Query 006667
Match_columns 636
No_of_seqs 313 out of 1766
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.9 1.2E-26 4.1E-31 242.8 16.6 174 42-215 93-308 (321)
2 1uj2_A Uridine-cytidine kinase 99.9 3.5E-24 1.2E-28 213.1 15.1 194 41-246 22-233 (252)
3 1a7j_A Phosphoribulokinase; tr 99.9 7.1E-25 2.4E-29 225.1 8.8 169 41-210 5-204 (290)
4 1sq5_A Pantothenate kinase; P- 99.9 3.7E-23 1.3E-27 213.0 16.5 177 40-216 79-297 (308)
5 3asz_A Uridine kinase; cytidin 99.9 1.1E-22 3.8E-27 194.9 15.2 194 41-246 6-207 (211)
6 2ga8_A Hypothetical 39.9 kDa p 99.9 8.1E-23 2.8E-27 216.8 13.9 144 68-214 156-350 (359)
7 3c8u_A Fructokinase; YP_612366 99.9 4.4E-22 1.5E-26 192.3 14.6 171 40-213 21-206 (208)
8 1odf_A YGR205W, hypothetical 3 99.9 9.8E-22 3.4E-26 202.3 15.3 172 41-214 31-275 (290)
9 3aez_A Pantothenate kinase; tr 99.9 2.6E-21 8.9E-26 201.0 15.9 177 40-216 89-300 (312)
10 2jeo_A Uridine-cytidine kinase 99.9 4.4E-21 1.5E-25 190.0 16.7 193 41-246 25-235 (245)
11 1rz3_A Hypothetical protein rb 99.8 9.1E-21 3.1E-25 182.5 8.5 167 40-215 21-200 (201)
12 2een_A Hypothetical protein PH 99.8 1.1E-18 3.7E-23 167.7 14.3 148 238-390 12-179 (183)
13 3ghx_A Adenylate cyclase CYAB; 99.8 1.7E-18 5.8E-23 167.2 14.9 139 237-384 20-177 (179)
14 1yem_A Hypothetical protein; s 99.8 1.9E-18 6.4E-23 167.0 14.0 143 236-389 18-175 (179)
15 3n10_A Adenylate cyclase 2; CY 99.7 1.6E-16 5.4E-21 152.2 15.6 138 238-384 21-177 (179)
16 2dc4_A PH1012 protein, 165AA l 99.7 3.7E-16 1.3E-20 147.5 14.9 138 237-384 11-163 (165)
17 2qt1_A Nicotinamide riboside k 99.6 8.3E-16 2.8E-20 147.2 9.2 160 41-215 21-189 (207)
18 2aca_A Putative adenylate cycl 99.6 2.3E-15 7.9E-20 146.0 11.0 143 237-387 22-181 (189)
19 2grj_A Dephospho-COA kinase; T 99.6 1.1E-15 3.7E-20 148.5 4.1 145 42-216 13-171 (192)
20 2f6r_A COA synthase, bifunctio 99.5 7.2E-15 2.4E-19 149.6 6.7 163 40-216 74-253 (281)
21 3d3q_A TRNA delta(2)-isopenten 99.5 2.1E-15 7.2E-20 159.2 1.5 152 42-204 8-164 (340)
22 4i1u_A Dephospho-COA kinase; s 99.4 2E-13 6.7E-18 135.4 7.0 156 43-215 11-184 (210)
23 1cke_A CK, MSSA, protein (cyti 99.3 2.9E-12 1E-16 123.3 11.1 166 42-215 6-205 (227)
24 2if2_A Dephospho-COA kinase; a 99.3 4.5E-13 1.5E-17 127.4 4.3 172 42-246 2-191 (204)
25 1jjv_A Dephospho-COA kinase; P 99.3 3.3E-13 1.1E-17 128.8 3.3 158 42-216 3-177 (206)
26 1vht_A Dephospho-COA kinase; s 99.3 1.3E-11 4.3E-16 119.1 10.4 159 41-216 4-179 (218)
27 3lw7_A Adenylate kinase relate 99.3 4.3E-12 1.5E-16 115.1 6.3 155 42-216 2-161 (179)
28 1q3t_A Cytidylate kinase; nucl 99.2 2.1E-11 7.2E-16 119.7 11.0 168 40-215 15-217 (236)
29 3ake_A Cytidylate kinase; CMP 99.2 1.5E-11 5.2E-16 116.3 9.5 156 43-215 4-191 (208)
30 1uf9_A TT1252 protein; P-loop, 99.2 2.2E-12 7.6E-17 121.6 3.6 159 40-215 7-177 (203)
31 4e22_A Cytidylate kinase; P-lo 99.2 7.4E-11 2.5E-15 117.8 12.5 174 40-215 26-227 (252)
32 3bhd_A Thtpase, thiamine triph 99.2 1.4E-10 4.9E-15 116.0 13.0 132 253-391 52-222 (234)
33 2h92_A Cytidylate kinase; ross 99.1 5.4E-11 1.8E-15 114.3 7.9 162 42-215 4-200 (219)
34 3r20_A Cytidylate kinase; stru 99.1 5.3E-10 1.8E-14 112.2 12.2 168 41-213 9-208 (233)
35 3t61_A Gluconokinase; PSI-biol 99.0 8.1E-10 2.8E-14 105.2 8.9 153 41-246 18-179 (202)
36 1tev_A UMP-CMP kinase; ploop, 99.0 1.8E-10 6E-15 107.2 3.1 159 41-214 3-177 (196)
37 1ukz_A Uridylate kinase; trans 99.0 4.6E-09 1.6E-13 99.7 12.6 139 34-200 8-173 (203)
38 1qf9_A UMP/CMP kinase, protein 98.9 3.3E-09 1.1E-13 98.5 8.7 36 41-77 6-41 (194)
39 2qor_A Guanylate kinase; phosp 98.9 6.1E-09 2.1E-13 99.8 10.7 157 41-215 12-181 (204)
40 2vp4_A Deoxynucleoside kinase; 98.9 4.5E-11 1.6E-15 117.3 -4.8 167 40-214 19-207 (230)
41 2jaq_A Deoxyguanosine kinase; 98.8 9.2E-10 3.2E-14 103.3 3.0 165 43-215 2-184 (205)
42 2bwj_A Adenylate kinase 5; pho 98.8 1.7E-09 6E-14 101.4 3.9 117 42-174 13-137 (199)
43 3kb2_A SPBC2 prophage-derived 98.8 1.4E-08 4.8E-13 92.7 9.8 148 42-215 2-149 (173)
44 3tj7_A GBAA_1210 protein; stru 98.8 5.1E-08 1.7E-12 95.5 13.9 118 252-375 33-178 (195)
45 2gfg_A BH2851; antiparallel ba 98.8 1.2E-07 4.2E-12 92.0 15.7 123 255-384 36-186 (193)
46 3a00_A Guanylate kinase, GMP k 98.8 1.3E-08 4.5E-13 96.3 8.2 161 42-215 2-169 (186)
47 3v85_A CYTH-like phosphatase; 98.7 5.3E-08 1.8E-12 95.2 11.2 123 252-375 29-195 (210)
48 2j41_A Guanylate kinase; GMP, 98.7 4.2E-08 1.4E-12 92.5 8.6 154 41-215 6-171 (207)
49 2pt5_A Shikimate kinase, SK; a 98.7 2.2E-09 7.4E-14 98.5 -0.3 34 43-77 2-35 (168)
50 1ex7_A Guanylate kinase; subst 98.7 3.1E-08 1.1E-12 96.1 7.7 159 42-215 2-169 (186)
51 2cdn_A Adenylate kinase; phosp 98.7 3.5E-08 1.2E-12 93.8 7.6 36 41-77 20-55 (201)
52 3fb4_A Adenylate kinase; psych 98.7 7.8E-09 2.7E-13 99.0 3.0 35 43-78 2-36 (216)
53 3vaa_A Shikimate kinase, SK; s 98.6 3.6E-08 1.2E-12 94.1 7.4 36 41-77 25-60 (199)
54 3trf_A Shikimate kinase, SK; a 98.6 9.4E-09 3.2E-13 95.9 3.3 36 41-77 5-40 (185)
55 3dl0_A Adenylate kinase; phosp 98.6 1.9E-08 6.4E-13 96.5 5.3 35 43-78 2-36 (216)
56 1kgd_A CASK, peripheral plasma 98.6 5E-08 1.7E-12 91.9 8.0 153 38-215 2-163 (180)
57 1kht_A Adenylate kinase; phosp 98.6 2.5E-08 8.4E-13 92.6 5.8 37 41-77 3-43 (192)
58 3tr0_A Guanylate kinase, GMP k 98.6 7E-08 2.4E-12 91.0 8.8 26 41-66 7-32 (205)
59 1knq_A Gluconate kinase; ALFA/ 98.6 1.6E-07 5.6E-12 86.9 10.8 38 40-78 7-44 (175)
60 1y63_A LMAJ004144AAA protein; 98.6 1.3E-07 4.5E-12 89.2 9.8 40 38-78 7-47 (184)
61 4eun_A Thermoresistant glucoki 98.6 1.5E-07 5E-12 89.9 9.7 38 40-78 28-65 (200)
62 2iyv_A Shikimate kinase, SK; t 98.6 1.4E-08 4.9E-13 94.8 2.5 36 42-78 3-38 (184)
63 2c95_A Adenylate kinase 1; tra 98.6 7E-08 2.4E-12 90.2 7.1 37 41-78 9-45 (196)
64 1e6c_A Shikimate kinase; phosp 98.6 3.7E-08 1.3E-12 90.5 4.4 35 42-77 3-37 (173)
65 1zuh_A Shikimate kinase; alpha 98.5 4.1E-08 1.4E-12 90.5 4.6 35 42-77 8-42 (168)
66 1nks_A Adenylate kinase; therm 98.5 2.2E-07 7.6E-12 86.1 7.9 36 42-77 2-41 (194)
67 2rhm_A Putative kinase; P-loop 98.5 1.4E-07 4.8E-12 87.9 6.1 36 41-77 5-40 (193)
68 2pbr_A DTMP kinase, thymidylat 98.4 2.7E-07 9.2E-12 85.8 7.1 33 43-75 2-36 (195)
69 3tlx_A Adenylate kinase 2; str 98.4 9E-08 3.1E-12 95.0 3.7 37 40-77 28-64 (243)
70 3iij_A Coilin-interacting nucl 98.4 4.1E-07 1.4E-11 84.7 7.7 36 41-77 11-46 (180)
71 1ly1_A Polynucleotide kinase; 98.4 1.8E-07 6.1E-12 86.0 5.1 35 42-77 3-38 (181)
72 3cm0_A Adenylate kinase; ATP-b 98.4 2.2E-07 7.5E-12 86.5 5.2 36 41-77 4-39 (186)
73 3fdi_A Uncharacterized protein 98.4 2.1E-06 7.2E-11 83.3 11.7 33 41-74 6-38 (201)
74 1ltq_A Polynucleotide kinase; 98.3 7.3E-07 2.5E-11 89.6 8.3 36 42-77 3-38 (301)
75 3tau_A Guanylate kinase, GMP k 98.3 3.1E-07 1.1E-11 88.6 5.4 160 40-215 7-173 (208)
76 1kag_A SKI, shikimate kinase I 98.3 1.1E-07 3.7E-12 87.6 1.9 35 42-77 5-39 (173)
77 1via_A Shikimate kinase; struc 98.3 1.7E-07 5.8E-12 87.1 3.1 35 43-78 6-40 (175)
78 2plr_A DTMP kinase, probable t 98.3 2.2E-06 7.6E-11 80.6 10.1 26 41-66 4-29 (213)
79 1zd8_A GTP:AMP phosphotransfer 98.3 5.5E-07 1.9E-11 87.4 5.5 36 42-78 8-43 (227)
80 2ze6_A Isopentenyl transferase 98.3 2.6E-06 9E-11 85.1 10.4 35 42-77 2-36 (253)
81 3a4m_A L-seryl-tRNA(SEC) kinas 98.3 3.1E-06 1.1E-10 84.5 10.5 37 41-77 4-44 (260)
82 3hdt_A Putative kinase; struct 98.3 4E-07 1.4E-11 90.4 3.9 37 40-77 13-49 (223)
83 2vli_A Antibiotic resistance p 98.2 3.6E-06 1.2E-10 77.8 9.8 31 40-71 4-34 (183)
84 2wwf_A Thymidilate kinase, put 98.2 1.2E-06 4E-11 83.1 5.9 26 41-66 10-35 (212)
85 1qhx_A CPT, protein (chloramph 98.2 3.8E-06 1.3E-10 77.5 9.1 37 41-77 3-40 (178)
86 1aky_A Adenylate kinase; ATP:A 98.2 2.7E-06 9.3E-11 81.9 8.4 36 42-78 5-40 (220)
87 2ocp_A DGK, deoxyguanosine kin 98.2 1.5E-07 5.1E-12 92.3 -0.5 31 41-71 2-32 (241)
88 3lnc_A Guanylate kinase, GMP k 98.2 1.5E-06 5.3E-11 84.4 6.6 26 41-66 27-53 (231)
89 2pez_A Bifunctional 3'-phospho 98.2 2.1E-06 7.2E-11 80.0 6.7 36 40-75 4-41 (179)
90 3nwj_A ATSK2; P loop, shikimat 98.1 8.2E-07 2.8E-11 89.6 3.4 36 41-77 48-83 (250)
91 2xb4_A Adenylate kinase; ATP-b 98.1 3.7E-06 1.3E-10 81.9 7.6 35 43-78 2-36 (223)
92 3be4_A Adenylate kinase; malar 98.1 4.4E-06 1.5E-10 80.8 7.9 36 42-78 6-41 (217)
93 2z0h_A DTMP kinase, thymidylat 98.1 5.2E-06 1.8E-10 77.5 8.0 33 43-75 2-36 (197)
94 1zak_A Adenylate kinase; ATP:A 98.1 6.5E-07 2.2E-11 86.4 1.9 36 42-78 6-41 (222)
95 1nn5_A Similar to deoxythymidy 98.1 3.1E-06 1.1E-10 80.1 6.4 26 41-66 9-34 (215)
96 1e4v_A Adenylate kinase; trans 98.1 9.1E-06 3.1E-10 78.1 9.6 35 43-78 2-36 (214)
97 1ak2_A Adenylate kinase isoenz 98.1 8.3E-06 2.8E-10 79.7 8.9 36 41-77 16-51 (233)
98 1z6g_A Guanylate kinase; struc 98.1 1E-05 3.5E-10 78.8 9.5 160 41-215 23-192 (218)
99 3umf_A Adenylate kinase; rossm 98.1 4.3E-06 1.5E-10 82.9 6.8 37 40-77 28-64 (217)
100 2yvu_A Probable adenylyl-sulfa 98.0 1.5E-05 5.2E-10 74.6 9.2 38 40-77 12-53 (186)
101 3zvl_A Bifunctional polynucleo 98.0 1.5E-05 5.1E-10 85.5 10.2 111 40-193 257-379 (416)
102 3ney_A 55 kDa erythrocyte memb 98.0 2.7E-05 9.1E-10 76.3 10.6 128 31-163 9-141 (197)
103 1m7g_A Adenylylsulfate kinase; 98.0 5.8E-06 2E-10 79.4 5.3 37 41-77 25-66 (211)
104 2fbl_A Hypothetical protein NE 97.9 1.7E-05 5.8E-10 75.0 7.8 92 255-360 25-122 (153)
105 3exa_A TRNA delta(2)-isopenten 97.9 4E-05 1.4E-09 80.5 11.3 35 41-76 3-37 (322)
106 3a8t_A Adenylate isopentenyltr 97.9 4.2E-05 1.4E-09 80.9 10.8 34 42-76 41-74 (339)
107 4eaq_A DTMP kinase, thymidylat 97.8 3.6E-05 1.2E-09 75.9 8.6 34 40-73 25-59 (229)
108 3sr0_A Adenylate kinase; phosp 97.8 1.9E-05 6.6E-10 77.3 5.6 35 43-78 2-36 (206)
109 3uie_A Adenylyl-sulfate kinase 97.7 2.8E-05 9.6E-10 74.0 5.7 39 40-78 24-66 (200)
110 2axn_A 6-phosphofructo-2-kinas 97.7 4.9E-05 1.7E-09 84.1 8.4 37 41-77 35-75 (520)
111 3foz_A TRNA delta(2)-isopenten 97.7 0.00021 7.3E-09 74.8 12.1 35 41-76 10-44 (316)
112 2gks_A Bifunctional SAT/APS ki 97.7 1.9E-05 6.3E-10 88.1 3.9 36 41-76 372-411 (546)
113 3crm_A TRNA delta(2)-isopenten 97.6 0.00015 5E-09 76.2 9.5 34 42-76 6-39 (323)
114 1s96_A Guanylate kinase, GMP k 97.6 0.00016 5.3E-09 71.3 8.7 26 41-66 16-41 (219)
115 3gmt_A Adenylate kinase; ssgci 97.6 6.5E-05 2.2E-09 75.4 5.8 35 43-78 10-44 (230)
116 1x6v_B Bifunctional 3'-phospho 97.5 9E-05 3.1E-09 84.1 7.1 35 40-74 51-87 (630)
117 1lvg_A Guanylate kinase, GMP k 97.5 0.00034 1.2E-08 67.0 10.0 26 41-66 4-29 (198)
118 4hlc_A DTMP kinase, thymidylat 97.5 0.00028 9.5E-09 68.8 8.7 25 42-66 3-27 (205)
119 3ch4_B Pmkase, phosphomevalona 97.4 0.00016 5.4E-09 71.4 6.5 38 38-75 8-47 (202)
120 3ld9_A DTMP kinase, thymidylat 97.4 5.5E-05 1.9E-09 75.3 2.2 28 39-66 19-46 (223)
121 2v54_A DTMP kinase, thymidylat 97.3 0.00013 4.3E-09 68.6 4.4 36 41-76 4-39 (204)
122 1gvn_B Zeta; postsegregational 97.3 0.00011 3.8E-09 74.9 4.2 39 40-78 32-71 (287)
123 3eph_A TRNA isopentenyltransfe 97.3 0.00014 4.9E-09 78.6 4.7 35 40-75 1-35 (409)
124 1m8p_A Sulfate adenylyltransfe 97.2 0.00019 6.6E-09 80.4 5.2 37 41-77 396-437 (573)
125 4tmk_A Protein (thymidylate ki 97.2 0.00022 7.4E-09 70.2 4.2 26 41-66 3-28 (213)
126 1zp6_A Hypothetical protein AT 97.2 0.00018 6E-09 67.0 3.3 36 41-76 9-45 (191)
127 3lv8_A DTMP kinase, thymidylat 97.1 0.00014 4.8E-09 72.8 2.2 28 39-66 25-52 (236)
128 2p5t_B PEZT; postsegregational 97.1 0.00028 9.7E-09 69.9 4.2 38 41-78 32-70 (253)
129 2bdt_A BH3686; alpha-beta prot 97.1 0.00034 1.2E-08 65.4 4.2 37 42-78 3-39 (189)
130 3hjn_A DTMP kinase, thymidylat 97.1 0.00032 1.1E-08 67.8 3.9 31 43-73 2-34 (197)
131 2bbw_A Adenylate kinase 4, AK4 96.6 0.00082 2.8E-08 65.9 2.8 35 41-76 27-61 (246)
132 1bif_A 6-phosphofructo-2-kinas 96.6 0.0034 1.1E-07 68.0 7.7 37 41-77 39-79 (469)
133 2qmh_A HPR kinase/phosphorylas 96.5 0.0017 5.8E-08 64.3 4.3 39 36-76 29-67 (205)
134 4gp7_A Metallophosphoesterase; 96.4 0.0017 5.9E-08 60.5 3.8 33 41-76 9-41 (171)
135 1gtv_A TMK, thymidylate kinase 96.4 0.00061 2.1E-08 64.3 0.6 25 42-66 1-25 (214)
136 1p5z_B DCK, deoxycytidine kina 96.3 0.0016 5.6E-08 64.5 2.8 32 41-72 24-55 (263)
137 1znw_A Guanylate kinase, GMP k 96.2 0.0029 1E-07 60.4 4.2 27 41-67 20-46 (207)
138 1xjc_A MOBB protein homolog; s 96.1 0.0032 1.1E-07 60.2 3.8 33 42-74 5-41 (169)
139 1vma_A Cell division protein F 96.1 0.0056 1.9E-07 63.4 5.7 38 40-77 103-144 (306)
140 1dek_A Deoxynucleoside monopho 96.0 0.004 1.4E-07 62.6 4.0 33 42-75 2-34 (241)
141 3kl4_A SRP54, signal recogniti 95.9 0.0072 2.5E-07 65.7 5.6 38 40-77 96-137 (433)
142 2ehv_A Hypothetical protein PH 95.9 0.0086 2.9E-07 57.4 5.6 22 41-62 30-51 (251)
143 3dm5_A SRP54, signal recogniti 95.7 0.01 3.5E-07 64.8 6.0 39 40-78 99-141 (443)
144 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0067 2.3E-07 57.2 4.1 25 41-65 23-47 (235)
