999999999999999 7889999999999999999 9999999999 4
Q ss_pred chhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEec---------ccHHHHHHHHHHcCCC-CCcccch
Q 006667 310 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQG---------RDRLYVKYVGEQLGLD-GSYVPRT 379 (636)
Q Consensus 310 ~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg---------~~r~~v~~~~~~Lgl~-G~~i~kS 379 (636)
+...|.+|||..++.|+|.|++|..|+++|+||.|+|||. |+|||- ..++.+.+++.+|||. ++.+++|
T Consensus 91 ~~~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~s 169 (178)
T COG1437 91 ALEILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRS 169 (178)
T ss_pred HHHHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchh
Confidence 5566999999999999999999999999999999999995 999992 2568899999999996 7999999
Q ss_pred hHHHHHhhh
Q 006667 380 YIEQIQLEK 388 (636)
Q Consensus 380 YLEli~lek 388 (636)
||||+ +++
T Consensus 170 YlELl-~~~ 177 (178)
T COG1437 170 YLELL-LEK 177 (178)
T ss_pred HHHHH-hcc
Confidence 99999 543
No 17
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.94 E-value=2.8e-26 Score=236.62 Aligned_cols=168 Identities=28% Similarity=0.490 Sum_probs=147.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcccccCCccc----ccCCCCCcccccHHHHHHHHHhhhCCCceeeeee
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSRI----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 116 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDdY~~~~r~----~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvY 116 (636)
+|+|+|++|||||||++.|+..++ ++.+|++|+|+...+. ....+.+|++.+++.+.+++..+++|+.+.+|+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 589999999999999999999986 5789999999754321 1234557999999999999999999999999999
Q ss_pred eccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCc
Q 006667 117 DFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 195 (636)
Q Consensus 117 Df~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP 195 (636)
++.++.... ...+++.++||+||+++++ +.+++++|++|||+++.++++.||++|++.++|++.++++++|.. .+|
T Consensus 81 ~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r~~ 157 (273)
T cd02026 81 NHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-RKP 157 (273)
T ss_pred cccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-hch
Confidence 999886543 2345778999999999987 589999999999999999999999999999999999999999965 599
Q ss_pred chhhhccCCcCCccEEEe
Q 006667 196 MYKAFIEPDLQTAHIKII 213 (636)
Q Consensus 196 ~~ekfIePtk~~ADIIIp 213 (636)
.+.+||+|.+.+||+||.
T Consensus 158 ~~~~~I~P~~~~ADvVI~ 175 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQ 175 (273)
T ss_pred hHHHHhccccccCcEEEE
Confidence 999999999999999995
No 18
>PRK07429 phosphoribulokinase; Provisional
Probab=99.93 E-value=1.6e-25 Score=236.65 Aligned_cols=170 Identities=27% Similarity=0.460 Sum_probs=147.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcccccCCccc----ccCCCCCcccccHHHHHHHHHhhhCCCceeeee
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSRI----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 115 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDdY~~~~r~----~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPv 115 (636)
.+|+|+|+||||||||++.|++.|+ .+.++++|+|+...+. ...+.-+|.+.|++.+.+++..|++|+.+.+|.
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I~~P~ 88 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPILKPI 88 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCceecce
Confidence 4788899999999999999999986 4789999999753221 112334689999999999999999999999999
Q ss_pred eeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCC
Q 006667 116 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 194 (636)
Q Consensus 116 YDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~Vr 194 (636)
||+..+.... ...+.+.++||+||+++++ ..+++++|++|||++|.++++.||++|++.++|++.+++.++|.. .+
T Consensus 89 yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~-r~ 165 (327)
T PRK07429 89 YNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEA-RE 165 (327)
T ss_pred eecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHH-hC
Confidence 9999886543 2346778999999999887 578899999999999999999999999999999999999988865 59
Q ss_pred cchhhhccCCcCCccEEEeC
Q 006667 195 PMYKAFIEPDLQTAHIKIIN 214 (636)
Q Consensus 195 P~~ekfIePtk~~ADIIIpN 214 (636)
|.+.+||+|.+.+||+||.+
T Consensus 166 pd~~~yI~P~k~~ADiVI~~ 185 (327)
T PRK07429 166 PDFEAYIRPQRQWADVVIQF 185 (327)
T ss_pred ccHhhhhcccccCCCEEEEc
Confidence 99999999999999999963
No 19
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.92 E-value=1.9e-24 Score=209.34 Aligned_cols=146 Identities=19% Similarity=0.253 Sum_probs=126.9
Q ss_pred HHHHHHHhcccc--cccccceeeeEecCCCCCcccccceEEeeecCCeEEEEEeeeecCCCcccccceeEEEee----ec
Q 006667 237 VDEIKAVMSKEH--TETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSV----RL 310 (636)
Q Consensus 237 ~d~I~~~L~~~~--~~~~e~~~DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v----~~ 310 (636)
.+.+...|.... ......+.|+||.+|+++|..++.|||+|..++.+.||||+|..+..+ +.|.|+|+.| .+
T Consensus 13 ~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~--~~~~E~e~~v~d~~~~ 90 (174)
T TIGR00318 13 KEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNES--KTRKEIEFKIEDIENA 90 (174)
T ss_pred HHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcc--eEEEEEEEEECCHHHH
Confidence 345566665432 234556779999999999999999999999999999999999999887 7788888888 45
Q ss_pred hhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEeccc---------HHHHHHHHHHcCCCCCcccchhH
Q 006667 311 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD---------RLYVKYVGEQLGLDGSYVPRTYI 381 (636)
Q Consensus 311 ~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg~~---------r~~v~~~~~~Lgl~G~~i~kSYL 381 (636)
..+|.+|||.+++.+.|.|+.|..++++|++|+|+||| +|||||+.. ++.+.+++.+|||.++.+++||+
T Consensus 91 ~~iL~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ 169 (174)
T TIGR00318 91 LQILKKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYL 169 (174)
T ss_pred HHHHHHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHH
Confidence 66799999999999999999999999999999999999 599999763 46899999999998899999999
Q ss_pred HHHH
Q 006667 382 EQIQ 385 (636)
Q Consensus 382 Eli~ 385 (636)
||+.
T Consensus 170 ell~ 173 (174)
T TIGR00318 170 ELLS 173 (174)
T ss_pred HHhh
Confidence 9983
No 20
>PRK06696 uridine kinase; Validated
Probab=99.92 E-value=2e-24 Score=215.05 Aligned_cols=174 Identities=18% Similarity=0.248 Sum_probs=140.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCcccc-cCCCCCc-----ccccHHHHHHHHHhh-hCCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRII-DGNFDDP-----RLTDYDTLLENIRGL-KEGK 109 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~~-dgnfD~P-----~afD~dlL~~~L~~L-k~Gk 109 (636)
..+|+|+|+|||||||||+.|++.|+ .+.+++||+|+.+.... ..++++| .++|++.|.+.+..+ ..+.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~~~~ 101 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPNG 101 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhccCCC
Confidence 34777799999999999999999984 24567799998765321 1234444 689999999998774 3433
Q ss_pred --ceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHH
Q 006667 110 --AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 187 (636)
Q Consensus 110 --~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~ 187 (636)
.+..|.||+..+..........++.++||+||++++...+++++|++|||++|.++++.|++.||...+|. .+++..
T Consensus 102 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~~~~ 180 (223)
T PRK06696 102 DRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEEAEK 180 (223)
T ss_pred ceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chHHHH
Confidence 57888999988765432344457778999999999888899999999999999999999999999989995 567788
Q ss_pred HHHhcCCcchhhhccCC--cCCccEEEeCC
Q 006667 188 QISETVYPMYKAFIEPD--LQTAHIKIINK 215 (636)
Q Consensus 188 qyl~~VrP~~ekfIePt--k~~ADIIIpN~ 215 (636)
.|..++.|.+..|+.+. +++||+||.|+
T Consensus 181 ~~~~r~~~~~~~y~~~~~p~~~ADivi~n~ 210 (223)
T PRK06696 181 MYLARYHPAQKLYIAEANPKERADVVIDNS 210 (223)
T ss_pred HHHHHHhHHHHHHHhhcChHhhCeEEEECC
Confidence 89899999999987554 89999999765
No 21
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.91 E-value=8e-25 Score=214.90 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=126.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc------ccCCCCCcccccHHHHHHHHHhhhCCCceeeeee
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 116 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~------~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvY 116 (636)
+|+|+|+|||||||+|+.|++.++++.+|++|+|+..... ..++||+|+++|+++|.++|..|++|+.+..|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 5899999999999999999999977999999999865431 1258999999999999999999999987766666
Q ss_pred eccCCcccC-------------cceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhh-cCCC
Q 006667 117 DFKSSSRIG-------------YRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 181 (636)
Q Consensus 117 Df~t~~R~~-------------~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~e-RGrs 181 (636)
++....... ......++.++|||||+++++ +++++++|++|||++|.++++.||+.||... .|--
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 655432210 112345778899999999998 7899999999999999999999999998322 1111
Q ss_pred HHHHHHHHHhcCCcchhhh
Q 006667 182 PEEIIHQISETVYPMYKAF 200 (636)
Q Consensus 182 lEeVl~qyl~~VrP~~ekf 200 (636)
-.+...+|.+.|||+|.++
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 1235678899999999864
No 22
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.88 E-value=2.7e-22 Score=200.59 Aligned_cols=173 Identities=23% Similarity=0.320 Sum_probs=143.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEE-EEcccccCCccc--c---cCCCCCcccccHHHHHHHHHhhhCCC-
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAV-ITMDNYNDSSRI--I---DGNFDDPRLTDYDTLLENIRGLKEGK- 109 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~V-IsmDdY~~~~r~--~---dgnfD~P~afD~dlL~~~L~~Lk~Gk- 109 (636)
..+|+|+|++|||||||++.|+..++ .+.+ +++|+|+..... . ...++.|++||.+.+.+.+..++.|+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~~~~~ 112 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRAGDD 112 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHHcCCC
Confidence 45778899999999999999999885 2456 999999865321 1 12456889999999999999999987
Q ss_pred ceeeeeeeccCCcccCcceeec-CCCceEEEEehhhhhh-----cccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH
Q 006667 110 AVQVPIYDFKSSSRIGYRTLEV-PSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 183 (636)
Q Consensus 110 ~I~iPvYDf~t~~R~~~eti~v-~~~dVIIVEGiyaL~~-----eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE 183 (636)
.+.+|.||+..+.... ....+ +..++||+||.+++.. .+++.+|.+|||++|.+.++.|.+.|+ .++|++.+
T Consensus 113 ~i~~P~yD~~~~~~~~-~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~g~s~~ 190 (229)
T PRK09270 113 EVYWPVFDRSLEDPVA-DAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAGGLSPE 190 (229)
T ss_pred ceecccCCcccCCCCC-CceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-HhcCCCHH
Confidence 9999999998876554 22233 3578999999999863 577899999999999999887777775 47899999
Q ss_pred HHHHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 184 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 184 eVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
++.++|..+..|.+ .||+|.+++||+||.|+.
T Consensus 191 ~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 191 AAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence 99999988888887 699999999999998764
No 23
>PRK07667 uridine kinase; Provisional
Probab=99.87 E-value=5.7e-22 Score=193.84 Aligned_cols=161 Identities=16% Similarity=0.280 Sum_probs=124.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCccc--ccCC--CCC--cccccHHHHHHH-HHhhhCCCc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI--IDGN--FDD--PRLTDYDTLLEN-IRGLKEGKA 110 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~--~dgn--fD~--P~afD~dlL~~~-L~~Lk~Gk~ 110 (636)
.+|||+|++||||||+|+.|++.++ ++.++++|+|+..... ..++ +.. ...+|++.|.+. +..|+.++.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~~~ 97 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNETK 97 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCCCe
Confidence 5778899999999999999999874 4789999998753211 1111 111 235788888866 588999999
Q ss_pred eeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHH
Q 006667 111 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 190 (636)
Q Consensus 111 I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl 190 (636)
+.+|.||+..+.+.. ....+++.+|||+||+|++...+++++|.+|||++|.++++.|++.|+ |.+ ..+|.
T Consensus 98 i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~----~~~----~~~~~ 168 (193)
T PRK07667 98 LTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEET----QKN----LSKFK 168 (193)
T ss_pred EEEeeeccccccccc-cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhccc----HhH----HHHHH
Confidence 999999999876543 334456789999999998888899999999999999999988887654 333 44555
Q ss_pred hcCCcchhhhcc---CCcCCccEEE
Q 006667 191 ETVYPMYKAFIE---PDLQTAHIKI 212 (636)
Q Consensus 191 ~~VrP~~ekfIe---Ptk~~ADIII 212 (636)
....|.+..|+. | +.+||+||
T Consensus 169 ~r~~~a~~~y~~~~~~-~~~ad~i~ 192 (193)
T PRK07667 169 NRYWKAEDYYLETESP-KDRADLVI 192 (193)
T ss_pred HHhHHHHHHHHhhcCh-HhhCcEEe
Confidence 555688888865 5 89999997
No 24
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.79 E-value=9.5e-19 Score=167.84 Aligned_cols=144 Identities=23% Similarity=0.254 Sum_probs=126.0
Q ss_pred HHHHHHHhccc--ccccccceeeeEecCCCCCcccccceEEeeecC--CeEEEEEeeeecCCCcccccceeEEEee----
Q 006667 237 VDEIKAVMSKE--HTETTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVSV---- 308 (636)
Q Consensus 237 ~d~I~~~L~~~--~~~~~e~~~DIYLlpPt~df~~tdeaLRiR~~d--g~~~Ltykgp~~d~~fiikPR~efev~v---- 308 (636)
.+.++..|.+. .......+.|+||..|+.++..++.|||+|..+ +.+.+|||+|..++.+ +.+.|+++.|
T Consensus 11 ~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~--~~~~E~e~~v~~~~ 88 (169)
T cd07890 11 LEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGP--KVREEIETEVADPE 88 (169)
T ss_pred HHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCc--cceEEEEEecCCHH
Confidence 45556666552 223456677999999999999999999999987 9999999999988755 8899999988
Q ss_pred echhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEecc------cHHHHHHHHHHcCCCC-CcccchhH
Q 006667 309 RLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDG-SYVPRTYI 381 (636)
Q Consensus 309 ~~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg~------~r~~v~~~~~~Lgl~G-~~i~kSYL 381 (636)
.+.+.|.+|||.+.+.+.|.|..|..++++|+||+++|||. |+|||+. +.+.+..++..||+.+ ..+++||+
T Consensus 89 ~~~~iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~ 167 (169)
T cd07890 89 AMKEILERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYL 167 (169)
T ss_pred HHHHHHHHcCCceeEEEEEEEEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhh
Confidence 45567899999999999999999999999999999999995 9999987 9999999999999987 78999999
Q ss_pred HH
Q 006667 382 EQ 383 (636)
Q Consensus 382 El 383 (636)
|+
T Consensus 168 ~~ 169 (169)
T cd07890 168 EL 169 (169)
T ss_pred cC
Confidence 85
No 25
>PRK06547 hypothetical protein; Provisional
Probab=99.79 E-value=8.6e-19 Score=169.85 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=117.7
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeee
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 117 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYD 117 (636)
+.+..+|+|+|++||||||||+.|++.+ ++.++++|+|+.... + -..+.+.+...+.. .|++..+| ||
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~~~~-------~-~~~~~~~l~~~~l~--~g~~~~~~-yd 79 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYPGWH-------G-LAAASEHVAEAVLD--EGRPGRWR-WD 79 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceecccc-------c-CChHHHHHHHHHHh--CCCCceec-CC
Confidence 3345688999999999999999999998 588999999985321 1 01244556666655 78888888 99
Q ss_pred ccCCcccCcceeecCCCceEEEEehhhhhhcccCCcc-----EEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhc
Q 006667 118 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 192 (636)
Q Consensus 118 f~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~D-----LKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~ 192 (636)
|..+.+.. ...+.+.++||+||++++++.+++++| ++|||++|.++|+.|++.||.. .....++|
T Consensus 80 ~~~~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~~~~~~~w--- 149 (172)
T PRK06547 80 WANNRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-----YAPHWEMW--- 149 (172)
T ss_pred CCCCCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----hhHHHHHH---
Confidence 99776532 334567789999999999988899999 9999999999999999999842 33334445
Q ss_pred CCcchhhhcc--CCcCCccEEE
Q 006667 193 VYPMYKAFIE--PDLQTAHIKI 212 (636)
Q Consensus 193 VrP~~ekfIe--Ptk~~ADIII 212 (636)
.|..+.|++ +.+.+||+|+
T Consensus 150 -~~~e~~~~~~~~~~~~ad~~~ 170 (172)
T PRK06547 150 -AAQEERHFARYDPRDVADWLG 170 (172)
T ss_pred -HHHHHHHHhcCCChhccEEEe
Confidence 466677775 6789999997
No 26
>PRK08233 hypothetical protein; Provisional
Probab=99.74 E-value=3.4e-17 Score=155.21 Aligned_cols=165 Identities=17% Similarity=0.291 Sum_probs=123.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc------c-cc-CCCCCcccccHHHHHHHHHhhhCCCcee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR------I-ID-GNFDDPRLTDYDTLLENIRGLKEGKAVQ 112 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r------~-~d-gnfD~P~afD~dlL~~~L~~Lk~Gk~I~ 112 (636)
..+|+|+|++||||||+|+.|++.|+.+.++++|.|+.... . .. .+| +.++.+.+.+.+..+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~--- 76 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANY---SEWVLTPLIKDIQELIAKS--- 76 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCCh---hhhhhHHHHHHHHHHHcCC---
Confidence 36899999999999999999999997678899999854211 0 11 122 4677777877777654321
Q ss_pred eeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhc-CCCHHHHHHHHH
Q 006667 113 VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQIS 190 (636)
Q Consensus 113 iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eR-GrslEeVl~qyl 190 (636)
..++||+||.+... +.+++.+|++|||++|.++++.|++.|+.... +.+....+..|.
T Consensus 77 --------------------~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 136 (182)
T PRK08233 77 --------------------NVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYL 136 (182)
T ss_pred --------------------CceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 12678999988765 67889999999999999999999999986432 223445678888
Q ss_pred hcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcc
Q 006667 191 ETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 246 (636)
Q Consensus 191 ~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~ 246 (636)
..++|.|.+++++.+..|+++|.++- ..+.+.++|...|..
T Consensus 137 ~~~~~~y~~~~~~~~~~~~~vId~~~---------------~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 137 NYARPLYLEALHTVKPNADIVLDGAL---------------SVEEIINQIEEELYR 177 (182)
T ss_pred HHHHHHHHHHhhcCccCCeEEEcCCC---------------CHHHHHHHHHHHHHh
Confidence 99999999999988888999985321 235566777777654
No 27
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.69 E-value=1.8e-16 Score=163.42 Aligned_cols=172 Identities=20% Similarity=0.231 Sum_probs=130.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEcccccCCcccc--cC---CCCCcccccHHHHHHHHHhhhCCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRII--DG---NFDDPRLTDYDTLLENIRGLKEGK 109 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~~~~r~~--dg---nfD~P~afD~dlL~~~L~~Lk~Gk 109 (636)
+-||||+|+.|+||||+|+.|+..+. .+.+|.||.|+.+.... .+ .-+.|++||...|.+.+..+++|+
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~ 161 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGK 161 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCC
Confidence 44677799999999999999998863 38899999997543221 11 234699999999999999999887
Q ss_pred c-eeeeeeeccCCcccCcceeecCCCceEEEEehhhhhh-----cccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH
Q 006667 110 A-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 183 (636)
Q Consensus 110 ~-I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~-----eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE 183 (636)
+ |.+|+||+..+...+.....++..+|+|+||+++|.. .+.+.||++||||+|.+.-..|-+.|. ..-|.+..
T Consensus 162 ~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rf-l~~g~~a~ 240 (283)
T COG1072 162 PDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERF-LKFGLTAF 240 (283)
T ss_pred CccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHH-Hhcccchh
Confidence 6 9999999999998876666678889999999999982 477999999999999987544444444 45566666
Q ss_pred HHHHHHHhcCCcchhhhccCCcCCccEEEeC
Q 006667 184 EIIHQISETVYPMYKAFIEPDLQTAHIKIIN 214 (636)
Q Consensus 184 eVl~qyl~~VrP~~ekfIePtk~~ADIIIpN 214 (636)
.....|..+.-|+-+.-. -..+.+++.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~~a-~~~a~~~w~~in 270 (283)
T COG1072 241 EDPASYFHNYAPLSEREA-IESARAIWDNIN 270 (283)
T ss_pred hChhhHhhccCcchHHHH-HHhhhhcceeeh
Confidence 666677666666543322 223555555544
No 28
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.68 E-value=3.1e-16 Score=170.13 Aligned_cols=161 Identities=21% Similarity=0.246 Sum_probs=119.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCccc----ccCC--------CCCcccccHHHHHHHHHhh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI----IDGN--------FDDPRLTDYDTLLENIRGL 105 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~----~dgn--------fD~P~afD~dlL~~~L~~L 105 (636)
.||||+|++|||||||++.|...+. .+.+|++|+||..... ...+ -+.|..+|.+.+.+.|..+
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L~~L 292 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETLEAL 292 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHHHHH
Confidence 4788899999999999999988874 3789999999853211 0011 1457788988888887777
Q ss_pred ----hCCCceeeeeeeccCCc----ccCcc--eeecCCCceEEEEehhhhhhc--------------------------c
Q 006667 106 ----KEGKAVQVPIYDFKSSS----RIGYR--TLEVPSSRIVIIEGIYALSEK--------------------------L 149 (636)
Q Consensus 106 ----k~Gk~I~iPvYDf~t~~----R~~~e--ti~v~~~dVIIVEGiyaL~~e--------------------------L 149 (636)
++|+.+.+|+||+..|. |...+ +....+.+|||+||+++++.. +
T Consensus 293 ~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~~~w 372 (460)
T PLN03046 293 SKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYYDAW 372 (460)
T ss_pred HHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHHHHH
Confidence 67999999999999976 43211 223578899999999987621 1
Q ss_pred cCCccEEEEEeCCh-hhHHHHHHhhhhhhc-----CCCHHHHHHHHHhcCCcchhhhccC
Q 006667 150 RPLIDLRVSVTGGV-HFDLVKRVFRDIQRV-----GQEPEEIIHQISETVYPMYKAFIEP 203 (636)
Q Consensus 150 Rdl~DLKIFVDad~-D~RL~RRI~RDi~eR-----GrslEeVl~qyl~~VrP~~ekfIeP 203 (636)
..++|..|++.++. +..+.||++++.+.+ |.+.++| .+|.....|.|+.|.+.
T Consensus 373 ~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV-~~FV~~YmPaY~~y~~~ 431 (460)
T PLN03046 373 DKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEV-MDFVSRYLPAYKAYLPT 431 (460)
T ss_pred HHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHhhhHHHHHHHH
Confidence 12467777787664 778889999888665 6777774 56778889999988753
No 29
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.61 E-value=4.1e-16 Score=154.40 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=120.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccc----c--CCCCCcccccHHHHHHHHHhhhCCCcee--e
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII----D--GNFDDPRLTDYDTLLENIRGLKEGKAVQ--V 113 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~----d--gnfD~P~afD~dlL~~~L~~Lk~Gk~I~--i 113 (636)
-||||+|+|.|||||||+.|.+.|+++.+||+|+||++..+. + -+||.+++.|++++.+.+.....+.... .
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~a 84 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPEA 84 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccchH
Confidence 478999999999999999999999999999999999875431 1 2799999999999999887765542211 1
Q ss_pred ee--eecc--CCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHH
Q 006667 114 PI--YDFK--SSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 188 (636)
Q Consensus 114 Pv--YDf~--t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~q 188 (636)
+. .+.. .|-...+ ........++|+||.+++. +.+-+.+|.+|++.+|.+++-.||- .+.|+-+.+- -+
T Consensus 85 r~~~v~~~~~~~~~~~~-q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~----~Rt~y~p~~t-gy 158 (225)
T KOG3308|consen 85 REHLVSYANFEHYAQQF-QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRRE----ARTYYPPDDT-GY 158 (225)
T ss_pred hhhhhhhhHHHHHhhhc-CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhc----ccccCCCCCC-cc
Confidence 00 0000 0000000 2334567899999999987 7889999999999999999865554 3456555443 45
Q ss_pred HHhcCCcchhhhccCCcCCc--cEEEeCC
Q 006667 189 ISETVYPMYKAFIEPDLQTA--HIKIINK 215 (636)
Q Consensus 189 yl~~VrP~~ekfIePtk~~A--DIIIpN~ 215 (636)
+...+||.|.++.+-....+ |....|+
T Consensus 159 fd~~~~P~Y~~~~~~~~d~~~h~~~flng 187 (225)
T KOG3308|consen 159 FDPVVWPHYEKNFEEARDRSRHDSLFLNG 187 (225)
T ss_pred ccCccchHHHHHHHHHHhhcccceeeecc
Confidence 55669999998876544444 6766653
No 30
>PLN02796 D-glycerate 3-kinase
Probab=99.58 E-value=1.2e-14 Score=154.84 Aligned_cols=159 Identities=20% Similarity=0.270 Sum_probs=115.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCccc-ccCCC-----------CCcccccHHHHHHHHHhh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-IDGNF-----------DDPRLTDYDTLLENIRGL 105 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~-~dgnf-----------D~P~afD~dlL~~~L~~L 105 (636)
-+|+|+|++||||||+++.|...+. .+..|++|+||..... ...++ +.|.++|.+++.++|..|
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L 180 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETLEAL 180 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHH
Confidence 4788899999999999999999985 3688999998754211 11111 347789999999999999
Q ss_pred h----CCCceeeeeeeccCCcccCcc------eeecCCCceEEEEehhhhh-h-------------------------cc
Q 006667 106 K----EGKAVQVPIYDFKSSSRIGYR------TLEVPSSRIVIIEGIYALS-E-------------------------KL 149 (636)
Q Consensus 106 k----~Gk~I~iPvYDf~t~~R~~~e------ti~v~~~dVIIVEGiyaL~-~-------------------------eL 149 (636)
+ .|+.+.+|+||+..|.+.+++ +....+.+|||+||+++.. + .+
T Consensus 181 ~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~~~w 260 (347)
T PLN02796 181 RKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEAYYDAW 260 (347)
T ss_pred HhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHHHHHHH
Confidence 8 688999999999997633221 1223788999999999876 2 12
Q ss_pred cCCccEEEEEeCC-hhhHHHHHHhhhhh-----hcCCCHHHHHHHHHhcCCcchhhhc
Q 006667 150 RPLIDLRVSVTGG-VHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFI 201 (636)
Q Consensus 150 Rdl~DLKIFVDad-~D~RL~RRI~RDi~-----eRGrslEeVl~qyl~~VrP~~ekfI 201 (636)
..++|..|.+.++ .+.-..||++...+ ..|.+.++| .+|.....|.|+.|.
T Consensus 261 ~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v-~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 261 DKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEV-ADFVSRYMPAYKAYL 317 (347)
T ss_pred HHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHHHHHHH
Confidence 2357888888866 45556667665542 236777774 566677789888874
No 31
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.56 E-value=5e-15 Score=143.07 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=113.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC----cc-----cc----cCCCCCcccccHHHHHHHHHh----h
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----SR-----II----DGNFDDPRLTDYDTLLENIRG----L 105 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~----~r-----~~----dgnfD~P~afD~dlL~~~L~~----L 105 (636)
+|+|+|++||||||+|+.|++ + ++.+|++|.+... .. .. ...+.....+|...|.+.+.. +
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 78 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKR 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHH
Confidence 589999999999999999999 6 6999999997421 11 00 011223356777777665543 3
Q ss_pred hCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHH
Q 006667 106 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 185 (636)
Q Consensus 106 k~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeV 185 (636)
+.-+.+.+|.+......... ......++|+|+.+++...+.++||..|||++|.++++.|.+.|| |.+.+++
T Consensus 79 ~~l~~i~hp~i~~~~~~~~~----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~~~ 150 (179)
T cd02022 79 KKLEAITHPLIRKEIEEQLA----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 33456677775543322111 112246999999999988888999999999999999887777665 7899999
Q ss_pred HHHHHhcCCcchhhhccCCcCCccEEEeCCCCC
Q 006667 186 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 218 (636)
Q Consensus 186 l~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p 218 (636)
..++..+..+. +.+..||+||.|+.+.
T Consensus 151 ~~r~~~Q~~~~------~~~~~aD~vI~N~~~~ 177 (179)
T cd02022 151 EARIASQMPLE------EKRARADFVIDNSGSL 177 (179)
T ss_pred HHHHHhcCCHH------HHHHhCCEEEECcCCC
Confidence 99997764332 3468999999987543
No 32
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.43 E-value=3e-13 Score=133.30 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=107.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC----Ccc-c----c----cCCCCCcc-cccHHHHHHHHH----
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SSR-I----I----DGNFDDPR-LTDYDTLLENIR---- 103 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~----~~r-~----~----dgnfD~P~-afD~dlL~~~L~---- 103 (636)
++|+|+|++||||||+|+.|++.+ ++.+|++|.... ... . . ..-++... .+|-..|.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 479999999999999999999988 589999998632 111 0 0 01122233 466655554432
Q ss_pred hhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH
Q 006667 104 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 183 (636)
Q Consensus 104 ~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE 183 (636)
.++.-+.+.+|..-........ .....+++++|-.+++...+..+||.+|||++|.++|+.|.+.|+ |.+.+
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~----~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e 152 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELA----QLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEE 152 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH----hcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 1222233445532111111110 112346999999999988888999999999999999988877775 88999
Q ss_pred HHHHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 184 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 184 eVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
++..++..+ +|. ++.+..||+||.|+.