145 1zu4_A FTSY; GTPase, signal re 95.7 0.011 3.8E-07 61.4 6.0 37 40-76 104-144 (320)
146 4a74_A DNA repair and recombin 95.6 0.007 2.4E-07 57.3 3.7 25 41-65 25-49 (231)
147 1rj9_A FTSY, signal recognitio 95.6 0.0064 2.2E-07 62.8 3.7 38 40-77 101-142 (304)
148 3ec2_A DNA replication protein 95.6 0.0052 1.8E-07 56.9 2.7 25 41-65 38-62 (180)
149 3e70_C DPA, signal recognition 95.6 0.0081 2.8E-07 62.8 4.4 39 40-78 128-170 (328)
150 1np6_A Molybdopterin-guanine d 95.5 0.0076 2.6E-07 57.4 3.7 24 42-65 7-30 (174)
151 3b9q_A Chloroplast SRP recepto 95.5 0.0078 2.7E-07 62.0 4.0 38 40-77 99-140 (302)
152 2eyu_A Twitching motility prot 95.5 0.0075 2.5E-07 60.8 3.5 26 40-65 24-49 (261)
153 1jbk_A CLPB protein; beta barr 95.4 0.013 4.3E-07 52.7 4.7 24 42-65 44-67 (195)
154 1htw_A HI0065; nucleotide-bind 95.4 0.01 3.6E-07 55.5 4.2 27 40-66 32-58 (158)
155 1ye8_A Protein THEP1, hypothet 95.4 0.0073 2.5E-07 57.3 3.2 24 43-66 2-25 (178)
156 2og2_A Putative signal recogni 95.4 0.014 4.8E-07 61.9 5.6 38 40-77 156-197 (359)
157 3bos_A Putative DNA replicatio 95.3 0.01 3.5E-07 56.0 3.9 36 41-76 52-91 (242)
158 2yhs_A FTSY, cell division pro 95.3 0.015 5E-07 64.6 5.6 38 40-77 292-333 (503)
159 2v3c_C SRP54, signal recogniti 95.3 0.0087 3E-07 64.8 3.8 38 40-77 98-139 (432)
160 4edh_A DTMP kinase, thymidylat 95.3 0.01 3.4E-07 58.1 3.7 34 40-73 5-40 (213)
161 2px0_A Flagellar biosynthesis 95.3 0.0093 3.2E-07 61.2 3.6 38 40-77 104-146 (296)
162 3pfi_A Holliday junction ATP-d 95.2 0.053 1.8E-06 54.9 9.0 33 42-74 56-89 (338)
163 1c9k_A COBU, adenosylcobinamid 95.2 0.0068 2.3E-07 58.6 2.2 22 43-64 1-22 (180)
164 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.016 5.4E-07 56.2 4.8 36 41-76 39-75 (262)
165 2gza_A Type IV secretion syste 95.2 0.0088 3E-07 62.9 3.2 27 40-66 174-200 (361)
166 3tif_A Uncharacterized ABC tra 95.2 0.0084 2.9E-07 59.3 2.9 27 40-66 30-56 (235)
167 3b9p_A CG5977-PA, isoform A; A 95.1 0.017 5.9E-07 57.5 5.0 33 40-73 53-85 (297)
168 2p65_A Hypothetical protein PF 95.1 0.014 4.6E-07 52.8 3.8 24 42-65 44-67 (187)
169 2f1r_A Molybdopterin-guanine d 95.1 0.0052 1.8E-07 58.4 1.0 25 42-66 3-27 (171)
170 3cf0_A Transitional endoplasmi 95.1 0.018 6.3E-07 58.3 5.1 33 41-74 49-81 (301)
171 1lv7_A FTSH; alpha/beta domain 95.1 0.013 4.3E-07 57.4 3.8 24 43-66 47-70 (257)
172 2cvh_A DNA repair and recombin 95.1 0.012 4.2E-07 55.3 3.6 35 41-75 20-55 (220)
173 1g8f_A Sulfate adenylyltransfe 95.1 0.013 4.3E-07 65.1 4.1 26 41-66 395-420 (511)
174 2j37_W Signal recognition part 95.0 0.021 7.2E-07 63.2 5.8 39 39-77 99-141 (504)
175 3t15_A Ribulose bisphosphate c 95.0 0.015 5E-07 59.1 4.2 35 41-75 36-71 (293)
176 3h4m_A Proteasome-activating n 94.9 0.02 6.9E-07 56.5 4.8 26 41-66 51-76 (285)
177 2dr3_A UPF0273 protein PH0284; 94.9 0.015 5E-07 55.6 3.6 35 41-75 23-61 (247)
178 2cbz_A Multidrug resistance-as 94.9 0.013 4.4E-07 58.1 3.1 27 40-66 30-56 (237)
179 2pcj_A ABC transporter, lipopr 94.9 0.011 3.8E-07 58.0 2.7 27 40-66 29-55 (224)
180 1mv5_A LMRA, multidrug resista 94.8 0.013 4.4E-07 58.1 3.1 27 40-66 27-53 (243)
181 1ixz_A ATP-dependent metallopr 94.8 0.021 7.1E-07 55.8 4.3 23 44-66 52-74 (254)
182 3jvv_A Twitching mobility prot 94.8 0.018 6.2E-07 60.8 4.2 27 40-66 122-148 (356)
183 2pze_A Cystic fibrosis transme 94.7 0.013 4.6E-07 57.6 2.9 27 40-66 33-59 (229)
184 1n0w_A DNA repair protein RAD5 94.7 0.018 6E-07 55.1 3.6 24 41-64 24-47 (243)
185 3hws_A ATP-dependent CLP prote 94.7 0.021 7.2E-07 59.1 4.5 35 39-74 49-83 (363)
186 2x8a_A Nuclear valosin-contain 94.7 0.024 8.1E-07 57.2 4.7 30 44-74 47-76 (274)
187 2ff7_A Alpha-hemolysin translo 94.7 0.014 4.6E-07 58.4 2.9 27 40-66 34-60 (247)
188 4g1u_C Hemin import ATP-bindin 94.7 0.015 5.1E-07 58.8 3.2 27 40-66 36-62 (266)
189 2d2e_A SUFC protein; ABC-ATPas 94.7 0.018 6.1E-07 57.4 3.7 25 40-64 28-52 (250)
190 1ofh_A ATP-dependent HSL prote 94.7 0.022 7.6E-07 56.3 4.3 36 41-76 50-86 (310)
191 3gfo_A Cobalt import ATP-bindi 94.6 0.014 4.8E-07 59.5 2.8 27 40-66 33-59 (275)
192 2kjq_A DNAA-related protein; s 94.6 0.015 5E-07 53.6 2.7 26 40-65 35-60 (149)
193 1kjw_A Postsynaptic density pr 94.6 0.068 2.3E-06 55.0 7.9 155 40-215 104-266 (295)
194 2v9p_A Replication protein E1; 94.6 0.016 5.4E-07 60.2 3.2 28 40-67 125-152 (305)
195 2xxa_A Signal recognition part 94.6 0.043 1.5E-06 59.4 6.7 38 40-77 99-141 (433)
196 1b0u_A Histidine permease; ABC 94.6 0.015 5.1E-07 58.5 2.9 27 40-66 31-57 (262)
197 1g6h_A High-affinity branched- 94.6 0.015 5.2E-07 58.1 2.9 27 40-66 32-58 (257)
198 2onk_A Molybdate/tungstate ABC 94.6 0.019 6.4E-07 57.2 3.5 25 42-66 25-49 (240)
199 2ghi_A Transport protein; mult 94.5 0.016 5.4E-07 58.3 2.9 27 40-66 45-71 (260)
200 1ji0_A ABC transporter; ATP bi 94.5 0.018 6.1E-07 57.1 3.1 27 40-66 31-57 (240)
201 2zu0_C Probable ATP-dependent 94.5 0.021 7.3E-07 57.5 3.7 25 40-64 45-69 (267)
202 2ixe_A Antigen peptide transpo 94.5 0.016 5.6E-07 58.6 2.9 27 40-66 44-70 (271)
203 1ls1_A Signal recognition part 94.4 0.027 9.1E-07 57.6 4.4 37 40-76 97-137 (295)
204 2ewv_A Twitching motility prot 94.4 0.02 6.8E-07 60.5 3.5 27 40-66 135-161 (372)
205 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.033 1.1E-06 57.3 5.1 33 40-72 44-76 (322)
206 1lw7_A Transcriptional regulat 94.4 0.024 8.2E-07 59.1 4.0 26 41-66 170-195 (365)
207 3cr8_A Sulfate adenylyltranfer 94.4 0.011 3.7E-07 66.1 1.4 38 40-77 368-410 (552)
208 1sgw_A Putative ABC transporte 94.4 0.015 5.3E-07 57.0 2.3 27 40-66 34-60 (214)
209 2olj_A Amino acid ABC transpor 94.4 0.018 6.2E-07 58.2 2.9 27 40-66 49-75 (263)
210 4fcw_A Chaperone protein CLPB; 94.3 0.026 8.7E-07 56.2 3.9 36 41-76 47-86 (311)
211 1iy2_A ATP-dependent metallopr 94.3 0.03 1E-06 55.7 4.3 23 44-66 76-98 (278)
212 1nij_A Hypothetical protein YJ 94.3 0.023 7.9E-07 58.4 3.6 33 42-74 5-39 (318)
213 2yz2_A Putative ABC transporte 94.3 0.019 6.4E-07 57.9 2.9 27 40-66 32-58 (266)
214 1njg_A DNA polymerase III subu 94.3 0.022 7.6E-07 52.8 3.2 25 42-66 46-70 (250)
215 1vpl_A ABC transporter, ATP-bi 94.3 0.021 7.2E-07 57.4 3.2 27 40-66 40-66 (256)
216 2i3b_A HCR-ntpase, human cance 94.3 0.019 6.5E-07 55.2 2.7 25 42-66 2-26 (189)
217 3b85_A Phosphate starvation-in 94.3 0.016 5.3E-07 56.6 2.1 24 41-64 22-45 (208)
218 3tqf_A HPR(Ser) kinase; transf 94.2 0.037 1.3E-06 53.8 4.6 37 37-75 12-48 (181)
219 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.015 5E-07 60.6 1.9 26 41-66 171-196 (330)
220 2nq2_C Hypothetical ABC transp 94.2 0.02 6.9E-07 57.3 2.9 27 40-66 30-56 (253)
221 1svm_A Large T antigen; AAA+ f 94.2 0.028 9.6E-07 59.9 4.1 31 41-72 169-199 (377)
222 2qi9_C Vitamin B12 import ATP- 94.2 0.021 7.1E-07 57.2 2.9 27 40-66 25-51 (249)
223 2ihy_A ABC transporter, ATP-bi 94.2 0.021 7.2E-07 58.2 2.9 27 40-66 46-72 (279)
224 3kta_A Chromosome segregation 94.2 0.041 1.4E-06 50.7 4.6 30 37-66 22-51 (182)
225 2w58_A DNAI, primosome compone 94.2 0.031 1E-06 52.4 3.8 24 42-65 55-78 (202)
226 2ffh_A Protein (FFH); SRP54, s 94.1 0.032 1.1E-06 60.5 4.4 37 40-76 97-137 (425)
227 1d2n_A N-ethylmaleimide-sensit 94.1 0.03 1E-06 55.3 3.8 26 41-66 64-89 (272)
228 3v9p_A DTMP kinase, thymidylat 94.1 0.02 6.9E-07 56.8 2.6 27 40-66 24-50 (227)
229 2oap_1 GSPE-2, type II secreti 94.1 0.021 7.3E-07 63.1 3.1 26 41-66 260-285 (511)
230 3nh6_A ATP-binding cassette SU 94.1 0.016 5.6E-07 60.0 1.9 27 40-66 79-105 (306)
231 1cr0_A DNA primase/helicase; R 94.1 0.024 8.3E-07 56.8 3.1 25 41-65 35-59 (296)
232 1pzn_A RAD51, DNA repair and r 94.0 0.039 1.3E-06 57.8 4.6 26 40-65 130-155 (349)
233 3tmk_A Thymidylate kinase; pho 94.0 0.026 8.8E-07 55.7 3.0 27 41-67 5-31 (216)
234 1l8q_A Chromosomal replication 94.0 0.026 8.8E-07 57.2 3.1 24 42-65 38-61 (324)
235 1p9r_A General secretion pathw 94.0 0.029 1E-06 60.5 3.7 27 40-66 166-192 (418)
236 3eie_A Vacuolar protein sortin 93.8 0.042 1.4E-06 56.1 4.4 32 40-72 50-81 (322)
237 1j8m_F SRP54, signal recogniti 93.7 0.034 1.2E-06 57.1 3.5 38 40-77 97-138 (297)
238 2chg_A Replication factor C sm 93.7 0.031 1.1E-06 51.4 2.9 22 44-65 41-62 (226)
239 1in4_A RUVB, holliday junction 93.7 0.028 9.4E-07 57.9 2.8 25 42-66 52-76 (334)
240 2qm8_A GTPase/ATPase; G protei 93.6 0.044 1.5E-06 57.1 4.1 36 41-76 55-94 (337)
241 3n70_A Transport activator; si 93.6 0.039 1.3E-06 49.7 3.3 23 43-65 26-48 (145)
242 1nlf_A Regulatory protein REPA 93.6 0.033 1.1E-06 55.5 3.1 26 40-65 29-54 (279)
243 1um8_A ATP-dependent CLP prote 93.6 0.048 1.6E-06 56.6 4.3 33 41-74 72-104 (376)
244 2bjv_A PSP operon transcriptio 93.5 0.062 2.1E-06 52.7 4.9 24 43-66 31-54 (265)
245 3p32_A Probable GTPase RV1496/ 93.5 0.047 1.6E-06 56.9 4.1 35 41-75 79-117 (355)
246 3d8b_A Fidgetin-like protein 1 93.5 0.062 2.1E-06 55.9 5.0 27 40-66 116-142 (357)
247 1sxj_A Activator 1 95 kDa subu 93.5 0.061 2.1E-06 58.9 5.1 33 41-74 77-109 (516)
248 2wsm_A Hydrogenase expression/ 93.3 0.057 2E-06 50.9 4.1 34 41-74 30-66 (221)
249 3tvt_A Disks large 1 tumor sup 93.3 0.089 3E-06 54.3 5.8 169 39-247 98-277 (292)
250 2bbs_A Cystic fibrosis transme 93.3 0.031 1E-06 57.4 2.3 27 40-66 63-89 (290)
251 3tui_C Methionine import ATP-b 93.3 0.045 1.6E-06 58.3 3.7 27 40-66 53-79 (366)
252 2pjz_A Hypothetical protein ST 93.3 0.038 1.3E-06 55.9 2.9 26 41-66 30-55 (263)
253 2www_A Methylmalonic aciduria 93.3 0.067 2.3E-06 55.9 4.9 36 41-76 74-113 (349)
254 1fnn_A CDC6P, cell division co 93.2 0.061 2.1E-06 54.8 4.4 24 43-66 46-69 (389)
255 3fvq_A Fe(3+) IONS import ATP- 93.2 0.042 1.4E-06 58.4 3.1 26 41-66 30-55 (359)
256 2r62_A Cell division protease 93.2 0.021 7.3E-07 55.9 0.9 23 44-66 47-69 (268)
257 2zan_A Vacuolar protein sortin 93.1 0.082 2.8E-06 56.9 5.3 34 40-73 166-199 (444)
258 1z47_A CYSA, putative ABC-tran 93.0 0.052 1.8E-06 57.5 3.7 27 40-66 40-66 (355)
259 2yyz_A Sugar ABC transporter, 93.0 0.053 1.8E-06 57.5 3.7 27 40-66 28-54 (359)
260 1yrb_A ATP(GTP)binding protein 93.0 0.085 2.9E-06 51.2 4.9 35 41-75 14-51 (262)
261 3vfd_A Spastin; ATPase, microt 93.0 0.084 2.9E-06 55.3 5.1 34 40-74 147-180 (389)
262 2it1_A 362AA long hypothetical 93.0 0.054 1.8E-06 57.5 3.7 27 40-66 28-54 (362)
263 3rlf_A Maltose/maltodextrin im 93.0 0.055 1.9E-06 57.9 3.7 26 41-66 29-54 (381)
264 3syl_A Protein CBBX; photosynt 92.9 0.047 1.6E-06 54.4 2.9 25 41-65 67-91 (309)
265 1v43_A Sugar-binding transport 92.9 0.057 1.9E-06 57.5 3.7 27 40-66 36-62 (372)
266 2z43_A DNA repair and recombin 92.9 0.072 2.5E-06 54.7 4.3 25 41-65 107-131 (324)
267 1g29_1 MALK, maltose transport 92.9 0.057 2E-06 57.4 3.7 27 40-66 28-54 (372)
268 3hr8_A Protein RECA; alpha and 92.8 0.06 2E-06 57.0 3.7 35 41-75 61-99 (356)
269 4b4t_K 26S protease regulatory 92.8 0.072 2.4E-06 57.8 4.4 33 41-74 206-238 (428)
270 2qp9_X Vacuolar protein sortin 92.8 0.064 2.2E-06 55.9 3.9 32 41-73 84-115 (355)
271 3u61_B DNA polymerase accessor 92.8 0.08 2.7E-06 53.4 4.4 32 42-74 49-80 (324)
272 1v5w_A DMC1, meiotic recombina 92.7 0.099 3.4E-06 54.3 5.2 24 41-64 122-145 (343)
273 3d31_A Sulfate/molybdate ABC t 92.7 0.048 1.6E-06 57.5 2.8 26 41-66 26-51 (348)
274 1hqc_A RUVB; extended AAA-ATPa 92.7 0.052 1.8E-06 54.3 2.9 25 42-66 39-63 (324)
275 2zts_A Putative uncharacterize 92.6 0.079 2.7E-06 50.5 4.0 35 41-75 30-69 (251)
276 2i1q_A DNA repair and recombin 92.6 0.077 2.7E-06 54.0 4.1 24 41-64 98-121 (322)
277 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.049 1.7E-06 59.5 2.8 27 40-66 137-163 (460)
278 2zr9_A Protein RECA, recombina 92.6 0.063 2.1E-06 56.4 3.5 35 41-75 61-99 (349)
279 2fna_A Conserved hypothetical 92.5 0.13 4.4E-06 51.4 5.6 34 42-75 31-65 (357)
280 4b4t_M 26S protease regulatory 92.5 0.084 2.9E-06 57.4 4.4 33 41-74 215-247 (434)
281 2qby_A CDC6 homolog 1, cell di 92.5 0.054 1.8E-06 54.7 2.8 25 41-65 45-69 (386)
282 4b4t_L 26S protease subunit RP 92.5 0.084 2.9E-06 57.5 4.4 33 41-74 215-247 (437)
283 2v1u_A Cell division control p 92.4 0.065 2.2E-06 54.3 3.3 26 40-65 43-68 (387)
284 4f4c_A Multidrug resistance pr 92.4 0.065 2.2E-06 65.5 3.8 27 40-66 1104-1130(1321)
285 3uk6_A RUVB-like 2; hexameric 92.4 0.06 2.1E-06 55.0 3.0 26 41-66 70-95 (368)
286 3sop_A Neuronal-specific septi 92.4 0.064 2.2E-06 54.2 3.1 23 43-65 4-26 (270)
287 1oxx_K GLCV, glucose, ABC tran 92.4 0.045 1.5E-06 57.7 2.1 26 41-66 31-56 (353)
288 3gd7_A Fusion complex of cysti 92.4 0.062 2.1E-06 57.6 3.1 27 40-66 46-72 (390)
289 3b5x_A Lipid A export ATP-bind 92.4 0.064 2.2E-06 59.7 3.4 27 40-66 368-394 (582)
290 2ged_A SR-beta, signal recogni 92.4 0.13 4.4E-06 47.1 4.9 49 13-64 23-71 (193)
291 2p67_A LAO/AO transport system 92.3 0.074 2.5E-06 55.2 3.6 37 40-76 55-95 (341)
292 3m6a_A ATP-dependent protease 92.3 0.077 2.6E-06 58.7 3.8 36 40-75 107-143 (543)
293 1g41_A Heat shock protein HSLU 92.2 0.094 3.2E-06 57.2 4.3 34 40-74 49-82 (444)
294 2xkx_A Disks large homolog 4; 92.0 0.37 1.3E-05 55.2 9.2 169 41-246 531-707 (721)
295 2c9o_A RUVB-like 1; hexameric 92.0 0.1 3.5E-06 56.1 4.3 34 41-74 63-97 (456)
296 2qby_B CDC6 homolog 3, cell di 91.9 0.099 3.4E-06 53.3 4.0 25 41-65 45-69 (384)
297 2dhr_A FTSH; AAA+ protein, hex 91.9 0.12 4.2E-06 57.0 4.9 29 44-73 67-95 (499)
298 3b60_A Lipid A export ATP-bind 91.9 0.062 2.1E-06 59.8 2.6 27 40-66 368-394 (582)
299 1u94_A RECA protein, recombina 91.9 0.099 3.4E-06 55.1 4.0 35 41-75 63-101 (356)
300 1p6x_A Thymidine kinase; P-loo 91.8 0.075 2.6E-06 55.9 3.0 25 42-66 8-32 (334)
301 4b4t_J 26S protease regulatory 91.7 0.098 3.4E-06 56.5 3.8 33 41-74 182-214 (405)
302 2z4s_A Chromosomal replication 91.6 0.082 2.8E-06 56.9 3.1 24 42-65 131-154 (440)
303 2yv5_A YJEQ protein; hydrolase 91.6 0.11 3.7E-06 53.2 3.8 25 41-66 165-189 (302)
304 2orw_A Thymidine kinase; TMTK, 91.6 0.088 3E-06 50.0 2.9 26 40-65 2-27 (184)
305 2hf9_A Probable hydrogenase ni 91.6 0.13 4.5E-06 48.6 4.1 34 41-74 38-74 (226)
306 3co5_A Putative two-component 91.5 0.036 1.2E-06 50.0 0.1 23 43-65 29-51 (143)
307 1tue_A Replication protein E1; 91.5 0.089 3.1E-06 52.3 2.9 32 41-73 58-89 (212)
308 4b4t_H 26S protease regulatory 91.5 0.12 4E-06 56.9 4.1 34 40-74 242-275 (467)
309 1sxj_E Activator 1 40 kDa subu 91.5 0.085 2.9E-06 53.6 2.8 21 44-64 39-59 (354)
310 1ko7_A HPR kinase/phosphatase; 91.4 0.15 5.1E-06 53.3 4.7 36 38-75 141-176 (314)
311 2wjg_A FEOB, ferrous iron tran 91.3 0.13 4.5E-06 46.7 3.7 25 40-64 6-30 (188)
312 3lda_A DNA repair protein RAD5 91.3 0.094 3.2E-06 56.3 3.1 24 41-64 178-201 (400)
313 1knx_A Probable HPR(Ser) kinas 91.2 0.12 4.3E-06 53.9 3.9 37 37-75 143-179 (312)
314 4a82_A Cystic fibrosis transme 91.2 0.056 1.9E-06 60.1 1.3 27 40-66 366-392 (578)
315 2yl4_A ATP-binding cassette SU 91.2 0.067 2.3E-06 59.6 1.9 27 40-66 369-395 (595)
316 3qf4_B Uncharacterized ABC tra 91.2 0.07 2.4E-06 59.7 2.1 27 40-66 380-406 (598)
317 1g8p_A Magnesium-chelatase 38 91.2 0.075 2.6E-06 53.6 2.1 23 44-66 48-70 (350)
318 3end_A Light-independent proto 91.2 0.14 4.8E-06 51.5 4.1 36 40-75 40-79 (307)
319 2ce7_A Cell division protein F 91.2 0.14 4.8E-06 56.2 4.4 29 43-72 51-79 (476)
320 2r44_A Uncharacterized protein 91.2 0.14 4.6E-06 51.9 4.0 24 43-66 48-71 (331)
321 2qen_A Walker-type ATPase; unk 91.1 0.16 5.4E-06 50.7 4.4 32 42-74 32-63 (350)
322 1sxj_D Activator 1 41 kDa subu 91.0 0.1 3.5E-06 52.6 2.9 22 44-65 61-82 (353)
323 3hu3_A Transitional endoplasmi 91.0 0.19 6.4E-06 55.2 5.1 32 41-73 238-269 (489)
324 1ypw_A Transitional endoplasmi 91.0 0.15 5.3E-06 59.1 4.7 33 41-74 238-270 (806)
325 1oix_A RAS-related protein RAB 91.0 0.12 4.1E-06 48.1 3.1 23 43-65 31-53 (191)
326 1sxj_C Activator 1 40 kDa subu 90.9 0.1 3.5E-06 53.3 2.8 22 44-65 49-70 (340)
327 1pui_A ENGB, probable GTP-bind 90.9 0.077 2.6E-06 49.4 1.7 25 40-64 25-49 (210)
328 1yqt_A RNAse L inhibitor; ATP- 90.9 0.12 4.3E-06 57.2 3.6 27 40-66 46-72 (538)
329 2f9l_A RAB11B, member RAS onco 90.8 0.13 4.6E-06 47.8 3.3 22 43-64 7-28 (199)
330 3qf4_A ABC transporter, ATP-bi 90.8 0.074 2.5E-06 59.4 1.8 27 40-66 368-394 (587)
331 1ojl_A Transcriptional regulat 90.8 0.2 6.8E-06 51.1 4.8 24 43-66 27-50 (304)
332 3pvs_A Replication-associated 90.8 0.18 6E-06 54.7 4.6 30 43-73 52-81 (447)
333 1z2a_A RAS-related protein RAB 90.8 0.14 4.9E-06 45.1 3.3 22 43-64 7-28 (168)
334 2dyk_A GTP-binding protein; GT 90.8 0.17 5.9E-06 44.3 3.8 22 43-64 3-24 (161)
335 1xp8_A RECA protein, recombina 90.7 0.32 1.1E-05 51.5 6.5 35 41-75 74-112 (366)
336 2wji_A Ferrous iron transport 90.7 0.16 5.5E-06 45.8 3.6 23 42-64 4-26 (165)
337 1e2k_A Thymidine kinase; trans 90.6 0.092 3.1E-06 55.2 2.2 25 42-66 5-29 (331)
338 1z6t_A APAF-1, apoptotic prote 90.6 0.24 8.2E-06 54.1 5.6 35 41-75 147-189 (591)
339 3ozx_A RNAse L inhibitor; ATP 90.6 0.12 4.1E-06 57.5 3.2 27 40-66 293-319 (538)
340 1f2t_A RAD50 ABC-ATPase; DNA d 90.6 0.2 6.8E-06 45.9 4.2 29 37-65 19-47 (149)
341 1of1_A Thymidine kinase; trans 90.6 0.094 3.2E-06 56.2 2.2 27 40-66 48-74 (376)
342 2r6a_A DNAB helicase, replicat 90.6 0.16 5.4E-06 54.7 4.0 35 41-75 203-242 (454)
343 1cp2_A CP2, nitrogenase iron p 90.5 0.15 5E-06 49.9 3.3 35 42-76 2-40 (269)
344 3kjh_A CO dehydrogenase/acetyl 90.4 0.14 4.9E-06 48.7 3.1 32 44-75 3-38 (254)
345 3euj_A Chromosome partition pr 90.3 0.14 4.7E-06 56.5 3.3 25 42-66 30-54 (483)
346 4b4t_I 26S protease regulatory 90.3 0.19 6.3E-06 54.9 4.3 37 37-74 211-248 (437)
347 2ce2_X GTPase HRAS; signaling 90.3 0.14 4.9E-06 44.6 2.8 22 43-64 5-26 (166)
348 2qgz_A Helicase loader, putati 90.2 0.18 6.1E-06 51.7 3.9 25 41-65 152-176 (308)
349 3bh0_A DNAB-like replicative h 90.2 0.18 6.3E-06 51.6 4.0 34 41-74 68-105 (315)
350 2rcn_A Probable GTPase ENGC; Y 90.2 0.16 5.5E-06 53.9 3.6 25 41-65 215-239 (358)
351 3ozx_A RNAse L inhibitor; ATP 90.2 0.15 5.2E-06 56.6 3.6 26 40-65 24-49 (538)
352 1u8z_A RAS-related protein RAL 90.2 0.21 7.3E-06 43.7 3.8 23 42-64 5-27 (168)
353 1yqt_A RNAse L inhibitor; ATP- 90.2 0.16 5.5E-06 56.3 3.7 27 40-66 311-337 (538)
354 1u0l_A Probable GTPase ENGC; p 90.1 0.16 5.5E-06 51.7 3.4 25 41-65 169-193 (301)
355 1ky3_A GTP-binding protein YPT 90.0 0.18 6.3E-06 45.0 3.4 22 43-64 10-31 (182)
356 1jr3_A DNA polymerase III subu 90.0 0.15 5.2E-06 51.7 3.1 24 43-66 40-63 (373)
357 2r2a_A Uncharacterized protein 90.0 0.21 7.1E-06 48.4 3.9 22 43-64 7-28 (199)
358 1tf7_A KAIC; homohexamer, hexa 90.0 0.14 4.9E-06 56.1 3.1 21 41-61 39-59 (525)
359 2dpy_A FLII, flagellum-specifi 89.9 0.24 8.2E-06 53.7 4.7 26 41-66 157-182 (438)
360 1kao_A RAP2A; GTP-binding prot 89.8 0.23 8E-06 43.4 3.8 23 42-64 4-26 (167)
361 2afh_E Nitrogenase iron protei 89.8 0.18 6E-06 50.3 3.3 35 42-76 3-41 (289)
362 1ek0_A Protein (GTP-binding pr 89.8 0.2 6.8E-06 44.1 3.3 22 43-64 5-26 (170)
363 1iqp_A RFCS; clamp loader, ext 89.7 0.19 6.5E-06 49.8 3.5 22 44-65 49-70 (327)
364 3cf2_A TER ATPase, transitiona 89.7 0.22 7.6E-06 58.1 4.5 34 40-74 237-270 (806)
365 3qf7_A RAD50; ABC-ATPase, ATPa 89.6 0.23 7.7E-06 52.2 4.2 28 38-65 20-47 (365)
366 3j16_B RLI1P; ribosome recycli 89.6 0.18 6.2E-06 56.9 3.6 27 40-66 102-128 (608)
367 1z0j_A RAB-22, RAS-related pro 89.6 0.21 7.3E-06 44.1 3.4 22 43-64 8-29 (170)
368 2fn4_A P23, RAS-related protei 89.6 0.21 7.2E-06 44.6 3.4 24 41-64 9-32 (181)
369 1r6b_X CLPA protein; AAA+, N-t 89.5 0.23 8E-06 56.5 4.5 37 42-78 489-526 (758)
370 2qag_B Septin-6, protein NEDD5 89.5 0.16 5.6E-06 55.1 3.1 21 44-64 45-65 (427)
371 4ag6_A VIRB4 ATPase, type IV s 89.5 0.17 5.8E-06 52.9 3.1 25 41-65 35-59 (392)
372 2b8t_A Thymidine kinase; deoxy 89.5 0.25 8.7E-06 48.9 4.2 27 39-65 10-36 (223)
373 2erx_A GTP-binding protein DI- 89.4 0.21 7.1E-06 44.1 3.2 21 43-63 5-25 (172)
374 3fwy_A Light-independent proto 89.4 0.22 7.5E-06 51.5 3.8 36 41-76 48-87 (314)
375 1wms_A RAB-9, RAB9, RAS-relate 89.4 0.22 7.6E-06 44.5 3.4 22 43-64 9-30 (177)
376 4dzz_A Plasmid partitioning pr 89.3 0.23 7.8E-06 46.1 3.6 34 42-75 2-40 (206)
377 3j16_B RLI1P; ribosome recycli 89.3 0.2 6.7E-06 56.6 3.7 25 42-66 379-403 (608)
378 2obl_A ESCN; ATPase, hydrolase 89.3 0.29 1E-05 51.3 4.7 26 41-66 71-96 (347)
379 2zej_A Dardarin, leucine-rich 89.3 0.19 6.6E-06 46.1 3.0 21 43-63 4-24 (184)
380 3k1j_A LON protease, ATP-depen 89.3 0.2 6.7E-06 56.0 3.6 25 42-66 61-85 (604)
381 3bk7_A ABC transporter ATP-bin 89.3 0.2 6.9E-06 56.4 3.7 27 40-66 381-407 (607)
382 1z08_A RAS-related protein RAB 89.3 0.23 8E-06 43.9 3.4 22 43-64 8-29 (170)
383 2chq_A Replication factor C sm 89.3 0.21 7.1E-06 49.4 3.4 22 44-65 41-62 (319)
384 2vhj_A Ntpase P4, P4; non- hyd 89.1 0.23 7.7E-06 52.4 3.7 33 41-73 123-156 (331)
385 1g16_A RAS-related protein SEC 89.0 0.2 6.9E-06 44.2 2.8 22 43-64 5-26 (170)
386 3bk7_A ABC transporter ATP-bin 89.0 0.18 6.2E-06 56.8 3.1 27 40-66 116-142 (607)
387 1tf7_A KAIC; homohexamer, hexa 89.0 0.19 6.5E-06 55.1 3.2 25 41-65 281-305 (525)
388 3clv_A RAB5 protein, putative; 89.0 0.25 8.4E-06 44.7 3.4 23 42-64 8-30 (208)
389 1sxj_B Activator 1 37 kDa subu 88.9 0.19 6.6E-06 49.7 2.9 22 44-65 45-66 (323)
390 1r2q_A RAS-related protein RAB 88.9 0.25 8.7E-06 43.4 3.3 22 43-64 8-29 (170)
391 1c1y_A RAS-related protein RAP 88.9 0.29 1E-05 43.0 3.8 22 43-64 5-26 (167)
392 3bc1_A RAS-related protein RAB 88.9 0.25 8.5E-06 44.5 3.3 22 43-64 13-34 (195)
393 3pxg_A Negative regulator of g 88.8 0.2 6.8E-06 54.3 3.1 23 43-65 203-225 (468)
394 3tw8_B RAS-related protein RAB 88.8 0.23 7.9E-06 44.3 3.1 21 43-63 11-31 (181)
395 2nzj_A GTP-binding protein REM 88.8 0.25 8.5E-06 44.0 3.2 21 43-63 6-26 (175)
396 2lkc_A Translation initiation 88.8 0.28 9.7E-06 43.8 3.6 24 41-64 8-31 (178)
397 4a1f_A DNAB helicase, replicat 88.8 0.2 6.8E-06 52.7 3.0 35 41-75 46-84 (338)
398 2fv8_A H6, RHO-related GTP-bin 88.8 0.18 6.1E-06 47.2 2.4 25 40-64 24-48 (207)
399 1tq4_A IIGP1, interferon-induc 88.7 0.22 7.6E-06 53.7 3.4 23 43-65 71-93 (413)
400 2y8e_A RAB-protein 6, GH09086P 88.7 0.21 7.2E-06 44.5 2.7 25 40-64 13-37 (179)
401 1qhl_A Protein (cell division 88.7 0.047 1.6E-06 54.3 -1.8 24 43-66 29-52 (227)
402 4dsu_A GTPase KRAS, isoform 2B 88.7 0.27 9.1E-06 44.3 3.4 22 43-64 6-27 (189)
403 3ux8_A Excinuclease ABC, A sub 88.6 0.14 4.8E-06 57.8 1.8 21 41-61 348-368 (670)
404 1z0f_A RAB14, member RAS oncog 88.6 0.27 9.1E-06 43.8 3.3 22 43-64 17-38 (179)
405 3q85_A GTP-binding protein REM 88.6 0.25 8.7E-06 43.8 3.2 21 43-63 4-24 (169)
406 3con_A GTPase NRAS; structural 88.6 0.25 8.7E-06 45.0 3.3 24 41-64 21-44 (190)
407 3shw_A Tight junction protein 88.6 0.37 1.3E-05 52.9 5.0 30 38-70 221-250 (468)
408 3oes_A GTPase rhebl1; small GT 88.5 0.25 8.5E-06 45.9 3.1 29 36-64 19-47 (201)
409 2a9k_A RAS-related protein RAL 88.4 0.28 9.7E-06 44.0 3.3 24 41-64 18-41 (187)
410 1osn_A Thymidine kinase, VZV-T 88.3 0.17 5.7E-06 53.5 2.1 26 41-66 12-38 (341)
411 1r8s_A ADP-ribosylation factor 88.3 0.29 9.9E-06 43.1 3.3 21 44-64 3-23 (164)
412 1nrj_B SR-beta, signal recogni 88.3 0.32 1.1E-05 45.5 3.8 23 42-64 13-35 (218)
413 2vf7_A UVRA2, excinuclease ABC 88.2 0.2 6.7E-06 58.8 2.7 19 41-59 36-54 (842)
414 3q72_A GTP-binding protein RAD 88.2 0.22 7.5E-06 44.0 2.5 20 43-62 4-23 (166)
415 1upt_A ARL1, ADP-ribosylation 88.2 0.37 1.3E-05 42.6 4.0 23 42-64 8-30 (171)
416 3pqc_A Probable GTP-binding pr 88.1 0.29 1E-05 44.3 3.3 25 40-64 22-46 (195)
417 3qks_A DNA double-strand break 88.1 0.37 1.3E-05 46.2 4.2 29 37-65 19-47 (203)
418 1t9h_A YLOQ, probable GTPase E 88.0 0.12 4E-06 53.7 0.6 26 40-65 172-197 (307)
419 2hxs_A RAB-26, RAS-related pro 88.0 0.3 1E-05 43.7 3.2 22 43-64 8-29 (178)
420 3t1o_A Gliding protein MGLA; G 87.9 0.34 1.1E-05 43.9 3.6 24 43-66 16-39 (198)
421 2qtf_A Protein HFLX, GTP-bindi 87.9 0.38 1.3E-05 50.6 4.5 23 42-64 180-202 (364)
422 2gj8_A MNME, tRNA modification 87.7 0.3 1E-05 44.5 3.2 23 42-64 5-27 (172)
423 2g6b_A RAS-related protein RAB 87.7 0.33 1.1E-05 43.5 3.3 22 43-64 12-33 (180)
424 2efe_B Small GTP-binding prote 87.7 0.33 1.1E-05 43.5 3.4 22 43-64 14-35 (181)
425 3pxi_A Negative regulator of g 87.7 0.42 1.4E-05 54.6 5.0 36 43-78 523-562 (758)
426 3kkq_A RAS-related protein M-R 87.6 0.34 1.2E-05 43.8 3.3 24 41-64 18-41 (183)
427 1mh1_A RAC1; GTP-binding, GTPa 87.6 0.34 1.2E-05 43.5 3.3 22 43-64 7-28 (186)
428 2bme_A RAB4A, RAS-related prot 87.5 0.28 9.7E-06 44.2 2.8 22 43-64 12-33 (186)
429 2bov_A RAla, RAS-related prote 87.5 0.4 1.4E-05 44.0 3.8 25 40-64 13-37 (206)
430 2oil_A CATX-8, RAS-related pro 87.4 0.34 1.1E-05 44.4 3.3 22 43-64 27-48 (193)
431 1svi_A GTP-binding protein YSX 87.4 0.26 8.7E-06 45.0 2.5 25 40-64 22-46 (195)
432 3bfv_A CAPA1, CAPB2, membrane 87.4 0.39 1.3E-05 48.3 4.0 37 40-76 81-122 (271)
433 3k53_A Ferrous iron transport 87.3 0.33 1.1E-05 48.0 3.5 24 41-64 3-26 (271)
434 3te6_A Regulatory protein SIR3 87.3 0.25 8.5E-06 51.5 2.6 26 40-65 44-69 (318)
435 1xx6_A Thymidine kinase; NESG, 87.3 0.37 1.2E-05 46.5 3.6 26 40-65 7-32 (191)
436 3szr_A Interferon-induced GTP- 87.3 0.41 1.4E-05 53.8 4.5 22 44-65 48-69 (608)
437 3zq6_A Putative arsenical pump 87.3 0.33 1.1E-05 49.9 3.4 34 42-75 15-52 (324)
438 4f4c_A Multidrug resistance pr 87.2 0.21 7.3E-06 61.0 2.3 27 40-66 443-469 (1321)
439 3cio_A ETK, tyrosine-protein k 87.0 0.34 1.2E-05 49.4 3.4 36 40-75 103-143 (299)
440 1vg8_A RAS-related protein RAB 87.0 0.38 1.3E-05 44.3 3.4 22 43-64 10-31 (207)
441 3tkl_A RAS-related protein RAB 87.0 0.38 1.3E-05 43.8 3.3 22 43-64 18-39 (196)
442 2a5y_B CED-4; apoptosis; HET: 87.0 0.38 1.3E-05 52.7 4.0 23 41-63 152-174 (549)