T Consensus 153 ~~~~ri~~Q-~~~-----~~k~~~aD~vI~N~g 179 (195)
T PRK14730 153 EAEARINAQ-WPL-----EEKVKLADVVLDNSG 179 (195)
T ss_pred HHHHHHHhC-CCH-----HHHHhhCCEEEECCC
Confidence 988888654 343 455789999998765
No 33
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.42 E-value=2.1e-12 Score=126.31 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=103.2
Q ss_pred ccceeeeEecCCCCCcccccceEEeeecCCeEEEEEeeeecCCCcccccceeEEEeee-----------------chhhh
Q 006667 252 TEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVR-----------------LLGGL 314 (636)
Q Consensus 252 ~e~~~DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v~-----------------~~~gL 314 (636)
...+.|+||..|+.+|+.++.+||+|..++++.+|||+|.. +.|.|+|+.+. +.+.|
T Consensus 26 ~~~q~n~Yfdtp~~~l~~~~~aLRiR~~~~~~~~TlK~~~~------~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~L 99 (180)
T cd07762 26 FFKQTNYYFDTPDFALKKKHSALRIREKEGKAELTLKVPQE------VGLLETNQPLTLEEAEKLIKGGTLPEGEILDKL 99 (180)
T ss_pred cEEEEEEEEeCCCHHHHhCCcEEEEEeeCCeEEEEEeeCCC------CCCcEEeecCCHHHHHHHhccccCCchHHHHHH
Confidence 34567999999999999999999999999999999999985 46889998885 33448
Q ss_pred hhcCCeE-----EEEEEeeeeeeeeCCEEEEeecccccCcceEEEe------cccHHHHHHHHHHcCCCCCc
Q 006667 315 MALGYTI-----ATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQ------GRDRLYVKYVGEQLGLDGSY 375 (636)
Q Consensus 315 ~~LGy~~-----aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIe------g~~r~~v~~~~~~Lgl~G~~ 375 (636)
.++||.. .+.+.+.|..|..++.++|||++++||.+++||| ...++.+.+++++|||.-.+
T Consensus 100 ~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~ 171 (180)
T cd07762 100 KELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP 171 (180)
T ss_pred HHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 9999985 9999999999999999999999999997559998 34688899999999998644
No 34
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.41 E-value=4.5e-13 Score=135.52 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=133.0
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhCC-----------C-cEEEEcccccCCccc---------ccCCCCCcccccH
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFMP-----------S-IAVITMDNYNDSSRI---------IDGNFDDPRLTDY 95 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L~-----------~-v~VIsmDdY~~~~r~---------~dgnfD~P~afD~ 95 (636)
.+-.+.++|++|++|+||||++..+....| . +.++.||.||..-+. .+-.-..|-.||-
T Consensus 115 ~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~ 194 (323)
T KOG2702|consen 115 TSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDS 194 (323)
T ss_pred cccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCH
Confidence 355678999999999999999999999754 1 246999999753211 1112235778999
Q ss_pred HHHHHHHHhhh--CCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhh-----cccCCccEEEEEeCChhhHHH
Q 006667 96 DTLLENIRGLK--EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLV 168 (636)
Q Consensus 96 dlL~~~L~~Lk--~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~-----eLRdl~DLKIFVDad~D~RL~ 168 (636)
+++.+.++.|+ .-..+..|.||+..+.++.+..-.....+|||+||.|++++ .+.+++|.|+|+|.+.+....
T Consensus 195 ~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~ 274 (323)
T KOG2702|consen 195 NLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE 274 (323)
T ss_pred HHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence 99999998888 45689999999999988764433345578999999999972 577889999999999998766
Q ss_pred HHHhhhhhhcC--CCHHHHHHHHHhcCCcchhhhccCCcCCccEEE
Q 006667 169 KRVFRDIQRVG--QEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 212 (636)
Q Consensus 169 RRI~RDi~eRG--rslEeVl~qyl~~VrP~~ekfIePtk~~ADIII 212 (636)
|--.| +...| .++++...++....+|+ -.+|+..+-.+|+||
T Consensus 275 RVa~R-Hl~sGl~~t~~ea~er~d~ND~~N-~~~I~k~~i~~D~iv 318 (323)
T KOG2702|consen 275 RVAKR-HLQSGLVTTIAEARERFDSNDLLN-GRDIDKHLIKVDNIV 318 (323)
T ss_pred HHHHH-hhcccccCCHHHHHhhcccccccc-hHHHHhcccchHHHH
Confidence 55444 45667 78888888887777776 356777777777776
No 35
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.38 E-value=3.3e-12 Score=122.75 Aligned_cols=134 Identities=23% Similarity=0.353 Sum_probs=105.1
Q ss_pred cccccceeeeEecCCCCCcccccceEEeeec-CCeEEEEEeeeecCCC-----cccccceeEEEeee----chhhhhhcC
Q 006667 249 TETTEETYDIYLLPPGEDPDACQSYLRMRNR-DGKYNLMFEEWVTDSP-----FIISPRITFEVSVR----LLGGLMALG 318 (636)
Q Consensus 249 ~~~~e~~~DIYLlpPt~df~~tdeaLRiR~~-dg~~~Ltykgp~~d~~-----fiikPR~efev~v~----~~~gL~~LG 318 (636)
......+.|+||-.|..++...+.|||+|.. ++...+|||+|..+.+ +.+. |.|++..+. ....|..+|
T Consensus 29 ~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~~~~e~~~~~~-r~e~e~~i~~~~~~~~~l~~l~ 107 (185)
T PF01928_consen 29 FPKEEHQTDTYFDTPDRDLRKAGIALRIRRENGDGWYLTLKGPGSDGPREEIEFEVS-REEYEAPISDAEEMREILEALG 107 (185)
T ss_dssp EEEEEEEEEEEEEETTTHHHHTTSEEEEEEETTTEEEEEEEEESSSSSEEEEEEEES-HHCCEEEHSHHHHHHHHHHHTT
T ss_pred cCeEEEEEEEEEeCCChhHHhCCcEEEEEeecCCccEEEEEccCccCcccccceeec-chhhhccccchHHHHHHHHHhc
Confidence 3445567799999999999999999999965 6666699999998886 1111 333333332 345689999
Q ss_pred CeEEEEEEeeeeeeeeCCEEEEeeccccc-CcceEEEecc--cHHHHHH-------HHHHcCCCC-CcccchhHHHH
Q 006667 319 YTIATILKRSSHIFYDDRVCVKTDWLEQL-NRKYVQVQGR--DRLYVKY-------VGEQLGLDG-SYVPRTYIEQI 384 (636)
Q Consensus 319 y~~aa~V~R~re~y~~~~~~i~lD~ve~L-g~~FveIeg~--~r~~v~~-------~~~~Lgl~G-~~i~kSYLEli 384 (636)
|.+.+.+.+.|..|..+++.|++|+++++ | +|+|||.. +...+.+ +...||+.. +.++++|++|+
T Consensus 108 l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~-~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 108 LRPVARIEKKRRSYRLEGVEVELDEVDGLPG-TFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEETTTTE-EEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred CceeEEEEEEEEEEEECCEEEEEEEEecceE-EEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 99999999999999999999999999999 7 59999933 3444444 444599987 66999999886
No 36
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.37 E-value=5.2e-13 Score=132.09 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=109.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CC-cc----ccc--C--CCCCcccccHHHHHHHHH----hh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DS-SR----IID--G--NFDDPRLTDYDTLLENIR----GL 105 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~-~r----~~d--g--nfD~P~afD~dlL~~~L~----~L 105 (636)
+|+|+|++||||||+++.|++ + ++.+|+.|... .+ +. ... | -++....+|-..|.+.+. .+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~-g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~ 78 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-L-GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKL 78 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-C-CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHH
Confidence 589999999999999999986 5 58999999862 11 11 000 1 223335667666665542 22
Q ss_pred hCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHH
Q 006667 106 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 185 (636)
Q Consensus 106 k~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeV 185 (636)
+.-+.+.+|........... .....+++|+|..+++...+.++||..|||++|.++++.|.+.| +|.+.+++
T Consensus 79 ~~L~~i~hP~v~~~~~~~~~----~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e~a 150 (196)
T PRK14732 79 KALNELIHPLVRKDFQKILQ----TTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISR----DGMKKEDV 150 (196)
T ss_pred HHHHHHhhHHHHHHHHHHHH----HHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHH
Confidence 22344556653322111110 01224689999999998778889999999999999988877766 48899999
Q ss_pred HHHHHhcCCcchhhhccCCcCCccEEEeCCCCC
Q 006667 186 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 218 (636)
Q Consensus 186 l~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p 218 (636)
..++..+. | +++.+..||+||.|+.+.
T Consensus 151 ~~ri~~Q~-~-----~~~k~~~aD~vI~N~~~~ 177 (196)
T PRK14732 151 LARIASQL-P-----ITEKLKRADYIVRNDGNR 177 (196)
T ss_pred HHHHHHcC-C-----HHHHHHhCCEEEECCCCH
Confidence 98887653 3 345678999999886533
No 37
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.37 E-value=5.3e-13 Score=130.68 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=100.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc----cCCcc-----cc----cCCCCCcccccHHHHHHHHH----hh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY----NDSSR-----II----DGNFDDPRLTDYDTLLENIR----GL 105 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY----~~~~r-----~~----dgnfD~P~afD~dlL~~~L~----~L 105 (636)
+|||+|+.||||||+++.|++ + ++.+|++|.. +.+.. .. ..-++.-..+|...|.+.+. .+
T Consensus 2 iIglTG~igsGKStv~~~l~~-~-G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-L-GFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-T-T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-C-CCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 789999999999999999999 5 6999999985 22211 00 01122234566666665442 12
Q ss_pred hCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHH
Q 006667 106 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 185 (636)
Q Consensus 106 k~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeV 185 (636)
+.-+.+.+|........+. ......+++++|..+++...+...||..|+|++|.++++.|-+.|| |.+.+++
T Consensus 80 ~~L~~iihP~I~~~~~~~~----~~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~~ 151 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFI----KRNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEEA 151 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH----HhccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHHH
Confidence 2223455665332222111 0112238999999999988889999999999999999877666664 9999998
Q ss_pred HHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 186 IHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 186 l~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
..+...+ .|..++ ++.||+||.|+.
T Consensus 152 ~~ri~~Q-~~~~~k-----~~~ad~vI~N~g 176 (180)
T PF01121_consen 152 EARIASQ-MPDEEK-----RKRADFVIDNNG 176 (180)
T ss_dssp HHHHHTS---HHHH-----HHH-SEEEE-SS
T ss_pred HHHHHhC-CCHHHH-----HHhCCEEEECCC
Confidence 8877655 555443 478999999864
No 38
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.37 E-value=1.7e-12 Score=145.06 Aligned_cols=171 Identities=19% Similarity=0.153 Sum_probs=120.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCc----ccccCCCCCcccccHHHHHHHHHhhh-----CCCc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLK-----EGKA 110 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~----r~~dgnfD~P~afD~dlL~~~L~~Lk-----~Gk~ 110 (636)
+..+|+|+|||||||||+|+.|++.| +..+++.|+||+.- .....+++++.++ ..+.+++.... .+..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l-~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~ 359 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL-GLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSDLKIELKPSSGSPQR 359 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-CCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhcCCeeeccCCCCCce
Confidence 56799999999999999999999999 58999999988642 1122456655543 44555554333 2356
Q ss_pred eeeeeeeccCCcccCcce--------------------eecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHH
Q 006667 111 VQVPIYDFKSSSRIGYRT--------------------LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR 170 (636)
Q Consensus 111 I~iPvYDf~t~~R~~~et--------------------i~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RR 170 (636)
+.+|.||+..+-|...-. .......-+|+||-.+.. .+.+-.|+|||++++.++|..||
T Consensus 360 i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt-vV~P~AdlKIfL~As~evRa~RR 438 (512)
T PRK13477 360 VWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT-HVFPDAELKIFLTASVEERARRR 438 (512)
T ss_pred EEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee-EEcCCCCEEEEEECCHHHHHHHH
Confidence 889999988776543100 001122358999998775 34566899999999999988877
Q ss_pred HhhhhhhcCC---CHHHHHHHHHhcCCcchhhhccCCcCC-ccEEEeCC
Q 006667 171 VFRDIQRVGQ---EPEEIIHQISETVYPMYKAFIEPDLQT-AHIKIINK 215 (636)
Q Consensus 171 I~RDi~eRGr---slEeVl~qyl~~VrP~~ekfIePtk~~-ADIIIpN~ 215 (636)
..+. ..||. +.+++.+.+.++..-...+.+.|.... ++++|..+
T Consensus 439 ~~~l-~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs 486 (512)
T PRK13477 439 ALDL-QAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITD 486 (512)
T ss_pred Hhhh-hhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECC
Confidence 6553 45664 478888888888766777888887766 56777543
No 39
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.37 E-value=1.2e-12 Score=128.46 Aligned_cols=159 Identities=21% Similarity=0.178 Sum_probs=105.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC----Ccc-----cc----cCCCCCcccccHHHHHHHHH----h
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SSR-----II----DGNFDDPRLTDYDTLLENIR----G 104 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~----~~r-----~~----dgnfD~P~afD~dlL~~~L~----~ 104 (636)
.+|+|+|++||||||+++.|++ + ++.+|++|.+.+ ... .. ...|+....+|-..|.+.+. .
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L-GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 4799999999999999999998 7 599999998632 111 00 01233234567666655442 2
Q ss_pred hhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH
Q 006667 105 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 184 (636)
Q Consensus 105 Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe 184 (636)
++.-+.+.+|..-........ ......++|+|+.+++...+.+.||..|+|++|.++++.|-..| +|.+.++
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~----~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~e~ 152 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQ----EAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMAR----DGLSEEE 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHc----CCCCHHH
Confidence 222234455543222111110 01223799999999998888899999999999999976655544 5788888
Q ss_pred HHHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 185 IIHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 185 Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
+..++..+ .|.. .....||++|.|+.
T Consensus 153 ~~~ri~~Q-~~~~-----~~~~~ad~vI~N~g 178 (194)
T PRK00081 153 AEAIIASQ-MPRE-----EKLARADDVIDNNG 178 (194)
T ss_pred HHHHHHHh-CCHH-----HHHHhCCEEEECCC
Confidence 87777654 4432 23578999998764
No 40
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.36 E-value=2.1e-12 Score=127.89 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=108.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CCcc-----cc----cCCCCCcccccHHHHHHHHH----h
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSR-----II----DGNFDDPRLTDYDTLLENIR----G 104 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~~r-----~~----dgnfD~P~afD~dlL~~~L~----~ 104 (636)
.+|+|+|++||||||+++.|++ + ++.+|+.|... .+.. .. ...++....+|-..|.+.+. .
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~-g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E-GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 4799999999999999999998 5 69999999742 2111 00 11233345667666665442 2
Q ss_pred hhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH
Q 006667 105 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 184 (636)
Q Consensus 105 Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe 184 (636)
++.-+.+.+|........... ........++++|..+++...+.+.+|.+|||++|.++++.|...| +|.+.++
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~--~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R----~g~s~e~ 153 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFN--EARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEK----RGLDEDD 153 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHH--HHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHc----CCCCHHH
Confidence 222234556653211111100 0011234789999999988888889999999999999976554444 6899999
Q ss_pred HHHHHHhcCCcchhhhccCCcCCccEEEeCCCCC
Q 006667 185 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 218 (636)
Q Consensus 185 Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p 218 (636)
+..++..++.+.+. +..||++|.|+.++
T Consensus 154 ~~~ri~~Q~~~~~k------~~~ad~vI~N~g~~ 181 (200)
T PRK14734 154 ARRRIAAQIPDDVR------LKAADIVVDNNGTR 181 (200)
T ss_pred HHHHHHhcCCHHHH------HHhCCEEEECcCCH
Confidence 99998777555432 47999999876543
No 41
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.36 E-value=3.1e-12 Score=116.85 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=96.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCCc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 122 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~ 122 (636)
+|+|+|++||||||+|+.|++.+ ++.+++.|............+ ..+...+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~~i~~e~~~~~~~~----~~~~~~i~~~l~~~~~--------------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTGGIRTEEVGKLASE----VAAIPEVRKALDERQR--------------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCceeccccCCHHHHHHHHHH----hcccHhHHHHHHHHHH---------------
Confidence 58999999999999999999999 588999985432110000000 0001111121211100
Q ss_pred ccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhh-cCCCHHHHHHHHHhcCCcchhhhc
Q 006667 123 RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFI 201 (636)
Q Consensus 123 R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~e-RGrslEeVl~qyl~~VrP~~ekfI 201 (636)
.+...+-+|+||.++.+ .+.+.+|+.|||++|.+++..|+..|+... +|.+++++.+++.....+.+..|+
T Consensus 61 -------~~~~~~~~Vidg~~~~~-~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 61 -------ELAKKPGIVLEGRDIGT-VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred -------HHhhCCCEEEEeeeeee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 01122457889988754 235678999999999999988888887442 378999999999999999999999
Q ss_pred cCCc-CCccEEEe
Q 006667 202 EPDL-QTAHIKII 213 (636)
Q Consensus 202 ePtk-~~ADIIIp 213 (636)
.|+. ..-|++|.
T Consensus 133 ~~~~~~~~dl~i~ 145 (147)
T cd02020 133 APLKLAEDAIVID 145 (147)
T ss_pred ccccCCCCcEEEe
Confidence 9986 44457764
No 42
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.33 E-value=1.6e-12 Score=141.04 Aligned_cols=256 Identities=17% Similarity=0.194 Sum_probs=145.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CCcc-----ccc--C--CCCCcccccHHHHHHHHH----h
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSR-----IID--G--NFDDPRLTDYDTLLENIR----G 104 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~~r-----~~d--g--nfD~P~afD~dlL~~~L~----~ 104 (636)
..|+|+|+.||||||+|+.|++ + ++.+|++|... .... ..+ | .++....+|-..|.+.+. .
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~-G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L-GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 4699999999999999999998 6 69999999862 1111 100 1 222335677777766543 2
Q ss_pred hhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH
Q 006667 105 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 183 (636)
Q Consensus 105 Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE 183 (636)
++.-+.+.+|..-.... +.+...+...++++++.+|+ ..+.+.||.+|||++|.++++.| ...+||.+.+
T Consensus 80 ~~~le~i~hP~I~~~i~-----~~i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~R----l~~rRg~s~~ 150 (395)
T PRK03333 80 RAVLNGIVHPLVGARRA-----ELIAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRR----LVEQRGMAEA 150 (395)
T ss_pred HHHHHHhhhHHHHHHHH-----HHHHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHH----HHhcCCCCHH
Confidence 22223444554221111 11112233344555555554 67889999999999999997544 3345799999
Q ss_pred HHHHHHHhcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcccccccccceeeeEecCC
Q 006667 184 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPP 263 (636)
Q Consensus 184 eVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~~~~~~~e~~~DIYLlpP 263 (636)
++..++..+... ++.+..||++|.|+.++. . +.+....++......++.....-....+..|-+.|.
T Consensus 151 ~a~~ri~~Q~~~------e~k~~~AD~vIdN~~s~e-----~--l~~~v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~y 217 (395)
T PRK03333 151 DARARIAAQASD------EQRRAVADVWLDNSGTPD-----E--LVEAVRALWADRLLPFAHNLRARRRAARAPPRLVPA 217 (395)
T ss_pred HHHHHHHhcCCh------HHHHHhCCEEEECCCCHH-----H--HHHHHHHHHHHHHhhHHHHHhcCCCCCCCCceEeCC
Confidence 988888766332 334789999998765432 0 000001111122222222222233344456778887
Q ss_pred CCCcccc--cceEEeeecCCeEEEEEee----eecCCCcccccceeEEEeeech-------hhhhhcCCeEEE
Q 006667 264 GEDPDAC--QSYLRMRNRDGKYNLMFEE----WVTDSPFIISPRITFEVSVRLL-------GGLMALGYTIAT 323 (636)
Q Consensus 264 t~df~~t--deaLRiR~~dg~~~Ltykg----p~~d~~fiikPR~efev~v~~~-------~gL~~LGy~~aa 323 (636)
.+.-... .+.-+++..=+...+.+++ .+-+. .-||-+++-|+|... ..|.++||....
T Consensus 218 dp~W~~~f~~e~~~l~~~l~~~~~~IeHIGSTsVpGl--~AKPiIDI~v~V~~~~~~~~~~~~l~~~Gy~~~~ 288 (395)
T PRK03333 218 DPSWPAQAQRIVARLKTAAGHKALRVDHIGSTAVPGL--DAKDVIDIQVTVESLAVADELAEPLAAAGFPRLP 288 (395)
T ss_pred CCCcHHHHHHHHHHHHHhcCccceEEEEeccCCCCCC--ccCCeeeEEEeeCChHHHHHHHHHHHHCCCcccc
Confidence 7764322 2222222222333333432 22222 339999999999433 358999998653
No 43
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.29 E-value=2.2e-11 Score=120.72 Aligned_cols=120 Identities=13% Similarity=0.044 Sum_probs=99.1
Q ss_pred cccceeeeEecCCCCCcccccceEEeeecCCeEEEEEeeeec---CCCcccccceeEEEeeec-----------------
Q 006667 251 TTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVT---DSPFIISPRITFEVSVRL----------------- 310 (636)
Q Consensus 251 ~~e~~~DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~---d~~fiikPR~efev~v~~----------------- 310 (636)
....+.|+||-.|+++++.++.|||+|+. ..+|+|+++.. +... +-+.|++..+..
T Consensus 28 ~~~~~~d~YfDtp~~~l~~~~~~LRiR~~--~~~lk~~~~~~~~~~~~~--~~~~E~~~~~~~~~~v~~~~~~~~~~~~~ 103 (196)
T cd07758 28 GRRTFHDTYYDTPDNTLSLNDVWLRQRNG--QWELKIPPGGDPPTAGAN--TRYEELTGEAAIAAALRKLLGGALPSAGG 103 (196)
T ss_pred ceEEEeeEEEeCCChhHHhCCcEEEEECC--eEEEEecCCCCCCCCCCc--ceEEecccHHHHHHHHHHhcCCCCCcchh
Confidence 34456699999999999999999999964 77888887765 2333 778888777621
Q ss_pred -hhhhhhcCCeEEEEEEeeeeeeeeC-CEEEEeecccccCcceEEEec------------ccHHHHHHHHHHcCCCCCc
Q 006667 311 -LGGLMALGYTIATILKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQG------------RDRLYVKYVGEQLGLDGSY 375 (636)
Q Consensus 311 -~~gL~~LGy~~aa~V~R~re~y~~~-~~~i~lD~ve~Lg~~FveIeg------------~~r~~v~~~~~~Lgl~G~~ 375 (636)
.+.|..+||.+.+.+.|.|..|..+ +++|+||+++ +|..|+|||- ..++.+.+++++||+.+.|
T Consensus 104 ~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg~~~~~ 181 (196)
T cd07758 104 LGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKIDELISALMERYLW 181 (196)
T ss_pred HHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHHHHHHHHhCCCccc
Confidence 2578999999999999999999999 9999999999 7755999992 3677899999999999844
No 44
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.29 E-value=9.1e-12 Score=127.58 Aligned_cols=166 Identities=17% Similarity=0.076 Sum_probs=107.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CCcc-----ccc--C--CCCCcccccHHHHHHHHH----h
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSR-----IID--G--NFDDPRLTDYDTLLENIR----G 104 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~~r-----~~d--g--nfD~P~afD~dlL~~~L~----~ 104 (636)
.+|||+|+.||||||+++.|++.+ ++.+|++|... .+.. ..+ + -++....+|-..|.+.+. .
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~-G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH-HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 479999999999999999999877 59999999852 2211 000 1 122235677777766542 2
Q ss_pred hhCCCceeeeeeeccCCcccC---c----ceeecCCCceEEEEehhhhhhcc-cCCccEEEEEeCChhhHHHHHHhhhhh
Q 006667 105 LKEGKAVQVPIYDFKSSSRIG---Y----RTLEVPSSRIVIIEGIYALSEKL-RPLIDLRVSVTGGVHFDLVKRVFRDIQ 176 (636)
Q Consensus 105 Lk~Gk~I~iPvYDf~t~~R~~---~----eti~v~~~dVIIVEGiyaL~~eL-Rdl~DLKIFVDad~D~RL~RRI~RDi~ 176 (636)
++.-+.+.+|..-........ + .........++|+|..+++...+ ...||..|+|++|.++++.|-+.|
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R--- 157 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKR--- 157 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHc---
Confidence 233344556642211100000 0 00011223599999999998664 468899999999999976664444
Q ss_pred hcCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEeCC--CCC
Q 006667 177 RVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK--FNP 218 (636)
Q Consensus 177 eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~--f~p 218 (636)
+|.+.+++.+++..+..+. -.+..||+||.|+ .+.
T Consensus 158 -~g~s~eea~~Ri~~Q~~~~------ek~~~aD~VI~N~~~g~~ 194 (244)
T PTZ00451 158 -NGFSKEEALQRIGSQMPLE------EKRRLADYIIENDSADDL 194 (244)
T ss_pred -CCCCHHHHHHHHHhCCCHH------HHHHhCCEEEECCCCCCH
Confidence 5889999999987754332 2468999999987 544
No 45
>PRK06217 hypothetical protein; Validated
Probab=99.28 E-value=3.1e-11 Score=116.86 Aligned_cols=107 Identities=23% Similarity=0.267 Sum_probs=73.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCCc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 122 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~ 122 (636)
.|+|.|++||||||+|++|++.+ ++.++++|+++..+... .|......+ +.+...+..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~---------------- 62 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-DIPHLDTDDYFWLPTDP--PFTTKRPPE-ERLRLLLEDLR---------------- 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCceeeccCCC--CccccCCHH-HHHHHHHHHHh----------------
Confidence 58999999999999999999999 58999999987543211 111111111 11111111111
Q ss_pred ccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcC
Q 006667 123 RIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG 179 (636)
Q Consensus 123 R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRG 179 (636)
..+-+|+||.|..+ ..+...+|..|||++|.++++.|...|.....|
T Consensus 63 ----------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~ 110 (183)
T PRK06217 63 ----------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQRYG 110 (183)
T ss_pred ----------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccccC
Confidence 11357889999876 556788999999999999999988888765433
No 46
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.27 E-value=1.8e-11 Score=122.37 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=107.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CCccc----cc--C--CCCCcccccHHHHHHHHH----hh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSRI----ID--G--NFDDPRLTDYDTLLENIR----GL 105 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~~r~----~d--g--nfD~P~afD~dlL~~~L~----~L 105 (636)
.+|||+|+.||||||+++.|++.+ ++.+++.|.+. ..+.. .. | -++ ...+|-..|.+.+. .+
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~l-g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKL-NLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKEAK 84 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHc-CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHHHH
Confidence 489999999999999999999888 58899999862 21110 00 1 122 34677777766553 23
Q ss_pred hCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcc--cCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH
Q 006667 106 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL--RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 183 (636)
Q Consensus 106 k~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eL--Rdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE 183 (636)
+.-+.+.||......... +......++++|..+++...+ .+.||..|+|++|.++++.|-+.| +|.+.+
T Consensus 85 ~~Le~i~HP~V~~~~~~~-----~~~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~R----d~~s~~ 155 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQ-----VKESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMER----DGKNRQ 155 (204)
T ss_pred HHHHhhhhHHHHHHHHHH-----HHhcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHc----CCCCHH
Confidence 333456666643322111 111234689999999987544 468999999999999976655544 588999
Q ss_pred HHHHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 184 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 184 eVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
++..++..+ .|..+ .++.||+||.|+.
T Consensus 156 ~a~~ri~~Q-~~~ee-----k~~~aD~VI~N~g 182 (204)
T PRK14733 156 QAVAFINLQ-ISDKE-----REKIADFVIDNTE 182 (204)
T ss_pred HHHHHHHhC-CCHHH-----HHHhCCEEEECcC
Confidence 988888665 44432 3589999999865
No 47
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.27 E-value=3.8e-12 Score=113.54 Aligned_cols=116 Identities=22% Similarity=0.353 Sum_probs=76.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcc--cccHHHHHHHHHhhhCCCceeeeeeeccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPR--LTDYDTLLENIRGLKEGKAVQVPIYDFKS 120 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~--afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t 120 (636)
+|+|+|++||||||+|+.|++.+ ++.++++|++...........+.+. ..+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE-------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc-------------
Confidence 68999999999999999999999 5999999995322211111111111 1223334444433321
Q ss_pred CcccCcceeecCCCceEEEEehhhhhhcc-cCCccEEEEEeCChhhHHHHHHhhhhhhcCCCH
Q 006667 121 SSRIGYRTLEVPSSRIVIIEGIYALSEKL-RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 182 (636)
Q Consensus 121 ~~R~~~eti~v~~~dVIIVEGiyaL~~eL-Rdl~DLKIFVDad~D~RL~RRI~RDi~eRGrsl 182 (636)
......+|+||.+.....+ ....|..||++++.+.++.+++.|...++|++.