443 1w5s_A Origin recognition comp 86.9 0.37 1.3E-05 49.5 3.6 24 42-65 51-76 (412)
444 2cxx_A Probable GTP-binding pr 86.9 0.28 9.6E-06 44.3 2.5 21 43-63 3-23 (190)
445 3llm_A ATP-dependent RNA helic 86.9 0.38 1.3E-05 46.6 3.5 21 41-61 76-96 (235)
446 3pxi_A Negative regulator of g 86.9 0.29 1E-05 55.9 3.1 23 43-65 203-225 (758)
447 3q9l_A Septum site-determining 86.8 0.41 1.4E-05 46.2 3.7 34 42-75 3-41 (260)
448 3iqw_A Tail-anchored protein t 86.8 0.51 1.8E-05 49.2 4.7 35 41-75 16-54 (334)
449 2q6t_A DNAB replication FORK h 86.8 0.35 1.2E-05 51.8 3.5 35 41-75 200-239 (444)
450 2iw3_A Elongation factor 3A; a 86.7 0.35 1.2E-05 57.7 3.7 24 40-63 460-483 (986)
451 3lxx_A GTPase IMAP family memb 86.6 0.37 1.3E-05 46.4 3.2 24 41-64 29-52 (239)
452 3bwd_D RAC-like GTP-binding pr 86.6 0.42 1.4E-05 42.9 3.3 23 42-64 9-31 (182)
453 3upu_A ATP-dependent DNA helic 86.5 0.36 1.2E-05 51.8 3.4 50 12-65 20-69 (459)
454 3pih_A Uvrabc system protein A 86.5 0.22 7.4E-06 59.0 1.8 18 41-58 24-41 (916)
455 1jwy_B Dynamin A GTPase domain 86.5 0.62 2.1E-05 46.5 4.9 27 38-64 21-47 (315)
456 3k9g_A PF-32 protein; ssgcid, 86.5 0.54 1.9E-05 46.0 4.4 37 40-76 26-66 (267)
457 3t5g_A GTP-binding protein RHE 86.5 0.3 1E-05 44.0 2.4 22 42-63 7-28 (181)
458 2gf9_A RAS-related protein RAB 86.4 0.42 1.4E-05 43.7 3.3 22 43-64 24-45 (189)
459 1wb9_A DNA mismatch repair pro 86.4 0.38 1.3E-05 56.1 3.7 25 40-64 606-630 (800)
460 1z06_A RAS-related protein RAB 86.4 0.43 1.5E-05 43.6 3.4 23 42-64 21-43 (189)
461 3g5u_A MCG1178, multidrug resi 86.4 0.25 8.7E-06 60.2 2.3 27 40-66 415-441 (1284)
462 1m7b_A RND3/RHOE small GTP-bin 86.3 0.36 1.2E-05 44.0 2.8 22 43-64 9-30 (184)
463 3tsz_A Tight junction protein 86.3 2.7 9.1E-05 44.8 9.9 28 38-68 229-256 (391)
464 3ug7_A Arsenical pump-driving 86.2 0.46 1.6E-05 49.4 3.9 35 41-75 26-64 (349)
465 2ygr_A Uvrabc system protein A 86.2 0.26 9E-06 58.7 2.3 19 41-59 46-64 (993)
466 2r6f_A Excinuclease ABC subuni 86.1 0.27 9.1E-06 58.5 2.2 19 41-59 44-62 (972)
467 1x3s_A RAS-related protein RAB 86.0 0.45 1.6E-05 43.1 3.3 23 42-64 16-38 (195)
468 3ihw_A Centg3; RAS, centaurin, 86.0 0.55 1.9E-05 43.3 3.9 27 38-64 17-43 (184)
469 1zbd_A Rabphilin-3A; G protein 86.0 0.43 1.5E-05 44.0 3.2 22 43-64 10-31 (203)
470 2atv_A RERG, RAS-like estrogen 85.9 0.59 2E-05 43.0 4.1 25 40-64 27-51 (196)
471 1qvr_A CLPB protein; coiled co 85.8 0.43 1.5E-05 55.4 3.8 36 42-77 589-628 (854)
472 3g5u_A MCG1178, multidrug resi 85.8 0.31 1.1E-05 59.4 2.7 26 41-66 1059-1084(1284)
473 2fg5_A RAB-22B, RAS-related pr 85.8 0.4 1.4E-05 44.1 2.9 22 43-64 25-46 (192)
474 1w1w_A Structural maintenance 85.8 0.52 1.8E-05 50.1 4.1 26 41-66 26-51 (430)
475 2gf0_A GTP-binding protein DI- 85.7 0.41 1.4E-05 43.7 2.9 23 42-64 9-31 (199)
476 2a5j_A RAS-related protein RAB 85.7 0.47 1.6E-05 43.5 3.3 22 43-64 23-44 (191)
477 4aby_A DNA repair protein RECN 85.7 0.2 6.9E-06 52.3 0.9 24 43-66 62-85 (415)
478 1u0j_A DNA replication protein 85.6 0.57 1.9E-05 47.9 4.1 26 41-66 104-129 (267)
479 1ksh_A ARF-like protein 2; sma 85.6 0.55 1.9E-05 42.5 3.7 23 41-63 18-40 (186)
480 1fzq_A ADP-ribosylation factor 85.6 0.49 1.7E-05 43.3 3.3 25 40-64 15-39 (181)
481 1ewq_A DNA mismatch repair pro 85.6 0.42 1.4E-05 55.4 3.5 24 41-64 576-599 (765)
482 1hyq_A MIND, cell division inh 85.5 0.57 2E-05 45.5 4.0 34 42-75 3-41 (263)
483 2p5s_A RAS and EF-hand domain 85.4 0.49 1.7E-05 43.8 3.3 24 41-64 28-51 (199)
484 2qnr_A Septin-2, protein NEDD5 85.4 0.32 1.1E-05 49.6 2.2 21 43-63 20-40 (301)
485 3e1s_A Exodeoxyribonuclease V, 85.4 0.42 1.4E-05 53.4 3.3 25 41-65 204-228 (574)
486 4bas_A ADP-ribosylation factor 85.4 0.51 1.8E-05 43.0 3.4 24 40-63 16-39 (199)
487 3cph_A RAS-related protein SEC 85.3 0.51 1.7E-05 43.7 3.3 23 42-64 21-43 (213)
488 1moz_A ARL1, ADP-ribosylation 85.3 0.37 1.3E-05 43.4 2.3 23 40-62 17-39 (183)
489 1m2o_B GTP-binding protein SAR 85.3 0.43 1.5E-05 44.2 2.8 23 42-64 24-46 (190)
490 1zd9_A ADP-ribosylation factor 85.2 0.52 1.8E-05 43.2 3.3 23 42-64 23-45 (188)
491 1q57_A DNA primase/helicase; d 85.2 0.45 1.5E-05 51.6 3.4 36 40-75 241-281 (503)
492 1e69_A Chromosome segregation 85.2 0.41 1.4E-05 48.9 2.9 29 38-66 21-49 (322)
493 1zcb_A G alpha I/13; GTP-bindi 85.2 0.54 1.8E-05 49.7 3.8 44 12-63 12-55 (362)
494 3io5_A Recombination and repai 85.1 0.54 1.8E-05 49.6 3.8 38 38-75 25-68 (333)
495 2woo_A ATPase GET3; tail-ancho 85.1 0.57 1.9E-05 48.3 3.9 35 41-75 19-57 (329)
496 2qag_C Septin-7; cell cycle, c 85.0 0.43 1.5E-05 51.5 3.1 21 44-64 34-54 (418)
497 2fh5_B SR-beta, signal recogni 85.0 0.53 1.8E-05 43.9 3.3 23 42-64 8-30 (214)
498 1r6b_X CLPA protein; AAA+, N-t 85.0 0.59 2E-05 53.1 4.3 25 41-65 207-231 (758)
499 3dz8_A RAS-related protein RAB 84.9 0.46 1.6E-05 43.6 2.8 22 43-64 25-46 (191)
500 3reg_A RHO-like small GTPase; 84.9 0.55 1.9E-05 43.1 3.3 22 43-64 25-46 (194)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.94 E-value=1.2e-26 Score=242.80 Aligned_cols=174 Identities=19% Similarity=0.199 Sum_probs=147.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEcccccCCccc-----ccCCCCCcccccHHHHHHHHHhhhCCC-
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGK- 109 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~~~~r~-----~dgnfD~P~afD~dlL~~~L~~Lk~Gk- 109 (636)
.+|+|+||+|||||||++.|...++ .+.++++|+|+..... ...+|++|.+||++.+.+.|..+++|+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~ 172 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQR 172 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhcccc
Confidence 4778899999999999999998863 4889999999754321 112578899999999999999999999
Q ss_pred ceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhc-----------ccCCccEEEEEeCChhhHHHHHHhhhhhhc
Q 006667 110 AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-----------LRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 178 (636)
Q Consensus 110 ~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~e-----------LRdl~DLKIFVDad~D~RL~RRI~RDi~eR 178 (636)
.+.+|.||+..+.+.......+.+.+|||+||+++++.. +++++|.+|||++|.++|+.|++.||...|
T Consensus 173 ~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r 252 (321)
T 3tqc_A 173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFW 252 (321)
T ss_dssp SEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhh
Confidence 999999999999886544556788899999999999844 889999999999999999999999998876
Q ss_pred C---------------CCHHHH----HHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 179 G---------------QEPEEI----IHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 179 G---------------rslEeV----l~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
| .+.+++ .++|....+|++++||+|++.+||+||+.+
T Consensus 253 ~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 253 RTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp HTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEEC
T ss_pred hhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecC
Confidence 5 455443 456777778999999999999999999843
No 2
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.91 E-value=3.5e-24 Score=213.12 Aligned_cols=194 Identities=27% Similarity=0.473 Sum_probs=158.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC---------CcEEEEcccccCC--c----cc--ccCCCCCcccccHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDS--S----RI--IDGNFDDPRLTDYDTLLENIR 103 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~---------~v~VIsmDdY~~~--~----r~--~dgnfD~P~afD~dlL~~~L~ 103 (636)
..+|+|+|++||||||+|+.|++.++ .+.+|++|+|++. . +. ....|++|+++|++.+.+.|.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~L~ 101 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLK 101 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHHHH
Confidence 35799999999999999999999885 1238999999753 1 11 135799999999999999999
Q ss_pred hhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCH
Q 006667 104 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 182 (636)
Q Consensus 104 ~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrsl 182 (636)
.+..|..+..|.||+..+.+.. +.+...+.++||+||+++++ +.+.+.+|.+|||++|.++++.|+..|+...+|.+.
T Consensus 102 ~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~ 180 (252)
T 1uj2_A 102 EITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDL 180 (252)
T ss_dssp HHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCCCH
Confidence 9999999999999999887653 33444567899999999985 678888999999999999999999999887889999
Q ss_pred HHHHHHHHhcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcc
Q 006667 183 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 246 (636)
Q Consensus 183 EeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~ 246 (636)
+++.++|..++.|.|.++++|.+..||++|++..+.. . ..+-+.++|.+.+..
T Consensus 181 e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~------~-----s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 181 EQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNL------V-----AINLIVQHIQDILNG 233 (252)
T ss_dssp HHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCH------H-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCCh------h-----HHHHHHHHHHHHHcc
Confidence 9999999999889999999999999999995432221 0 234556666666653
No 3
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.91 E-value=7.1e-25 Score=225.14 Aligned_cols=169 Identities=17% Similarity=0.245 Sum_probs=137.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCC--cc--------ccc--CCCCC--cccccHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS--SR--------IID--GNFDD--PRLTDYDTLLENI 102 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~--~r--------~~d--gnfD~--P~afD~dlL~~~L 102 (636)
..+|+|+||+||||||+|+.|++.++ .+.+|++|+|++. .. ... .+|++ |+++|++.+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l 84 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF 84 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHH
Confidence 45899999999999999999999874 2789999999853 11 111 25555 9999999999999
Q ss_pred HhhhCCCceeeeeeec-----cCCcccCcc---eeec-CCCceEEEEehhhh----hhcccCCccEEEEEeCChhhHHHH
Q 006667 103 RGLKEGKAVQVPIYDF-----KSSSRIGYR---TLEV-PSSRIVIIEGIYAL----SEKLRPLIDLRVSVTGGVHFDLVK 169 (636)
Q Consensus 103 ~~Lk~Gk~I~iPvYDf-----~t~~R~~~e---ti~v-~~~dVIIVEGiyaL----~~eLRdl~DLKIFVDad~D~RL~R 169 (636)
..++.++.+.+|.|++ ..|.+.... ...+ .+.++||+||++++ ...+++.+|++|||++|.++|+.|
T Consensus 85 ~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~R 164 (290)
T 1a7j_A 85 REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQ 164 (290)
T ss_dssp HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHHH
T ss_pred HHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHHH
Confidence 9999999999999955 233332211 0123 45789999999998 357889999999999999999999
Q ss_pred HHhhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCccE
Q 006667 170 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI 210 (636)
Q Consensus 170 RI~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~ADI 210 (636)
|+.||..+||++.++++++|..+ +|.|.+||+|.+.+||+
T Consensus 165 rl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~ 204 (290)
T 1a7j_A 165 KIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDI 204 (290)
T ss_dssp HHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSE
T ss_pred HhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCE
Confidence 99999999999999999999998 99999999999999999
No 4
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.90 E-value=3.7e-23 Score=213.00 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=145.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEcccccCCccc--c---cCCCCCcccccHHHHHHHHHhhhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI--I---DGNFDDPRLTDYDTLLENIRGLKEG 108 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~~~~r~--~---dgnfD~P~afD~dlL~~~L~~Lk~G 108 (636)
+..+|+|.|++|||||||++.|+..++ .+.+|++|+|+..... . --.|+.|..+|...+...+..+..|
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~ 158 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSG 158 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCC
Confidence 356899999999999999999999753 3889999998653211 0 0246678899999999999999999
Q ss_pred Cc-eeeeeeeccCCcccCcceeecCCCceEEEEehhhhhh-----------cccCCccEEEEEeCChhhHHHHHHhhhhh
Q 006667 109 KA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----------KLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 176 (636)
Q Consensus 109 k~-I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~-----------eLRdl~DLKIFVDad~D~RL~RRI~RDi~ 176 (636)
+. +.+|.|++..+.+.......+.+.++||+||+++++. .+.+++|.+|||++|.++++.|++.|+..
T Consensus 159 ~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~ 238 (308)
T 1sq5_A 159 VPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLK 238 (308)
T ss_dssp CSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHH
Confidence 87 9999999999877653333445678999999999985 68899999999999999999999999864
Q ss_pred h---------------cCCCHHHH----HHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 177 R---------------VGQEPEEI----IHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 177 e---------------RGrslEeV----l~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
. +|.+.+++ ..||...++|++++||+|++++||+||+|+.
T Consensus 239 ~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~ 297 (308)
T 1sq5_A 239 FREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSA 297 (308)
T ss_dssp HHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECG
T ss_pred HHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCC
Confidence 2 48888874 5567778899999999999999999998763
No 5
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.89 E-value=1.1e-22 Score=194.89 Aligned_cols=194 Identities=28% Similarity=0.450 Sum_probs=160.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccccCC-cc-----cccCCCCCcccccHHHHHHHHHhhhCCCceee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDS-SR-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 113 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY~~~-~r-----~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~i 113 (636)
..+|+|.|++|||||||++.|+..++ .+.++++|.|+.. .. .....|+.|..+|.+.+.+.+..+..++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 45899999999999999999999874 3889999997642 11 11245778889999999999999999999999
Q ss_pred eeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhc
Q 006667 114 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 192 (636)
Q Consensus 114 PvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~ 192 (636)
|.|++..+.+.. +...+...+++|+||.+++. +.+..++|.+||||++.+.++.|++.|+..++|++...+.++|..+
T Consensus 86 ~~~~~s~g~~~~-~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~ 164 (211)
T 3asz_A 86 PVYDFRAYTRSP-RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQ 164 (211)
T ss_dssp CCEETTTTEECS-SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHT
T ss_pred CcccCcccCCCC-CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 999998876643 22345667899999999997 5688899999999999999999999999888999999999999999
Q ss_pred CCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcc
Q 006667 193 VYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 246 (636)
Q Consensus 193 VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~ 246 (636)
++|.|.+|++|.+.+||+||.|+.+ ++. +.+.+..+|.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~aD~ii~~~~~------~~~-----~~~~~~~~i~~~~~~ 207 (211)
T 3asz_A 165 VKPMHLHFVEPTKRYADVIVPRGGQ------NPV-----ALEMLAAKALARLAR 207 (211)
T ss_dssp HHHHHHHTTGGGGGGCSEEEESTTS------CHH-----HHHHHHHHHTHHHHC
T ss_pred hhhhHHHhcccchhcCeEEEeCCCc------chH-----HHHHHHHHHHHHHHh
Confidence 9999999999999999999987542 122 445666666666643
No 6
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.88 E-value=8.1e-23 Score=216.82 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=124.2
Q ss_pred cEEEEcccccCCccc---------ccCCCCCcccccHHHHHHHHHhhhCC-----------------------------C
Q 006667 68 IAVITMDNYNDSSRI---------IDGNFDDPRLTDYDTLLENIRGLKEG-----------------------------K 109 (636)
Q Consensus 68 v~VIsmDdY~~~~r~---------~dgnfD~P~afD~dlL~~~L~~Lk~G-----------------------------k 109 (636)
+.+|+||+||..... ...++++|.+||++.|.+.+..|++| +
T Consensus 156 v~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 2ga8_A 156 AQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIP 235 (359)
T ss_dssp EEEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCC
T ss_pred EEEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCc
Confidence 468999999864321 23589999999999999999999887 6
Q ss_pred ceeeeeeeccCCcccCcceeecCC-CceEEEEehhhhhh-----cccCCcc-----EEEEEeCChhhHHHHHHhhhhhhc
Q 006667 110 AVQVPIYDFKSSSRIGYRTLEVPS-SRIVIIEGIYALSE-----KLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRV 178 (636)
Q Consensus 110 ~I~iPvYDf~t~~R~~~eti~v~~-~dVIIVEGiyaL~~-----eLRdl~D-----LKIFVDad~D~RL~RRI~RDi~eR 178 (636)
.+.+|.||+..+.+... ...+.+ .+|||+||+|+|++ .+++++| ++||||+|.++++.|++.|++ ++
T Consensus 236 ~v~~P~yD~~~~d~~~~-~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~~ 313 (359)
T 2ga8_A 236 DIFVPGFNHALKDPTPD-QYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-QS 313 (359)
T ss_dssp CEEEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-HT
T ss_pred eEeeccccCccCCCCCC-ceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-cc
Confidence 79999999999988763 334444 69999999999974 4678999 999999999999999999987 57
Q ss_pred CC--CHHHHHHHHHhcCCcchhhhccCCcCCccEEEeC
Q 006667 179 GQ--EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 214 (636)
Q Consensus 179 Gr--slEeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN 214 (636)
|+ +.++++.+|...+.|+. +||+|++.+||+|+.-
T Consensus 314 Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~~ 350 (359)
T 2ga8_A 314 GLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVHI 350 (359)
T ss_dssp TSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEEE
T ss_pred CCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEEe
Confidence 99 99999999999999987 8999999999999853
No 7
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.87 E-value=4.4e-22 Score=192.34 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=143.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCccc--cc---CCCCCcccccHHHHHHHHHhhhCCCc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI--ID---GNFDDPRLTDYDTLLENIRGLKEGKA 110 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~--~d---gnfD~P~afD~dlL~~~L~~Lk~Gk~ 110 (636)
+..+|+|.|++|||||||++.|+..++ .+.+|++|+|+..... .. ...+.|.++|.+.+.+.+..+..|+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 100 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQER 100 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCCc
Confidence 456899999999999999999999874 3789999998653211 11 12467889999999999999999999
Q ss_pred eeeeeeeccCCcccCcceeecCCC-ceEEEEehhhhh-h----cccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH
Q 006667 111 VQVPIYDFKSSSRIGYRTLEVPSS-RIVIIEGIYALS-E----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 184 (636)
Q Consensus 111 I~iPvYDf~t~~R~~~eti~v~~~-dVIIVEGiyaL~-~----eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe 184 (636)
+..|.||+..+.+.+ ....+... +++|+||.|++. + .+++.+|.+|||+++.+.++.|++.|+ .++|++.++
T Consensus 101 i~~p~~d~~~~~~~g-~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~t~~~ 178 (208)
T 3c8u_A 101 VIYPLFDRARDIAIA-GAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLNHDA 178 (208)
T ss_dssp EEEEEEETTTTEEEE-EEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTCCHHH
T ss_pred eecccCCccccCCCC-CceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCCCHHH
Confidence 999999999887654 33455565 899999999865 2 568899999999999999998888885 578999999
Q ss_pred HHHHHHhcCCcchhhhccCCcCCccEEEe
Q 006667 185 IIHQISETVYPMYKAFIEPDLQTAHIKII 213 (636)
Q Consensus 185 Vl~qyl~~VrP~~ekfIePtk~~ADIIIp 213 (636)
+.++|....+|++ +|++|++.+||+||+
T Consensus 179 ~~~~~~~~~~~~~-~~i~~~~~~aD~vi~ 206 (208)
T 3c8u_A 179 AVARAQGNDLANA-RAIEAARLPADLTWP 206 (208)
T ss_dssp HHHHHHTHHHHHH-HHHHTTBCCCSEEEC
T ss_pred HHHHHHhccHHHH-HHHHhCCCCCCEEee
Confidence 9999998889977 899999999999996
No 8
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.87 E-value=9.8e-22 Score=202.30 Aligned_cols=172 Identities=19% Similarity=0.280 Sum_probs=133.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC--C----cEEE-EcccccCCccc----c--------cCCCCCcccccHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP--S----IAVI-TMDNYNDSSRI----I--------DGNFDDPRLTDYDTLLEN 101 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~--~----v~VI-smDdY~~~~r~----~--------dgnfD~P~afD~dlL~~~ 101 (636)
..+|+|+|+|||||||||+.|+..++ + +.++ ++|+|+..... . --.+++|+++|++.+.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~ 110 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEV 110 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHHH
Confidence 45788899999999999999999875 1 4555 99999764311 0 012457999999999999
Q ss_pred HHhhhCC------CceeeeeeeccC----CcccCc-ceeecCCCceEEEEehhhhh-hc---------------------
Q 006667 102 IRGLKEG------KAVQVPIYDFKS----SSRIGY-RTLEVPSSRIVIIEGIYALS-EK--------------------- 148 (636)
Q Consensus 102 L~~Lk~G------k~I~iPvYDf~t----~~R~~~-eti~v~~~dVIIVEGiyaL~-~e--------------------- 148 (636)
|..++.| +.+.+|.|++.. ++|... ....+ +.+|+|+||++++. +.
T Consensus 111 l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n~~l 189 (290)
T 1odf_A 111 LNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKL 189 (290)
T ss_dssp HHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHHHHH
T ss_pred HHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHHHHH
Confidence 9999998 789999999998 777542 23445 78999999999865 33
Q ss_pred ------ccCCccEE---EEEeCChhhHHHH-HHhh--h-hhhc--CCCHHHHHHHHHhcCCcchhhhccCCc------CC
Q 006667 149 ------LRPLIDLR---VSVTGGVHFDLVK-RVFR--D-IQRV--GQEPEEIIHQISETVYPMYKAFIEPDL------QT 207 (636)
Q Consensus 149 ------LRdl~DLK---IFVDad~D~RL~R-RI~R--D-i~eR--GrslEeVl~qyl~~VrP~~ekfIePtk------~~ 207 (636)
+++++|++ |||++|.+.++.| |++| | ..++ |++.+++ .+|..+++|+|+.|++|.+ ..
T Consensus 190 ~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~~~~~ 268 (290)
T 1odf_A 190 FFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSESLGSI 268 (290)
T ss_dssp HHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTCSSSS
T ss_pred HHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhccCCCC
Confidence 45556666 9999988888887 8998 5 3456 9999996 7888999999888776532 38
Q ss_pred ccEEEeC
Q 006667 208 AHIKIIN 214 (636)
Q Consensus 208 ADIIIpN 214 (636)
||+||.-
T Consensus 269 adlvl~~ 275 (290)
T 1odf_A 269 ATLTLGI 275 (290)
T ss_dssp EEEEEEE
T ss_pred CCEEEEE
Confidence 9999963
No 9
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.86 E-value=2.6e-21 Score=201.05 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=145.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC------CcEEEEcccccCCccc----ccC-CCCCcccccHHHHHHHHHhhhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI----IDG-NFDDPRLTDYDTLLENIRGLKEG 108 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~------~v~VIsmDdY~~~~r~----~dg-nfD~P~afD~dlL~~~L~~Lk~G 108 (636)
+..+|+|.|++|||||||++.|...++ .+.++++|.|+..... .-. .++.|.++|.+.+.+.|..+..|
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~ 168 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSG 168 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCC
Confidence 356899999999999999999999763 3789999998654211 111 35789999999999999999877
Q ss_pred Cc-eeeeeeeccCCcccCcceeecCCCceEEEEehhhhh----hcccCCccEEEEEeCChhhHHHHHHhhhhhh------
Q 006667 109 KA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR------ 177 (636)
Q Consensus 109 k~-I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~----~eLRdl~DLKIFVDad~D~RL~RRI~RDi~e------ 177 (636)
.. +..|.|++..+.|.......+.+.+|+|+||++++. ..+++++|.+|||++|.+.++.|++.|++..
T Consensus 169 ~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r 248 (312)
T 3aez_A 169 SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFA 248 (312)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGG
T ss_pred cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcccc
Confidence 65 888999999888865333345677999999999996 4789999999999999999999999886642
Q ss_pred ---------cCCCHHHHH----HHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 178 ---------VGQEPEEII----HQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 178 ---------RGrslEeVl----~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
.|.+.++++ .+|...++|++++||+|++.+||+||+++.
T Consensus 249 ~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 249 DPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp STTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred CcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 377888866 678888999999999999999999998653
No 10
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.86 E-value=4.4e-21 Score=190.02 Aligned_cols=193 Identities=27% Similarity=0.474 Sum_probs=154.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC---------cEEEEcccccCC-c-c------cccCCCCCcccccHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS---------IAVITMDNYNDS-S-R------IIDGNFDDPRLTDYDTLLENIR 103 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~---------v~VIsmDdY~~~-~-r------~~dgnfD~P~afD~dlL~~~L~ 103 (636)
..+|+|+||+|||||||++.|+..++. +.++++|.|+.. . . ...+.|++|.++|.+.+.+.|.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 104 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLK 104 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHHHH
Confidence 468999999999999999999997742 348999987642 1 1 0124678888999999999999
Q ss_pred hhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCH
Q 006667 104 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 182 (636)
Q Consensus 104 ~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrsl 182 (636)
.+..+.....+.|+...+.|... .....+.+++|+||++++. ..+.+++|.+|||+++.+.++.|++.|++ ++|++.
T Consensus 105 ~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G~~~ 182 (245)
T 2jeo_A 105 NIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRGRDL 182 (245)
T ss_dssp HHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C---CH
T ss_pred HHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcCCCH
Confidence 88888888888899888877642 2334567899999999885 67888899999999999999999999998 889999
Q ss_pred HHHHHHHHhcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcc
Q 006667 183 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 246 (636)
Q Consensus 183 EeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~ 246 (636)
++++++|..+++|.+++|++|.++.||+||++..+ |.. +.+.+.++|.+.+.+
T Consensus 183 e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~d------n~~-----~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 183 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVD------NMV-----AINLIVQHIQDILNG 235 (245)
T ss_dssp HHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTT------CHH-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCC------ccH-----HHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999975432 222 446677777777654
No 11
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.82 E-value=9.1e-21 Score=182.49 Aligned_cols=167 Identities=18% Similarity=0.272 Sum_probs=117.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccCCccc-ccCCCC-----CcccccHHHHHHHH-HhhhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-IDGNFD-----DPRLTDYDTLLENI-RGLKEG 108 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~~~r~-~dgnfD-----~P~afD~dlL~~~L-~~Lk~G 108 (636)
+..+|+|+|++||||||+++.|...++ .+.++++|.|+..... .....+ .+.++|.+.|.+.+ ..++.|
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~ 100 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS 100 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence 356899999999999999999998752 3677889998654211 111111 14678999998875 778888
Q ss_pred CceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHH
Q 006667 109 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 188 (636)
Q Consensus 109 k~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~q 188 (636)
+.+.+|.|++..+.+.. ......+.++||+||++++...+.+++|.+|||++|.++++.|++.|+ +++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~~~~~~ 171 (201)
T 1rz3_A 101 HQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV--------KQNIQK 171 (201)
T ss_dssp SEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC----------------------CHHH
T ss_pred CccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC--------HHHHHH
Confidence 99999999998554322 233446678999999999988888999999999999999999888876 667788
Q ss_pred HHhcCCcchhhhccCC--cCCccEEEeCC
Q 006667 189 ISETVYPMYKAFIEPD--LQTAHIKIINK 215 (636)
Q Consensus 189 yl~~VrP~~ekfIePt--k~~ADIIIpN~ 215 (636)
|...+.|+++.|++|. +.+||+||.|+
T Consensus 172 ~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 172 FINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 8777889999998776 68999999875
No 12
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.78 E-value=1.1e-18 Score=167.71 Aligned_cols=148 Identities=23% Similarity=0.341 Sum_probs=123.9
Q ss_pred HHHHHHhccc-ccccccceeeeEecCCCCCcccccceEEee----ecCCeEEEEEeeeecCCCcccccceeEEEeee---
Q 006667 238 DEIKAVMSKE-HTETTEETYDIYLLPPGEDPDACQSYLRMR----NRDGKYNLMFEEWVTDSPFIISPRITFEVSVR--- 309 (636)
Q Consensus 238 d~I~~~L~~~-~~~~~e~~~DIYLlpPt~df~~tdeaLRiR----~~dg~~~Ltykgp~~d~~fiikPR~efev~v~--- 309 (636)
+.+...|... .......+.|+||-.|+.++...+.|||+| ..++++.+|||+|..+... +.|.|+|+.+.
T Consensus 12 ~~~~~~L~~~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~--~~r~E~e~~v~~~~ 89 (183)
T 2een_A 12 DEIFEKVRETFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKS--KTRLEIEVEIQEDV 89 (183)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTS--CCEEEEEEEECSCH
T ss_pred HHHHHHHHhcCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCc--eeEEEEEEeecCCH
Confidence 3444555441 112234567999999999999999999999 5678999999999887765 88999999997
Q ss_pred --chhhhhhcCCeEEEEEEeeeeeeeeC-CEEEEeecccccCcceEEEecc---------cHHHHHHHHHHcCCCCCccc
Q 006667 310 --LLGGLMALGYTIATILKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGSYVP 377 (636)
Q Consensus 310 --~~~gL~~LGy~~aa~V~R~re~y~~~-~~~i~lD~ve~Lg~~FveIeg~---------~r~~v~~~~~~Lgl~G~~i~ 377 (636)
+...|..+||.+.+.+.+.|+.|..+ ++.|+||++++||. |+|||.. ..+.+.+++.+||| ++.++
T Consensus 90 ~~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~ 167 (183)
T 2een_A 90 DKYFELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFER 167 (183)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCC
T ss_pred HHHHHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCcee
Confidence 44557789999999999999999999 99999999999995 9999942 57889999999999 89999
Q ss_pred chhHHHHHhhhcc
Q 006667 378 RTYIEQIQLEKLV 390 (636)
Q Consensus 378 kSYLEli~lek~~ 390 (636)
+||+||+ +++..