T Consensus 67 ----------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~ 119 (121)
T PF13207_consen 67 ----------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR 119 (121)
T ss_dssp ----------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred ----------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence 2345789999976622222 235578999999999889999999999988864
No 48
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.26 E-value=8.1e-12 Score=121.23 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=105.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CCcc-----cc-c-C--CCCCcccccHHHHHHHHH----hh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSR-----II-D-G--NFDDPRLTDYDTLLENIR----GL 105 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~~r-----~~-d-g--nfD~P~afD~dlL~~~L~----~L 105 (636)
+|+|+|++||||||+|+.|++.. ++.+|++|.+. .... .. . + -++....+|-..|.+.+. .+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHH
Confidence 48999999999999999999975 58999999862 1111 00 0 0 122233455555544331 11
Q ss_pred hCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHH
Q 006667 106 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 185 (636)
Q Consensus 106 k~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeV 185 (636)
..-+.+.+|..-........ .. .....+||++..+++...+.+.+|..|||++|.++++.|.+.|+ |.+.+++
T Consensus 80 ~~le~ilhP~i~~~i~~~i~--~~-~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLA--QF-QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHH--Hh-hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 11224455553222111110 00 11225888898888777788999999999999999988888776 8899998
Q ss_pred HHHHHhcCCcchhhhccCCcCCccEEEeCCCCC
Q 006667 186 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 218 (636)
Q Consensus 186 l~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p 218 (636)
..++..+ .|.+ +.+..||++|.|+..+
T Consensus 153 ~~r~~~q-~~~~-----~~~~~ad~vI~N~~~~ 179 (188)
T TIGR00152 153 QKRLASQ-MDIE-----ERLARADDVIDNSATL 179 (188)
T ss_pred HHHHHhc-CCHH-----HHHHhCCEEEECCCCH
Confidence 8888766 3432 3467899999887543
No 49
>PLN02422 dephospho-CoA kinase
Probab=99.24 E-value=1.7e-11 Score=124.81 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=108.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC----Ccc-----cc----cCCCCCcccccHHHHHHHHH----h
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SSR-----II----DGNFDDPRLTDYDTLLENIR----G 104 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~----~~r-----~~----dgnfD~P~afD~dlL~~~L~----~ 104 (636)
++|+|+|++||||||+++.|++ + ++.+|+.|.... +.. .. ..-++....+|-..|.+.+. .
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~-g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-S-GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 4799999999999999999995 5 699999998621 111 00 01233345677776666542 2
Q ss_pred hhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH
Q 006667 105 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 184 (636)
Q Consensus 105 Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe 184 (636)
++.-+.+.||..-.....+.. .......+++++|-.+++...+.+.||..|||++|.++++.|-+.|+ |.+.++
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~--~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s~ee 153 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEIL--KLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD----GLSEEQ 153 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHH--HHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 333345666663221111100 00112347999999999987888899999999999999776655554 889888
Q ss_pred HHHHHHhcCCcchhhhccCCcCCccEEEeCCCC
Q 006667 185 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 217 (636)
Q Consensus 185 Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~ 217 (636)
+..+...+ .|..+ .+..||++|.|+.+
T Consensus 154 a~~Ri~~Q-~~~ee-----k~~~AD~VI~N~gs 180 (232)
T PLN02422 154 ARNRINAQ-MPLDW-----KRSKADIVIDNSGS 180 (232)
T ss_pred HHHHHHHc-CChhH-----HHhhCCEEEECCCC
Confidence 88777444 44422 26889999987753
No 50
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=3.7e-11 Score=119.40 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=99.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CC-cc----cc-----cC-CCCCcc--cccHHHHHHHHH-
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DS-SR----II-----DG-NFDDPR--LTDYDTLLENIR- 103 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~-~r----~~-----dg-nfD~P~--afD~dlL~~~L~- 103 (636)
.+|+|+|++||||||+++.|.+ + ++.+++.|... .. .. .. +. +.+... .+|-..|.+.+.
T Consensus 6 ~~igitG~igsGKSt~~~~l~~-~-g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~ 83 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE-M-GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFS 83 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-C-CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhC
Confidence 4789999999999999999998 5 69999999641 11 10 00 00 111111 255444433221
Q ss_pred ---hhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCC
Q 006667 104 ---GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 180 (636)
Q Consensus 104 ---~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGr 180 (636)
.++.-+.+.+|.....-.... ........+++++|+.+++...+...||..|+|++|.++++.|.+.|+ +.
T Consensus 84 ~~~~~~~l~~i~hp~i~~~~~~~i--~~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~----~~ 157 (208)
T PRK14731 84 DPEKLGALNRLIHPKVFAAFQRAV--DRAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRG----MG 157 (208)
T ss_pred CHHHHHHHHHHHCHHHHHHHHHHH--HHHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcC----CC
Confidence 122223344554221111110 001113347999999988877777889999999999999877766664 45
Q ss_pred CHHHHHHHHHhcCCcchhhhccCCcCCccEEEeCCCC
Q 006667 181 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 217 (636)
Q Consensus 181 slEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~ 217 (636)
+.+++..++..+ ++.. .++ +.||++|.|+.+
T Consensus 158 s~e~~~~Ri~~q-~~~~-~~~----~~ad~vI~N~g~ 188 (208)
T PRK14731 158 SREEIRRRIAAQ-WPQE-KLI----ERADYVIYNNGT 188 (208)
T ss_pred CHHHHHHHHHHc-CChH-HHH----HhCCEEEECCCC
Confidence 778887777554 4443 223 579999987653
No 51
>PRK07261 topology modulation protein; Provisional
Probab=99.18 E-value=3.8e-11 Score=115.89 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=88.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCCc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 122 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~ 122 (636)
-|+|.|++||||||||+.|++.+ ++.++++|.++..+. |. ..+.+.+...+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~~-----~~---~~~~~~~~~~~~~~~---------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQPN-----WQ---ERDDDDMIADISNFL---------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEeccc-----cc---cCCHHHHHHHHHHHH----------------
Confidence 48899999999999999999998 588999998654221 21 112333433333221
Q ss_pred ccCcceeecCCCceEEEEehhhh-h-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhh
Q 006667 123 RIGYRTLEVPSSRIVIIEGIYAL-S-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAF 200 (636)
Q Consensus 123 R~~~eti~v~~~dVIIVEGiyaL-~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekf 200 (636)
.... +|+||.|.- . +...+.+|..||+|.|...|+.|.+.|.+..+|++.+++..++.+.....|-+|
T Consensus 57 ---------~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~g~~e~~~~~~l~~ 126 (171)
T PRK07261 57 ---------LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAENCPEKFDWEFIKW 126 (171)
T ss_pred ---------hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccCCCcccCCHHHHHH
Confidence 1123 899999985 2 444458999999999999999999999998889887766555555444455666
Q ss_pred c
Q 006667 201 I 201 (636)
Q Consensus 201 I 201 (636)
+
T Consensus 127 i 127 (171)
T PRK07261 127 I 127 (171)
T ss_pred H
Confidence 5
No 52
>PRK08118 topology modulation protein; Reviewed
Probab=99.18 E-value=9.8e-11 Score=112.84 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=73.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCCc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 122 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~ 122 (636)
-|.|.|++||||||+|+.|++.+ ++.++++|..+..+. |.. .+-+...+.+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~~-----w~~---~~~~~~~~~~~~~~---------------- 57 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKPN-----WEG---VPKEEQITVQNELV---------------- 57 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhcccC-----CcC---CCHHHHHHHHHHHh----------------
Confidence 58999999999999999999999 589999998654321 111 11111222222211
Q ss_pred ccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCH
Q 006667 123 RIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 182 (636)
Q Consensus 123 R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrsl 182 (636)
..+-+|+||.|.-. +...+.+|..||||+|.++|+.|.+.|....+|.+.
T Consensus 58 ----------~~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~ 108 (167)
T PRK08118 58 ----------KEDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTR 108 (167)
T ss_pred ----------cCCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCC
Confidence 11247889998843 433467999999999999999999999887677644
No 53
>PRK06762 hypothetical protein; Provisional
Probab=99.11 E-value=8.7e-10 Score=104.29 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=77.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeecc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 119 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~ 119 (636)
+++|.|+|++||||||+|+.|++.++ ++.+++.|.++..- .+.++.|..+..+.+.+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l---~~~~~~~~~~~~~~~~~~~~~~-------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM---LRVKDGPGNLSIDLIEQLVRYG-------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh---ccccCCCCCcCHHHHHHHHHHH--------------
Confidence 36899999999999999999999985 57788988875321 1233455566666544433221
Q ss_pred CCcccCcceeecCCCceEEEEehhhhh------hcccCCc---cEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHH
Q 006667 120 SSSRIGYRTLEVPSSRIVIIEGIYALS------EKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 190 (636)
Q Consensus 120 t~~R~~~eti~v~~~dVIIVEGiyaL~------~eLRdl~---DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl 190 (636)
.....++|++|++.-. ..+.... ...||+++|.++|+.|...|.. ..+.+.+.+-.+|.
T Consensus 65 -----------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~~~~~ 132 (166)
T PRK06762 65 -----------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGEDDMRRWWN 132 (166)
T ss_pred -----------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCHHHHHHHHh
Confidence 1123567778875321 2233333 3789999999999888877763 23444444444443
No 54
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.98 E-value=7.7e-10 Score=110.50 Aligned_cols=162 Identities=17% Similarity=0.144 Sum_probs=100.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC----Cc-----ccc--cC-CCC-CcccccHHHHHHHH----H
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS-----RII--DG-NFD-DPRLTDYDTLLENI----R 103 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~----~~-----r~~--dg-nfD-~P~afD~dlL~~~L----~ 103 (636)
..+|||+|++||||||+|+.+++ + ++.+|++|.+.+ +. ... -| .+- .-..+|-..|.+.+ .
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 35899999999999999999999 6 699999999732 11 000 01 111 11234444444332 1
Q ss_pred hhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH
Q 006667 104 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 183 (636)
Q Consensus 104 ~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE 183 (636)
.+..-+.+.+|......... ......+++++|=.+++.......+|..|.|++|.++++.|-++|+ +.|.+
T Consensus 80 ~~~~Le~i~hPli~~~~~~~-----~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~----~~~~e 150 (201)
T COG0237 80 ARLKLEKILHPLIRAEIKVV-----IDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD----GLDEE 150 (201)
T ss_pred HHHHHHHhhhHHHHHHHHHH-----HHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcC----CCCHH
Confidence 22222344455322211000 0111122778887777765556669999999999999988777765 56777
Q ss_pred HHHHHHHhcCCcchhhhccCCcCCccEEEeCCCCCC
Q 006667 184 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 219 (636)
Q Consensus 184 eVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~ 219 (636)
++......+ +|..++ ...||+||.|+....
T Consensus 151 ~~~~~~~~Q-~~~~ek-----~~~ad~vi~n~~~i~ 180 (201)
T COG0237 151 DAEARLASQ-RDLEEK-----LALADVVIDNDGSIE 180 (201)
T ss_pred HHHHHHHhc-CCHHHH-----HhhcCChhhcCCCHH
Confidence 766666444 555554 589999998876543
No 55
>PRK04182 cytidylate kinase; Provisional
Probab=98.97 E-value=4.6e-09 Score=99.34 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=78.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCCc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 122 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~ 122 (636)
+|+|+|++||||||+|+.|++.+ +..++++|++..... ...+. +...+.+ . ++ ..|.++.....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l-g~~~id~~~~~~~~~-~~~g~------~~~~~~~----~--~~--~~~~~~~~~~~ 65 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL-GLKHVSAGEIFRELA-KERGM------SLEEFNK----Y--AE--EDPEIDKEIDR 65 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEecHHHHHHHHH-HHcCC------CHHHHHH----H--hh--cCchHHHHHHH
Confidence 68999999999999999999999 588898876432110 00111 1111100 0 00 01111110000
Q ss_pred ccCcceeecC-CCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcc---hh
Q 006667 123 RIGYRTLEVP-SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPM---YK 198 (636)
Q Consensus 123 R~~~eti~v~-~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~---~e 198 (636)
. ..... ....+|++|.+..+ -+++..+++|||++|.+++..|...| .+++.++..........+. |.
T Consensus 66 ~----~~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r----~~~~~~~a~~~~~~~d~~~~~~~~ 136 (180)
T PRK04182 66 R----QLEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAER----EGISVEEALEETIEREESEAKRYK 136 (180)
T ss_pred H----HHHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111 23456778876543 12244789999999999876554444 3556666544433322222 11
Q ss_pred hhc---cCCcCCccEEEeCC
Q 006667 199 AFI---EPDLQTAHIKIINK 215 (636)
Q Consensus 199 kfI---ePtk~~ADIIIpN~ 215 (636)
.+. .|....||++|.++
T Consensus 137 ~~~~~~~~~~~~~d~~idt~ 156 (180)
T PRK04182 137 EYYGIDIDDLSIYDLVINTS 156 (180)
T ss_pred HHhCCCccccccccEEEECC
Confidence 121 34457899999743
No 56
>COG4240 Predicted kinase [General function prediction only]
Probab=98.97 E-value=1.8e-09 Score=109.62 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=106.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC-----CcEEEEcccccCCcc--c---cc-----CCCCCcccccHHHHHHHHHhhhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDSSR--I---ID-----GNFDDPRLTDYDTLLENIRGLKE 107 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~-----~v~VIsmDdY~~~~r--~---~d-----gnfD~P~afD~dlL~~~L~~Lk~ 107 (636)
++||+||.||||||+|..|...+. .+..+|+|+||.... . .. -.-.-|...|..++.+.|..+.+
T Consensus 52 i~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLnai~~ 131 (300)
T COG4240 52 IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIAR 131 (300)
T ss_pred EEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHHHHhc
Confidence 444599999999999999887752 578899999876421 1 00 12246889999999999999998
Q ss_pred CC-ceeeeeeeccC----CcccCcceeecCCCceEEEEehhhhhhcc---------cCC---------------------
Q 006667 108 GK-AVQVPIYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKL---------RPL--------------------- 152 (636)
Q Consensus 108 Gk-~I~iPvYDf~t----~~R~~~eti~v~~~dVIIVEGiyaL~~eL---------Rdl--------------------- 152 (636)
|. +|.+|.||.+. ++|........-+.+|+|+||+++...-+ +++
T Consensus 132 g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dvN~kLa~Y~p 211 (300)
T COG4240 132 GGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVNDKLAPYRP 211 (300)
T ss_pred CCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHHHhhhhhhHH
Confidence 76 67899999955 34432111122348999999999865211 111
Q ss_pred ----cc-EEEEEeCChhhHHHHHHhhhhh-----hcCCCHHHHHHHHHhcCCcchhhhccCCc
Q 006667 153 ----ID-LRVSVTGGVHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFIEPDL 205 (636)
Q Consensus 153 ----~D-LKIFVDad~D~RL~RRI~RDi~-----eRGrslEeVl~qyl~~VrP~~ekfIePtk 205 (636)
.| +.++-..+....+.+|++...+ ..|.+-+++ ..+-+..+|.|+-|+.+.-
T Consensus 212 L~~rIdsLillta~din~vy~WRlQqEhkliAr~~kgmsdeqv-~efvn~ymrsl~lylq~ls 273 (300)
T COG4240 212 LFDRIDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQV-SEFVNAYMRSLELYLQRLS 273 (300)
T ss_pred HHHHhhheeEecccchHHHHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 11 2233334444556777776654 346676665 3455666777877776543
No 57
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.96 E-value=3.3e-09 Score=99.72 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=82.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC-cccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 121 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~-~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~ 121 (636)
+|+|+|++||||||+|+.|++.+ ++.+++.|++... ... ... +...+.... .. .|.++....
T Consensus 2 iI~i~G~~GSGKstia~~la~~l-g~~~~~~~~~~~~~~~~--~g~------~~~~~~~~~---~~-----~~~~~~~~~ 64 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-SLKLISAGDIFRELAAK--MGL------DLIEFLNYA---EE-----NPEIDKKID 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCceecHHHHHHHHHHH--cCC------CHHHHHHHH---hc-----CcHHHHHHH
Confidence 79999999999999999999998 5889999875321 110 011 111110000 00 000000000
Q ss_pred cccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhhc
Q 006667 122 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 201 (636)
Q Consensus 122 ~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekfI 201 (636)
.... + . ....+.+|++|.+..+ .+++.+|++|||++|.++|..|...| .|.+.+++..++........+.|.
T Consensus 65 ~~i~-~-~-~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R----~~~s~~~a~~~~~~~d~~~~~~~~ 136 (171)
T TIGR02173 65 RRIH-E-I-ALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKR----EGKSLTVARSETIEREESEKRRYL 136 (171)
T ss_pred HHHH-H-H-HhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 1123466779987644 23567899999999999986665544 467888877766554433322222
Q ss_pred c---C---CcCCccEEEeC
Q 006667 202 E---P---DLQTAHIKIIN 214 (636)
Q Consensus 202 e---P---tk~~ADIIIpN 214 (636)
. + ....-|++|..
T Consensus 137 ~~~~~~~~~~~~ydl~i~t 155 (171)
T TIGR02173 137 KFYGIDIDDLSIYDLVINT 155 (171)
T ss_pred HHhCCCccccccccEEEEC
Confidence 2 1 23455788853
No 58
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.96 E-value=1.4e-09 Score=105.50 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=93.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC-CcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 121 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~-~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~ 121 (636)
+|.|+|++||||||+|+.|++.+ +..++|.-.+++ -.+... .++.-+.+ +.+ +.|..|....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl~~vsaG~iFR~~A~e~g--------msl~ef~~----~AE----~~p~iD~~iD 64 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GLKLVSAGTIFREMARERG--------MSLEEFSR----YAE----EDPEIDKEID 64 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CCceeeccHHHHHHHHHcC--------CCHHHHHH----HHh----cCchhhHHHH
Confidence 68999999999999999999999 588888776543 222111 11111111 111 1344444333
Q ss_pred cccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhhc
Q 006667 122 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 201 (636)
Q Consensus 122 ~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekfI 201 (636)
.+.. .....+=+|+||-++.+- .++..|++||+.+|.++|..|-..|+ |.+.++++.....+-+...++|-
T Consensus 65 ~rq~----e~a~~~nvVlegrLA~Wi-~k~~adlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~kRY~ 135 (179)
T COG1102 65 RRQK----ELAKEGNVVLEGRLAGWI-VREYADLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEKKRYK 135 (179)
T ss_pred HHHH----HHHHcCCeEEhhhhHHHH-hccccceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3321 122256789999999882 13788999999999999865555443 88999888776655554444443
Q ss_pred c------CCcCCccEEEe
Q 006667 202 E------PDLQTAHIKII 213 (636)
Q Consensus 202 e------Ptk~~ADIIIp 213 (636)
+ ....-.|+||.
T Consensus 136 ~~YgIDidDlSiyDLVin 153 (179)
T COG1102 136 KIYGIDIDDLSIYDLVIN 153 (179)
T ss_pred HHhCCCCccceeeEEEEe
Confidence 2 23566788885
No 59
>PRK01184 hypothetical protein; Provisional
Probab=98.94 E-value=2.9e-09 Score=102.53 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=85.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhC--CCceeeeeeecc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKE--GKAVQVPIYDFK 119 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~--Gk~I~iPvYDf~ 119 (636)
.+|+|+|++||||||+|+ +++.+ ++.++++|+..+..- ....+.... +.+.+....++. +.. .+...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~-g~~~i~~~d~lr~~~-~~~~~~~~~----~~~g~~~~~~~~~~~~~----~~~~~ 70 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM-GIPVVVMGDVIREEV-KKRGLEPTD----ENIGKVAIDLRKELGMD----AVAKR 70 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc-CCcEEEhhHHHHHHH-HHcCCCCCc----HHHHHHHHHHHHHHChH----HHHHH
Confidence 489999999999999997 66677 588999976432110 001111000 111111111111 000 00000
Q ss_pred CCcccCcceeecCCCceEEEEehhhhh--hcccCCcc---EEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCC
Q 006667 120 SSSRIGYRTLEVPSSRIVIIEGIYALS--EKLRPLID---LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 194 (636)
Q Consensus 120 t~~R~~~eti~v~~~dVIIVEGiyaL~--~eLRdl~D---LKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~Vr 194 (636)
.+. .+...+..++|++|+..+. ..+++.++ ..|||++|.+.++.|...|+....+.+.+++.++...+..
T Consensus 71 ~~~-----~i~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~ 145 (184)
T PRK01184 71 TVP-----KIREKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELS 145 (184)
T ss_pred HHH-----HHHhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhc
Confidence 010 1111345789999984433 34555555 8999999999988776665432224456666666644321
Q ss_pred cchhhhccCCcCCccEEEeCCC
Q 006667 195 PMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 195 P~~ekfIePtk~~ADIIIpN~f 216 (636)
+. +.+..+.||++|.|+.
T Consensus 146 ~~----~~~~~~~ad~vI~N~~ 163 (184)
T PRK01184 146 WG----IGEVIALADYMIVNDS 163 (184)
T ss_pred cC----HHHHHHhcCEEEeCCC
Confidence 11 2334478999998754
No 60
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.88 E-value=7e-09 Score=103.19 Aligned_cols=170 Identities=17% Similarity=0.294 Sum_probs=128.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCccc-------------ccCCCCCcccccHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-------------IDGNFDDPRLTDYDTLLENIR 103 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~-------------~dgnfD~P~afD~dlL~~~L~ 103 (636)
-++|+|+|.||+|-||......+.|. ...-|.-|+|++..+. .+..|-.|++.|++.|.+.+.
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~ 84 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI 84 (289)
T ss_pred CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence 45899999999999999998888875 3567888999764321 233455699999999999988
Q ss_pred hhhCCCceeeee----------eeccCCcccCcceeecCCCceEEEEehhhhh--h--cccCCccEEEEEeCChhhHHHH
Q 006667 104 GLKEGKAVQVPI----------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS--E--KLRPLIDLRVSVTGGVHFDLVK 169 (636)
Q Consensus 104 ~Lk~Gk~I~iPv----------YDf~t~~R~~~eti~v~~~dVIIVEGiyaL~--~--eLRdl~DLKIFVDad~D~RL~R 169 (636)
..-+...-.... |+...++-..|+.+ -++.+++..||++... + .+.+.+|++|-|-.=.....+.
T Consensus 85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l-pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWIQ 163 (289)
T COG3954 85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL-PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQ 163 (289)
T ss_pred HhcccCCcchhhhhhchhhcCccCCCCCCCCCcccC-CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHHH
Confidence 765422211112 22222333444443 2558999999998865 2 5778999999998888888899
Q ss_pred HHhhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEE
Q 006667 170 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 212 (636)
Q Consensus 170 RI~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIII 212 (636)
++.||..+||.+.|.|.+-.... .|.|.+||-|...+.||-.
T Consensus 164 K~~RDt~~RGhSrEAVmDsivRs-MdDYinyItPQFSrThINF 205 (289)
T COG3954 164 KLIRDTSERGHSREAVMDSVVRS-MDDYINYITPQFSRTHINF 205 (289)
T ss_pred HHHhcccccCccHHHHHHHHHHh-hhhHHhhcCccccccccce
Confidence 99999999999999999988755 6889999999988888754
No 61
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.86 E-value=6.7e-09 Score=104.84 Aligned_cols=168 Identities=12% Similarity=0.124 Sum_probs=95.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc--ccCCCCCcccccHHHHHHHHHhhhCCC-----ceee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI--IDGNFDDPRLTDYDTLLENIRGLKEGK-----AVQV 113 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~--~dgnfD~P~afD~dlL~~~L~~Lk~Gk-----~I~i 113 (636)
..+|+|.|++||||||+|+.|++.+ ++..++.+.+++.-.. ...+++ + -|.+.+.+.+..+...- ....
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~-~~~~~~~~~~~r~~~~~~~~~g~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL-GFHYLDTGAMYRAVALAALRHGVD-L--EDEEALVALAAHLDISFESDPGGQRV 79 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCCcccCchhHHHHHHHHHHcCCC-C--CCHHHHHHHHhcCCeEEecCCCcceE
Confidence 3589999999999999999999999 4888999987643110 111221 1 12233333222211000 0000
Q ss_pred eeeeccCCc-------------ccCc----cee-----ecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHH
Q 006667 114 PIYDFKSSS-------------RIGY----RTL-----EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV 171 (636)
Q Consensus 114 PvYDf~t~~-------------R~~~----eti-----~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI 171 (636)
...+..... .... ..+ .+....-+|++|..... .+.+..+++|||++|.+.|..||.
T Consensus 80 ~~~~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~-~vl~~a~~~ifl~a~~e~R~~Rr~ 158 (225)
T PRK00023 80 FLNGEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGT-VVFPDAELKIFLTASAEERAERRY 158 (225)
T ss_pred EECCcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChhe-EEeCCCCEEEEEECCHHHHHHHHH
Confidence 000000000 0000 000 01223458999987443 234448999999999999866666
Q ss_pred hhhhhh-cCCCHHHHHHHHHhcCCcchhhhccCCcCCcc-EEEe
Q 006667 172 FRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKII 213 (636)
Q Consensus 172 ~RDi~e-RGrslEeVl~qyl~~VrP~~ekfIePtk~~AD-IIIp 213 (636)
.+.... .+.+.+++.+.....-+-....++.|.+..+| ++|.
T Consensus 159 ~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~ID 202 (225)
T PRK00023 159 KELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLD 202 (225)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEE
Confidence 554322 24577778777776655555667888777777 6664
No 62
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.84 E-value=1.1e-08 Score=102.99 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=95.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc--cccCCCCCcccccHHHHHHHHHhhhC------------
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDPRLTDYDTLLENIRGLKE------------ 107 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r--~~dgnfD~P~afD~dlL~~~L~~Lk~------------ 107 (636)
.+|+|.||+||||||+++.|++.++ ..+++.+++++.-. ....+++.+ |-+.+...+..+.-
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~-~~~~~~g~~~r~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG-YAYLDSGAMYRAIALAALQNRVDLT---SEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CceeeCchHHHHHHHHHHHcCCCCC---CHHHHHHHHHhCCCEEecCCCceeEE
Confidence 4799999999999999999999994 78888888653210 001112111 22222222221100
Q ss_pred --C-----------------CceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHH
Q 006667 108 --G-----------------KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV 168 (636)
Q Consensus 108 --G-----------------k~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~ 168 (636)
| ....+|......... ........-+|+||.++... +.+-.|++||+++|.+.|..
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~----qr~~a~~~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra~ 153 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKR----QQALAKNDGIIADGRDIGTV-VFPNAEVKIFLDASVEERAK 153 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHH----HHHHhhcCCEEEEEcCcceE-EeCCCCEEEEEECCHHHHHH
Confidence 0 000111110000000 00112224589999985543 34448999999999999988
Q ss_pred HHHhhhhhh-cCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEe
Q 006667 169 KRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 213 (636)
Q Consensus 169 RRI~RDi~e-RGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIp 213 (636)
||..|.... ...+.+++.+++..+..-...+++.|.+...|.++.
T Consensus 154 Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~I 199 (217)
T TIGR00017 154 RRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYL 199 (217)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEE
Confidence 888776532 245778999999877555556666776666666544
No 63
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.80 E-value=5.8e-08 Score=97.98 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=103.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc----cccCCCCCcccccHHHHHHHHHhhhC--CC--ceee
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR----IIDGNFDDPRLTDYDTLLENIRGLKE--GK--AVQV 113 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r----~~dgnfD~P~afD~dlL~~~L~~Lk~--Gk--~I~i 113 (636)
.+|+|.||+||||||+|+.|++.|+ ...++.-.+|+.-- ....+++ |.+.+.+.+..+.- .. .+.+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg-~~yldTGamYRa~a~~~l~~~~~~~-----d~~~~~~l~~~~~i~f~~~~~v~l 78 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG-FHYLDTGAMYRAVALAALKHGVDLD-----DEDALVALAKELDISFVNDDRVFL 78 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC-CCeecccHHHHHHHHHHHHcCCCCc-----cHHHHHHHHHhCCceecccceEEE
Confidence 5799999999999999999999994 77777777554210 0112332 33334433332211 00 0100
Q ss_pred eeeeccCCcccC--------------------cceeec-CCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHh
Q 006667 114 PIYDFKSSSRIG--------------------YRTLEV-PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF 172 (636)
Q Consensus 114 PvYDf~t~~R~~--------------------~eti~v-~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~ 172 (636)
.--|-+..-|.. ...... ...+=+|+||--+.. .+.+-.++|||+++..++|-.||.+
T Consensus 79 ~gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~ 157 (222)
T COG0283 79 NGEDVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYK 157 (222)
T ss_pred CCchhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHH
Confidence 000000000000 000001 122458899988763 5678889999999999999888887
Q ss_pred hhhhhcCC--CHHHHHHHHHhcCCcchhhhccCCcCCccEEEe
Q 006667 173 RDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 213 (636)
Q Consensus 173 RDi~eRGr--slEeVl~qyl~~VrP~~ekfIePtk~~ADIIIp 213 (636)
... ..|. ..++++..+..+..-...+-+.|-+...|.++.