T Consensus 168 ~sY~ell-~~~~~ 179 (183)
T 2een_A 168 RSYLELL-LEKRT 179 (183)
T ss_dssp SCHHHHH-HHTC-
T ss_pred ccHHHHH-Hhhhh
Confidence 9999999 76643
No 13
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.78 E-value=1.7e-18 Score=167.19 Aligned_cols=139 Identities=17% Similarity=0.268 Sum_probs=116.1
Q ss_pred HHHHHHHhccccc---ccccceeeeEecCCCCCcccccceEEeeec--CCeEEEEEeeeecCCCcccccceeEEEee---
Q 006667 237 VDEIKAVMSKEHT---ETTEETYDIYLLPPGEDPDACQSYLRMRNR--DGKYNLMFEEWVTDSPFIISPRITFEVSV--- 308 (636)
Q Consensus 237 ~d~I~~~L~~~~~---~~~e~~~DIYLlpPt~df~~tdeaLRiR~~--dg~~~Ltykgp~~d~~fiikPR~efev~v--- 308 (636)
.+.+...|..... .....+.|+||-.|..++..++.|||+|.. +|.+.+|||+|+.+.. .++.|
T Consensus 20 ~~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~--------~e~~v~d~ 91 (179)
T 3ghx_A 20 LTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAERC--------EASNIEDV 91 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSBE--------EEEECSCH
T ss_pred HHHHHHHHHhcCCccccCcceEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEEEecCCCCcE--------EEEEcCCH
Confidence 4566677765322 234456799999999999999999999986 3789999999997642 24455
Q ss_pred -echhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEecc---------cHHHHHHHHHHcCCCC-Cccc
Q 006667 309 -RLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDG-SYVP 377 (636)
Q Consensus 309 -~~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg~---------~r~~v~~~~~~Lgl~G-~~i~ 377 (636)
.+...|..|||.+++.+.|.|+.|..++++|+||+++||| .|+|||.. .++.+.+++.+|||+. +.++
T Consensus 92 ~~~~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~ 170 (179)
T 3ghx_A 92 SKVQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEP 170 (179)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCC
T ss_pred HHHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhcee
Confidence 4445588999999999999999999999999999999999 59999943 5689999999999998 5799
Q ss_pred chhHHHH
Q 006667 378 RTYIEQI 384 (636)
Q Consensus 378 kSYLEli 384 (636)
+||+||+
T Consensus 171 ~sY~eLl 177 (179)
T 3ghx_A 171 RSYRQLL 177 (179)
T ss_dssp SCHHHHH
T ss_pred hhHHHHh
Confidence 9999998
No 14
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.77 E-value=1.9e-18 Score=167.01 Aligned_cols=143 Identities=22% Similarity=0.347 Sum_probs=119.0
Q ss_pred cHHHHHHHhcccc--cccccceeeeEecCCCCCcccccceEEee--ecCCeEEEEEeeeecCCCcccccceeEEEeee--
Q 006667 236 TVDEIKAVMSKEH--TETTEETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVSVR-- 309 (636)
Q Consensus 236 ~~d~I~~~L~~~~--~~~~e~~~DIYLlpPt~df~~tdeaLRiR--~~dg~~~Ltykgp~~d~~fiikPR~efev~v~-- 309 (636)
-.+.+...|.+.. ......+.|+||..|+. .|||+| ..++++.||||+|. ++.+ +.+.|+++.+.
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~g~~--k~~~E~e~~v~d~ 88 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-DENN--EEFYEVEFEIGDF 88 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-SSSS--CEEEEEEEEESCH
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-CCCc--cceeEEEEEeCCH
Confidence 4577777787643 23344577999999976 899999 56899999999999 8776 88889888884
Q ss_pred --chhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEecc------cHHHHHHHHHHcCCCCC-cccchh
Q 006667 310 --LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDGS-YVPRTY 380 (636)
Q Consensus 310 --~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg~------~r~~v~~~~~~Lgl~G~-~i~kSY 380 (636)
+...|..|||.+.+.+.|.|..|..++++|+||+++||| .|+|||.. .++.+.+++++|||+.+ .+++||
T Consensus 89 ~~~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY 167 (179)
T 1yem_A 89 EKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIG-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLY 167 (179)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCT
T ss_pred HHHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCC-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhH
Confidence 344478999999999999999999999999999999999 69999954 38899999999999986 899999
Q ss_pred HHHHHhhhc
Q 006667 381 IEQIQLEKL 389 (636)
Q Consensus 381 LEli~lek~ 389 (636)
+||+ +++.
T Consensus 168 ~eLl-~~~~ 175 (179)
T 1yem_A 168 LELI-NELS 175 (179)
T ss_dssp TTTC-----
T ss_pred HHHH-Hhhh
Confidence 9999 6654
No 15
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.70 E-value=1.6e-16 Score=152.15 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=112.5
Q ss_pred HHHHHHhcccc---cccccceeeeEecCCCCCcccccceEEeeec--CCeEEEEEeeeecCCCcccccceeEEEee----
Q 006667 238 DEIKAVMSKEH---TETTEETYDIYLLPPGEDPDACQSYLRMRNR--DGKYNLMFEEWVTDSPFIISPRITFEVSV---- 308 (636)
Q Consensus 238 d~I~~~L~~~~---~~~~e~~~DIYLlpPt~df~~tdeaLRiR~~--dg~~~Ltykgp~~d~~fiikPR~efev~v---- 308 (636)
+.+.+.|.... ......+.|+||..|+.+++..+.+||+|.. ++..+|+||||+. +.|.++.+
T Consensus 21 ~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~~--------~~e~e~~v~~~~ 92 (179)
T 3n10_A 21 TTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGA--------ERCEASNIEDVS 92 (179)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSS--------SBEEEEECSCHH
T ss_pred HHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCCcc--------ccceeeccCCHH
Confidence 44555554432 2223445699999999999999999999985 5778999999854 34556666
Q ss_pred echhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEecc---------cHHHHHHHHHHcCCCC-Ccccc
Q 006667 309 RLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDG-SYVPR 378 (636)
Q Consensus 309 ~~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg~---------~r~~v~~~~~~Lgl~G-~~i~k 378 (636)
.+...|..+||.+++.+.|.|+.|..+++.|++|+|+|||. |+|||.. .++.+.+++++|||+. +.+++
T Consensus 93 ~~~~~l~~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG~-f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~ 171 (179)
T 3n10_A 93 KVQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPR 171 (179)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCS
T ss_pred HHHHHHHhCCCeEEEEEEEEEEEEEECCEEEEEEeccCCCc-EEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhccee
Confidence 44455889999999999999999999999999999999995 9999942 4678999999999986 57999
Q ss_pred hhHHHH
Q 006667 379 TYIEQI 384 (636)
Q Consensus 379 SYLEli 384 (636)
||+|||
T Consensus 172 sY~eLL 177 (179)
T 3n10_A 172 SYRQLL 177 (179)
T ss_dssp CHHHHH
T ss_pred cHHHHh
Confidence 999998
No 16
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.68 E-value=3.7e-16 Score=147.54 Aligned_cols=138 Identities=22% Similarity=0.353 Sum_probs=114.3
Q ss_pred HHHHHHHhcccc--cccccceeeeEecCCCCCcccccceEEeee--cCCeEEEEEeeeecCCCcccccceeEEEeeech-
Q 006667 237 VDEIKAVMSKEH--TETTEETYDIYLLPPGEDPDACQSYLRMRN--RDGKYNLMFEEWVTDSPFIISPRITFEVSVRLL- 311 (636)
Q Consensus 237 ~d~I~~~L~~~~--~~~~e~~~DIYLlpPt~df~~tdeaLRiR~--~dg~~~Ltykgp~~d~~fiikPR~efev~v~~~- 311 (636)
.+.+...+.... ......+.|+||..|.. .+||+|. .++++.||||+|. ++.. +.|.|+++.+...
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~-~g~~--~~~~E~e~~i~~~~ 81 (165)
T 2dc4_A 11 FEDIKRKIEGLGAKFFGIEEQEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL-DKRN--EEFYELEFEVQDPE 81 (165)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC-SSSS--CEEEEEEEEBSCHH
T ss_pred HHHHHHHHHhcCCCcCcceeEEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC-CCCc--eeeeEEEEEcCCHH
Confidence 455666665422 12234577999998866 8999994 5899999999999 7666 8888999888433
Q ss_pred ---hhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEecc------cHHHHHHHHHHcCCCCC-cccchhH
Q 006667 312 ---GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDGS-YVPRTYI 381 (636)
Q Consensus 312 ---~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg~------~r~~v~~~~~~Lgl~G~-~i~kSYL 381 (636)
..|..|||.+...+.|.|..|..+++.|++|.++|+| .|+|||-. .++.+.+++++|||..+ .+++||+
T Consensus 82 ~~~~~L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ 160 (165)
T 2dc4_A 82 GAIELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAG-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYI 160 (165)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHH
T ss_pred HHHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEecCCCc-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHH
Confidence 3357889999999999999999999999999999999 69999954 48899999999999986 8999999
Q ss_pred HHH
Q 006667 382 EQI 384 (636)
Q Consensus 382 Eli 384 (636)
||+
T Consensus 161 ell 163 (165)
T 2dc4_A 161 ELI 163 (165)
T ss_dssp HHC
T ss_pred HHh
Confidence 998
No 17
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.61 E-value=8.3e-16 Score=147.23 Aligned_cols=160 Identities=16% Similarity=0.214 Sum_probs=110.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc-c---cc--CCCCCcccccHHHHHHHHHhhhCCCceeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-I---ID--GNFDDPRLTDYDTLLENIRGLKEGKAVQVP 114 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r-~---~d--gnfD~P~afD~dlL~~~L~~Lk~Gk~I~iP 114 (636)
..+|+|+|++||||||+|+.|++.++++.++++|+|+.... . .. .+++.+.++|...+.+.+..+.++. .+|
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~ 98 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA--RHS 98 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH--TTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC--CCC
Confidence 46899999999999999999999886699999999865322 1 11 2456677889888888776654321 112
Q ss_pred eeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcC
Q 006667 115 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 193 (636)
Q Consensus 115 vYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~V 193 (636)
... . ......+.++||+||.+++. +.+.+.+|..||+++|.++++.|+..| +++.+++..+|...+
T Consensus 99 ~~~---~-----~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R-----~~~~e~~~~~~~~~~ 165 (207)
T 2qt1_A 99 VVS---T-----DQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTR-----VYQPPDSPGYFDGHV 165 (207)
T ss_dssp SCC---C----------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHS-----CCSSCCCTTHHHHTH
T ss_pred CcC---C-----CeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHc-----CCCccchHHHHHHHH
Confidence 111 0 11113456899999998886 578889999999999999988766554 344444445666677
Q ss_pred CcchhhhccCCcCCccEE--EeCC
Q 006667 194 YPMYKAFIEPDLQTAHIK--IINK 215 (636)
Q Consensus 194 rP~~ekfIePtk~~ADII--IpN~ 215 (636)
+|.|..+++.....||.+ |.|+
T Consensus 166 ~~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 166 WPMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp HHHHHHHHHHGGGCSSCCEEEETT
T ss_pred hHHHHHHHHHHHhcCCeEEEecCC
Confidence 888777665555667766 5543
No 18
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.60 E-value=2.3e-15 Score=145.97 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=114.9
Q ss_pred HHHHHHHhccccc---ccccceeeeEecCCCCCcccccceEEeeecC--CeEEEEEeeeecCCCcccccceeEEEee--e
Q 006667 237 VDEIKAVMSKEHT---ETTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVSV--R 309 (636)
Q Consensus 237 ~d~I~~~L~~~~~---~~~e~~~DIYLlpPt~df~~tdeaLRiR~~d--g~~~Ltykgp~~d~~fiikPR~efev~v--~ 309 (636)
.+.+...|..... .....+.|+||-.|+.+++..+.|||+|..+ +...+|+|+|..++.. |++|.- .
T Consensus 22 ~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~ 95 (189)
T 2aca_A 22 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCE------ATNITKLDS 95 (189)
T ss_dssp HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTTBEE------EEEBSCHHH
T ss_pred HHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcCceE------EEecCCHHH
Confidence 5566777766433 2344567999999999999999999999853 5689999999876532 333321 3
Q ss_pred chhhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEecc---------cHHHHHHHHHHcCCCCC-cccch
Q 006667 310 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGS-YVPRT 379 (636)
Q Consensus 310 ~~~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIeg~---------~r~~v~~~~~~Lgl~G~-~i~kS 379 (636)
+...|..+||.+++.+.+.|+.|..+++.|+||.+++|| .|+|||-. .++.+.+++.+|||... .+++|
T Consensus 96 ~~~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~s 174 (189)
T 2aca_A 96 AQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRS 174 (189)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSC
T ss_pred HHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhh
Confidence 444577899999999999999999999999999999999 59999922 47899999999999864 69999
Q ss_pred hHHHHHhh
Q 006667 380 YIEQIQLE 387 (636)
Q Consensus 380 YLEli~le 387 (636)
|+||+ ++
T Consensus 175 Y~~ll-~~ 181 (189)
T 2aca_A 175 YKEIL-SA 181 (189)
T ss_dssp TTTSS-CC
T ss_pred HHHHH-Hh
Confidence 99998 44
No 19
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.56 E-value=1.1e-15 Score=148.52 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=103.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC---c---cc----ccCCCCCcccccHHHHHHHH----HhhhC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---S---RI----IDGNFDDPRLTDYDTLLENI----RGLKE 107 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~---~---r~----~dgnfD~P~afD~dlL~~~L----~~Lk~ 107 (636)
.+|+|+|++||||||+|+.|++.+ ++.+|++|.|... + .. -...|+ +..+|.+.|.+.+ ..++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~~~ 90 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENLKK 90 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHHHH
Confidence 478999999999999999999988 5999999998432 1 00 012345 6788888777632 22344
Q ss_pred CCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHH
Q 006667 108 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 187 (636)
Q Consensus 108 Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~ 187 (636)
.+.+.+|.+......+.. ...++||+|+.+++...+.+.+|.+|||++|.++++.|++ -.
T Consensus 91 l~~i~hP~i~~~~~~~~~------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli--------------~~ 150 (192)
T 2grj_A 91 LELLVHPLMKKRVQEIIN------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNR--------------EA 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHH------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCS--------------SH
T ss_pred HHhhhCHHHHHHHHHHHH------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHH--------------Hh
Confidence 456777877654432211 1146999999988887788899999999999999876651 12
Q ss_pred HHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 188 QISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 188 qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
|+ | .|+++.+++||+||.|+.
T Consensus 151 q~-----~---~~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 151 DR-----R---LKFQEDIVPQGIVVANNS 171 (192)
T ss_dssp HH-----H---HTTCTTCCCCSEEEECSS
T ss_pred cC-----C---chhhhHHhcCCEEEECCC
Confidence 22 1 245677899999998764
No 20
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.52 E-value=7.2e-15 Score=149.60 Aligned_cols=163 Identities=11% Similarity=0.141 Sum_probs=106.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CCcc-----c---ccCCCCCc-ccccHHHHHHHH----
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSR-----I---IDGNFDDP-RLTDYDTLLENI---- 102 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~~r-----~---~dgnfD~P-~afD~dlL~~~L---- 102 (636)
...+|+|+|++||||||+|+.|++ + ++.+|++|.+. .+.. . ....+.+| ..+|...+...+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~-l-g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN-L-GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH-H-TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-C-CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 356899999999999999999995 5 58999999872 1110 0 00112222 246665553221
Q ss_pred HhhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCH
Q 006667 103 RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 182 (636)
Q Consensus 103 ~~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrsl 182 (636)
..+...+.+.+|.+......+.. .....+.++||+||.+++...+.+.+|.+|||++|.++++.|+..|+ |++.
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~s~ 225 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GLSE 225 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CCCH
T ss_pred HHHHHhhcccChHHHHHHHHHHH--HHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CCCH
Confidence 11222233455654332222211 11123357999999988766677889999999999999988877775 7899
Q ss_pred HHHHHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 183 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 183 EeVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
+++..++..+ ++.. .++ ..||++|.|+.
T Consensus 226 e~~~~ri~~q-~~~~-~~~----~~AD~vIdn~~ 253 (281)
T 2f6r_A 226 AAAQSRLQSQ-MSGQ-QLV----EQSNVVLSTLW 253 (281)
T ss_dssp HHHHHHHHTS-CCHH-HHH----HTCSEEEECSS
T ss_pred HHHHHHHHHc-CChH-hhH----hhCCEEEECCC
Confidence 9999888776 4543 333 46899998653
No 21
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.51 E-value=2.1e-15 Score=159.20 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=106.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc--cCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeecc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY--NDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 119 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY--~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~ 119 (636)
++|+|+||+||||||||..|++.++ +.+|++|+| |+.-.. ++ ..|..-+.+.+..+|..+..+.. .+|+|+|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~qvYr~~~i--~T-akp~~eE~~~v~hhl~di~~~~~-~~~~~dF~ 82 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSMQVYQGMDI--GT-AKVTTEEMEGIPHYMIDILPPDA-SFSAYEFK 82 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSSTTBTTCCT--TT-TCCCTTTTTTCCEESSSCBCTTS-CCCHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-Cceeccccccccccccc--cc-cCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHH
Confidence 5899999999999999999999995 899999998 542111 00 01111111111123334455555 67888888
Q ss_pred CCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEe-CChh--hHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcc
Q 006667 120 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT-GGVH--FDLVKRVFRDIQRVGQEPEEIIHQISETVYPM 196 (636)
Q Consensus 120 t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVD-ad~D--~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~ 196 (636)
.+.+.....+...+..+||++|..++.+.+++.+| +|++ +|.+ +|+.+|+.| ..++|+ +++.+|+..+.|.
T Consensus 83 ~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~---~~l~~~L~~vdP~ 156 (340)
T 3d3q_A 83 KRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN---NKLHEYLASFDKE 156 (340)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH---HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH---HHHHHHHHhhCcH
Confidence 76553212222356678889999866677777776 7888 8888 788999999 888886 4789999999999
Q ss_pred hhhhccCC
Q 006667 197 YKAFIEPD 204 (636)
Q Consensus 197 ~ekfIePt 204 (636)
+.++|.|.
T Consensus 157 ~a~~I~p~ 164 (340)
T 3d3q_A 157 SAKDIHPN 164 (340)
T ss_dssp HHHHSCTT
T ss_pred HHhhcCcc
Confidence 99999884
No 22
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.40 E-value=2e-13 Score=135.35 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=111.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc----CCc-c----cc----cCCCCCcccccHHHHHHHHH----hh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSS-R----II----DGNFDDPRLTDYDTLLENIR----GL 105 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~----~~~-r----~~----dgnfD~P~afD~dlL~~~L~----~L 105 (636)
-|||+|+.||||||+++.|++ + ++.+|+.|... .+. . .. ..-|+....+|-..|.+.+. .+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~-g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-R-GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 478899999999999999998 6 69999999852 111 1 00 11233345688777776553 23
Q ss_pred hCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH
Q 006667 106 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 184 (636)
Q Consensus 106 k~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe 184 (636)
+.-+.+.+|..-...... +...+.+++|+|..++|. ..+.+++|..|||++|.++++.|.+.|| |.+.++
T Consensus 89 ~~L~~i~HP~I~~~~~~~-----~~~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s~ee 159 (210)
T 4i1u_A 89 RRLEAITHPLIRAETERE-----ARDAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----GFTREQ 159 (210)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHTCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----CCCHHH
T ss_pred HHHHHHhhHHHHHHHHHH-----HHhcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----CCCHHH
Confidence 333455666533221111 111245689999999998 7888899999999999999988887776 899999
Q ss_pred HHHHHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 185 IIHQISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 185 Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
+..++..+ .|.. +.++.||+||.|+
T Consensus 160 a~~ri~~Q-~~~e-----ek~~~AD~VIdN~ 184 (210)
T 4i1u_A 160 VEAIIARQ-ATRE-----ARLAAADDVIVND 184 (210)
T ss_dssp HHHHHHHS-CCHH-----HHHHTCSEEEECS
T ss_pred HHHHHHHc-CChH-----HHHHhCCEEEECC
Confidence 99988766 4553 3358999999876
No 23
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.35 E-value=2.9e-12 Score=123.29 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=88.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc----ccCCCCCcccccHHHHHHHHHhh------------
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI----IDGNFDDPRLTDYDTLLENIRGL------------ 105 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~----~dgnfD~P~afD~dlL~~~L~~L------------ 105 (636)
.+|+|+|++||||||+++.|++.+ ++.+++.|+++..... ...+++++ ..+.+....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~-g~~~~d~g~i~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL-QWHLLDSGAIYRVLALAALHHHVDVASE-----DALVPLASHLDVRFVSTNGNLE 79 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHHHHHHHHHHHTCCTTCH-----HHHHHHHHTCCEEEEEETTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCCcccCcceeehhhHHHHHcCCCccCH-----HHHHHHHHhCceeeeccCCCce
Confidence 479999999999999999999988 4889999997642110 11122111 1111111100
Q ss_pred --hCCCceeeeeeecc---------CCcccCc----ceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHH
Q 006667 106 --KEGKAVQVPIYDFK---------SSSRIGY----RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR 170 (636)
Q Consensus 106 --k~Gk~I~iPvYDf~---------t~~R~~~----eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RR 170 (636)
..|..+.-+..+.. .+..... ....+.....+|+||.... ..+.+.+|++|||+++.++++.|+
T Consensus 80 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~-~~~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 80 VILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG-TVVFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EEETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHH
T ss_pred EEECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc-ceEecCCCEEEEEeCCHHHHHHHH
Confidence 00100000000000 0000000 0001134568999998533 345567899999999999988776
Q ss_pred HhhhhhhcCC--CHHHHHHHHHhcCCcchhhhccCCcCC-ccEEEeCC
Q 006667 171 VFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQT-AHIKIINK 215 (636)
Q Consensus 171 I~RDi~eRGr--slEeVl~qyl~~VrP~~ekfIePtk~~-ADIIIpN~ 215 (636)
..+ ..+||+ +.+++.+++..++.+.|.++++|.... ++++|.|+
T Consensus 159 ~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~ 205 (227)
T 1cke_A 159 MLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST 205 (227)
T ss_dssp HHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred HHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence 543 346677 788999999888888888888887665 34777654
No 24
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.33 E-value=4.5e-13 Score=127.44 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=102.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC---c-cc-----c----cCCCCCcccccHHHHHHHHH----h
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---S-RI-----I----DGNFDDPRLTDYDTLLENIR----G 104 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~---~-r~-----~----dgnfD~P~afD~dlL~~~L~----~ 104 (636)
.+|+|+|++||||||+++.|++ + ++.++++|.++.. + .. . ...|+.+..++...|...+. .
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 79 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEK 79 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-CCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHH
Confidence 4799999999999999999999 7 6999999997431 1 00 0 01222223455544433210 0
Q ss_pred hhCCCceeeeeeeccCCcccCcceeecCCC-ceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH
Q 006667 105 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSS-RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 183 (636)
Q Consensus 105 Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~-dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE 183 (636)
++.-..+..|.+...... .+...+. .+||+||.+++...+.+.+|..|||++|.++++.|...| |.+.+
T Consensus 80 ~~~l~~l~~~~v~~~~~~-----~~~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~~~ 149 (204)
T 2if2_A 80 LRKLEEITHRALYKEIEK-----ITKNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-----GMSEE 149 (204)
T ss_dssp HHHHHHHHHHHHTTTHHH-----HHHHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-----CCCHH
T ss_pred HHHHHHhhCHHHHHHHHH-----HHHhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-----CCCHH
Confidence 000001112222111100 0000122 689999998776667778999999999999987665543 78888
Q ss_pred HHHHHHHhcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcc
Q 006667 184 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 246 (636)
Q Consensus 184 eVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~ 246 (636)
++.+++..+ .|.. +....||++|.|+.+ .+-+.+.|.+.+.+
T Consensus 150 ~~~~~~~~~-~~~~-----~~~~~ad~vId~~~~---------------~~~~~~~i~~~l~~ 191 (204)
T 2if2_A 150 DFERRWKKQ-MPIE-----EKVKYADYVIDNSGS---------------IEETYKQVKKVYEE 191 (204)
T ss_dssp HHHHHHTTS-CCHH-----HHGGGCSEECCCSSC---------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CChh-----HHHhcCCEEEECCCC---------------HHHHHHHHHHHHHH
Confidence 877777554 3432 234678998865421 23456667676654
No 25
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.33 E-value=3.3e-13 Score=128.82 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=91.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC---cc---c-----ccC--CCCCcccccHHHHHHHHH----h
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---SR---I-----IDG--NFDDPRLTDYDTLLENIR----G 104 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~---~r---~-----~dg--nfD~P~afD~dlL~~~L~----~ 104 (636)
.+|+|+|++||||||+++.|++ + +..+++.|.++.. +. . ..+ .|.....++...+...+. .
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l-g~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L-GVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T-TCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C-CCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 4799999999999999999988 6 5889999987421 10 0 001 111111233332222110 0
Q ss_pred hhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHH
Q 006667 105 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 184 (636)
Q Consensus 105 Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEe 184 (636)
+.....+.+|.+...... .+.......+|++|.+++...+.+.+|.+|||++|.++++.|...|+ |.+.++
T Consensus 81 ~~~l~~~~~p~v~~~~~~-----~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e~ 151 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQ-----KLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFEQ 151 (206)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHHH
T ss_pred HHHHHhccCHHHHHHHHH-----HHHhcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 000011223443321111 11111235889999877764577889999999999999887766664 778888
Q ss_pred HHHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 185 IIHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 185 Vl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
+.+++..+ .|.. |.++.||++|.|+.
T Consensus 152 ~~~r~~~q-~~~~-----~~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 152 IQRIMNSQ-VSQQ-----ERLKWADDVINNDA 177 (206)
T ss_dssp HHHHHHHS-CCHH-----HHHHHCSEEEECCS
T ss_pred HHHHHHhc-CChH-----HHHHhCCEEEECCC
Confidence 88888664 3432 33458999998654
No 26
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.27 E-value=1.3e-11 Score=119.08 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=96.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCC---c-c-----cc----cCCCCCcccccHHHHHHHHHh---
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---S-R-----II----DGNFDDPRLTDYDTLLENIRG--- 104 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~---~-r-----~~----dgnfD~P~afD~dlL~~~L~~--- 104 (636)
..+|+|+|++||||||+++.|++ + ++.+++.|.+... + . .. ...|+....++...+...+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L-GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c-CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 35899999999999999999998 7 5899999986321 1 0 00 011332334555544432210
Q ss_pred -hhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH
Q 006667 105 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 183 (636)
Q Consensus 105 -Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE 183 (636)
+...+.+..|.+....... +......++|+++.+++...+.+.+|..|||++|.++++.|...|+ |.+.+
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~-----~~~~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~~ 152 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQ-----IQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD----DVTRE 152 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----TCCHH
T ss_pred HHHHHHHhHCHHHHHHHHHH-----HHhcCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 0001122234332111100 0001235788899777654467789999999999999877665553 67777
Q ss_pred HHHHHHHhcCCcchhhhccCCcCCccEEEeCCC
Q 006667 184 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 184 eVl~qyl~~VrP~~ekfIePtk~~ADIIIpN~f 216 (636)
++..++..+ .+.+. ....||++|.|+.
T Consensus 153 ~~~~~~~~~-~~~~~-----~~~~ad~vId~~~ 179 (218)
T 1vht_A 153 HVEQILAAQ-ATREA-----RLAVADDVIDNNG 179 (218)
T ss_dssp HHHHHHHHS-CCHHH-----HHHHCSEEEECSS
T ss_pred HHHHHHHhc-CChHH-----HHHhCCEEEECCC
Confidence 777777654 44432 1356899998664
No 27
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.26 E-value=4.3e-12 Score=115.11 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=88.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 121 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~ 121 (636)
.+|+|+|++||||||+|+.| +.+ +..++++|++........+ +...++..+.+.+.... |..+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~-------- 66 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDVVRKRYSIEA----KPGERLMDFAKRLREIY-GDGVVA-------- 66 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHHH-CTTHHH--------
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhhC-CHHHHH--------
Confidence 47999999999999999999 778 5889999886542111111 11122222222222110 111000
Q ss_pred cccCcceeecCCCceEEEEehhhhh--hcccCC---ccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcc
Q 006667 122 SRIGYRTLEVPSSRIVIIEGIYALS--EKLRPL---IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPM 196 (636)
Q Consensus 122 ~R~~~eti~v~~~dVIIVEGiyaL~--~eLRdl---~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~ 196 (636)
.... ..+.....+.||++|..... ..++.. .+..|||++|.++++.|...|+-...+.+.+++.+++......
T Consensus 67 ~~~~-~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~- 144 (179)
T 3lw7_A 67 RLCV-EELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKL- 144 (179)
T ss_dssp HHHH-HHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHH-
T ss_pred HHHH-HHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhcc-
Confidence 0000 11111445789999973322 233333 3599999999999888877776545567888888887432111
Q ss_pred hhhhccCCcCCccEEEeCCC
Q 006667 197 YKAFIEPDLQTAHIKIINKF 216 (636)
Q Consensus 197 ~ekfIePtk~~ADIIIpN~f 216 (636)
.+.+....||++|.|+.
T Consensus 145 ---~~~~~~~~ad~vId~~~ 161 (179)
T 3lw7_A 145 ---GIGEVIAMADYIITNDS 161 (179)
T ss_dssp ---THHHHHHTCSEEEECCS
T ss_pred ---ChHhHHHhCCEEEECCC
Confidence 12344578999998653
No 28
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.25 E-value=2.1e-11 Score=119.69 Aligned_cols=168 Identities=12% Similarity=0.149 Sum_probs=102.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc----cccCCCCCcccccHHHHHHHHHhhh---------
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR----IIDGNFDDPRLTDYDTLLENIRGLK--------- 106 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r----~~dgnfD~P~afD~dlL~~~L~~Lk--------- 106 (636)
+..+|+|+|++||||||+++.|++.+ ++.+++.|.++.... ....+++++ +.+.+.+..+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l-g~~~~d~d~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~f~~~~~~ 88 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF-GFTYLDTGAMYRAATYMALKNQLGVEEV-----EALLALLDQHPISFGRSETG 88 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHHHHTTCCTTCH-----HHHHHHHHHSCCEEEEETTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-CCceecCCCeeEcceeeeeccCCCcccH-----HHHHHHHHhccccccccCCc
Confidence 34578999999999999999999988 588999999864211 011233322 22323332211
Q ss_pred ------CCCceeeeeee---------ccCCccc----CcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHH
Q 006667 107 ------EGKAVQVPIYD---------FKSSSRI----GYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 167 (636)
Q Consensus 107 ------~Gk~I~iPvYD---------f~t~~R~----~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL 167 (636)
.|+.+....-. ...+... ......+.....+|++|..... .+.+.+|++|||++|.++++
T Consensus 89 ~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~~ 167 (236)
T 1q3t_A 89 DQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT-VVLPQAELKIFLVASVDERA 167 (236)
T ss_dssp EEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS-SSGGGCSEEEEEECCHHHHH
T ss_pred cceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh-hhccCCCEEEEEECCHHHHH
Confidence 11111000000 0000000 0000012234578889986532 24456799999999999998
Q ss_pred HHHHhhhhhhcCC--CHHHHHHHHHhcCCcchhhhccCCcCCcc-EEEeCC
Q 006667 168 VKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH-IKIINK 215 (636)
Q Consensus 168 ~RRI~RDi~eRGr--slEeVl~qyl~~VrP~~ekfIePtk~~AD-IIIpN~ 215 (636)
.|++.|. ..||+ +.+++.+++..+.++.+.++++|....+| ++|.|+
T Consensus 168 ~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 168 ERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 8876664 34554 88888888887777887788888887777 888654
No 29
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.25 E-value=1.5e-11 Score=116.28 Aligned_cols=156 Identities=16% Similarity=0.159 Sum_probs=90.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc----ccCCCCCcccccHHHHHHHHHhhh------------
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI----IDGNFDDPRLTDYDTLLENIRGLK------------ 106 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~----~dgnfD~P~afD~dlL~~~L~~Lk------------ 106 (636)
+|+|+|++||||||+|+.|++.+ ++.++++|.++..... ...+++++.. +.+.+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l-g~~~~d~d~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 77 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL-GVPYLSSGLLYRAAAFLALRAGVDPGDEEG-----LLALLEGLGVRLLAQAEGNRV 77 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHHHHHHHHHHHHHTCCTTCHHH-----HHHHHHHTTCEEECCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-CCceeccchHHHhhhhhhHhcCCCCCCHHH-----HHHHHHhCceeeeecCCCceE
Confidence 89999999999999999999988 4889999997642110 1123443322 222222211
Q ss_pred --CCCceeeeeeec---------cCCcccCc---cee-ecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHH
Q 006667 107 --EGKAVQVPIYDF---------KSSSRIGY---RTL-EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV 171 (636)
Q Consensus 107 --~Gk~I~iPvYDf---------~t~~R~~~---eti-~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI 171 (636)
.|+.+..+.... ..|..... +.+ .+. ..+|+||..++ ..+.+.+|++|||++|.++++.|+.
T Consensus 78 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~ 154 (208)
T 3ake_A 78 LADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRA 154 (208)
T ss_dssp EETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHH
T ss_pred EECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHH
Confidence 111110000000 00000000 000 012 57899999877 4566779999999999999988777
Q ss_pred hhhhhhcCCCHHHHHHHHHhcCCcchhhhccCCcCCcc-EEEeCC
Q 006667 172 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKIINK 215 (636)
Q Consensus 172 ~RDi~eRGrslEeVl~qyl~~VrP~~ekfIePtk~~AD-IIIpN~ 215 (636)
.|+ +.+.+++.+.+..+....+..+ ...|| ++|.|+
T Consensus 155 ~r~----~~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id~~ 191 (208)
T 3ake_A 155 RER----PQAYEEVLRDLLRRDERDKAQS----APAPDALVLDTG 191 (208)
T ss_dssp HTS----SSCHHHHHHHHHHHHHTC--CC----CCCTTCEEEETT
T ss_pred hhc----ccCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEECC
Confidence 664 3567777777764321111111 45688 888754
No 30
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.24 E-value=2.2e-12 Score=121.57 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=95.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCc--c---cccCCCCC---cccccHHHHHHHHHh----hhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--R---IIDGNFDD---PRLTDYDTLLENIRG----LKE 107 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~--r---~~dgnfD~---P~afD~dlL~~~L~~----Lk~ 107 (636)
+..+|+|+|++||||||+|+.|++. ++.++++|+++... . .....|.. ...+|...|.+.+.. +..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~--g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~ 84 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW--GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA 84 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT--TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC--CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence 4568999999999999999999997 68899999874210 0 00001200 123455544332200 000
Q ss_pred CCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHH
Q 006667 108 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 187 (636)
Q Consensus 108 Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~ 187 (636)
.+.+.+|.+. ..+.. .....+..+||+||.+++...+.+.+|..|||++|.++++.|...|+ |.+.+++..
T Consensus 85 l~~~~~~~i~---~~~i~--~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~----~~~~~~~~~ 155 (203)
T 1uf9_A 85 LEAVVHPEVR---RLLME--ELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARS----GLSREEVLA 155 (203)
T ss_dssp HHHHHHHHHH---HHHHH--HHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTT----CCTTHHHHH
T ss_pred HHHHhChHHH---HHHHH--HhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHH
Confidence 0112233322 00100 00112357999999877766667788999999999999877766553 567677766
Q ss_pred HHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 188 QISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 188 qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
++..+ .+.+. ....||++|.|+
T Consensus 156 ~i~~~-~~~~~-----~~~~ad~vId~~ 177 (203)
T 1uf9_A 156 RERAQ-MPEEE-----KRKRATWVLENT 177 (203)
T ss_dssp HHTTS-CCHHH-----HHHHCSEEECCS
T ss_pred HHHHC-CChhH-----HHHhCCEEEECC
Confidence 66543 44432 235789988654
No 31
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.20 E-value=7.4e-11 Score=117.78 Aligned_cols=174 Identities=13% Similarity=0.093 Sum_probs=91.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc--cccCCCCCcccccHHHHHHHHHhhhC--C--Cceee
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDPRLTDYDTLLENIRGLKE--G--KAVQV 113 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r--~~dgnfD~P~afD~dlL~~~L~~Lk~--G--k~I~i 113 (636)
+..+|+|.|++||||||+++.|++.| +...++.|.+++.-. ......+..+......+...+...-. + ..+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L-g~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL-NWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT-TCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc-CCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 35689999999999999999999999 478888888652100 00011111111122222211100000 0 00000
Q ss_pred eeeeccCCcccCc--------------------ceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhh
Q 006667 114 PIYDFKSSSRIGY--------------------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR 173 (636)
Q Consensus 114 PvYDf~t~~R~~~--------------------eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~R 173 (636)
...+....-+... ....+....-+|++|-.+.+- +.+-.|++|||+++.++|..||..+
T Consensus 105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~ 183 (252)
T 4e22_A 105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQ 183 (252)
T ss_dssp TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHH
Confidence 0011111100000 000123345688898665432 3445799999999999998887764
Q ss_pred hhhh-cCCCHHHHHHHHHhcCCcchhhhccCCcCCcc-EEEeCC
Q 006667 174 DIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKIINK 215 (636)
Q Consensus 174 Di~e-RGrslEeVl~qyl~~VrP~~ekfIePtk~~AD-IIIpN~ 215 (636)
...+ .+.+.+++.+++..+......+.+.|.+.+|| ++|.++
T Consensus 184 l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts 227 (252)
T 4e22_A 184 LQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDST 227 (252)
T ss_dssp HHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECS
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECc
Confidence 3332 35688999999988888888888999999999 777643
No 32
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=99.18 E-value=1.4e-10 Score=116.02 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=104.8
Q ss_pred cceeeeEecCCCCCcccccceEEeeecCCeEEEEEeeeecCCCcccccceeE---EEe--------------e----ech
Q 006667 253 EETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITF---EVS--------------V----RLL 311 (636)
Q Consensus 253 e~~~DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d~~fiikPR~ef---ev~--------------v----~~~ 311 (636)
..+.|+||-.|..+++..+.|||+|..++ +|+|.|-..+.. ..+-|+ +.. + .+.