T Consensus 158 q~~-~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~i 199 (222)
T COG0283 158 QLQ-AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLL 199 (222)
T ss_pred HHH-hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEE
Confidence 654 4442 368999999988888888889999999999886
No 64
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.78 E-value=1e-08 Score=102.37 Aligned_cols=164 Identities=17% Similarity=0.152 Sum_probs=110.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC----C--c---cccc---CCCCCcc-cccHHHHHHHHH----h
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----S--S---RIID---GNFDDPR-LTDYDTLLENIR----G 104 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~----~--~---r~~d---gnfD~P~-afD~dlL~~~L~----~ 104 (636)
.+||++|++||||||+++.+.+ + ++.+|+.|...+ + + +... ....+|+ .+|.+.|-+.+. .
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~-~-G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFKA-L-GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred eEEEeecccccChHHHHHHHHH-c-CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 5789999999999999999995 5 699999998632 1 1 0100 1122232 345555554432 1
Q ss_pred hhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH
Q 006667 105 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 184 (636)
Q Consensus 105 Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe 184 (636)
...-..+.+|......-... -...+...++||++-.++|...+.+++...|-|.+|.++.+.|-+.|| +.+.++
T Consensus 80 r~~Ln~IthP~Ir~em~ke~--~~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd----~lse~d 153 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEI--LKLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERD----ELSEED 153 (225)
T ss_pred HHHHHhcccHHHHHHHHHHH--HHHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhc----cccHHH
Confidence 22223466666443321110 012346778999999999988888999999999999999998888887 677777
Q ss_pred HHHHHHhcCCcchhhhccCCcCCccEEEeCCCCCC
Q 006667 185 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 219 (636)
Q Consensus 185 Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~ 219 (636)
.-++...+ .|.. ..++.||+||.|+.+++
T Consensus 154 Ae~Rl~sQ-mp~~-----~k~~~a~~Vi~Nng~~~ 182 (225)
T KOG3220|consen 154 AENRLQSQ-MPLE-----KKCELADVVIDNNGSLE 182 (225)
T ss_pred HHHHHHhc-CCHH-----HHHHhhheeecCCCChH
Confidence 77777554 4443 33689999998776553
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.78 E-value=5.1e-08 Score=113.34 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=109.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc----ccCCCCCcccccHHHHHHHHHhhhCCCceee---ee
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PI 115 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~----~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~i---Pv 115 (636)
+|+|+||+||||||+|+.|++.++ ...++...+|+.-.. .+.+++ -..+|.+.+.+.+..+..+-.+.+ |.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~-~~~~~~g~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG-YAYLDTGAMYRACAWWCLKQGIDLD-AELVDEQVVTEAVGEFFTGLHFDISVDPD 80 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEeecCcEeHHHHHHHHhcCCCcc-hhhhhhhhhHHHHHHHHhCCcEEEecCCC
Confidence 789999999999999999999994 889999987654211 111111 112344566666655544322222 10
Q ss_pred --------eeccCC------------------ccc---C-cceee-cCC-------CceEEEEehhhhhhcccCCccEEE
Q 006667 116 --------YDFKSS------------------SRI---G-YRTLE-VPS-------SRIVIIEGIYALSEKLRPLIDLRV 157 (636)
Q Consensus 116 --------YDf~t~------------------~R~---~-~eti~-v~~-------~dVIIVEGiyaL~~eLRdl~DLKI 157 (636)
.|-... -|. . .+.+. ..+ ..-||+||-.+.. .+.+-.|+||
T Consensus 81 ~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigt-vv~p~a~~K~ 159 (712)
T PRK09518 81 SPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITT-VVAPDAEVRI 159 (712)
T ss_pred CcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccce-EEecCCCeEE
Confidence 000000 000 0 00000 011 1259999999875 4556789999
Q ss_pred EEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 158 SVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 158 FVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
|++++.++|-.||..++.. .+.+++++....+..-.. +.+.|.+...|.++.++
T Consensus 160 ~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idt 213 (712)
T PRK09518 160 LLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDN 213 (712)
T ss_pred EEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEEC
Confidence 9999999999999888754 789999999999988888 99999877777776543
No 66
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.77 E-value=2.6e-08 Score=97.95 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=88.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc-----ccCCCCCcccccHHHHHHHHHhhhCCCceeee
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 114 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~-----~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iP 114 (636)
+.++|.|+||||||||||++.|.+.+|++ ..+...-.++++. .+|.|-..+.| ...+.+|+.+++-
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F--------~~~i~~~~f~e~~ 73 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFLTIEEF--------KKGIADGEFLEWA 73 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeCCHHHH--------HHHHHcCCeEEEE
Confidence 35789999999999999999999988743 3333322344332 23444432222 2345678888886
Q ss_pred eeeccCC-cccCcceeecCCCceEEEEehhhhhhcccCCc-c--EEEEEeCChhhHHHHHHhhhhhhcC-CCHHHHHHHH
Q 006667 115 IYDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI-D--LRVSVTGGVHFDLVKRVFRDIQRVG-QEPEEIIHQI 189 (636)
Q Consensus 115 vYDf~t~-~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~-D--LKIFVDad~D~RL~RRI~RDi~eRG-rslEeVl~qy 189 (636)
.|+-... +....-........++|++.-.-....++..+ + +.|||.+|....+.+|+.+ || .+.+++..+.
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~----R~~~s~e~i~~Rl 149 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIH----RGTDSEESIEKRI 149 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHh----cCCCCHHHHHHHH
Confidence 6553321 11110001134556777773332222333332 3 6899998765555555532 34 3555655555
Q ss_pred HhcCCcchhhhccCCcCCccEEEeCC
Q 006667 190 SETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 190 l~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
... .+.. .....||++|.|+
T Consensus 150 ~~~-~~e~-----~~~~~~D~vI~N~ 169 (186)
T PRK14737 150 ENG-IIEL-----DEANEFDYKIIND 169 (186)
T ss_pred HHH-HHHH-----hhhccCCEEEECc
Confidence 433 3322 2357899999886
No 67
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.74 E-value=6.9e-08 Score=96.75 Aligned_cols=159 Identities=23% Similarity=0.280 Sum_probs=106.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC-------CcEEEEcccccCCccc------c-cC-----CCCCcccccHHHHHHHH
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP-------SIAVITMDNYNDSSRI------I-DG-----NFDDPRLTDYDTLLENI 102 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~-------~v~VIsmDdY~~~~r~------~-dg-----nfD~P~afD~dlL~~~L 102 (636)
-+|+++||.||||||++-+|-..+. .+..+|.|+||..... . .+ .-..|.+.|+..+.+.|
T Consensus 32 l~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~evL 111 (282)
T KOG2878|consen 32 LVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVEVL 111 (282)
T ss_pred EEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHHHH
Confidence 3788899999999999988765531 5789999999753210 0 01 12357889999999999
Q ss_pred HhhhC----CCceeeeeeeccC----CcccC-cceeecCCCceEEEEehhhhhhcc-------cCC--------------
Q 006667 103 RGLKE----GKAVQVPIYDFKS----SSRIG-YRTLEVPSSRIVIIEGIYALSEKL-------RPL-------------- 152 (636)
Q Consensus 103 ~~Lk~----Gk~I~iPvYDf~t----~~R~~-~eti~v~~~dVIIVEGiyaL~~eL-------Rdl-------------- 152 (636)
..+.+ |..+.+|.||... +.|.. ..+..+.|..++|+||+++.++.| ++.
T Consensus 112 na~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN~kL~~ 191 (282)
T KOG2878|consen 112 NALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVNKKLEA 191 (282)
T ss_pred HHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccCcccccHHHHhhHHHH
Confidence 88776 4469999999875 33432 234456788999999999876322 111
Q ss_pred --------ccEEEEEe-CChhhHHHHHHhhhhh-----hcCCCHHHHHHHHHhcCCcchhhhc
Q 006667 153 --------IDLRVSVT-GGVHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFI 201 (636)
Q Consensus 153 --------~DLKIFVD-ad~D~RL~RRI~RDi~-----eRGrslEeVl~qyl~~VrP~~ekfI 201 (636)
.|-.|-+. -+..-...||++..++ ..|.+-|+|. .|-++..|.|..|+
T Consensus 192 Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~-~FV~rYmP~Yk~YL 253 (282)
T KOG2878|consen 192 YYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVN-DFVSRYMPAYKAYL 253 (282)
T ss_pred HHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHH-HHHHhhhhHHHhhh
Confidence 11112222 2223345677777665 3478888875 44467789998876
No 68
>PRK08356 hypothetical protein; Provisional
Probab=98.73 E-value=5.5e-08 Score=95.33 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=80.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCc-c--cccCCCCCcccccH----HHHHHHHHhhhCCCce
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-R--IIDGNFDDPRLTDY----DTLLENIRGLKEGKAV 111 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~-r--~~dgnfD~P~afD~----dlL~~~L~~Lk~Gk~I 111 (636)
.+..+|+|+||+||||||+|+.|++ + ++.+|++.+..+.. + ..++.|.....+.. +.+.+.=.-+.+
T Consensus 3 ~~~~~i~~~G~~gsGK~t~a~~l~~-~-g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~---- 76 (195)
T PRK08356 3 VEKMIVGVVGKIAAGKTTVAKFFEE-K-GFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKE---- 76 (195)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH-C-CCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHH----
Confidence 3456899999999999999999975 6 57799999854321 1 12334432211111 111111110100
Q ss_pred eeeeeeccCCcccCcceeecCCCceEEEEehhhhh--hcccCCccEEEEEeCChhhHHHHHHhhhhhhc--CCCHHHHHH
Q 006667 112 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS--EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIH 187 (636)
Q Consensus 112 ~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~--~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eR--GrslEeVl~ 187 (636)
.|.-..-.....+.+ .....++++|+-... ..+.......|||++|.+++..|-..|+...+ ..+.+++..
T Consensus 77 ---~yG~~~~~~~~~~~~--~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~ 151 (195)
T PRK08356 77 ---KYGEDILIRLAVDKK--RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLK 151 (195)
T ss_pred ---hcCcHHHHHHHHHHh--ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHH
Confidence 011000000000011 122358999996654 23455457899999999875444333432111 114444433
Q ss_pred HHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 188 QISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 188 qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
.+. .....|. ..-..+.||++|.|+
T Consensus 152 ~~~-~~~~l~~--~~~~~~~aD~vI~N~ 176 (195)
T PRK08356 152 FDE-WEEKLYH--TTKLKDKADFVIVNE 176 (195)
T ss_pred HHH-HHHHhhh--hhhHHHhCcEEEECC
Confidence 332 1111111 112246899999874
No 69
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.71 E-value=7.8e-08 Score=110.98 Aligned_cols=167 Identities=13% Similarity=0.143 Sum_probs=108.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc--ccCCCCCcccccHHHHHHHHHhhhC---CCceeeeee
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI--IDGNFDDPRLTDYDTLLENIRGLKE---GKAVQVPIY 116 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~--~dgnfD~P~afD~dlL~~~L~~Lk~---Gk~I~iPvY 116 (636)
.+|.|.||+||||||+|+.|++.| +..+++.+.+|+.... .+.+.+ ..|.+.+.+.+..+.- +..+.+.--
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEAL-GYHYLDSGALYRLTALAALRAGVA---LDDEAAIAALARGLPVRFEGDRIWLGGE 518 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHh-CCeEecHHHhhhHHHHHHHHcCcC---CCCHHHHHHHHhcCCeeecCCeEEECCe
Confidence 379999999999999999999999 5888999998764311 111221 1244555554443221 001111000
Q ss_pred eccCCcccC-----------c---------ceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhh
Q 006667 117 DFKSSSRIG-----------Y---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 176 (636)
Q Consensus 117 Df~t~~R~~-----------~---------eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~ 176 (636)
|-...-|.. . .........=||+||-.+.. .+.+-.|+|||++++.++|-.||.....
T Consensus 519 ~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdigt-vv~p~a~~kifl~a~~~~Ra~Rr~~~~~- 596 (661)
T PRK11860 519 DVTDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMGT-VIFPDAALKVFLTASAEARAERRYKQLI- 596 (661)
T ss_pred EchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCcc-EECCCCCeEEEEECChhHHHHHHHHHHH-
Confidence 100000000 0 00001122348999998875 4567799999999999999888876543
Q ss_pred hcCC--CHHHHHHHHHhcCCcchhhhccCCcCCccEEEeC
Q 006667 177 RVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 214 (636)
Q Consensus 177 eRGr--slEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN 214 (636)
++|. +.+++++....+.+-+..+++.|.+...|.|+.+
T Consensus 597 ~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~id 636 (661)
T PRK11860 597 SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLD 636 (661)
T ss_pred hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEE
Confidence 4454 8999999999888888889999998887877764
No 70
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.60 E-value=8.9e-08 Score=91.74 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=74.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 116 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvY 116 (636)
..+|.++|++||||||+|+.|++.+. ++.+++.|.++..- ....|+.+...+......++..+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~--~~~~~~~~~~~~~~~~~~~l~~~l---------- 74 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL--GHYGYDKQSRIEMALKRAKLAKFL---------- 74 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc--CCCCCCHHHHHHHHHHHHHHHHHH----------
Confidence 45899999999999999999999874 36677777764311 112343333222222222222211
Q ss_pred eccCCcccCcceeecCCCceEEEEehhhhh---hcccCC--ccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHh
Q 006667 117 DFKSSSRIGYRTLEVPSSRIVIIEGIYALS---EKLRPL--IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 191 (636)
Q Consensus 117 Df~t~~R~~~eti~v~~~dVIIVEGiyaL~---~eLRdl--~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~ 191 (636)
.....+||++|..... ...+.. -++.||+++|.++.+ +|+.|.... +...+++...| .
T Consensus 75 --------------~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~-~R~~~~l~~-~~~~~~~~~~~-~ 137 (176)
T PRK05541 75 --------------ADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELI-RRDQKGLYT-KALKGEIKNVV-G 137 (176)
T ss_pred --------------HhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHH-HhchhhHHH-HHHcCcccccc-c
Confidence 0122456666665431 111111 146899999999754 444432111 11112222222 3
Q ss_pred cCCcchhhhccCCcCCccEEEeCC
Q 006667 192 TVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 192 ~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
...|.|+ ..||++|.|+
T Consensus 138 ~~~~~~~-------~~Ad~vI~~~ 154 (176)
T PRK05541 138 VDIPFDE-------PKADLVIDNS 154 (176)
T ss_pred CCCcccC-------CCCCEEEeCC
Confidence 4345443 2489999864
No 71
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.59 E-value=2.7e-07 Score=88.41 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=31.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+|+|.|++||||||+|+.|++.+ ++..|++++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-~~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-GFTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-CCeEEECChHHH
Confidence 58899999999999999999999 589999988643
No 72
>PRK04040 adenylate kinase; Provisional
Probab=98.59 E-value=2.2e-07 Score=91.57 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=83.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccccCCcccccCCCCCcc---cccHHHHHHHHHhhhCCCceeeeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPR---LTDYDTLLENIRGLKEGKAVQVPIY 116 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY~~~~r~~dgnfD~P~---afD~dlL~~~L~~Lk~Gk~I~iPvY 116 (636)
.++|+|+|.+||||||+++.|++.++ ++.+++.++|....-...+-+.+.+ .++.+ ....+..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~-~~~~~~~~a---------- 70 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPE-EQKELQREA---------- 70 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChh-hhHHHHHHH----------
Confidence 35899999999999999999999996 6889999997532110111111111 01100 000011000
Q ss_pred eccCCcccCcceeecCCCceEEEEehhhhh-h----------cccC-CccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH
Q 006667 117 DFKSSSRIGYRTLEVPSSRIVIIEGIYALS-E----------KLRP-LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 184 (636)
Q Consensus 117 Df~t~~R~~~eti~v~~~dVIIVEGiyaL~-~----------eLRd-l~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe 184 (636)
.... ........+|++|.+++. + -+.+ ..|..|+++++++..+.||+.-....|+.+.++
T Consensus 71 ----~~~i----~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e 142 (188)
T PRK04040 71 ----AERI----AEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEE 142 (188)
T ss_pred ----HHHH----HHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHH
Confidence 0000 001223446667755422 1 1122 458999999999987777664322335555566
Q ss_pred HHHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 185 IIHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 185 Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
.++.+++..+- |..++.-.....+++|.|.
T Consensus 143 ~I~~~~~~a~~-~a~~~a~~~g~~~~iI~N~ 172 (188)
T PRK04040 143 DIEEHQEMNRA-AAMAYAVLTGATVKIVENR 172 (188)
T ss_pred HHHHHHHHHHH-HHHHHHHhcCCeEEEEECC
Confidence 66666554332 2233333334568888764
No 73
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.59 E-value=1e-07 Score=79.14 Aligned_cols=57 Identities=33% Similarity=0.595 Sum_probs=46.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 120 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t 120 (636)
+|+|+|++||||||+++.|++.|. ++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~------------------------------------------------ 32 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLD------------------------------------------------ 32 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEe------------------------------------------------
Confidence 478999999999999999999861 111110
Q ss_pred CcccCcceeecCCCceEEEEehhhhhh----cccCCccEEEEEeC
Q 006667 121 SSRIGYRTLEVPSSRIVIIEGIYALSE----KLRPLIDLRVSVTG 161 (636)
Q Consensus 121 ~~R~~~eti~v~~~dVIIVEGiyaL~~----eLRdl~DLKIFVDa 161 (636)
.++|+||.+.+.. .+++.+|++||+|+
T Consensus 33 --------------~~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 33 --------------EIVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred --------------EEEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 0999999999984 68899999999998
No 74
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.57 E-value=2.2e-07 Score=88.82 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=68.7
Q ss_pred ccceEEeeecCCeEEEEEeeeecCCCcccccceeEEEeeech--hhhhhcCCeEEEEEEeeeeeeeeCCEEEEeeccccc
Q 006667 270 CQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLL--GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQL 347 (636)
Q Consensus 270 tdeaLRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v~~~--~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~L 347 (636)
-+++||+|..++.+.||||+|+.+ ..|.|+|..+... +.|.. +..+..|.|.|.+|..++.++++|.++|+
T Consensus 33 ~~~~lRiR~~~~~~~lT~K~~~~~-----~~R~E~E~~i~~~~~~~l~~--~~~~~~I~K~R~~~~~~~~~~~lD~~~g~ 105 (148)
T cd07891 33 PERTVRVRIAGDRAYLTIKGPTNG-----LSRYEFEYEIPLADAEELLA--LCEGPVIEKTRYRVPHGGHTWEVDVFHGE 105 (148)
T ss_pred CCcEEEEEEeCCEEEEEEEeCCCC-----ceEEEEEEeCCHHHHHHHHh--cCCCCeEEEEEEEEEeCCEEEEEEEEcCC
Confidence 357999999999999999999876 4588888888443 33544 66788999999999999999999999999
Q ss_pred Ccc--eEEEecccH
Q 006667 348 NRK--YVQVQGRDR 359 (636)
Q Consensus 348 g~~--FveIeg~~r 359 (636)
|.. |+|||..+-
T Consensus 106 ~~gL~~~EiE~~~e 119 (148)
T cd07891 106 NAGLVVAEIELPSE 119 (148)
T ss_pred CCceEEEEEEcCCc
Confidence 952 999996543
No 75
>PLN02200 adenylate kinase family protein
Probab=98.55 E-value=1.8e-07 Score=95.22 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=66.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 120 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t 120 (636)
+.+|+|.|++||||||+|+.|++.+ ++..|++++..+.... . + ..+...+.+. +..|+.+.-.......
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~-g~~his~gdllR~~i~--~--~---s~~~~~i~~~---~~~G~~vp~e~~~~~l 111 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF-GFKHLSAGDLLRREIA--S--N---SEHGAMILNT---IKEGKIVPSEVTVKLI 111 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh-CCeEEEccHHHHHHHh--c--c---ChhHHHHHHH---HHcCCCCcHHHHHHHH
Confidence 4689999999999999999999999 5889999876432110 0 0 0111122222 2234322110000000
Q ss_pred CcccCcceeecCCCceEEEEehhh-------hhhcccCCccEEEEEeCChhhHHHHHHhhh
Q 006667 121 SSRIGYRTLEVPSSRIVIIEGIYA-------LSEKLRPLIDLRVSVTGGVHFDLVKRVFRD 174 (636)
Q Consensus 121 ~~R~~~eti~v~~~dVIIVEGiya-------L~~eLRdl~DLKIFVDad~D~RL~RRI~RD 174 (636)
. +.+......-+|++|..- |...+....|..||++++.++.+.|...|.
T Consensus 112 ~-----~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 112 Q-----KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred H-----HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 0 001111224589999532 211223358999999999999777666664
No 76
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.55 E-value=4.3e-07 Score=86.67 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=31.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.++|+|.|++||||||+|+.|++.+ +...++++++.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~-g~~~~~~g~~~ 38 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY-GFTHLSTGDLL 38 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHH
Confidence 4689999999999999999999999 58889998753
No 77
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.54 E-value=5.7e-07 Score=85.93 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=80.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCc--ccccHHHHHHHHHhhhCCCceeeeeeecc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDP--RLTDYDTLLENIRGLKEGKAVQVPIYDFK 119 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P--~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~ 119 (636)
++|+|.||+||||||+++.|++.++.. .++.....+.+.. +..+.. ...+.+.+.+. +..++.+....|.-.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~-~~~~~~~tr~~~~--g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL-KFSISATTRKPRP--GEVDGVDYFFVSKEEFEEM---IAAGEFLEWAEVHGN 75 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccc-cccccceeeCCCC--CCcCCcEEEEecHHHHHHH---HHcCCcEEEEEECCe
Confidence 689999999999999999999987632 2222111111111 111100 01122233222 345655555433211
Q ss_pred CCcccCccee--ecCCCceEEEEehhhhhhcccCCc-c-EEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCc
Q 006667 120 SSSRIGYRTL--EVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 195 (636)
Q Consensus 120 t~~R~~~eti--~v~~~dVIIVEGiyaL~~eLRdl~-D-LKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP 195 (636)
..... ...+ ......++|++........+++.+ + ..||+..+.+..+.+|+. +||...++.+.+++....+
T Consensus 76 ~y~~~-~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~----~r~~~~~~~i~~rl~~~~~ 150 (180)
T TIGR03263 76 YYGTP-KSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLR----KRGTDSEEVIERRLAKAKK 150 (180)
T ss_pred eeCCc-HHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----HcCCCCHHHHHHHHHHHHH
Confidence 11100 0001 123345666654433333333323 3 578887776666666664 4566556556666555544
Q ss_pred chhhhccCCcCCccEEEeCC
Q 006667 196 MYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 196 ~~ekfIePtk~~ADIIIpN~ 215 (636)
..+ . .+.+|++|.|+
T Consensus 151 ~~~----~-~~~~d~~i~n~ 165 (180)
T TIGR03263 151 EIA----H-ADEFDYVIVND 165 (180)
T ss_pred HHh----c-cccCcEEEECC
Confidence 321 2 45699999874
No 78
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.53 E-value=1.6e-06 Score=83.14 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=23.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+++|.|+|||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999999875
No 79
>PRK03839 putative kinase; Provisional
Probab=98.50 E-value=6.3e-07 Score=86.20 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=61.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCCc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 122 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~ 122 (636)
.|.|.|++||||||+|+.|++.+ +..++++|++....... .-++......+..+...+....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-~~~~id~d~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~---------------- 63 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-GYEYVDLTEFALKKGIG-EEKDDEMEIDFDKLAYFIEEEF---------------- 63 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEehhhhhhhcCCc-ccCChhhhcCHHHHHHHHHHhc----------------
Confidence 58899999999999999999999 58899999986432111 1122222234444444332110
Q ss_pred ccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHh
Q 006667 123 RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF 172 (636)
Q Consensus 123 R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~ 172 (636)
. .+.+|++|.+.. +. ..|..||++++.++.. +|+.
T Consensus 64 ---------~-~~~vIidG~~~~---l~-~~~~vi~L~~~~~~~~-~Rl~ 98 (180)
T PRK03839 64 ---------K-EKNVVLDGHLSH---LL-PVDYVIVLRAHPKIIK-ERLK 98 (180)
T ss_pred ---------c-CCCEEEEecccc---cc-CCCEEEEEECCHHHHH-HHHH
Confidence 0 123677886543 22 3689999999999864 4443
No 80
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=6.1e-07 Score=88.96 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=92.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCc-EEEEcccccCCccc-----ccCCCCCcccccHHHHHHHHHhhhCCCceee
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSI-AVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 113 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v-~VIsmDdY~~~~r~-----~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~i 113 (636)
...++.|+||||+||||++++|.+.. +. ..||+- .+.++. .+|+|-..+. ....+.+++.++|
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~T--TR~pR~gEv~G~dY~Fvs~~E--------F~~~i~~~~fLE~ 71 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSAT--TRKPRPGEVDGVDYFFVTEEE--------FEELIERDEFLEW 71 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEec--cCCCCCCCcCCceeEeCCHHH--------HHHHHhcCCcEEE
Confidence 35799999999999999999999987 32 233333 344432 3456643332 2344567888888
Q ss_pred eeeeccC-CcccCc-ceeecCCCc-eEEEEehhhhhhcccCCc-c-EEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHH
Q 006667 114 PIYDFKS-SSRIGY-RTLEVPSSR-IVIIEGIYALSEKLRPLI-D-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 188 (636)
Q Consensus 114 PvYDf~t-~~R~~~-eti~v~~~d-VIIVEGiyaL~~eLRdl~-D-LKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~q 188 (636)
-.|.-.- ++...+ +.......+ ++.+|.-.++. +++.+ | ..||+.+|.-..|.+|+.+ ||.+.++++..
T Consensus 72 a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~q--vk~~~p~~v~IFi~pPs~eeL~~RL~~----Rgtds~e~I~~ 145 (191)
T COG0194 72 AEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQ--VKKKMPNAVSIFILPPSLEELERRLKG----RGTDSEEVIAR 145 (191)
T ss_pred EEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHH--HHHhCCCeEEEEEcCCCHHHHHHHHHc----cCCCCHHHHHH
Confidence 7765432 111110 001112223 34445544443 23222 4 6799999999988888754 78888888777
Q ss_pred HHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 189 ISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 189 yl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
-+...+-....+ ...|++|.|+
T Consensus 146 Rl~~a~~Ei~~~-----~~fdyvivNd 167 (191)
T COG0194 146 RLENAKKEISHA-----DEFDYVIVND 167 (191)
T ss_pred HHHHHHHHHHHH-----HhCCEEEECc
Confidence 766655554433 3479999764
No 81
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.48 E-value=4e-07 Score=88.14 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=81.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC---cEEEEcccccCCccc-----ccCCCCCcccccHHHHHHHHHhhhCCCcee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS---IAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ 112 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~---v~VIsmDdY~~~~r~-----~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~ 112 (636)
.++|.|.||||||||||++.|.+.+|. ..+-++. ++++. .+|.|-.++. + .....+|+.++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT---R~~r~~E~~g~~y~fvs~~~-----f---~~~~~~~~fie 70 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT---RPPRPGEVDGVDYHFVSKEE-----F---ERMIKAGEFIE 70 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES---S-GGTTS-TTTSEEE--HHH-----H---HHHHHTTHEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc---cCCcccccCCcceEEEeech-----h---hhhhccccEEE
Confidence 578999999999999999999999973 2223322 33321 1233332222 2 23356788888
Q ss_pred eeeeeccC-CcccCcceeecCCCceEEEEehhhhhhccc--CCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH-HHHHH
Q 006667 113 VPIYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE-EIIHQ 188 (636)
Q Consensus 113 iPvYDf~t-~~R~~~eti~v~~~dVIIVEGiyaL~~eLR--dl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE-eVl~q 188 (636)
+-.|+-.. +.....-.-......++|++.-......|+ ...-+.|||.++....+.+|+.+ +|.+.+ ++..+
T Consensus 71 ~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~----r~~~~~~~i~~r 146 (183)
T PF00625_consen 71 YGEYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRR----RGDESEEEIEER 146 (183)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHT----TTHCHHHHHHHH
T ss_pred EeeecchhhhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhc----cccccHHHHHHH
Confidence 87765221 111000000123445555543322222222 44457899999988777777643 565443 34333
Q ss_pred HHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 189 ISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 189 yl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
.. ...-.+..+ .. .|.+|.|+
T Consensus 147 ~~-~~~~~~~~~----~~-fd~vi~n~ 167 (183)
T PF00625_consen 147 LE-RAEKEFEHY----NE-FDYVIVND 167 (183)
T ss_dssp HH-HHHHHHGGG----GG-SSEEEECS
T ss_pred HH-HHHHHHhHh----hc-CCEEEECc
Confidence 32 222222211 11 89999864
No 82
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.46 E-value=2.9e-07 Score=86.40 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=32.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
...|.|.|++||||||+|+.|++.+ +..+++.|.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l-~~~~~d~d~~~ 39 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL-GYDFIDTDHLI 39 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEChHHH
Confidence 4589999999999999999999999 48889999864
No 83
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.44 E-value=5.5e-08 Score=86.42 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=57.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC-c-c--cccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeecc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-S-R--IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 119 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~-~-r--~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~ 119 (636)
|+|+|++||||||+|+.|++.++ . +..|.+... . . .....++.-..++.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-D--IIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR--------- 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-H--HHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH---------
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-c--HHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc---------
Confidence 78999999999999999999961 1 111111100 0 0 00011122234555554444443332100
Q ss_pred CCcccCcceeecCCCceEEEEehhhhhhcccCCccEE-EEEeCChhhHHHHHHhh
Q 006667 120 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR-VSVTGGVHFDLVKRVFR 173 (636)
Q Consensus 120 t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLK-IFVDad~D~RL~RRI~R 173 (636)
.......+|++|++.... .....+.. |||++|.+++..|...|
T Consensus 69 ----------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R 112 (129)
T PF13238_consen 69 ----------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKR 112 (129)
T ss_dssp ----------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCT
T ss_pred ----------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhC
Confidence 123456789999987652 22233334 99999998876555544
No 84
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.43 E-value=7.7e-07 Score=105.41 Aligned_cols=77 Identities=9% Similarity=0.021 Sum_probs=63.1
Q ss_pred eEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 136 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 136 VIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
-+|+||--+.. -+.+-.|+|||++++.+.|-.||...... ..+.+++++....+.+-...+-+.|.+...|.|+..+
T Consensus 191 ~~V~eGRDigT-vVfPdA~~KifL~As~e~RA~RR~~e~~~--~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDt 267 (863)
T PRK12269 191 RVVCEGRDLTT-VVFVDADLKCYLDASIEARVARRWAQGTS--RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDT 267 (863)
T ss_pred CEEEECCCCcc-EECCCCCEEEEEECCHHHHHHHHHHhhhc--cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEEC
Confidence 48889988763 56788999999999999999988766442 3688999999988877777788899998889988643
No 85
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.39 E-value=2.8e-06 Score=82.97 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=77.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcc--cccHHHHHHHHHhhhCCCceeeeee-
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPR--LTDYDTLLENIRGLKEGKAVQVPIY- 116 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~--afD~dlL~~~L~~Lk~Gk~I~iPvY- 116 (636)
+..+|+|.|+|||||||+++.|+..++. ..+....-.+.+.. +..+..+ ..+.+.+... +..|..+..-.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~-~~~~~~~~tr~p~~--ge~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPN-LQLSVSATTRAPRP--GEVDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCcc-ceeccCccccCCCC--CCcCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 4578999999999999999999998862 22222111111111 1111000 1233333332 234444333222
Q ss_pred eccCCccc-CcceeecCCCceEEEEehhhhhhcccCCc-c-EEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcC
Q 006667 117 DFKSSSRI-GYRTLEVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 193 (636)
Q Consensus 117 Df~t~~R~-~~eti~v~~~dVIIVEGiyaL~~eLRdl~-D-LKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~V 193 (636)
+..-+... .-+. ......++|++.-......+++.+ | +.||+.++....+.+|+. .||.+.++.+.++....
T Consensus 78 ~~~y~~~~~~i~~-~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~----~R~~~~~~~i~~rl~~~ 152 (205)
T PRK00300 78 GNYYGTPRSPVEE-ALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLR----GRGTDSEEVIARRLAKA 152 (205)
T ss_pred CccccCcHHHHHH-HHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHH----hcCCCCHHHHHHHHHHH
Confidence 11111000 0000 112234566544332222333333 3 678887766666666654 45655555566665544
Q ss_pred CcchhhhccCCcCCccEEEeCC
Q 006667 194 YPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 194 rP~~ekfIePtk~~ADIIIpN~ 215 (636)
.... ++ ...+|.+|.|+
T Consensus 153 ~~~~----~~-~~~~d~vi~n~ 169 (205)
T PRK00300 153 REEI----AH-ASEYDYVIVND 169 (205)
T ss_pred HHHH----Hh-HHhCCEEEECC
Confidence 3322 23 35689999754
No 86
>PRK14530 adenylate kinase; Provisional
Probab=98.37 E-value=9.4e-07 Score=87.81 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=32.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+.|+|.|++||||||+|+.|++.+ ++..|+++++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~-~~~~i~~g~~lr 39 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF-GVEHVTTGDALR 39 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEeccHHHH
Confidence 468999999999999999999999 588999998743
No 87
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.31 E-value=6.5e-06 Score=76.54 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=31.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
||.|+|++||||||+|+.|++.+ ++.+++.|.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-~~~~i~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-GAPFIDGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-CCEEEeCccccc
Confidence 57899999999999999999998 588999999864
No 88
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.29 E-value=2e-06 Score=83.24 Aligned_cols=139 Identities=20% Similarity=0.266 Sum_probs=76.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccC--CCCCcccccHHHH-HHHHHhhhCCCceeeeeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDG--NFDDPRLTDYDTL-LENIRGLKEGKAVQVPIYD 117 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dg--nfD~P~afD~dlL-~~~L~~Lk~Gk~I~iPvYD 117 (636)
...|+|.|++||||||+++.|++.+ +..+++.|.........+. -|.....-.|-.. .+.+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~----------- 71 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELT----------- 71 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc-CCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHH-----------
Confidence 3468999999999999999999998 5889999975321100000 0000000000000 01111111
Q ss_pred ccCCcccCcceeecCCCceEEEEehhhh-hh---cccCCccEEEEEeCChhhHHHHHHhhhhhhc----CCCHHHHHHHH
Q 006667 118 FKSSSRIGYRTLEVPSSRIVIIEGIYAL-SE---KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV----GQEPEEIIHQI 189 (636)
Q Consensus 118 f~t~~R~~~eti~v~~~dVIIVEGiyaL-~~---eLRdl~DLKIFVDad~D~RL~RRI~RDi~eR----GrslEeVl~qy 189 (636)
....+||..|-.+. .+ .+....+..||+++|.+.++ +|+.++- .| +.+.++.+..+
T Consensus 72 --------------~~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~-~Ri~~~~-~rP~~~~~~~~~~~~~l 135 (172)
T PRK05057 72 --------------EKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQL-ARTQRDK-KRPLLQVDDPREVLEAL 135 (172)
T ss_pred --------------hCCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHH-HHHhCCC-CCCCCCCCCHHHHHHHH
Confidence 01123343333322 22 22234578999999999865 4555432 22 22344556666
Q ss_pred HhcCCcchhhhccCCcCCccEEEeC
Q 006667 190 SETVYPMYKAFIEPDLQTAHIKIIN 214 (636)
Q Consensus 190 l~~VrP~~ekfIePtk~~ADIIIpN 214 (636)
.....|.|. +.||++|..
T Consensus 136 ~~~R~~~Y~-------~~Ad~~idt 153 (172)
T PRK05057 136 ANERNPLYE-------EIADVTIRT 153 (172)
T ss_pred HHHHHHHHH-------hhCCEEEEC
Confidence 666677775 459999963
No 89
>PRK13949 shikimate kinase; Provisional
Probab=98.29 E-value=5.1e-07 Score=87.31 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=30.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
-|+|.|++||||||+++.|++.+ +...+++|.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-~~~~id~D~~i 36 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-GLSFIDLDFFI 36 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCCeecccHHH
Confidence 48899999999999999999999 58899999864
No 90
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.29 E-value=4.4e-06 Score=81.29 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
.+++|.||+|||||||++.|+..++ ..++..|.+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~-~~~~~~~~~ 36 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ-TQLLVAHRY 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC-CeEEEcCEE
Confidence 4789999999999999999998874 445555554
No 91
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.26 E-value=5.1e-06 Score=80.79 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=84.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC---cEEEEcccccCCccc--ccCCCCCcccccHHHHHHHHHhhhCCCceeeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS---IAVITMDNYNDSSRI--IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 115 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~---v~VIsmDdY~~~~r~--~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPv 115 (636)
.++|.|.|||||||+|+++.|.+.+|. ..+.++-.-.+.... .++.|-.. +.+ -..+.+|+.+++-.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~-----~ef---~~~i~~g~fve~~~ 73 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSR-----EEF---EDDIKSGLFLEWGE 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCH-----HHH---HHHHHcCCeEEEEE
Confidence 468999999999999999999998762 112222111111100 12333221 222 23456677787766
Q ss_pred eeccCC-cccCcceeecCCCceEEEEehhhhhhcccC-Ccc-EEEEEeCChhhHHHHHHhhhhhhcCCC-HHHHHHHHHh
Q 006667 116 YDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRP-LID-LRVSVTGGVHFDLVKRVFRDIQRVGQE-PEEIIHQISE 191 (636)
Q Consensus 116 YDf~t~-~R~~~eti~v~~~dVIIVEGiyaL~~eLRd-l~D-LKIFVDad~D~RL~RRI~RDi~eRGrs-lEeVl~qyl~ 191 (636)
|.-... .....-.-.....+++|+++-.-....++. ..+ +.|||.++....|.+|+.. ||.+ .+++-++..
T Consensus 74 ~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~----R~~~~~~~i~~rl~- 148 (184)
T smart00072 74 YSGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRG----RGTETAERIQKRLA- 148 (184)
T ss_pred EcCcCcccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHh----cCCCCHHHHHHHHH-
Confidence 553221 111000001234578888876554444442 223 8999998877777777753 5554 444444443
Q ss_pred cCCcchhhhccCCcCCccEEEeCC
Q 006667 192 TVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 192 ~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
...-... . ....|.+|.|+
T Consensus 149 ~a~~~~~---~--~~~fd~~I~n~ 167 (184)
T smart00072 149 AAQKEAQ---E--YHLFDYVIVND 167 (184)
T ss_pred HHHHHHh---h--hccCCEEEECc
Confidence 3221111 1 25689999865
No 92
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.25 E-value=9.9e-06 Score=76.47 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|+|.|++||||||+|+.|+..++ ..+++.|+|.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-AKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-CeEEeCcccc
Confidence 46899999999999999999995 7889999985
No 93
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.23 E-value=5.7e-06 Score=79.55 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|+|.|++||||||+|+.|++.+ ++.+|++|+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-~~~~i~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-GLPHISTGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCeEEECcHHH
Confidence 7899999999999999999999 58999999864
No 94
>PRK00625 shikimate kinase; Provisional
Probab=98.21 E-value=1.7e-06 Score=84.50 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.|.|.|.+||||||+++.|++.+ +...|++|.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-~~~~id~D~~I 35 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-SLPFFDTDDLI 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCEEEhhHHH
Confidence 48899999999999999999999 58899999864
No 95
>PRK14528 adenylate kinase; Provisional
Probab=98.20 E-value=4.4e-06 Score=81.77 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=31.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
+.|.|.|++||||||+|+.|++.+ ++.++++|+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~-~~~~is~~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL-SIPQISTGDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCeeeCCHHH
Confidence 458899999999999999999999 58899999864
No 96
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.20 E-value=1.3e-06 Score=79.73 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=31.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
||.++|++||||||+|+.|++.++ ..+|+.|.++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-~~~i~~D~~~~ 35 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-AVVISQDEIRR 35 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-EEEEEHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-CEEEeHHHHHH
Confidence 688999999999999999999995 88999999753
No 97
>PRK14531 adenylate kinase; Provisional
Probab=98.18 E-value=7.4e-06 Score=79.61 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
..|.|.|++||||||+|+.|++.+ ++..|++++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~-g~~~is~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH-GLRHLSTGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCeEecccHH
Confidence 358899999999999999999999 58899998764
No 98
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.18 E-value=2.8e-06 Score=85.09 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=40.6
Q ss_pred CCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH-HHHHHHHhcCCcchhhhccC-CcCCccEEEeCC
Q 006667 151 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE-EIIHQISETVYPMYKAFIEP-DLQTAHIKIINK 215 (636)
Q Consensus 151 dl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE-eVl~qyl~~VrP~~ekfIeP-tk~~ADIIIpN~ 215 (636)
...|+.||+++|.+.++.| +. .||+..+ .+-..|++.+.-.|+++..| ....+++++.+.
T Consensus 141 ~~Pd~~i~l~~~~~~~~~R-i~----~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~ 202 (219)
T cd02030 141 LPPHLVIYLDVPVPEVQKR-IK----KRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW 202 (219)
T ss_pred CCCCEEEEEeCCHHHHHHH-HH----HcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC
Confidence 3469999999999886654 32 3454333 23456777778888887665 345688888754
No 99
>PRK13946 shikimate kinase; Provisional
Probab=98.18 E-value=3.1e-06 Score=82.43 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
..+.|++.|.+||||||+++.|++.| +..+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L-g~~~id~D~~ 44 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML-GLPFLDADTE 44 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc-CCCeECcCHH
Confidence 34679999999999999999999999 5888988864
No 100
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.17 E-value=3.2e-06 Score=80.43 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=30.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
+.|+|.|.+||||||+|+.|++.+ +..+++.|.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l-g~~~~d~D~~~ 37 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL-GYRFVDTDQWL 37 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEccHHH
Confidence 357889999999999999999999 47899999864
No 101
>PRK14527 adenylate kinase; Provisional
Probab=98.15 E-value=6.1e-06 Score=80.46 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=31.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
..+|.|.|++||||||+|+.|++.+ ++..+++|+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~-~~~~is~gd~~ 41 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL-GLKKLSTGDIL 41 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCCCCCccHHH
Confidence 4689999999999999999999999 47888888753
No 102
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.13 E-value=4.8e-06 Score=76.98 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|.|.|++||||||+|+.|++.+ +...++.|.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l-~~~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-GLPFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-CCCEEEchHHH
Confidence 6889999999999999999999 57899999874
No 103
>PRK13808 adenylate kinase; Provisional
Probab=98.12 E-value=7.5e-06 Score=87.88 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=29.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|.|.||+||||||+|..|++.| ++..|++++..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y-gl~~is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY-GIVQLSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-CCceecccHHH
Confidence 7789999999999999999999 58899998854
No 104
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.11 E-value=6.3e-06 Score=79.87 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=40.7
Q ss_pred CCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH-HHHHHHhcCCcchhhhccC-CcCCccEEEeC
Q 006667 151 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE-IIHQISETVYPMYKAFIEP-DLQTAHIKIIN 214 (636)
Q Consensus 151 dl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe-Vl~qyl~~VrP~~ekfIeP-tk~~ADIIIpN 214 (636)
...|+.||++++.++++.| + .+||+..+. .-..|...+...|+.++.+ .+..+.+++.+
T Consensus 123 ~~pd~~i~l~~~~~~~~~R-i----~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid 183 (193)
T cd01673 123 LPPDLVIYLDASPETCLKR-I----KKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIID 183 (193)
T ss_pred CCCCEEEEEeCCHHHHHHH-H----HhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 3689999999999998544 3 245665443 2246778888899998876 23456776654
No 105
>PRK02496 adk adenylate kinase; Provisional
Probab=98.11 E-value=1.6e-05 Score=76.77 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
-|+|.|++||||||+|+.|++.+ ++..+++|+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~-~~~~i~~~~~~ 36 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL-HIPHISTGDIL 36 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEEhHHHH
Confidence 47889999999999999999999 48899998753
No 106
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.10 E-value=4.1e-07 Score=91.71 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=40.6
Q ss_pred CCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH-HHH---HHHHhcCCcchhhhccCCcCCccEEE
Q 006667 151 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE-EII---HQISETVYPMYKAFIEPDLQTAHIKI 212 (636)
Q Consensus 151 dl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE-eVl---~qyl~~VrP~~ekfIePtk~~ADIII 212 (636)
...|+.||+|++.++ +.+|| ..|||+.| ... ..|.+.+.-.|..|++-.-..-++.|
T Consensus 125 ~~PdllIyLd~~~e~-~l~RI----~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i 185 (216)
T COG1428 125 GRPDLLIYLDASLET-LLRRI----AKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGI 185 (216)
T ss_pred CCCCEEEEEeCCHHH-HHHHH----HHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeee
Confidence 378999999999998 44444 55799887 222 34777777788888876655556666
No 107
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.07 E-value=2e-05 Score=77.55 Aligned_cols=111 Identities=22% Similarity=0.332 Sum_probs=76.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCC---cccccHHHHHHHHHhhhCCCceeeeeeecc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD---PRLTDYDTLLENIRGLKEGKAVQVPIYDFK 119 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~---P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~ 119 (636)
+|+|+|-+|.||||+|+.|. .+ +..++++-+|....... ..+|. --.+|.+.+...+..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l-g~~~i~l~el~~e~~~~-~~~de~r~s~~vD~d~~~~~le~~~------------- 65 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL-GYKVIELNELAKENGLY-TEYDELRKSVIVDVDKLRKRLEELL------------- 65 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh-CCceeeHHHHHHhcCCe-eccCCccceEEeeHHHHHHHHHHHh-------------
Confidence 68999999999999999999 66 57788888774322110 01111 12367777777766432
Q ss_pred CCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHH
Q 006667 120 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 190 (636)
Q Consensus 120 t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl 190 (636)
...-.|+||.++- +.+.+|+.|-+.+++.. |..|+ +.||++++.+.....
T Consensus 66 -------------~~~~~Ivd~H~~h---l~~~~dlVvVLR~~p~~-L~~RL----k~RGy~~eKI~ENve 115 (180)
T COG1936 66 -------------REGSGIVDSHLSH---LLPDCDLVVVLRADPEV-LYERL----KGRGYSEEKILENVE 115 (180)
T ss_pred -------------ccCCeEeechhhh---cCCCCCEEEEEcCCHHH-HHHHH----HHcCCCHHHHHHHHH
Confidence 1234677888764 34488999999999976 55555 568999998776543
No 108
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.05 E-value=1.5e-05 Score=78.91 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=30.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|+|.|++||||||+|+.|++.+ ++.+|++++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-g~~~is~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-GLPHISTGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCCeeehhHHH
Confidence 7889999999999999999999 59999998864
No 109
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=98.03 E-value=1.8e-05 Score=75.49 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=69.6
Q ss_pred eeEecCCCCCcccccceEEeeecCCeEEEEEeeeecCCCcccccceeEEEeeechhhhhhcCCeEEEEEEeeeeeeee-C
Q 006667 257 DIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYD-D 335 (636)
Q Consensus 257 DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v~~~~gL~~LGy~~aa~V~R~re~y~~-~ 335 (636)
.-|+.. +.++|+|..++.+.||||++. . +.|.|+|..+...+.-.-+.+..+..|.|.|.+|.. +
T Consensus 26 q~Yl~~--------~~~vRvR~~~~~~~lT~K~~~----~--~~R~E~E~~I~~~~~~~ll~~~~~~~I~K~R~~~~~~~ 91 (146)
T cd07761 26 QGYLSI--------NPEVRIRSKGEKYILTVKSGG----G--LVREEIEIEIDKKEFEHLLEKTEGNLIEKTRYLIPLEG 91 (146)
T ss_pred EEeccC--------CcEEEEEEECCEEEEEEEcCC----C--cceEEEEEeCCHHHHHHHHHhCCCCeEEEEEEEEEeCC
Confidence 567754 579999999999999999985 3 578999998854333222237888899999999999 9
Q ss_pred CEEEEeecccccCc--ceEEEeccc
Q 006667 336 RVCVKTDWLEQLNR--KYVQVQGRD 358 (636)
Q Consensus 336 ~~~i~lD~ve~Lg~--~FveIeg~~ 358 (636)
+.++++|.++|++. .|+|||-.+
T Consensus 92 ~~~~~vD~~~g~~~gL~~~EvE~~s 116 (146)
T cd07761 92 GLLAELDVFEGRLTGLVYAEVEFPS 116 (146)
T ss_pred CcEEEEEEEcCCCCCeEEEEEEcCC
Confidence 99999999999874 377777443
No 110
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.03 E-value=1.1e-05 Score=77.51 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=31.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC-cEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS-IAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~-v~VIsmDdY~ 77 (636)
.++|.++|++||||||+|+.|++.++. ...++.|+|+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 468999999999999999999999852 3456888874
No 111
>PRK14532 adenylate kinase; Provisional
Probab=98.02 E-value=3.7e-05 Score=74.39 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=30.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
|.|.|++||||||+|+.|++.+ ++..|++|+..+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~-g~~~is~~d~lr 36 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER-GMVQLSTGDMLR 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCeEEeCcHHHH
Confidence 7889999999999999999999 589999988643
No 112
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.98 E-value=1.7e-05 Score=78.07 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
-+..+|+|+|.+||||||+|+.|+..+. ++.+++.|++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 3456888999999999999999999763 35667767664
No 113
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.98 E-value=1.9e-05 Score=78.53 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=30.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.|+|.|++||||||+|+.|++.+ ++..|++++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-~~~~is~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-GIPHISTGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEECCccH
Confidence 48899999999999999999999 58999998754
No 114
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.97 E-value=1.6e-05 Score=80.71 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=27.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
+|.++|.+||||||+|+.|++.++ .+.+++.|.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 588999999999999999999873 3556666654
No 115
>PRK13947 shikimate kinase; Provisional
Probab=97.96 E-value=3.1e-05 Score=73.40 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=30.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
-|.|.|++||||||+|+.|++.| +..+++.|.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l-g~~~id~d~~~ 36 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL-SFGFIDTDKEI 36 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-CCCEEECchhh
Confidence 48899999999999999999999 48899999864
No 116
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.95 E-value=7.3e-05 Score=72.35 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=24.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|+|.|+.||||||+|+.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999985
No 117
>PRK13948 shikimate kinase; Provisional
Probab=97.93 E-value=2.9e-05 Score=76.63 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=31.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
...|++.|.+||||||+++.|++.++ ..+|++|.+.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg-~~~iD~D~~i 45 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALM-LHFIDTDRYI 45 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC-CCEEECCHHH
Confidence 46888999999999999999999994 7788999764
No 118
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.92 E-value=3.9e-05 Score=79.37 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=32.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
++|.+.|++||||||+|+.|++.+++...|+.|.+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHH
Confidence 589999999999999999999999668899999974
No 119
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.88 E-value=1.3e-05 Score=78.78 Aligned_cols=141 Identities=21% Similarity=0.294 Sum_probs=76.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCc--c-cccCCCCCcccccHHHHH-HHHHhhhCCCceeeeeeec
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--R-IIDGNFDDPRLTDYDTLL-ENIRGLKEGKAVQVPIYDF 118 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~--r-~~dgnfD~P~afD~dlL~-~~L~~Lk~Gk~I~iPvYDf 118 (636)
-|.+.|..||||||+.+.|++.| +...+++|.+.... . ..+ -|+.-..-.|-.+. +.|..+....
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie~~~g~sI~e-IF~~~GE~~FR~~E~~vl~~l~~~~--------- 72 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIEKRTGMSIAE-IFEEEGEEGFRRLETEVLKELLEED--------- 72 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc-CCCcccchHHHHHHHCcCHHH-HHHHHhHHHHHHHHHHHHHHHhhcC---------
Confidence 47788999999999999999999 58889998863211 0 000 01000000111111 1233332110
Q ss_pred cCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhh---cCCCHHHHHHHHHhcCCc
Q 006667 119 KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---VGQEPEEIIHQISETVYP 195 (636)
Q Consensus 119 ~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~e---RGrslEeVl~qyl~~VrP 195 (636)
..+......+|+-|....+ |.+. -..||+++|.++ +.+|+.+|-.+ ...++.+.+....+...|
T Consensus 73 --------~~ViaTGGG~v~~~enr~~---l~~~-g~vv~L~~~~e~-l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~ 139 (172)
T COG0703 73 --------NAVIATGGGAVLSEENRNL---LKKR-GIVVYLDAPFET-LYERLQRDRKRPLLQTEDPREELEELLEERQP 139 (172)
T ss_pred --------CeEEECCCccccCHHHHHH---HHhC-CeEEEEeCCHHH-HHHHhccccCCCcccCCChHHHHHHHHHHHHH
Confidence 0011112222222222222 1222 289999999998 67788755322 233554556666667678
Q ss_pred chhhhccCCcCCccEEEeC
Q 006667 196 MYKAFIEPDLQTAHIKIIN 214 (636)
Q Consensus 196 ~~ekfIePtk~~ADIIIpN 214 (636)
.|+ +.||++++.
T Consensus 140 ~Y~-------e~a~~~~~~ 151 (172)
T COG0703 140 LYR-------EVADFIIDT 151 (172)
T ss_pred HHH-------HhCcEEecC
Confidence 886 459999963
No 120
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.88 E-value=2.2e-05 Score=75.27 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
..+|+|.|.+||||||+|+.|+..+. ++.+++.|.+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 45899999999999999999999873 36678888753
No 121
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.84 E-value=0.00012 Score=77.83 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
.++|+|+||+||||||+|..|++.++ +.+|+.|++
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~-~~iis~Ds~ 38 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLN-GEIISADSM 38 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCC-CcEEecccc
Confidence 46899999999999999999999994 889999993
No 122
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.82 E-value=0.00013 Score=70.67 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=29.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC--C--cEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP--S--IAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~--~--v~VIsmDdY~ 77 (636)
..+|.|+|++||||||+|+.|...++ + +.+++.|.+.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 45889999999999999999999874 2 4566767654
No 123
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.81 E-value=3.9e-05 Score=81.10 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=33.2
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
+-+...|+++|.+||||||+++.|++.+ ++.++++|.+.
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~L-g~~~id~D~~i 168 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARL-GVPFVELNREI 168 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHc-CCCEEeHHHHH
Confidence 3456689999999999999999999999 47788888653
No 124
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.80 E-value=4e-05 Score=73.12 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+|+|.|+.||||||+++.|++.++
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999884
No 125
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.80 E-value=2.6e-05 Score=75.57 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=31.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
..+|-|+|.+||||||+|+.|.+.|. .+.+|+.|.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 45899999999999999999999873 578888887653
No 126
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.79 E-value=0.00024 Score=70.65 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.3
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
|-..++|.|+||||||||||++.|.+..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 4457899999999999999999998753
No 127
>PRK12338 hypothetical protein; Provisional
Probab=97.79 E-value=6.6e-05 Score=80.25 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=29.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEE-Eccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVI-TMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VI-smDdY~ 77 (636)
+.+|+|+|+|||||||+|+.|++.++ +..+ +.|.+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~-~~~~~~tD~~r 40 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN-IKHLIETDFIR 40 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC-CeEEccChHHH
Confidence 35899999999999999999999995 5555 555443
No 128
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.75 E-value=0.00017 Score=69.88 Aligned_cols=110 Identities=20% Similarity=0.287 Sum_probs=75.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccc---cCCCCCcccccHHHHHHHHHhhhCCCceeeeeeecc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII---DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 119 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~---dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~ 119 (636)
-|.|+|-+|.||||+|..|++.+ +...|++.+|.+..+.. +-.|+.| -+|-+.+.+.|..+..+
T Consensus 9 NILvtGTPG~GKstl~~~lae~~-~~~~i~isd~vkEn~l~~gyDE~y~c~-i~DEdkv~D~Le~~m~~----------- 75 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT-GLEYIEISDLVKENNLYEGYDEEYKCH-ILDEDKVLDELEPLMIE----------- 75 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh-CCceEehhhHHhhhcchhcccccccCc-cccHHHHHHHHHHHHhc-----------
Confidence 47999999999999999999998 58899999886543321 1133333 36888888888765432
Q ss_pred CCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHH
Q 006667 120 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 186 (636)
Q Consensus 120 t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl 186 (636)
...||=..|+-.|-+ ..+|+.+.+.+|... |..|+. .||++...+-
T Consensus 76 -------------Gg~IVDyHgCd~Fpe---rwfdlVvVLr~~~s~-LY~RL~----sRgY~e~Ki~ 121 (176)
T KOG3347|consen 76 -------------GGNIVDYHGCDFFPE---RWFDLVVVLRTPNSV-LYDRLK----SRGYSEKKIK 121 (176)
T ss_pred -------------CCcEEeecccCccch---hheeEEEEEecCchH-HHHHHH----HcCCCHHHHh
Confidence 122333344444432 367999999999876 666664 6888875543
No 129
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.75 E-value=5.2e-05 Score=74.54 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=31.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS 79 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~ 79 (636)
.|.|-|+|||||||+|++|++.++ ++.|+++++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~~r~ 37 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILRA 37 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHHhHh
Confidence 478899999999999999999984 888998887654
No 130
>PLN02772 guanylate kinase
Probab=97.74 E-value=0.00015 Score=79.52 Aligned_cols=205 Identities=16% Similarity=0.170 Sum_probs=102.7
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCCC-c-EEEEcccccCCccc--c---cCCCCCcccccHHHHHHHHHhhhCCCc
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMPS-I-AVITMDNYNDSSRI--I---DGNFDDPRLTDYDTLLENIRGLKEGKA 110 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~~-v-~VIsmDdY~~~~r~--~---dgnfD~P~afD~dlL~~~L~~Lk~Gk~ 110 (636)
+...++|.|+||||+||+||.+.|.+.++. . ..++. -.+.++. . +|.|- +.+.+. ..+.+|+.
T Consensus 132 ~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vsh--TTR~pR~gE~dG~dY~Fv-----s~eeFe---~~i~~g~F 201 (398)
T PLN02772 132 GNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSH--TTRAPREMEKDGVHYHFT-----ERSVME---KEIKDGKF 201 (398)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccc--cCCCCcccccCCceEeeC-----CHHHHH---HHHHhCcc
Confidence 335679999999999999999999988752 1 12211 1233321 1 23332 222222 33456777
Q ss_pred eeeeeeeccC-CcccCcceeecCCCceEEE----EehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHH
Q 006667 111 VQVPIYDFKS-SSRIGYRTLEVPSSRIVII----EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 185 (636)
Q Consensus 111 I~iPvYDf~t-~~R~~~eti~v~~~dVIIV----EGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeV 185 (636)
+++-.|.-.. ++....-........++|+ +|...+.... +.-+.||+.++....|.+|+. .||.+.++.
T Consensus 202 lE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~--l~~v~IFI~PPSlEeLe~RL~----~RGteseE~ 275 (398)
T PLN02772 202 LEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASS--LEAIFIFICPPSMEELEKRLR----ARGTETEEQ 275 (398)
T ss_pred ceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc--CCeEEEEEeCCCHHHHHHHHH----hcCCCCHHH
Confidence 7775544221 1111100001233455663 4555554322 224778888877666777664 466644443
Q ss_pred HHHHHhcCCcchhhhccC--CcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcccccc-ccccee-eeEec
Q 006667 186 IHQISETVYPMYKAFIEP--DLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTE-TTEETY-DIYLL 261 (636)
Q Consensus 186 l~qyl~~VrP~~ekfIeP--tk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~~~~~-~~e~~~-DIYLl 261 (636)
+...+...... ++- .....|.+|.|+ +. +-..+.++++|.-.... ....+. .=.-+
T Consensus 276 I~kRL~~A~~E----i~~~~~~~~fD~vIvND-dL---------------e~A~~~L~~iL~~~~~~~~~~~~~~~~~~~ 335 (398)
T PLN02772 276 IQKRLRNAEAE----LEQGKSSGIFDHILYND-NL---------------EECYKNLKKLLGLDGLAAVNGVEAPEGINL 335 (398)
T ss_pred HHHHHHHHHHH----HhhccccCCCCEEEECC-CH---------------HHHHHHHHHHHhhcCccccccccccccccC
Confidence 33333332111 211 124679999876 33 23456667777543221 112122 22223
Q ss_pred CCCCCcccccceEEeee
Q 006667 262 PPGEDPDACQSYLRMRN 278 (636)
Q Consensus 262 pPt~df~~tdeaLRiR~ 278 (636)
|+.-....||+-+-+-.
T Consensus 336 ~~~~~~~~~~~~~~~~~ 352 (398)
T PLN02772 336 PKEHSVSKMDDKIIIQE 352 (398)
T ss_pred CcccceeecCCceEecc
Confidence 33445566766555554
No 131
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.74 E-value=0.00014 Score=70.53 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.++|+|.|++||||||+++.|++.++
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999873
No 132
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.73 E-value=0.00017 Score=73.66 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=31.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
|.|.|++||||||+|+.|++.+ ++.+|++|+..+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~-g~~~is~gdllr 42 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE-NLKHINMGNILR 42 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-CCcEEECChHHH
Confidence 8889999999999999999999 599999999754
No 133
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=97.64 E-value=0.00049 Score=68.83 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=78.3
Q ss_pred ccceeeeEecCCCCCcccccceEEeeecCCeEEEEEeeeecC-CCcccccceeEEEeeec-------------hhhhhhc
Q 006667 252 TEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTD-SPFIISPRITFEVSVRL-------------LGGLMAL 317 (636)
Q Consensus 252 ~e~~~DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d-~~fiikPR~efev~v~~-------------~~gL~~L 317 (636)
.....|+||--|..++...+-+||+|..++++.+|+|.|... ... +-|.|+|+.+.- ...+.++
T Consensus 32 ~~~l~~~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~~~g~--~~R~E~e~~l~~~~~~l~~~~~~~~~~~~~~l 109 (197)
T cd07756 32 TRRLHNTYFDTPDLALRRAGIALRVRREGGQWVQTLKTAGSVVGGL--HQRPEWEVPLPGPAPDLDLASILPDGELLEAL 109 (197)
T ss_pred eeeeeeeeeeCcChHHHhCCCEEEEEeeCCeEEEEEeeCCcCCCCc--ccceeEcccCCCCCcCcchhhcCCcccCHhhh
Confidence 344569999999999999999999999999999999988643 223 678888888721 1234555
Q ss_pred ----CCeEEEEEEeeeeeeeeC----CEEEEeec--ccccC--cceEEEe
Q 006667 318 ----GYTIATILKRSSHIFYDD----RVCVKTDW--LEQLN--RKYVQVQ 355 (636)
Q Consensus 318 ----Gy~~aa~V~R~re~y~~~----~~~i~lD~--ve~Lg--~~FveIe 355 (636)
++.++..+...|+.|... .+.|++|. |..=+ .++-|||
T Consensus 110 ~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiE 159 (197)
T cd07756 110 AALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIE 159 (197)
T ss_pred hccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEE
Confidence 599999999999999874 49999999 44322 3466666
No 134
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.62 E-value=7.1e-05 Score=70.85 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=28.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+|.|+|.+||||||+|+.|+..+. .+.+++.|.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 478999999999999999999872 24556666654
No 135
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00027 Score=70.15 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
-+..+|=.+|.|||||||+|.+|.+.|- .+.+++-|+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 3445788899999999999999999863 4677777765
No 136
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.59 E-value=0.00026 Score=73.99 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=55.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeee
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 117 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYD 117 (636)
++|.|+|.+||||||+|+.|++.|. .+.+++-|++.-.. ..|.+ +-........+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~----~~y~~--~~~Ek~~R~~l~s~v~---------- 65 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDR----NDYAD--SKKEKEARGSLKSAVE---------- 65 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TT----SSS----GGGHHHHHHHHHHHHH----------
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccch----hhhhc--hhhhHHHHHHHHHHHH----------
Confidence 5899999999999999999999874 45667755544110 11221 2222223333321110
Q ss_pred ccCCcccCcceeecCCCceEEEEehhhhh----h-----cccCCccEEEEEeCChhhHHHHHHhhh
Q 006667 118 FKSSSRIGYRTLEVPSSRIVIIEGIYALS----E-----KLRPLIDLRVSVTGGVHFDLVKRVFRD 174 (636)
Q Consensus 118 f~t~~R~~~eti~v~~~dVIIVEGiyaL~----~-----eLRdl~DLKIFVDad~D~RL~RRI~RD 174 (636)
+ .+....+||+++..=+. + +-...--..||++++.+.|+.|-..|.
T Consensus 66 ---------r--~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 66 ---------R--ALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp ---------H--HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred ---------H--hhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 0 12344799999887332 1 112334478999999999988877665
No 137
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.58 E-value=0.00015 Score=78.12 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=30.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC-----CcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~-----~v~VIsmDdY~~ 78 (636)
+..++|.+||||||+++.|++.+. .+.+++.|+|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 357899999999999999998763 378999999874
No 138
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=97.57 E-value=0.0004 Score=66.93 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=73.5
Q ss_pred cceeeeEecCCCCCcccccceEEeeec--CCeEEEEEeeeecCCCcccccceeEEEeeech--------------hhhhh
Q 006667 253 EETYDIYLLPPGEDPDACQSYLRMRNR--DGKYNLMFEEWVTDSPFIISPRITFEVSVRLL--------------GGLMA 316 (636)
Q Consensus 253 e~~~DIYLlpPt~df~~tdeaLRiR~~--dg~~~Ltykgp~~d~~fiikPR~efev~v~~~--------------~gL~~ 316 (636)
..+.|+||-.|..+. .+..||+|.. ++.+.+|+|.|... +-|.|+++.+... ..+..
T Consensus 32 ~~~~~~YfDT~d~~l--~~~~lrlR~r~~~~~~~~TlK~~~~~-----~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (174)
T cd07374 32 VQLRAIYFDTPDLRL--ARAGLRLRRRTGGADAGWHLKLPGGI-----SRRTEVRAPLGDAAAVAPLLLAAALVLAVTRG 104 (174)
T ss_pred eeeeeeEecCccchh--hhCCcEEEEEcCCCccEEEEEccCCC-----CCceEEEeecCCccCCcccccchhheeeecCC
Confidence 345699999988743 4566777754 56999999998764 4577888877311 23566
Q ss_pred cCCeEEEEEEeeeeeeeeC-----CEEEEeecccc-------cCcceEEEe
Q 006667 317 LGYTIATILKRSSHIFYDD-----RVCVKTDWLEQ-------LNRKYVQVQ 355 (636)
Q Consensus 317 LGy~~aa~V~R~re~y~~~-----~~~i~lD~ve~-------Lg~~FveIe 355 (636)
+|+++++.+.+.|..|..+ .+.|++|.++. .+ +|||+|
T Consensus 105 ~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~-~e~E~E 154 (174)
T cd07374 105 LPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQ-YWREVE 154 (174)
T ss_pred CCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcce-EEEEEE
Confidence 8999999999999999876 59999999998 55 699999
No 139
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.56 E-value=0.00043 Score=69.15 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=28.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
..+|+|+|.+||||||+|+.|++.++-..+++.|-+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~ 38 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYL 38 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHH
Confidence 468999999999999999999999853345555543
No 140
>PRK14526 adenylate kinase; Provisional
Probab=97.53 E-value=0.00045 Score=69.63 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=29.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|+|.|++||||||+|+.|++.+ +...+++++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~-~~~~is~G~ll 35 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL-NYYHISTGDLF 35 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-CCceeecChHH
Confidence 6789999999999999999988 48889988863
No 141
>PLN02165 adenylate isopentenyltransferase
Probab=97.52 E-value=0.0001 Score=79.25 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=34.7
Q ss_pred EecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 36 IVPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 36 Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
+.+-+..+|+|.||+||||||||..|+..++ ..+|++|++
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~-~eIIsaDs~ 77 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFP-SEIINSDKM 77 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHcC-CceecCChh
Confidence 3444566999999999999999999999995 689999985
No 142
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00056 Score=72.65 Aligned_cols=150 Identities=23% Similarity=0.220 Sum_probs=86.0
Q ss_pred CCCCCCcchHHHHHHHHhhcCCCceEecCCCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc---ccCCc---
Q 006667 11 SPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN---YNDSS--- 80 (636)
Q Consensus 11 ~~~~~~~ll~~ql~~~~r~~~~~~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd---Y~~~~--- 80 (636)
|.+-+...+-.|+...-...+++.. +|||+|++|+||||+..+|...|- .|.||..|- |.-..
T Consensus 28 s~~~~h~~~a~~ll~~l~p~tG~a~-------viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 28 SRRPDHRALARELLRALYPRTGNAH-------VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred cCCchhhhHHHHHHHHHhhcCCCCc-------EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 3333333334444433333455544 455599999999999999999873 488999884 21111
Q ss_pred -cccc-CCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCCccc--C------c---ceeecCCCceEEEEehhhhhh
Q 006667 81 -RIID-GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRI--G------Y---RTLEVPSSRIVIIEGIYALSE 147 (636)
Q Consensus 81 -r~~d-gnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~R~--~------~---eti~v~~~dVIIVEGiyaL~~ 147 (636)
+..- ----+|+.| =....+|- + . ...+...-|+||||-+-+...
T Consensus 101 DRiRM~~~~~~~~vF-----------------------iRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQs 157 (323)
T COG1703 101 DRIRMQRLAVDPGVF-----------------------IRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQS 157 (323)
T ss_pred cHhhHHhhccCCCeE-----------------------EeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc
Confidence 0000 000022222 11111110 0 0 112235679999999999873
Q ss_pred --cccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCccEEEeCCCCCC
Q 006667 148 --KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 219 (636)
Q Consensus 148 --eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~ 219 (636)
.+.+++|+.++|-.|. .|-+...+-.-. .+-||+++.|++|+.
T Consensus 158 ev~I~~~aDt~~~v~~pg--------------~GD~~Q~iK~Gi---------------mEiaDi~vINKaD~~ 202 (323)
T COG1703 158 EVDIANMADTFLVVMIPG--------------AGDDLQGIKAGI---------------MEIADIIVINKADRK 202 (323)
T ss_pred hhHHhhhcceEEEEecCC--------------CCcHHHHHHhhh---------------hhhhheeeEeccChh
Confidence 6889999999998774 243332222222 367899999999864
No 143
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.50 E-value=0.0006 Score=66.59 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=31.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+..+++|.|++||||||+++.|...++ ...++-|+++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~~~i~gd~~~~ 39 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-AKFIDGDDLHP 39 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-CEEECCcccCC
Confidence 346899999999999999999999885 56777777654
No 144
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.48 E-value=0.00024 Score=74.68 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=24.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
-++|.+.|+.|||||+||++|++.++
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lg 96 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLG 96 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhC
Confidence 46999999999999999999999975
No 145
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00028 Score=70.25 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=69.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccc--------------cCCCCCcccccHHHHHHHHHhhh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII--------------DGNFDDPRLTDYDTLLENIRGLK 106 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~--------------dgnfD~P~afD~dlL~~~L~~Lk 106 (636)
.+||+|-||+||||-|.|.+|++.|+ .+.||+.+..+..... .|.. -|..+=.++|.+.+...
T Consensus 8 ~~IifVlGGPGsgKgTqC~kiv~ky~-ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~i-VP~ei~~~LL~~am~~~- 84 (195)
T KOG3079|consen 8 PPIIFVLGGPGSGKGTQCEKIVEKYG-FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDL-VPVEITLSLLEEAMRSS- 84 (195)
T ss_pred CCEEEEEcCCCCCcchHHHHHHHHcC-ceeecHHHHHHHHHccccChHHHHHHHHHHcCCc-CcHHHHHHHHHHHHHhc-
Confidence 56899999999999999999999996 8899999864322110 1111 12222222333222221
Q ss_pred CCCceeeeeeeccCCcccCcceeecCCCceEEEEehh-------hhhhcccCCccEEEEEeCChhhHHHHHHhhhhh
Q 006667 107 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIY-------ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 176 (636)
Q Consensus 107 ~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiy-------aL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~ 176 (636)
....-.+|+|.- .|...+....|+.+|+|++.|+++.|-+.|...
T Consensus 85 -------------------------~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 85 -------------------------GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred -------------------------CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 111225666642 122344446799999999999999998888765
No 146
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.47 E-value=0.00061 Score=71.93 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+.++|.|+|++||||||+++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~~ 29 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALEDL 29 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHc
Confidence 3568999999999999999999753
No 147
>PLN02199 shikimate kinase
Probab=97.45 E-value=0.00038 Score=73.94 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
+.+-|.+.|.+||||||+++.|++.+ +..+|++|.+.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~L-g~~fIDtD~lI 137 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVL-GYTFFDCDTLI 137 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-CCCEEehHHHH
Confidence 34578999999999999999999999 58899999863
No 148
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.40 E-value=0.00051 Score=78.74 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC-----cEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS-----IAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~-----v~VIsmDdY~ 77 (636)
..+|.|+|.+||||||+|+.|++.+.. +.+++.|...
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 348999999999999999999999852 5777777663
No 149
>PLN02840 tRNA dimethylallyltransferase
Probab=97.36 E-value=0.00014 Score=80.32 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
..+|+|.||+||||||+|..|++.++ ..+|+.|++
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~-~~iis~Ds~ 55 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLN-GEIISADSV 55 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCC-CCeEecccc
Confidence 45899999999999999999999995 789999985
No 150
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.35 E-value=0.00034 Score=79.56 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=32.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.+.|.+.|..||||||+++.|++.+ +...|++|.+.
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L-~~~fiD~D~~i 41 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMM-RLPFADADVEI 41 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHh-CCCEEEchHHH
Confidence 4568889999999999999999999 58899999874
No 151
>PLN02842 nucleotide kinase
Probab=97.33 E-value=0.0012 Score=74.59 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred EeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 46 EKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 46 IsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|.|++||||||+|+.|++.| ++..|++++..
T Consensus 2 I~G~PGSGKSTqa~~Lak~l-g~~hIs~gdLL 32 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKF-GLVHISTGDLL 32 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHh-CCCEEEccHHH
Confidence 78999999999999999999 58889888753
No 152
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.32 E-value=0.00018 Score=67.48 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.9
Q ss_pred EeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 46 EKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 46 IsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|-||+||||||+|+.|++.+ ++..|++.+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~-~~~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-GLVHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-TSEEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc-CcceechHHHH
Confidence 57999999999999999999 59999998864
No 153
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.31 E-value=0.00073 Score=71.44 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=30.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
+|+|.||+|||||+||..|++.++ ..+|+.|+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~-~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN-AEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC-CcEEEechh
Confidence 589999999999999999999995 789999994
No 154
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.30 E-value=0.0015 Score=69.52 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
.++|+|.||+|||||.||-.|++.. ..|||.|++
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~--~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGK--AEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC--CcEEeccHH
Confidence 3589999999999999999999994 589999994
No 155
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0026 Score=68.01 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
.++|+|.||+|||||-+|-.|++.++ ..|||.|+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~-~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLG-GEIISLDSM 37 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcC-CcEEecchh
Confidence 56899999999999999999999995 899999994
No 156
>PLN02674 adenylate kinase
Probab=97.18 E-value=0.0011 Score=68.60 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=31.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
..|.|.||+||||||+|+.|++.+ ++..|++++..+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~-~~~his~GdllR 67 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY-CLCHLATGDMLR 67 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-CCcEEchhHHHH
Confidence 357889999999999999999999 589999998643
No 157
>PHA00729 NTP-binding motif containing protein
Probab=97.18 E-value=0.0013 Score=67.46 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=57.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 121 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~ 121 (636)
.|+|+|++|+||||+|.+|+..+. .+..+..|.-...+ .. ..--+|.+.+...|....++.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~---~~---~~~fid~~~Ll~~L~~a~~~~------------ 80 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY---VQ---NSYFFELPDALEKIQDAIDND------------ 80 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc---CC---cEEEEEHHHHHHHHHHHHhcC------------
Confidence 578999999999999999999863 12223333110000 00 112367777777776544321
Q ss_pred cccCcceeecCCCceEEEEe---------hh--------hhhhcccCCccEEEEEeCChhhH
Q 006667 122 SRIGYRTLEVPSSRIVIIEG---------IY--------ALSEKLRPLIDLRVSVTGGVHFD 166 (636)
Q Consensus 122 ~R~~~eti~v~~~dVIIVEG---------iy--------aL~~eLRdl~DLKIFVDad~D~R 166 (636)
...+++|+|+ .+ .+.+.++..+++.+|..+..+..
T Consensus 81 ----------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL 132 (226)
T PHA00729 81 ----------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDL 132 (226)
T ss_pred ----------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHH
Confidence 0113555555 11 23356777889999998877753
No 158
>PRK13973 thymidylate kinase; Provisional
Probab=97.14 E-value=0.0022 Score=64.12 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=28.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmD 74 (636)
.++|+|.|+.||||||.++.|++.|. +..++.+.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57899999999999999999999984 35555553
No 159
>PLN02459 probable adenylate kinase
Probab=97.05 E-value=0.0016 Score=68.08 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=36.0
Q ss_pred CCCceEecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 31 SDRYEIVPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 31 ~~~~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+++-...+.+.+ |.|.|++||||||+|+.|++.+ ++..|++.+..+
T Consensus 20 ~~~~~~~~~~~~-ii~~G~PGsGK~T~a~~la~~~-~~~~is~gdllR 65 (261)
T PLN02459 20 CDRSLAKGRNVN-WVFLGCPGVGKGTYASRLSKLL-GVPHIATGDLVR 65 (261)
T ss_pred ccCCccccCccE-EEEECCCCCCHHHHHHHHHHHh-CCcEEeCcHHHH
Confidence 455556654444 5667999999999999999999 588999988643
No 160
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.04 E-value=0.0019 Score=74.73 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=33.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
+..+|.++|.+||||||+|+.|++.+. .+.+|+-|.++.
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 467999999999999999999999873 367888888864
No 161
>PRK07933 thymidylate kinase; Validated
Probab=97.02 E-value=0.0023 Score=64.36 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=22.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+|+|.|+.||||||+++.|++.|.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999985
No 162
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.00 E-value=0.0031 Score=59.04 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=57.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCC--cEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPS--IAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 120 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~--v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t 120 (636)
+|+|.|||||||||+++.|.+.++. ..+++...-...+...++ . +-..++.+.+.+ ...+|+.+++-.|....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g-~-~~~~v~~~~~~~---~~~~~~f~e~~~~~~~~ 75 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDG-V-DYHFVSKEEFER---LIENGEFLEWAEFHGNY 75 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCC-c-eeEEeCHHHHHH---HHHcCCeEEEEEEcCEE
Confidence 4789999999999999999998762 223333221111111111 0 001223333333 34456555544333221
Q ss_pred CcccCccee--ecCCCceEEEEehhhhhhccc-CCcc-EEEEEeCChh
Q 006667 121 SSRIGYRTL--EVPSSRIVIIEGIYALSEKLR-PLID-LRVSVTGGVH 164 (636)
Q Consensus 121 ~~R~~~eti--~v~~~dVIIVEGiyaL~~eLR-dl~D-LKIFVDad~D 164 (636)
..... ..+ ......++|++.-......++ ...+ ..|||.+|.+
T Consensus 76 yg~~~-~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~~~ 122 (137)
T cd00071 76 YGTSK-AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPPDY 122 (137)
T ss_pred ecCcH-HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECCCe
Confidence 10000 001 123456777766555443333 2345 5899999843
No 163
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.97 E-value=0.00089 Score=65.99 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=31.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC--CCcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM--PSIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L--~~v~VIsmDdY~~ 78 (636)
.+.++.++|++||||||++..+...+ +++.+|+.|.|..
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 46789999999999999999999998 5789999999854
No 164
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.0022 Score=64.92 Aligned_cols=153 Identities=25% Similarity=0.254 Sum_probs=77.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcccccCCc---cc----ccC--CCCCccc------ccHH-HHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS---RI----IDG--NFDDPRL------TDYD-TLLENI 102 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDdY~~~~---r~----~dg--nfD~P~a------fD~d-lL~~~L 102 (636)
...|+|-|.-||||||.++.|++.|. +..|+-+=.=...+ .. .+. .++ |.+ .|.. .+.+.+
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~-~~~e~lLfaadR~~h~~~~i 81 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLS-PKAEALLFAADRAQHLEEVI 81 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999985 22222111000011 00 111 111 111 1111 122333
Q ss_pred H-hhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccC---CccEEEEEeCChhhHHHHHHhhhhhhc
Q 006667 103 R-GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP---LIDLRVSVTGGVHFDLVKRVFRDIQRV 178 (636)
Q Consensus 103 ~-~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRd---l~DLKIFVDad~D~RL~RRI~RDi~eR 178 (636)
. .+..|..|-...|.+++-...+ ...-+-.+.+..++ ++.. ..|+.+|+|.|+++.+.|-..|.....
T Consensus 82 ~pal~~g~vVI~DRy~~Ss~AYQg-------~~~~~~~~~~~~l~-~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~ 153 (208)
T COG0125 82 KPALKEGKVVICDRYVDSSLAYQG-------GGRGLDLDWVLALN-EFAPGGLKPDLTLYLDVPPEVALERIRKRGELRD 153 (208)
T ss_pred HHhhcCCCEEEECCcccHHHHhhh-------hccCCCHHHHHHHH-HhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccc
Confidence 2 3556766666666655432111 00001112222222 2222 679999999999999877665543211
Q ss_pred CCCHHHHHHHHHhcCCcchhhhccCC
Q 006667 179 GQEPEEIIHQISETVYPMYKAFIEPD 204 (636)
Q Consensus 179 GrslEeVl~qyl~~VrP~~ekfIePt 204 (636)
. .|.....+.+.++-.|.......
T Consensus 154 r--~E~~~~~f~~kvr~~Y~~la~~~ 177 (208)
T COG0125 154 R--FEKEDDEFLEKVREGYLELAAKF 177 (208)
T ss_pred h--hhhHHHHHHHHHHHHHHHHHhhC
Confidence 1 11111246667777777666443
No 165
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.93 E-value=0.00094 Score=75.27 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.|+|.|.+||||||+++.|++.+ ++.++++|.+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~l-g~~~id~D~~i 35 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVL-DLQFIDMDEEI 35 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCeEEECcHHH
Confidence 37899999999999999999999 58999999874
No 166
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.93 E-value=0.00084 Score=71.44 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=32.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.+|+|+|++||||||+|.+|+..|+...+|+.|.+.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 378999999999999999999999644689999875
No 167
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.92 E-value=0.00067 Score=66.81 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=31.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCc-EEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSI-AVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v-~VIsmDdY~~ 78 (636)
+||.+.|+|.|||||+|+.|++.++.. ..+++|.|..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 689999999999999999999999843 6899999864
No 168
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.90 E-value=0.0029 Score=72.05 Aligned_cols=122 Identities=14% Similarity=0.148 Sum_probs=69.5
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHH-HHHHhhhCCCceeeee
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL-ENIRGLKEGKAVQVPI 115 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~-~~L~~Lk~Gk~I~iPv 115 (636)
.+-+..+|.++|.+||||||+|+.+.... +..+|+.|.+.. +..+. .....|.+|+++-
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~-g~~~vn~D~lg~----------------~~~~~~~a~~~L~~G~sVV--- 424 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPA-GYKHVNADTLGS----------------TQNCLTACERALDQGKRCA--- 424 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHc-CCeEECcHHHHH----------------HHHHHHHHHHHHhCCCcEE---
Confidence 34457899999999999999999999887 578999997521 12222 2334566777663
Q ss_pred eeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhc--CCCHHHHHHHHHhc
Q 006667 116 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQISET 192 (636)
Q Consensus 116 YDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eR--GrslEeVl~qyl~~ 192 (636)
+|.....+.. +. -...+..+.. .-=..+|+++|.++++.|-..|..... ..-++.++.+|...
T Consensus 425 IDaTn~~~~~-R~------------~~i~lAk~~g-v~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~ 489 (526)
T TIGR01663 425 IDNTNPDAAS-RA------------KFLQCARAAG-IPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKK 489 (526)
T ss_pred EECCCCCHHH-HH------------HHHHHHHHcC-CeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhh
Confidence 3444332211 00 0011111111 111357899999998766656643211 12235666666544
No 169
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0053 Score=59.63 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=30.0
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc
Q 006667 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR 81 (636)
Q Consensus 48 GgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r 81 (636)
|.+||||||++.+|++.+ ++..|.-|+||...+
T Consensus 2 GVsG~GKStvg~~lA~~l-g~~fidGDdlHp~aN 34 (161)
T COG3265 2 GVSGSGKSTVGSALAERL-GAKFIDGDDLHPPAN 34 (161)
T ss_pred CCCccCHHHHHHHHHHHc-CCceecccccCCHHH
Confidence 899999999999999999 599999999997654
No 170
>COG4639 Predicted kinase [General function prediction only]
Probab=96.85 E-value=0.0022 Score=62.59 Aligned_cols=124 Identities=22% Similarity=0.266 Sum_probs=69.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCc-----cc-ccCCCCCcccccHHHHHHHHHh-hhCCCceee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RI-IDGNFDDPRLTDYDTLLENIRG-LKEGKAVQV 113 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~-----r~-~dgnfD~P~afD~dlL~~~L~~-Lk~Gk~I~i 113 (636)
..++++.|.+||||||+|+.. ++.+.+|++|++...- .. ..+|+. .-|+.+.+.+.. +.+|+..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n---~~~~~~lsld~~r~~lg~~~~~e~sqk~~~----~~~~~l~~~l~qrl~~Gk~t-- 72 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN---FLQNYVLSLDDLRLLLGVSASKENSQKNDE----LVWDILYKQLEQRLRRGKFT-- 72 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh---CCCcceecHHHHHHHhhhchhhhhccccHH----HHHHHHHHHHHHHHHcCCeE--
Confidence 358999999999999999874 4457899999985411 11 112211 124556666554 5567544
Q ss_pred eeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhc
Q 006667 114 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 192 (636)
Q Consensus 114 PvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~ 192 (636)
++|...-.|...+. |.-....-...+..|++|+|...|+.|--.| +| +-+++|+.+....
T Consensus 73 -iidAtn~rr~~r~~--------------l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~---~R-qv~~~VI~r~~r~ 132 (168)
T COG4639 73 -IIDATNLRREDRRK--------------LIDLAKAYGYKIYAIVFDTPLELCLARNKLR---ER-QVPEEVIPRMLRE 132 (168)
T ss_pred -EEEcccCCHHHHHH--------------HHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc---ch-hCCHHHHHHHHHH
Confidence 34444322211010 0000111235567799999999998764322 22 3456666555433
No 171
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0014 Score=66.75 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=26.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMD 74 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmD 74 (636)
++|.++|.+||||||+|+.|++.|. ...+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 5788999999999999999999985 23445444
No 172
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.79 E-value=0.001 Score=66.35 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=33.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
+++|++.||+|+||||.+.+|+..+. .+.+|++|.|+-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 46899999999999999999998863 588999999874
No 173
>PRK13974 thymidylate kinase; Provisional
Probab=96.78 E-value=0.0078 Score=60.14 Aligned_cols=46 Identities=17% Similarity=0.031 Sum_probs=32.6
Q ss_pred CccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhhc
Q 006667 152 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 201 (636)
Q Consensus 152 l~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekfI 201 (636)
..|+.||+|+|.++.+.|...|. ....+.-...|...+.|.|..|.
T Consensus 134 ~pd~~i~ld~~~~~~~~R~~~R~----dD~~e~~~~~y~~~v~~~y~~y~ 179 (212)
T PRK13974 134 SPDLTFFLEISVEESIRRRKNRK----PDRIEAEGIEFLERVAEGFALIA 179 (212)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcc----cCchhhhhHHHHHHHHHHHHHHH
Confidence 47999999999999876654431 11234445578888899998775
No 174
>PLN02748 tRNA dimethylallyltransferase
Probab=96.73 E-value=0.0015 Score=73.40 Aligned_cols=36 Identities=22% Similarity=0.545 Sum_probs=32.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
..++|+|.||+||||||||..|++.|+ +.+|+.|++
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~-~eii~~Dsm 56 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFP-VEIINADSM 56 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-eeEEcCchh
Confidence 355899999999999999999999994 889999983
No 175
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.72 E-value=0.001 Score=65.04 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=34.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR 81 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r 81 (636)
+|.|-|++||||||++++|.+.| ++..+.-|+||...+
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l-~~~F~dgDd~Hp~~N 51 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEEL-GLKFIDGDDLHPPAN 51 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHh-CCcccccccCCCHHH
Confidence 78889999999999999999999 589999999997654
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.68 E-value=0.002 Score=55.81 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=28.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC----cEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS----IAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~----v~VIsmDdY 76 (636)
...++|.||+||||||+++.|+..+.. +..++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 357899999999999999999999862 445555543
No 177
>PRK14529 adenylate kinase; Provisional
Probab=96.66 E-value=0.0036 Score=63.93 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=28.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
|.|.|++||||||+|+.|++.++ +..|+..+..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~-~~~is~gdllr 36 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD-LAHIESGAIFR 36 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-CCCcccchhhh
Confidence 77899999999999999999994 77777776543
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.66 E-value=0.0023 Score=56.93 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=26.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
|.|.||+|+||||+|+.+++.+ +..++.+|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhc-ccccccccc
Confidence 6789999999999999999999 466666664
No 179
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=96.55 E-value=0.0036 Score=64.02 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=71.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCcc--cccCCCCCcccccHHHHHHHH-----Hhh---hC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR--IIDGNFDDPRLTDYDTLLENI-----RGL---KE 107 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r--~~dgnfD~P~afD~dlL~~~L-----~~L---k~ 107 (636)
-+|...|-+|.|||++|++|...|. .+.+++..+|.+... ..+..|.+|+.-+...+.+.+ .++ ..
T Consensus 13 l~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~l~ 92 (222)
T PF01591_consen 13 LVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIEWLQ 92 (222)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999999999875 488999999864311 112234445544433333322 221 11
Q ss_pred CCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeC--ChhhHHHHHHhhhhh----hcCCC
Q 006667 108 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG--GVHFDLVKRVFRDIQ----RVGQE 181 (636)
Q Consensus 108 Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDa--d~D~RL~RRI~RDi~----eRGrs 181 (636)
.+...+-+||....++...+. +.+.+.+.---.+||++ +...-+.+-|.+-.. ..|.+
T Consensus 93 ~~~G~VAI~DATN~T~~RR~~----------------l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~ 156 (222)
T PF01591_consen 93 EEGGQVAIFDATNSTRERRKM----------------LVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMD 156 (222)
T ss_dssp TS--SEEEEES---SHHHHHH----------------HHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-
T ss_pred cCCCeEEEEeCCCCCHHHHHH----------------HHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCC
Confidence 223344556665544321110 11122222224567763 333323444443332 36789
Q ss_pred HHHHHHHHHhcCCcchhhhccC
Q 006667 182 PEEIIHQISETVYPMYKAFIEP 203 (636)
Q Consensus 182 lEeVl~qyl~~VrP~~ekfIeP 203 (636)
+++.++.|.+++. .|++.-||
T Consensus 157 ~e~A~~Df~~RI~-~Ye~~YEp 177 (222)
T PF01591_consen 157 PEEAIEDFKKRIE-HYEKVYEP 177 (222)
T ss_dssp HHHHHHHHHHHHH-HHHTT---
T ss_pred HHHHHHHHHHHHH-hhcccccc
Confidence 9998887766643 44444444
No 180
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.52 E-value=0.0052 Score=64.39 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=32.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC----C--CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM----P--SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L----~--~v~VIsmDdY~ 77 (636)
+..+|+|.||+|+||||++.+|+..+ + .+.+|++|.|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35699999999999999999998865 2 47899999885
No 181
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.46 E-value=0.0037 Score=59.19 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=24.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|++.|+.|||||||++.+++.++
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999985
No 182
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.36 E-value=0.016 Score=61.44 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=24.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
.+|.|+|-|||||||..+.|.+. + ..+.|+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~-G---y~cvDN 31 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDL-G---YYCVDN 31 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhc-C---eeEEcC
Confidence 58999999999999999999984 2 455665
No 183
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.34 E-value=0.005 Score=68.52 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=33.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|++.|++||||||+|.+|+..+. .+.++++|.|.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 467999999999999999999998762 58899999876
No 184
>PRK13976 thymidylate kinase; Provisional
Probab=96.32 E-value=0.0083 Score=60.42 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=22.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+|+|.|.-||||||+++.|++.|.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999885
No 185
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.27 E-value=0.0038 Score=59.13 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
|+|+|++|+|||||++.|++. ++.++ +.|
T Consensus 2 I~i~G~~stGKTTL~~~L~~~--g~~~v--~E~ 30 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR--GYPVV--PEY 30 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH--T-EEE----T
T ss_pred EEEECCCCCCHHHHHHHHHHc--CCeEE--eec
Confidence 789999999999999999998 56666 554
No 186
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.26 E-value=0.0059 Score=57.17 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+|++.|+-|||||||++.+++.++
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999999985
No 187
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.23 E-value=0.0069 Score=64.84 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|++.||+||||||++.+|+..+. .+.++..|-|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 467999999999999999999998863 47788888765
No 188
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.20 E-value=0.0076 Score=63.08 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=33.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
-+.++|++.|++|+||||++.+|+..+. .+.++++|-|..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 3467999999999999999999998763 478899998753
No 189
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.13 E-value=0.0033 Score=64.56 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=23.9
Q ss_pred EeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 46 EKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 46 IsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
|.||.||||||+++.+.+.+. .+.+|++|-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 579999999999999999975 578999994
No 190
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.11 E-value=0.008 Score=58.70 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=24.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
||.|++..|||++|+|++|++.|+ +.+++-+-
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg-~~~~d~~i 32 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG-YPYYDREI 32 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT---EE-HHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcC-CccCCHHH
Confidence 689999999999999999999994 77766543
No 191
>PRK10867 signal recognition particle protein; Provisional
Probab=96.07 E-value=0.0096 Score=66.41 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=32.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEcccccC
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDNYND 78 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDdY~~ 78 (636)
-++.+|.++|++||||||+|.+|+..+ + .+.++++|.|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 346899999999999999888888754 2 478999998753
No 192
>PRK06761 hypothetical protein; Provisional
Probab=96.06 E-value=0.011 Score=62.53 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=24.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.++|.|+|++||||||+++.|++.+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999999985
No 193
>PRK13975 thymidylate kinase; Provisional
Probab=96.05 E-value=0.0057 Score=59.26 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=23.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+|+|.|+.||||||+|+.|++.++
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999996
No 194
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.02 E-value=0.0077 Score=59.64 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+|+|+||+||||||+.+.|...++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999888774
No 195
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.01 E-value=0.0067 Score=57.94 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=29.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
++++.|++||||||++..++..+. .+.++++|.|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 688999999999999999988752 47789998764
No 196
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.91 E-value=0.01 Score=66.31 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~ 66 (636)
|+|+|++|+||||||++|++.|.
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHHH
Confidence 78899999999999999999874
No 197
>PHA03132 thymidine kinase; Provisional
Probab=95.88 E-value=0.02 Score=66.02 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+|.|.|+.||||||+++.|++.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999998
No 198
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.87 E-value=0.0073 Score=65.19 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=29.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
..+|+|+|++|||||||+..|...+. .+.+|+.|.
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 35788899999999999999888764 488999986
No 199
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.87 E-value=0.0076 Score=57.98 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.9
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 48 GPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 48 GgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
|+|||||||+++.|+..++ ...++.|.++
T Consensus 2 G~sGsGKSTla~~la~~l~-~~~~~~d~~~ 30 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLH-AAFLDGDFLH 30 (163)
T ss_pred CCCCCcHHHHHHHHHHHhC-CeEEeCccCC
Confidence 9999999999999999994 7788888764
No 200
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.80 E-value=0.014 Score=65.03 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=32.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDdY~ 77 (636)
++.+|.++|++||||||+|.+|+..+ + .+.++++|.|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 46799999999999999999998774 1 47889999865
No 201
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.78 E-value=0.0063 Score=57.61 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
++|+|+|+++||||||++.|...+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999874
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.77 E-value=0.013 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
....+.|.|++|+||||+++.+...+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999986
No 203
>PRK09087 hypothetical protein; Validated
Probab=95.74 E-value=0.058 Score=54.93 Aligned_cols=125 Identities=13% Similarity=0.154 Sum_probs=68.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCc--cccc--CCCCCc--ccccHHHHHHHHHhhhC-CCceee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--RIID--GNFDDP--RLTDYDTLLENIRGLKE-GKAVQV 113 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~--r~~d--gnfD~P--~afD~dlL~~~L~~Lk~-Gk~I~i 113 (636)
.+.+.|.|++|||||+|++.+++.. ++.+|+.++|.... .... .-.|+- ...+-+.|.+.+..+.+ |+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~i-- 120 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-DALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSL-- 120 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-CCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeE--
Confidence 4568999999999999999999876 57778776553210 0000 000111 12344556666665554 3222
Q ss_pred eeeeccCCcccCcceeecCCCceEEEEehh-----hh-hhcccCCcc--EEEEEeCChhhHHHHHHhhhhhhcCCCHH-H
Q 006667 114 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY-----AL-SEKLRPLID--LRVSVTGGVHFDLVKRVFRDIQRVGQEPE-E 184 (636)
Q Consensus 114 PvYDf~t~~R~~~eti~v~~~dVIIVEGiy-----aL-~~eLRdl~D--LKIFVDad~D~RL~RRI~RDi~eRGrslE-e 184 (636)
|+-+.. .. .+.++..+. +.+-+..+.+..+...+++-...+|...+ +
T Consensus 121 ------------------------lits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e 176 (226)
T PRK09087 121 ------------------------LMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH 176 (226)
T ss_pred ------------------------EEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 111111 11 134454443 45556666666666666666666776543 4
Q ss_pred HHHHHHhc
Q 006667 185 IIHQISET 192 (636)
Q Consensus 185 Vl~qyl~~ 192 (636)
+++....+
T Consensus 177 v~~~La~~ 184 (226)
T PRK09087 177 VVYYLVSR 184 (226)
T ss_pred HHHHHHHH
Confidence 55444433
No 204
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.73 E-value=0.011 Score=66.51 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=33.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
++.+|.++|++|+||||+|.+|+..++...+|+.|.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR 291 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVR 291 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHH
Confidence 46799999999999999999999999644589999874
No 205
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.70 E-value=0.011 Score=57.78 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=22.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+|+|.||+||||||+|..++..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 689999999999999999999874
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.67 E-value=0.0087 Score=54.50 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
+++|.|++|+||||++..++.... .+.+++.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 468999999999999999988753 355566554
No 207
>PF13173 AAA_14: AAA domain
Probab=95.67 E-value=0.013 Score=53.67 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=28.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC---CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP---SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~---~v~VIsmDdY 76 (636)
+++++|.|+-|+||||+++.+++.+. .+..+++|+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 57899999999999999999998753 4556666653
No 208
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.64 E-value=0.011 Score=64.09 Aligned_cols=36 Identities=25% Similarity=0.531 Sum_probs=29.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDd 75 (636)
....|.|+|++||||||+.+.|...++ ...++..++
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 356899999999999999999999887 344555554
No 209
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.63 E-value=0.009 Score=61.33 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-++.|.||||||||||.++|-..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 558999999999999999998754
No 210
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.63 E-value=0.0099 Score=58.66 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=23.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.++++|.|++|||||||++.|...+.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh
Confidence 45899999999999999999998874
No 211
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.62 E-value=0.019 Score=65.24 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...++|.|+||||||||++.|...++
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 466899999999999999999999874
No 212
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.56 E-value=0.016 Score=56.67 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=23.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
...++|+|++||||||+.+.|...++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45789999999999999999998876
No 213
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.54 E-value=0.019 Score=57.30 Aligned_cols=36 Identities=36% Similarity=0.454 Sum_probs=29.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC---CcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP---SIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~---~v~VIsmDdY~ 77 (636)
..|+|.|+.||||||+.+.+...++ ++.++..|.++
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT 40 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence 3689999999999999999998864 46677777654
No 214
>PF05729 NACHT: NACHT domain
Probab=95.52 E-value=0.01 Score=54.69 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+++.|.|++|+||||+++.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 5789999999999999999998763
No 215
>PRK10646 ADP-binding protein; Provisional
Probab=95.46 E-value=0.02 Score=55.65 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=24.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|++.|.-|||||||++.|++.++
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999999985
No 216
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.011 Score=65.67 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=32.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC-----CcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~-----~v~VIsmDdY~~ 78 (636)
+..+|++.||+||||||++.+|+..+. .+.++++|.|.-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 467899999999999999999997541 377899998754
No 217
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.016 Score=64.03 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=34.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
.+.++|++.||+|+||||++.+|+..+. .+.+|++|.|.-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4578999999999999999999997652 478999999864
No 218
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.42 E-value=0.021 Score=63.74 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=32.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
.++.+|.++|++||||||+|.+|+..+. .+.+++.|.|.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 4567999999999999999999998763 47788888764
No 219
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.41 E-value=0.012 Score=64.21 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+++++++.||+||||||+|+.|+..+.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3577899999999999999999999984
No 220
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.32 E-value=0.011 Score=61.97 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=57.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc---ccCC----cccccC-CCCCccccc--------HHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN---YNDS----SRIIDG-NFDDPRLTD--------YDTLLE 100 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd---Y~~~----~r~~dg-nfD~P~afD--------~dlL~~ 100 (636)
..+|||+|++|+|||||...|...|- .+.||..|- |.-. ++..-. -..+|..|- .--+..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~ 108 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR 108 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence 34788899999999999999998863 588999883 2110 111000 001222221 000110
Q ss_pred HHHhhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhh--cccCCccEEEEEeCCh
Q 006667 101 NIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE--KLRPLIDLRVSVTGGV 163 (636)
Q Consensus 101 ~L~~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~--eLRdl~DLKIFVDad~ 163 (636)
...+. -..+....-++||||-+-+... ++.+++|..++|-.|.
T Consensus 109 ~t~~~--------------------v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 109 ATRDA--------------------VRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp HHHHH--------------------HHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred hHHHH--------------------HHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 00000 0112234568999999998873 6889999999998775
No 221
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.30 E-value=0.021 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVL 62 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLa 62 (636)
..+++|.|+|||||||+++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999987
No 222
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.25 E-value=0.019 Score=56.20 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=30.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-----CcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-----~v~VIsmDdY~~ 78 (636)
...+.++||||+|||.+|+.|++.+. ....++|-.|..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 35789999999999999999999975 345666666755
No 223
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.24 E-value=0.021 Score=55.39 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
++|+|+|.+||||||++.+|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999874
No 224
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.02 Score=63.08 Aligned_cols=39 Identities=33% Similarity=0.522 Sum_probs=33.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC--------CcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP--------SIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~--------~v~VIsmDdY~~ 78 (636)
.+.+|++.|++|+||||++.+|+..+. .+.++++|.|.-
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 357999999999999999999998752 478999998853
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.028 Score=62.42 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
.++|++.|++|+||||++.+|+..+- .+.++++|.|.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 47899999999999999999997652 47789999875
No 226
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.22 E-value=0.028 Score=63.97 Aligned_cols=27 Identities=41% Similarity=0.628 Sum_probs=24.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...++|.|+|||||||+++.|...+|
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p 401 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999998875
No 227
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.20 E-value=0.018 Score=60.47 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=28.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC---CcEEEEccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP---SIAVITMDN 75 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~---~v~VIsmDd 75 (636)
++|+|+|.+|||||||+..|...|. .+.+|..|.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G~V~~IKhd~ 38 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRGRVGTVKHMD 38 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5899999999999999999999874 466676664
No 228
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.20 E-value=0.022 Score=62.90 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=36.7
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEcccccCC
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS 79 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~~~ 79 (636)
+..+.++|++-||+|.||||...+|+.+|. .+.+|++|.|+-.
T Consensus 199 ~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG 247 (407)
T COG1419 199 IVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG 247 (407)
T ss_pred ccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence 335689999999999999999999998863 5899999999754
No 229
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.13 E-value=0.017 Score=56.87 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466999999999999999999998764
No 230
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.12 E-value=0.035 Score=62.74 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...|+|.|+||||||||.+.|...++
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 467899999999999999999998864
No 231
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.11 E-value=0.043 Score=54.85 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHhhcCCCceEecC-----CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 26 VKKKDSDRYEIVPI-----EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 26 ~~r~~~~~~~Iv~i-----~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+.-+..+.+-+-++ +.--|+|+||||+|||||-+.++...+
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 33344666666555 355799999999999999999998653
No 232
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.11 E-value=0.017 Score=55.49 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=25.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMD 74 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmD 74 (636)
||+|.|++|||||||+.+|...+. .+.+|-.|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 578999999999999999999863 35555544
No 233
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.11 E-value=0.02 Score=60.47 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|+|+|++|||||||+..|...+. .+.+|+.|...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 356889999999999999999988752 47789998643
No 234
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.10 E-value=0.024 Score=61.13 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDd 75 (636)
...|+|+|++||||||+.+.|...+| .-.++..++
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd 195 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVED 195 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecC
Confidence 56799999999999999999999987 344555554
No 235
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.10 E-value=0.017 Score=63.69 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=24.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+.|+|.|++|||||||++.|++.++
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999999985
No 236
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.07 E-value=0.015 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=20.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.+.+.|.|++|+|||++++.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999986
No 237
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.06 E-value=0.024 Score=55.37 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+++|.||+|||||++|.+++...+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~ 24 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999987643
No 238
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.04 E-value=0.019 Score=56.51 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 239
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.03 E-value=0.023 Score=58.28 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
++++|.||+|+|||.+|-.|++.+ +.+||+.|..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~-g~pvI~~Dri 35 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKT-GAPVISLDRI 35 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH---EEEEE-SG
T ss_pred cEEEEECCCCCChhHHHHHHHHHh-CCCEEEecce
Confidence 689999999999999999999999 5899999984
No 240
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.02 E-value=0.02 Score=55.64 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999997764
No 241
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.02 E-value=0.018 Score=56.89 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 366999999999999999999998764
No 242
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.023 Score=61.36 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=29.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS 79 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~ 79 (636)
.++|.+.||+|.|||+||++|++.+. +-..|.|+..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS---IR~~~~y~~~ 212 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS---IRTNDRYYKG 212 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe---eeecCccccc
Confidence 68999999999999999999999983 3345566543
No 243
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.00 E-value=0.019 Score=56.85 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998764
No 244
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.00 E-value=0.019 Score=52.66 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=24.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDN 75 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDd 75 (636)
|.|.|++|+|||++++.+++.++ .+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence 67899999999999999999985 234454443
No 245
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.05 Score=62.30 Aligned_cols=38 Identities=32% Similarity=0.445 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC-----C-CcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM-----P-SIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L-----~-~v~VIsmDdY~~ 78 (636)
..+|+|.|++|+||||++.+|+..+ + .+.++++|.|.-
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 5799999999999999999998753 1 478999998864
No 246
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.97 E-value=0.028 Score=55.70 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=28.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
..++.|+|++||||||||..++.... .+.+++.|.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 67999999999999999999987641 355666653
No 247
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.96 E-value=0.028 Score=60.56 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----CCcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----PSIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~~v~VIsmDd 75 (636)
...|.|+|++||||||+.+.|...+ ++..++..++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd 182 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED 182 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 3467899999999999999999876 3445666654
No 248
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.94 E-value=0.032 Score=58.28 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKV 61 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkL 61 (636)
..+++|+|+||||||||++.+
T Consensus 21 g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred CcEEEEECCCCCchHHHHHHH
Confidence 679999999999999999866
No 249
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.94 E-value=0.021 Score=58.73 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.-.++|.||||||||||-+.|.-..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 5589999999999999999998764
No 250
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.93 E-value=0.034 Score=53.91 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..||.+.|.=|||||||++.|++.|+
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 456999999999999999999999985
No 251
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.018 Score=56.78 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
-|+|+|++|+||||++.+|++.+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHH
Confidence 589999999999999999999874
No 252
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.92 E-value=0.02 Score=56.41 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 253
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.91 E-value=0.02 Score=56.66 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987754
No 254
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.021 Score=56.26 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998754
No 255
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.02 Score=57.32 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 356999999999999999999997764
No 256
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.021 Score=57.15 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466999999999999999999998764
No 257
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.88 E-value=0.021 Score=56.49 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 258
>PRK14974 cell division protein FtsY; Provisional
Probab=94.87 E-value=0.024 Score=61.34 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=30.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
..+|+++|++|+||||++.+|+..+. .+.++..|-|..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 56999999999999998888887653 366788887753
No 259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.022 Score=56.27 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 260
>PRK13768 GTPase; Provisional
Probab=94.87 E-value=0.027 Score=58.18 Aligned_cols=34 Identities=26% Similarity=0.599 Sum_probs=28.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
.++.|.|++||||||++..++..+. .+.+|+.|-
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4789999999999999999988763 477888885
No 261
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.86 E-value=0.02 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=23.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||.+.|...++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 46899999999999999999998764
No 262
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.86 E-value=0.028 Score=57.66 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=28.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-C-cEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-S-IAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~-v~VIsmDd 75 (636)
...|.|+|++||||||+.+.|.+.++ . -.++..++
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd 163 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED 163 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence 56899999999999999999999986 3 45565554
No 263
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.15 Score=52.75 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=32.7
Q ss_pred CCCceEecCCCeEEEEeCCCCCcHHHHHHHHHHhCCC
Q 006667 31 SDRYEIVPIEDTLSFEKGPSGAGKTVFTEKVLNFMPS 67 (636)
Q Consensus 31 ~~~~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~~ 67 (636)
.-.+.++|.+.+-|.|+||+|+||+|+.+.|.+.+|+
T Consensus 27 ~~~~~~~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~ 63 (231)
T KOG0707|consen 27 AVSPQTPPGDFKPIVLSGPSGVGKSTLLKRLREELGG 63 (231)
T ss_pred eeccccCCCCCceEEEeCCCCcchhHHHHHHHHHcCC
Confidence 4456678888899999999999999999999999984
No 264
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.85 E-value=0.032 Score=59.18 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=28.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
...|.|+|++||||||+++.|...++ +..++..++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 45678999999999999999998864 3456666653
No 265
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.78 E-value=0.021 Score=57.12 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356899999999999999999998764
No 266
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.023 Score=57.08 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 267
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.78 E-value=0.032 Score=54.83 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=28.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmDd 75 (636)
..++.|.|++|||||+||..++... + .+..|+.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 6799999999999999999988654 1 467777775
No 268
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.77 E-value=0.027 Score=61.09 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 76 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY 76 (636)
.-|.|+||+||||||+.++|....+ .-.+|++.+-
T Consensus 174 ~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDt 209 (355)
T COG4962 174 CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDT 209 (355)
T ss_pred eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeeh
Confidence 4689999999999999999999876 3367777763
No 269
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.77 E-value=0.036 Score=60.36 Aligned_cols=26 Identities=19% Similarity=0.543 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+.-+|+|+||+||||||+.+.|...+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 270
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.025 Score=56.17 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998753
No 271
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.76 E-value=0.023 Score=56.05 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356999999999999999999987653
No 272
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.74 E-value=0.024 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 273
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.74 E-value=0.029 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999999876
No 274
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.74 E-value=0.024 Score=57.02 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 356999999999999999999997764
No 275
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.74 E-value=0.033 Score=61.10 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=27.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
-+|.|+||+||||||+.+.|.+.++ +..++..++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEd 187 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYED 187 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 4789999999999999999988762 345666664
No 276
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.71 E-value=0.025 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466999999999999999999998764
No 277
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.71 E-value=0.037 Score=53.53 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=27.0
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
.+...=|+|.|+|||||||+|..|.+. +..+++=|
T Consensus 11 ~~~g~gvLi~G~sG~GKStlal~L~~~--g~~lvaDD 45 (149)
T cd01918 11 EVGGIGVLITGPSGIGKSELALELIKR--GHRLVADD 45 (149)
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHHc--CCeEEECC
Confidence 344567899999999999999999986 45555433
No 278
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.026 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999997654
No 279
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=94.70 E-value=0.19 Score=54.69 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=42.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc--cCCcccccCCCCCcccccHHHHH-HHHHhhh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY--NDSSRIIDGNFDDPRLTDYDTLL-ENIRGLK 106 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY--~~~~r~~dgnfD~P~afD~dlL~-~~L~~Lk 106 (636)
+..++.++|++|||||++...|.+. +..+|++.+. |+.+..-...-..|...+|+... ..|..+.
T Consensus 140 ~~~~ivl~G~TGsGKT~iL~~L~~~--~~~vlDlE~~aehrGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~ 207 (345)
T PRK11784 140 QFPLVVLGGNTGSGKTELLQALANA--GAQVLDLEGLANHRGSSFGRLGGPQPSQKDFENLLAEALLKLD 207 (345)
T ss_pred cCceEecCCCCcccHHHHHHHHHhc--CCeEEECCchhhhccccccCCCCCCcchHHHHHHHHHHHHcCC
Confidence 3456779999999999999999875 5678999875 33221100111468888888644 3454443
No 280
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.69 E-value=0.026 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 281
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.69 E-value=0.034 Score=58.98 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=27.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDd 75 (636)
...|+|+|++||||||+.+.|...++ .-.++..++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 56899999999999999999999886 223344444
No 282
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.67 E-value=0.049 Score=63.43 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...++|.|+||||||||++.|...++
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999999998874
No 283
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.65 E-value=0.027 Score=55.06 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999998764
No 284
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.65 E-value=0.027 Score=56.59 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 285
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.64 E-value=0.028 Score=56.54 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 467999999999999999999997754
No 286
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.027 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998754
No 287
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.62 E-value=0.042 Score=59.18 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=23.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.-+|.|+||+||||||+.+.|...++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45899999999999999999988764
No 288
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.024 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+++|.|++|||||||.+.|+..++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998764
No 289
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.027 Score=56.79 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366999999999999999999998764
No 290
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.61 E-value=0.028 Score=56.12 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 467999999999999999999997753
No 291
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.61 E-value=0.028 Score=55.41 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999998764
No 292
>COG0645 Predicted kinase [General function prediction only]
Probab=94.60 E-value=0.04 Score=54.46 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=31.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+++.+.|.+||||||+|+.|++.++ ...|..|...+
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg-A~~lrsD~irk 37 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG-AIRLRSDVIRK 37 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC-ceEEehHHHHH
Confidence 5788999999999999999999995 88999998743
No 293
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.59 E-value=0.036 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.621 Sum_probs=21.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.+.+|+|++||||||+-.++.-.|
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 294
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.55 E-value=0.03 Score=55.89 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 467999999999999999999998764
No 295
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=94.52 E-value=0.16 Score=59.51 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
..+|.+.|-+|+||||+|++|++.|. .+.+++.|.|.+
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr 256 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRR 256 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHh
Confidence 45889999999999999999999974 477888888754
No 296
>PF13245 AAA_19: Part of AAA domain
Probab=94.52 E-value=0.042 Score=46.99 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=18.7
Q ss_pred CeEEEEeCCCCCcHH-HHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKT-VFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKT-TLAkkLae~L 65 (636)
..+..|.||+||||| |+++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 557778999999999 5555555544
No 297
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.51 E-value=0.028 Score=55.75 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 298
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.03 Score=53.83 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999997654
No 299
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.49 E-value=0.028 Score=56.10 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 300
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.036 Score=58.13 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=32.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
...||+|+|.||.||||+|..|+..++=-.+|+.|...
T Consensus 88 ~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IR 125 (299)
T COG2074 88 RPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIR 125 (299)
T ss_pred CCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHH
Confidence 35699999999999999999999999523588998753
No 301
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.49 E-value=0.028 Score=53.58 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
+|++.|+.||||||++..+...+. .+.++.+|-
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 378899999999999999998862 477888884
No 302
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.48 E-value=0.032 Score=53.58 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||++.|...++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466999999999999999999998764
No 303
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.48 E-value=0.03 Score=55.05 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 356999999999999999999998764
No 304
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.46 E-value=0.032 Score=56.50 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35699999999999999999999765
No 305
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.46 E-value=0.037 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++||||||+++.+...++
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34788999999999999999999875
No 306
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.45 E-value=0.031 Score=58.11 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.-.+||.|+|||||||+++.|+-...
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 45899999999999999999998643
No 307
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.44 E-value=0.035 Score=60.97 Aligned_cols=38 Identities=32% Similarity=0.407 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----C--CcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----P--SIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~--~v~VIsmDdY~~ 78 (636)
..++++.||+|+||||++.+|+..+ + .+.++..|.|..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ 180 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI 180 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 5699999999999999999999753 2 477899998853
No 308
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.40 E-value=0.035 Score=53.56 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999998754
No 309
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.40 E-value=0.038 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 356999999999999999999998764
No 310
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.40 E-value=0.034 Score=55.04 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|....+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 467999999999999999999998754
No 311
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.39 E-value=0.029 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+|++|+|.++||||||..+|...+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHH
Confidence 36899999999999999999999874
No 312
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.38 E-value=0.032 Score=55.16 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 356899999999999999999998764
No 313
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.37 E-value=0.036 Score=61.64 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=30.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----C--CcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----P--SIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~--~v~VIsmDdY~ 77 (636)
..++++.||+|+||||++.+|+..+ + .+.+|++|.|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 5699999999999999999987654 1 47889999874
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.36 E-value=0.035 Score=54.32 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 315
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.35 E-value=0.033 Score=56.09 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||.+.|...++
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56899999999999999999998764
No 316
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.34 E-value=0.035 Score=55.00 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 317
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.034 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998764
No 318
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.32 E-value=0.035 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 466999999999999999999997654
No 319
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.32 E-value=0.036 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998654
No 320
>PRK10908 cell division protein FtsE; Provisional
Probab=94.31 E-value=0.034 Score=55.32 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999997764
No 321
>PF13479 AAA_24: AAA domain
Probab=94.31 E-value=0.1 Score=52.33 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=39.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc-cCCcccccCCCCCcccccHHHHHHHHHhhh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY-NDSSRIIDGNFDDPRLTDYDTLLENIRGLK 106 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY-~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk 106 (636)
-.++|.|++|+||||+|..+ +++.+|++|.= ...... .+.+...--+|+.+.+.+..+.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~--~~~~~i~i~s~~~~~~~~~~l~ 63 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFL--DDGDVIPITSWEDFLEALDELE 63 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhh--cCCCeeCcCCHHHHHHHHHHHH
Confidence 36889999999999999987 67889999862 111111 0223333337778877776553
No 322
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.31 E-value=0.037 Score=55.81 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999997754
No 323
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.30 E-value=0.052 Score=55.37 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=27.5
Q ss_pred eEecCCCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 35 EIVPIEDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 35 ~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+.+....+.+|.|++||||||+.++|.-.++
T Consensus 19 ~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 19 VISGFDPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred eeccCCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34477788999999999999999999998764
No 324
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.30 E-value=0.038 Score=54.12 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|.|++|||||||.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999999864
No 325
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.30 E-value=0.037 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 456999999999999999999998653
No 326
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.30 E-value=0.061 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..++.|.|++|||||+||..++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999854
No 327
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.30 E-value=0.032 Score=62.73 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...++|.|+|||||||+++.|...++
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 328
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.29 E-value=0.035 Score=55.68 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 466999999999999999999998764
No 329
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.28 E-value=0.036 Score=56.07 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999997754
No 330
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.28 E-value=0.033 Score=55.61 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||.+.|+..++
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 46899999999999999999998754
No 331
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.28 E-value=0.035 Score=56.19 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||++.|+..++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999998764
No 332
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.27 E-value=0.037 Score=55.54 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35699999999999999999999763
No 333
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.26 E-value=0.036 Score=55.36 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998764
No 334
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.26 E-value=0.069 Score=59.57 Aligned_cols=43 Identities=21% Similarity=0.426 Sum_probs=36.1
Q ss_pred eEecCCCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 35 EIVPIEDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 35 ~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
.+.+-++.+|...|-.||||||.|.+|+.+|. .+-++++|-|+
T Consensus 94 ~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 94 NLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred ccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 33345678999999999999999999999874 57889999876
No 335
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.25 E-value=0.036 Score=56.62 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||++.|+..++
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466999999999999999999998764
No 336
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.036 Score=54.86 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+++|.|++|||||||.+.|...++
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999998764
No 337
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.23 E-value=0.041 Score=52.46 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=25.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMDN 75 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmDd 75 (636)
++.|.|++|+|||+||..++... + .+.+++++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 36899999999999999886653 1 466777764
No 338
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.038 Score=55.27 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 356999999999999999999998764
No 339
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.23 E-value=0.037 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 340
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.037 Score=55.84 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999998764
No 341
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.21 E-value=0.039 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVL 62 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLa 62 (636)
..+++|.|++|||||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 5689999999999999999884
No 342
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.20 E-value=0.038 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 343
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.20 E-value=0.06 Score=57.80 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=27.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----CCcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----PSIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~~v~VIsmDd 75 (636)
...|.|+|++||||||+++.|...+ +...++..++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd 186 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIED 186 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcC
Confidence 5678999999999999999999863 2345555554
No 344
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.20 E-value=0.068 Score=55.69 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=28.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDd 75 (636)
+.-+|.|+|++||||||+.+.+...++ +..++..++
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEd 116 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVED 116 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECC
Confidence 345899999999999999998877764 345666654
No 345
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.20 E-value=0.042 Score=62.20 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=31.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~ 77 (636)
..++++.||+|+||||++.+|+..+. .+.++.+|.|+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 46999999999999999999998751 36788998875
No 346
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.19 E-value=0.04 Score=54.15 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+...+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466999999999999999999998754
No 347
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.18 E-value=0.039 Score=55.99 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35699999999999999999999775
No 348
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.042 Score=52.71 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 466999999999999999999998764
No 349
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.17 E-value=0.037 Score=56.15 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 350
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.16 E-value=0.038 Score=55.44 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999998653
No 351
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.16 E-value=0.04 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 36699999999999999999999765
No 352
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.16 E-value=0.038 Score=56.72 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 353
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.039 Score=54.95 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 356899999999999999999998764
No 354
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.15 E-value=0.049 Score=45.22 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDN 75 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDd 75 (636)
+++++|..|+||||++..|+..+. +..++-.|+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d 35 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDD 35 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECC
Confidence 477899889999999999999873 455566664
No 355
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.15 E-value=0.042 Score=54.34 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|....+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998754
No 356
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.15 E-value=0.05 Score=56.02 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=25.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEE-EEccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAV-ITMDN 75 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~V-IsmDd 75 (636)
+|+|+|..||||||+|+.+.+.. ..+ ++|-+
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g--~~~~~~~~d 33 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENY--NAVKYQLAD 33 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcC--CcEEEehhH
Confidence 79999999999999999999874 333 66544
No 357
>PRK13764 ATPase; Provisional
Probab=94.15 E-value=0.053 Score=62.93 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=26.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmD 74 (636)
...|.|+|++||||||+++.|...++ +-.++.++
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE 292 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME 292 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 45689999999999999999998875 23344554
No 358
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.15 E-value=0.039 Score=55.29 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999998754
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.15 E-value=0.038 Score=52.00 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356999999999999999999998764
No 360
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.14 E-value=0.039 Score=54.86 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 361
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.14 E-value=0.053 Score=61.91 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEE
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVI 71 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VI 71 (636)
+.+++.++||+|+||||..+.|++.++ ..++
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg-~~v~ 74 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELG-FEVQ 74 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhC-CeeE
Confidence 466999999999999999999999985 4444
No 362
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.13 E-value=0.042 Score=55.79 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35689999999999999999999753
No 363
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.13 E-value=0.04 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 364
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.13 E-value=0.039 Score=55.36 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 357999999999999999999998764
No 365
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.12 E-value=0.15 Score=60.66 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=31.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----C--CcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----P--SIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~--~v~VIsmDdY~ 77 (636)
..+|++.||+|+||||++.+|+..+ + .+.++..|.|.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 5799999999999999999999765 1 46789999875
No 366
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.042 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35699999999999999999999764
No 367
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.11 E-value=0.043 Score=54.40 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||.+.|+...+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 56999999999999999999997653
No 368
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.11 E-value=0.038 Score=56.01 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 467999999999999999999998764
No 369
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.09 E-value=0.044 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 356999999999999999999998764
No 370
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.054 Score=58.48 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=33.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
+.+||+|.|++|||||-||-.|+.+|+ ..+|+.|..
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~-~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFP-GEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCC-ceeecccce
Confidence 678999999999999999999999995 899999984
No 371
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.043 Score=55.28 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 372
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.09 E-value=0.049 Score=60.85 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
+++.-|.+.||+|+||||+|+.|++.+ ++.++..|.
T Consensus 48 ~~~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~ 83 (443)
T PRK05201 48 VTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA 83 (443)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHh-CChheeecc
Confidence 334578999999999999999999998 477777774
No 373
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=94.07 E-value=0.028 Score=53.52 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 50 SGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 50 SGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
+||||||+++.|++.| +...+++|.++
T Consensus 1 ~GsGKStvg~~lA~~L-~~~fiD~D~~i 27 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRL-GRPFIDLDDEI 27 (158)
T ss_dssp TTSSHHHHHHHHHHHH-TSEEEEHHHHH
T ss_pred CCCcHHHHHHHHHHHh-CCCccccCHHH
Confidence 5999999999999999 58999999975
No 374
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.06 E-value=0.16 Score=48.95 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=67.3
Q ss_pred cceEEeeecCCeEEEEEeeeecCCCcccccceeEEEeeechhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcc
Q 006667 271 QSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRK 350 (636)
Q Consensus 271 deaLRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v~~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~ 350 (636)
..-+|+|..|.+++||+|++... -.|-|||-.+...+...-|-+-|+..|.|+|.+...++++-.+|...|-..-
T Consensus 36 ~~tVRVRi~g~~A~LTiK~~~~~-----~~R~EfEY~iPl~DA~e~l~~~~g~~IEK~R~~v~~~G~~wEVDvF~G~n~g 110 (156)
T COG2954 36 GRTVRVRIVGDRAYLTIKGGASG-----LSRSEFEYEIPLADAEEMLTTACGRVIEKTRYPVRHGGFLWEVDVFLGDNAG 110 (156)
T ss_pred CcEEEEEEecceEEEEEEccccc-----eeeeeeeecccccCHHHHHHHhcchheeeeEeeeeeCCEEEEEeeecCcccc
Confidence 46699999999999999987543 4688999999877787777788888999999999999999999999987765
Q ss_pred eEEEe
Q 006667 351 YVQVQ 355 (636)
Q Consensus 351 FveIe 355 (636)
-|.-|
T Consensus 111 LvvAE 115 (156)
T COG2954 111 LVVAE 115 (156)
T ss_pred eEEEE
Confidence 55433
No 375
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.043 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35699999999999999999999765
No 376
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.05 E-value=0.037 Score=56.88 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356999999999999999999998764
No 377
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.04 E-value=0.047 Score=64.46 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=27.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY 76 (636)
...|+|.|.||||||||++.|...+. ..--|..|++
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 56899999999999999999998874 2224555554
No 378
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.03 E-value=0.1 Score=54.89 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=48.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCC--ccc----ccCCCCCcccccHHHHHHHHHhhhCCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS--SRI----IDGNFDDPRLTDYDTLLENIRGLKEGK 109 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~--~r~----~dgnfD~P~afD~dlL~~~L~~Lk~Gk 109 (636)
+...+++.|++|+||||++..|+..+. .+.++++|.|.-. ..+ ...+|....+.|.+.+.+.+..+++..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 446999999999999999999988752 4778999987421 111 112333333456666666666654322
Q ss_pred ceeeeeeec
Q 006667 110 AVQVPIYDF 118 (636)
Q Consensus 110 ~I~iPvYDf 118 (636)
...+.+.|.
T Consensus 154 ~~D~ViIDt 162 (270)
T PRK06731 154 RVDYILIDT 162 (270)
T ss_pred CCCEEEEEC
Confidence 233344443
No 379
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.02 E-value=0.045 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35689999999999999999998753
No 380
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.046 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 46699999999999999999999865
No 381
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.00 E-value=0.045 Score=54.97 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998754
No 382
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.99 E-value=0.042 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||.+.|+..++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56899999999999999999998764
No 383
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.044 Score=56.47 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466999999999999999999998764
No 384
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.96 E-value=0.039 Score=53.90 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
|+|+|++|+||||+.+++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 385
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.049 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35689999999999999999999875
No 386
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.94 E-value=0.048 Score=55.29 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||++.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 35689999999999999999999765
No 387
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.94 E-value=0.047 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999998764
No 388
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.93 E-value=0.035 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=19.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++.|.|++|+||||+.+.+.+.+.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999888764
No 389
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.92 E-value=0.044 Score=57.09 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 390
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.92 E-value=0.044 Score=55.46 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|.|++|||||||.+.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3569999999999999999999874
No 391
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.044 Score=54.17 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 456999999999999999999998753
No 392
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.90 E-value=0.048 Score=54.58 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 356999999999999999999998764
No 393
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.048 Score=54.71 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999987654
No 394
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.89 E-value=0.046 Score=56.42 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 395
>PLN02924 thymidylate kinase
Probab=93.88 E-value=0.053 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=24.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|+|.|+-||||||+|+.|++.|.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999985
No 396
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.88 E-value=0.031 Score=58.38 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHhhcCCCceEecC-----CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 3 QDTSSGADSPRRRPGLLRDQVQLVKKKDSDRYEIVPI-----EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 3 ~~~~~~~~~~~~~~~ll~~ql~~~~r~~~~~~~Iv~i-----~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.|+......|.|+.|=..=++.-+..+..+++.+-.+ +..+++|.|++|||||||.+.|+..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 22 TDTTDPSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred ccccCCCCCccccCCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444455566776552211122233333333333232 46799999999999999999999765
No 397
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.88 E-value=0.048 Score=52.17 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|....+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999997654
No 398
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.047 Score=56.40 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 399
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.88 E-value=0.049 Score=55.35 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+...
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 35699999999999999999999653
No 400
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.87 E-value=0.055 Score=55.26 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36689999999999999999999765
No 401
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.87 E-value=0.05 Score=55.94 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|.|++|||||||.+.|+..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4669999999999999999999875
No 402
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.84 E-value=0.051 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|.|++|||||||.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3569999999999999999999864
No 403
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.83 E-value=0.051 Score=55.05 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+++|.|++|||||||.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 5689999999999999999999754
No 404
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.82 E-value=0.049 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 466999999999999999999997654
No 405
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.051 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|.|++|||||||.+.|...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999999865
No 406
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.047 Score=56.40 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366999999999999999999997753
No 407
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.05 Score=55.21 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 466999999999999999999998764
No 408
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.82 E-value=0.052 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 467999999999999999999998753
No 409
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=93.81 E-value=0.26 Score=51.22 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=23.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+|.|||-++|||||.|+.|.+.|.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~ 26 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALK 26 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHH
Confidence 5899999999999999999999985
No 410
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.81 E-value=0.061 Score=49.46 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=26.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
|+++|.+|+||||++..|+..+. .+.+++.|-
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 78899999999999999988763 366777774
No 411
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.053 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+...
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46699999999999999999999764
No 412
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.80 E-value=0.048 Score=54.23 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 366999999999999999999998764
No 413
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.79 E-value=0.055 Score=53.27 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 356999999999999999999997653
No 414
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.77 E-value=0.048 Score=59.25 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=23.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.-+|+|+|.+|||||||+.+|...|.
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34788899999999999999998885
No 415
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.046 Score=56.38 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356899999999999999999998764
No 416
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.76 E-value=0.052 Score=56.07 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.76 E-value=0.052 Score=54.13 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.++++|+||+|||||||.+.|...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 479999999999999999999753
No 418
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.061 Score=54.45 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 356999999999999999999997653
No 419
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.74 E-value=0.051 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 420
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.74 E-value=0.053 Score=53.27 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 356999999999999999999998764
No 421
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.73 E-value=0.049 Score=55.97 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466999999999999999999998764
No 422
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.73 E-value=0.061 Score=54.07 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=25.5
Q ss_pred eEecCCCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 35 EIVPIEDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 35 ~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.+.++...+.+|.||.|||||||.++|.-.+
T Consensus 17 ~~~~~~~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 17 VIEPFSPKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred ccccCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3446666799999999999999999998544
No 423
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.72 E-value=0.069 Score=53.23 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=28.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmD 74 (636)
..++.|.|++|||||+||..++..+ + .+.+++.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 6799999999999999999998753 1 46677776
No 424
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.71 E-value=0.061 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|...+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999999875
No 425
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.056 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35689999999999999999999753
No 426
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.70 E-value=0.051 Score=53.64 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
...+.|.|++|+||||+|+.++.... .+..++++++
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 45788999999999999999997752 3455665554
No 427
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.061 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35699999999999999999999875
No 428
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.69 E-value=0.056 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 366999999999999999999997653
No 429
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.056 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|....
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35699999999999999999999764
No 430
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.68 E-value=0.077 Score=59.30 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
+++-|.+.||+|+||||+|+.|++.+ ++..+..|.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeec
Confidence 34578999999999999999999999 578888884
No 431
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.66 E-value=0.054 Score=55.63 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 432
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.64 E-value=0.052 Score=56.20 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 433
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.64 E-value=0.059 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 46699999999999999999999764
No 434
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.63 E-value=0.055 Score=55.37 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 466999999999999999999998763
No 435
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.63 E-value=0.052 Score=55.98 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999998764
No 436
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.62 E-value=0.058 Score=55.37 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 467999999999999999999998764
No 437
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.61 E-value=0.052 Score=56.48 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366999999999999999999997763
No 438
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.60 E-value=0.062 Score=55.01 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
..+.|.|++|+||||+|+.+.. ...+|+.|..
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~---~~~~~~~d~~ 44 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG---KTLVLSFDMS 44 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC---CCEEEecccc
Confidence 4699999999999999998852 4789999984
No 439
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.60 E-value=0.066 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
|+|.|++|||||||.+.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6889999999999999999864
No 440
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=93.58 E-value=0.53 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
++|.|+|-||||||+-.+.|.+.
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lEDl 24 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLEDL 24 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHhc
Confidence 57899999999999999999874
No 441
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.57 E-value=0.08 Score=59.03 Aligned_cols=39 Identities=31% Similarity=0.415 Sum_probs=31.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC----C--CcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM----P--SIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L----~--~v~VIsmDdY~~ 78 (636)
+..+|++.|++|+||||+..+|+..+ + .+.++..|.|.-
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri 234 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI 234 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 46799999999999999999998753 1 467788888753
No 442
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.56 E-value=0.055 Score=55.49 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 443
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.56 E-value=0.059 Score=54.40 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466999999999999999999998764
No 444
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.55 E-value=0.063 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||.+.|+..++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56999999999999999999998753
No 445
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.55 E-value=0.084 Score=54.63 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=24.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMD 74 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmD 74 (636)
-|.|.|++|+|||++|+.|+..++ .+..+++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 456899999999999999999875 23444443
No 446
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.54 E-value=0.059 Score=53.09 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 447
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.54 E-value=0.18 Score=54.90 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=27.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh--CC--------CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF--MP--------SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~--L~--------~v~VIsmDd 75 (636)
..++-|+|++|||||+||..++-. +| .+.+|+.+.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 678889999999999999988632 21 356777765
No 448
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.52 E-value=0.091 Score=52.60 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=28.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDd 75 (636)
..++.|+|++|+||||||..++..+ + .+.+++++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 5699999999999999999887653 2 467888776
No 449
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=93.52 E-value=0.44 Score=47.44 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEc-ccc-cCCcccccCCCCCcccccHHHHHHHHHhhhCCC-ceeeeee
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITM-DNY-NDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPIY 116 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsm-DdY-~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk-~I~iPvY 116 (636)
..++|.+-|||||||-||.......+..-.-++. --| .++.. . +.-| -++.+...+.+ .-.+|. .+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~-a-g~Ed-H~avs~~eF~~---~a~~g~FAl----- 72 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPAD-A-GGED-HDALSEAEFNT---RAGQGAFAL----- 72 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCC-C-Cccc-ccccCHHHHHH---HhhcCceeE-----
Confidence 3579999999999999999999998862110110 001 11110 0 1111 12333222221 111221 12
Q ss_pred eccCCccc-C---cceeecCCCceEEEEehhhhhhcccCC-ccE-EEEEeCChhhHHHHHHhhhhhhcCC-CHHHHHHHH
Q 006667 117 DFKSSSRI-G---YRTLEVPSSRIVIIEGIYALSEKLRPL-IDL-RVSVTGGVHFDLVKRVFRDIQRVGQ-EPEEIIHQI 189 (636)
Q Consensus 117 Df~t~~R~-~---~eti~v~~~dVIIVEGiyaL~~eLRdl-~DL-KIFVDad~D~RL~RRI~RDi~eRGr-slEeVl~qy 189 (636)
+|..|... + .-..++....+||+-|.-+..+.++.. .++ .|-|.++.++ |..|+ .+||+ +.|++..+.
T Consensus 73 sWqAhGL~Ygip~eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~V-LaqRL----~~RGREs~eeI~aRL 147 (192)
T COG3709 73 SWQAHGLSYGIPAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEV-LAQRL----AERGRESREEILARL 147 (192)
T ss_pred EehhcCccccCchhHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHH-HHHHH----HHhccCCHHHHHHHH
Confidence 33333211 0 011234667899999999888766643 354 4567777776 55555 46786 567777766
Q ss_pred Hhc
Q 006667 190 SET 192 (636)
Q Consensus 190 l~~ 192 (636)
...
T Consensus 148 ~R~ 150 (192)
T COG3709 148 ARA 150 (192)
T ss_pred Hhh
Confidence 543
No 450
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.51 E-value=0.089 Score=52.19 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=27.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC---CcEEEEcc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP---SIAVITMD 74 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~---~v~VIsmD 74 (636)
..++|++.|..|||||||...+...++ .+.++..|
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~ 58 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGD 58 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 356889999999999999999988754 24455544
No 451
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.50 E-value=0.061 Score=53.51 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~~~ 56 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 452
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.50 E-value=0.059 Score=55.73 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 466999999999999999999998874
No 453
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.50 E-value=0.059 Score=55.89 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 454
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.47 E-value=0.075 Score=60.41 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...++|.|+|||||||+++.|...+.
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 467899999999999999999999875
No 455
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.47 E-value=0.062 Score=55.49 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999997653
No 456
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.46 E-value=0.07 Score=50.26 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=23.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346999999999999999999987653
No 457
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.068 Score=55.23 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 46699999999999999999999764
No 458
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.45 E-value=0.063 Score=53.44 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998764
No 459
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.43 E-value=0.071 Score=54.97 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 46799999999999999999999875
No 460
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.41 E-value=0.065 Score=55.35 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46699999999999999999999764
No 461
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.075 Score=54.39 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 466999999999999999999998753
No 462
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.39 E-value=0.062 Score=54.21 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 35689999999999999999999863
No 463
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.38 E-value=0.069 Score=52.48 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999999876
No 464
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.38 E-value=0.074 Score=48.01 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..|++.|++|||||||.+.|...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998754
No 465
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.36 E-value=0.056 Score=55.61 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L 65 (636)
-+.+.||+|+||||+|+.+++.+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999875
No 466
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.35 E-value=0.087 Score=54.54 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=27.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmD 74 (636)
..++.|+|++|+||||||..++... + .+.+++++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 6799999999999999999986642 1 46677776
No 467
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.35 E-value=0.08 Score=58.81 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=24.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
++..-|.+.||+|+|||++|+.|+..++
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4456789999999999999999999874
No 468
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.34 E-value=0.068 Score=57.33 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+.|+|.|++|||||||++.|+..++
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4789999999999999999999884
No 469
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.069 Score=53.66 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357999999999999999999998865
No 470
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.33 E-value=0.17 Score=54.19 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh--CC--------CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF--MP--------SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~--L~--------~v~VIsmDd 75 (636)
..++-|.|++|||||+||..++-. +| .+.+|+++.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 678999999999999999988742 22 366777765
No 471
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.31 E-value=0.069 Score=55.64 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=23.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||.+.|+..++
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcccC
Confidence 56999999999999999999998763
No 472
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=93.30 E-value=0.071 Score=59.75 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMD 74 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmD 74 (636)
++|+|+|.+|||||||+.+|...|. .|.+|-.|
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 5899999999999999999998874 35555554
No 473
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.30 E-value=0.072 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999998763
No 474
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.30 E-value=0.11 Score=53.67 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=23.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC-CcEEEEc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP-SIAVITM 73 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~-~v~VIsm 73 (636)
+...||+|.||||||+.|++.++ .+..++.
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 57799999999999999999996 3444443
No 475
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.29 E-value=0.073 Score=52.47 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|.|++|||||||.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999999875
No 476
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.29 E-value=0.067 Score=57.23 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||++.|...++
T Consensus 33 Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 56899999999999999999998763
No 477
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.29 E-value=0.071 Score=54.41 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||++.|...+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999999765
No 478
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.26 E-value=0.06 Score=61.53 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEE
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVI 71 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VI 71 (636)
...+.+|..|+||+|+||||..+.|++.++ +.++
T Consensus 106 ~~l~~~iLLltGPsGcGKSTtvkvLskelg-~~~~ 139 (634)
T KOG1970|consen 106 PKLGSRILLLTGPSGCGKSTTVKVLSKELG-YQLI 139 (634)
T ss_pred cCCCceEEEEeCCCCCCchhHHHHHHHhhC-ceee
Confidence 345678999999999999999999999994 4444
No 479
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.24 E-value=0.076 Score=60.31 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.-.++|-||||||||||++.|.-..+
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~ 387 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWP 387 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccc
Confidence 45799999999999999999998865
No 480
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.24 E-value=0.093 Score=56.41 Aligned_cols=37 Identities=19% Similarity=0.512 Sum_probs=29.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC---CcEEEEccc
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP---SIAVITMDN 75 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~---~v~VIsmDd 75 (636)
.++=+|.++||+||||||.-..+.++++ ...+|..+|
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIED 162 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIED 162 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecC
Confidence 3566999999999999998888888775 356777776
No 481
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.23 E-value=0.067 Score=56.28 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 482
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.22 E-value=0.069 Score=57.21 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|+||||||||++.|...++
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Confidence 356999999999999999999998764
No 483
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.22 E-value=0.091 Score=52.44 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=27.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDd 75 (636)
..++.|.|++|||||+||..+.... + +|.+++++.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 5699999999999999999866432 2 577787764
No 484
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.22 E-value=0.075 Score=53.80 Aligned_cols=26 Identities=35% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35689999999999999999999875
No 485
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.063 Score=55.18 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356999999999999999999998764
No 486
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.21 E-value=0.067 Score=54.53 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=23.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~ 47 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAGLLP 47 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356999999999999999999987654
No 487
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.20 E-value=0.072 Score=55.26 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 367999999999999999999998764
No 488
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.076 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 46799999999999999999999654
No 489
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.17 E-value=0.071 Score=54.95 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 490
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.17 E-value=0.094 Score=52.09 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=24.1
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..++..+++|.|++|||||||.+.|.-.++
T Consensus 18 l~~~~g~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 18 IPFPPGLTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHHHHhc
Confidence 344434899999999999999999986653
No 491
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.16 E-value=0.068 Score=54.49 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 467999999999999999999998764
No 492
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.16 E-value=0.073 Score=56.92 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|+||||||||++.|...+
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 35689999999999999999999875
No 493
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.16 E-value=0.078 Score=54.27 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccC
Confidence 466999999999999999999998764
No 494
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.14 E-value=0.077 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|+..+
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 36699999999999999999999654
No 495
>PRK10436 hypothetical protein; Provisional
Probab=93.12 E-value=0.15 Score=57.61 Aligned_cols=54 Identities=22% Similarity=0.395 Sum_probs=36.0
Q ss_pred CCcchHHHHHHHHhhcCCCceEecCCCeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEccc
Q 006667 15 RPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDN 75 (636)
Q Consensus 15 ~~~ll~~ql~~~~r~~~~~~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDd 75 (636)
..|+..+++..+.+. ..-+.-+|.|+||+||||||+...+.+.+. +..+++.++
T Consensus 199 ~LG~~~~~~~~l~~~-------~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiED 254 (462)
T PRK10436 199 TLGMTPAQLAQFRQA-------LQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVED 254 (462)
T ss_pred HcCcCHHHHHHHHHH-------HHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecC
Confidence 356666666554432 223455899999999999998877666653 355677665
No 496
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.11 E-value=0.071 Score=57.36 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 356999999999999999999998864
No 497
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.10 E-value=0.077 Score=54.42 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 466999999999999999999998754
No 498
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.09 E-value=0.096 Score=53.00 Aligned_cols=36 Identities=44% Similarity=0.526 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC---CcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP---SIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~---~v~VIsmDdY~ 77 (636)
..|++.||.|||||+|..++.+.+. .+.||.-|-|.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 5788899999999999888777653 57888888875
No 499
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.09 E-value=0.076 Score=55.42 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 500
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.08 E-value=0.11 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..++.|.|++|||||++|..++..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHH
Confidence 569999999999999999999875
Done!