T Consensus 52 ~~q~n~YfDTpd~~L~~~~~aLRiR~~~~---~tlK~p~~~g~~--~~~~ey~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (234)
T 3bhd_A 52 VTFRDTYYDTPELSLMQADHWLRRREDSG---WELKCPGAAGVL--GPHTEYKELTAEPTIVAQLCKVLRADGLGAGDVA 126 (234)
T ss_dssp EEEEEEEEECTTCHHHHTTCEEEEETTTE---EEEEEESSBTTB--CTTSEEEEECSHHHHHHHHHHHHTC---CCSSHH
T ss_pred ceEEEEEeeCCChHHHhCCcEEEEECCCC---eEEecCCccCcc--CCcceeccccCccchhhhhhhhhcCCccchhHHH
Confidence 34669999999999999999999998774 889988655411 112222 221 1 222
Q ss_pred hhhhhcCCeEEEEEEeeeeeeee--------C-CEEEEeecccccCcceEEEe---------cccHHHHHHHHHHcCCCC
Q 006667 312 GGLMALGYTIATILKRSSHIFYD--------D-RVCVKTDWLEQLNRKYVQVQ---------GRDRLYVKYVGEQLGLDG 373 (636)
Q Consensus 312 ~gL~~LGy~~aa~V~R~re~y~~--------~-~~~i~lD~ve~Lg~~FveIe---------g~~r~~v~~~~~~Lgl~G 373 (636)
..|..+||.+++.+.+.|+.|.. + ++.|+||.++ +|.+|+||| ...++.+.+++.+|||..
T Consensus 127 ~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~ 205 (234)
T 3bhd_A 127 AVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPA 205 (234)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCT
T ss_pred HHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCc
Confidence 33667999999999999999988 8 9999999999 997799999 236778999999999998
Q ss_pred CcccchhHHHHHhhhccc
Q 006667 374 SYVPRTYIEQIQLEKLVN 391 (636)
Q Consensus 374 ~~i~kSYLEli~lek~~~ 391 (636)
+.++++|++.+ |+...+
T Consensus 206 ~~~~~~k~~~~-l~~~~~ 222 (234)
T 3bhd_A 206 QETAPAKLIVY-LQRFRP 222 (234)
T ss_dssp TCCCCCHHHHH-HHHHCH
T ss_pred cccchHHHHHH-HHHhCH
Confidence 89999999998 776543
No 33
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.14 E-value=5.4e-11 Score=114.31 Aligned_cols=162 Identities=13% Similarity=0.131 Sum_probs=94.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc---cccCC--------------CC---------------C
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR---IIDGN--------------FD---------------D 89 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r---~~dgn--------------fD---------------~ 89 (636)
.+|+|+|++||||||+++.|++.+ ++.+++.|.+++.-. ...+. |. .
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~-g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~~ 82 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL-SMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDV 82 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT-TCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCccc
Confidence 479999999999999999999999 589999998753200 00000 10 0
Q ss_pred cccccHHHHHHHHHhhhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHH
Q 006667 90 PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK 169 (636)
Q Consensus 90 P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~R 169 (636)
+..+..+.+.+.+..+. .+|........ ....+.....+|++|..+ ...+.+.+|++|||++|.++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~-----~~p~v~~~~~~----~~~~~~~~~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R 152 (219)
T 2h92_A 83 TDFLRNNDVTQHVSYVA-----SKEPVRSFAVK----KQKELAAEKGIVMDGRDI-GTVVLPDADLKVYMIASVEERAER 152 (219)
T ss_dssp GGGSSSSHHHHHHHHHH-----TSHHHHHHHHH----HHHHHHTTCCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHH
T ss_pred hhhcCcHHHHHHHHHhc-----cCHHHHHHHHH----HHHHhccCCcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHH
Confidence 00011011111111000 01110000000 000122334678888643 123456679999999999998877
Q ss_pred HHhhhhhhcCC--CHHHHHHHHHhcCCcchhhhccCCcCCcc-EEEeCC
Q 006667 170 RVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH-IKIINK 215 (636)
Q Consensus 170 RI~RDi~eRGr--slEeVl~qyl~~VrP~~ekfIePtk~~AD-IIIpN~ 215 (636)
++.+. ..||. +.+++.+++..+..+...+.+.|....|| ++|.|+
T Consensus 153 ~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~ 200 (219)
T 2h92_A 153 RYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTT 200 (219)
T ss_dssp HHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECT
T ss_pred HHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECC
Confidence 66543 35676 78888888876665666667778777777 888754
No 34
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.08 E-value=5.3e-10 Score=112.18 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=104.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc--ccCCCCCcccccHHHHHHHHHhhh-------CCCce
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI--IDGNFDDPRLTDYDTLLENIRGLK-------EGKAV 111 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~--~dgnfD~P~afD~dlL~~~L~~Lk-------~Gk~I 111 (636)
..+|+|.|++||||||+|+.|++.+ +..+++.|.+++.-.. ...+.+ .-|.+.+.+.+..+. .++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l-g~~~~d~g~~~r~~~~~~~~~gi~---~~d~~~~~~~~~~~~~~~~~~~~~~~v 84 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL-GARYLDTGAMYRIATLAVLRAGAD---LTDPAAIEKAAADAEIGVGSDPDVDAA 84 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHHHHHHHHHHHTCC---TTCHHHHHHHHHTCCEEECCCTTSCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCcccCCcHHHHHHHHHHHcCCC---chhhHHHHHHHHhCCEEEeecCCCcEE
Confidence 3489999999999999999999998 5889999997643110 111221 123333444333221 01111
Q ss_pred eeeeeeccCCcccCc--------------------ceeecCCC-ceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHH
Q 006667 112 QVPIYDFKSSSRIGY--------------------RTLEVPSS-RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR 170 (636)
Q Consensus 112 ~iPvYDf~t~~R~~~--------------------eti~v~~~-dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RR 170 (636)
...-.|....-|... ........ .-+|+||-.+..- +.+-.|++|||+++.+.|..||
T Consensus 85 ~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~-V~pda~lkifl~A~~e~Ra~Rr 163 (233)
T 3r20_A 85 FLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV-VLPDADVKIFLTASAEERARRR 163 (233)
T ss_dssp EETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC-CCTTCSEEEEEECCHHHHHHHH
T ss_pred EECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE-EcCCCCEEEEEECCHHHHHHHH
Confidence 111111111101000 00001223 5688899755431 2334689999999999998888
Q ss_pred Hhhhhhh-cCCCHHHHHHHHHhcCCcchhhhccCCcCCcc-EEEe
Q 006667 171 VFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKII 213 (636)
Q Consensus 171 I~RDi~e-RGrslEeVl~qyl~~VrP~~ekfIePtk~~AD-IIIp 213 (636)
..+...+ .+.+.+++..++..+.+....+|+.|.+.++| ++|.
T Consensus 164 ~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~ID 208 (233)
T 3r20_A 164 NAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVD 208 (233)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEE
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEE
Confidence 8665433 46799999999998888888889999988888 7665
No 35
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.99 E-value=8.1e-10 Score=105.19 Aligned_cols=153 Identities=18% Similarity=0.111 Sum_probs=87.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc---ccCCCCCcccccHHHHHHHHHhhhCCCceeeeeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI---IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 117 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~---~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYD 117 (636)
.++|+|+|++||||||+|+.|++.+ +..+|+.|.+...... ..+. .+........+..+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~l~~---------- 81 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGDALHPPENIRKMSEGI-----PLTDDDRWPWLAAIGE---------- 81 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGGGGCCHHHHHHHHHTC-----CCCHHHHHHHHHHHHH----------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCCcCcchhhHHHHhcCC-----CCCchhhHHHHHHHHH----------
Confidence 4589999999999999999999998 4889999998643111 1111 1111111112221110
Q ss_pred ccCCcccCcceeecCCCceEEEEehhhhh---hcccCCc---cEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHh
Q 006667 118 FKSSSRIGYRTLEVPSSRIVIIEGIYALS---EKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 191 (636)
Q Consensus 118 f~t~~R~~~eti~v~~~dVIIVEGiyaL~---~eLRdl~---DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~ 191 (636)
. ......+|+++.+... ..+.+.. +..|||++|.++++.|...|+. ....++++..+..
T Consensus 82 ----------~--~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~---~~~~~~~~~~~~~ 146 (202)
T 3t61_A 82 ----------R--LASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG---HFMPSSLLQTQLE 146 (202)
T ss_dssp ----------H--HTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHS---SCCCHHHHHHHHH
T ss_pred ----------H--HhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhc---cCCCHHHHHHHHH
Confidence 0 0112334555544322 2233333 6899999999998766655542 1123555555544
Q ss_pred cCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcc
Q 006667 192 TVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 246 (636)
Q Consensus 192 ~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~ 246 (636)
...| +....++++|.++.. .+-+.+.|.+.|.+
T Consensus 147 ~~~~-------~~~~~~~~~Id~~~~---------------~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 147 TLED-------PRGEVRTVAVDVAQP---------------LAEIVREALAGLAR 179 (202)
T ss_dssp HCCC-------CTTSTTEEEEESSSC---------------HHHHHHHHHHHHHH
T ss_pred hcCC-------CCCCCCeEEEeCCCC---------------HHHHHHHHHHHHHH
Confidence 4333 345678999975521 13456667677654
No 36
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.97 E-value=1.8e-10 Score=107.23 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=83.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 120 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t 120 (636)
..+|+|.|++||||||+|+.|++.+ +..+|++|++......... ......+.+.+ ..|..+..+......
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~~~~~~~~~------~~~~~~~~~~~---~~g~~~~~~~~~~~l 72 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLRDERKNPD------SQYGELIEKYI---KEGKIVPVEITISLL 72 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHCTT------STTHHHHHHHH---HTTCCCCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHHHHHhccC------ChHHHHHHHHH---HCCCcCCHHHHHHHH
Confidence 4689999999999999999999988 4889999987432110000 00001111111 123211100000000
Q ss_pred CcccCccee-ecCCCceEEEEehhhhhh---cc----cC--CccEEEEEeCChhhHHHHHHhhhhh-hcC-CCHHH---H
Q 006667 121 SSRIGYRTL-EVPSSRIVIIEGIYALSE---KL----RP--LIDLRVSVTGGVHFDLVKRVFRDIQ-RVG-QEPEE---I 185 (636)
Q Consensus 121 ~~R~~~eti-~v~~~dVIIVEGiyaL~~---eL----Rd--l~DLKIFVDad~D~RL~RRI~RDi~-eRG-rslEe---V 185 (636)
..... ..+ .......+|++|...... .+ .. .+|+.||+++|.++++.|...|+.. .|. .+.+. .
T Consensus 73 ~~~~~-~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~ 151 (196)
T 1tev_A 73 KREMD-QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKR 151 (196)
T ss_dssp HHHHH-HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHH
T ss_pred HHHHH-hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHH
Confidence 00000 000 112346788999765321 12 21 4689999999999988887777642 121 12333 3
Q ss_pred HHHHHhcCCcchhhhccCCcCCccE-EEeC
Q 006667 186 IHQISETVYPMYKAFIEPDLQTAHI-KIIN 214 (636)
Q Consensus 186 l~qyl~~VrP~~ekfIePtk~~ADI-IIpN 214 (636)
+..|.....|....|- +.+++ +|.+
T Consensus 152 ~~~~~~~~~~~~~~y~----~~~~~~~id~ 177 (196)
T 1tev_A 152 IQTYLQSTKPIIDLYE----EMGKVKKIDA 177 (196)
T ss_dssp HHHHHHHHHHHHHHHH----HTTCEEEEET
T ss_pred HHHHHHhHHHHHHHHH----hcCCEEEEEC
Confidence 4555555555433332 34676 5543
No 37
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.96 E-value=4.6e-09 Score=99.65 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=79.8
Q ss_pred ceEecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc--------------ccCCCCCcccccHHHHH
Q 006667 34 YEIVPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI--------------IDGNFDDPRLTDYDTLL 99 (636)
Q Consensus 34 ~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~--------------~dgnfD~P~afD~dlL~ 99 (636)
|...+-...+|+|+|++||||||+|+.|++.+ ++.+|++|++.+.... .++. ..|..+..+.+.
T Consensus 8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~-~~~~~~~~~~l~ 85 (203)
T 1ukz_A 8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQ-IVPQEITLALLR 85 (203)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHHHHc-CceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCC-cCCHHHHHHHHH
Confidence 33445556799999999999999999999999 5899999986432100 0111 112222222222
Q ss_pred HHHHh-hhCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhh------hhhcccCCccEEEEEeCChhhHHHHHHh
Q 006667 100 ENIRG-LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA------LSEKLRPLIDLRVSVTGGVHFDLVKRVF 172 (636)
Q Consensus 100 ~~L~~-Lk~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiya------L~~eLRdl~DLKIFVDad~D~RL~RRI~ 172 (636)
+.+.. +.. ..+.+|++|... +.......+|+.|||++|.++++.|...
T Consensus 86 ~~i~~~l~~-------------------------g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~ 140 (203)
T 1ukz_A 86 NAISDNVKA-------------------------NKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLE 140 (203)
T ss_dssp HHHHHHHHT-------------------------TCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHH
T ss_pred HHHHhhhcc-------------------------CCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh
Confidence 22211 111 113456666421 1111223479999999999998877777
Q ss_pred hhhhhcCC---CHHHHHH---HHHhcCCcchhhh
Q 006667 173 RDIQRVGQ---EPEEIIH---QISETVYPMYKAF 200 (636)
Q Consensus 173 RDi~eRGr---slEeVl~---qyl~~VrP~~ekf 200 (636)
|+.. +|+ +.+.+.. .|.....|.++.|
T Consensus 141 R~~~-~~~~~~~~e~~~~r~~~~~~~~~~~~~~~ 173 (203)
T 1ukz_A 141 RGKT-SGRSDDNIESIKKRFNTFKETSMPVIEYF 173 (203)
T ss_dssp HHHH-HCCTTCSHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccc-CCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 7532 233 3555533 4555556665544
No 38
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.89 E-value=3.3e-09 Score=98.48 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.++|+|+|++||||||+|+.|++.+ +..+++.|++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~~ 41 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLL 41 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-CCEEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCeEeeHHHHH
Confidence 3589999999999999999999988 48899999864
No 39
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.89 E-value=6.1e-09 Score=99.81 Aligned_cols=157 Identities=25% Similarity=0.274 Sum_probs=82.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc--c---cCCCCCcccccHHHHHHHHHhhhCCCceeeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI--I---DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 115 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~--~---dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPv 115 (636)
.++|+|+|+|||||||+++.|++.+++....+...-.+.++. . ++.|. +.+.+.+ .+.+|..++...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~-----~~~~~~~---~~~~~~~~~~~~ 83 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFV-----DKDDFER---KLKEGQFLEFDK 83 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEEC-----CHHHHHH---HHHTTCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeC-----CHHHHHH---HHHcCCCEEeHH
Confidence 468999999999999999999999863123333222222221 1 12232 2333332 234566666665
Q ss_pred eeccCCcccCccee--ecCCCceEEEEehhhhhhcccCCc---c-EEEEEe-CChhhHHHHHHhhhhhhcCC-CHHHHHH
Q 006667 116 YDFKSSSRIGYRTL--EVPSSRIVIIEGIYALSEKLRPLI---D-LRVSVT-GGVHFDLVKRVFRDIQRVGQ-EPEEIIH 187 (636)
Q Consensus 116 YDf~t~~R~~~eti--~v~~~dVIIVEGiyaL~~eLRdl~---D-LKIFVD-ad~D~RL~RRI~RDi~eRGr-slEeVl~ 187 (636)
|......... ..+ .+.....+|+++.+.....++..+ + +.|||+ ++.++ +.+|+. .||. +.+++..
T Consensus 84 ~~~~~~~~~~-~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~-l~~Rl~----~R~~~~~~~i~~ 157 (204)
T 2qor_A 84 YANNFYGTLK-SEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDI-LLGRLK----NRNTEKPEEINK 157 (204)
T ss_dssp ETTEEEEEEH-HHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHH-HHHHHH----TCTTSCHHHHHH
T ss_pred hCCCeecCCH-HHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHH-HHHHHH----HcCCCCHHHHHH
Confidence 4422111100 011 124556788865443333334333 3 889999 66665 555553 3564 4444444
Q ss_pred HHHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 188 QISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 188 qyl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
++.....+.... ....||++|.|+
T Consensus 158 rl~~~~~~~~~~----~~~~~d~vi~n~ 181 (204)
T 2qor_A 158 RMQELTREMDEA----DKVGFNYFIVND 181 (204)
T ss_dssp HHHHHHHHHHHH----HHHTCSEEEECS
T ss_pred HHHHHHHHHHHh----hhccCcEEEECc
Confidence 443322232111 346789999865
No 40
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.87 E-value=4.5e-11 Score=117.25 Aligned_cols=167 Identities=13% Similarity=0.165 Sum_probs=93.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc--C--CcccccCCCCCcccc----cHHHHHHHHHhh------
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN--D--SSRIIDGNFDDPRLT----DYDTLLENIRGL------ 105 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~--~--~~r~~dgnfD~P~af----D~dlL~~~L~~L------ 105 (636)
+..+|+|.|++||||||+++.|+...+.+.+...+... . ........|+++..+ ....+...+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~ 98 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNK 98 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHHHhcccc
Confidence 46799999999999999999999873235444443211 0 000000011122211 111122222222
Q ss_pred ---hCCCceeeeeeeccCCcccCcceeecCCCceEEEEehhhhh-hcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCC
Q 006667 106 ---KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 181 (636)
Q Consensus 106 ---k~Gk~I~iPvYDf~t~~R~~~eti~v~~~dVIIVEGiyaL~-~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrs 181 (636)
..|+.+..+.|.|.+....+ . .+.+..+.++++++.+. +.....+|+.||||+|.++++.|...| |++
T Consensus 99 ~~l~~~r~v~~dry~~s~~ayq~-~--~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R-----~r~ 170 (230)
T 2vp4_A 99 KLKIMERSIFSARYCFVENMRRN-G--SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQR-----ARS 170 (230)
T ss_dssp SEEEEESCHHHHHHTHHHHHHHH-T--SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHH-----CCG
T ss_pred CceeecCCccccHHHHHHHHHHc-C--CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHc-----CCc
Confidence 22455555666666543322 1 23455677888887765 346678999999999999987765444 443
Q ss_pred HHHH-HHHHHhcCCcchhhhccCC--cCCcc-EEEeC
Q 006667 182 PEEI-IHQISETVYPMYKAFIEPD--LQTAH-IKIIN 214 (636)
Q Consensus 182 lEeV-l~qyl~~VrP~~ekfIePt--k~~AD-IIIpN 214 (636)
.+.. -..|.+.++..|.++++.. ...++ ++|.+
T Consensus 171 ~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~ 207 (230)
T 2vp4_A 171 EESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA 207 (230)
T ss_dssp GGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC
Confidence 2221 1146667777787776432 34455 55654
No 41
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.84 E-value=9.2e-10 Score=103.29 Aligned_cols=165 Identities=14% Similarity=0.180 Sum_probs=78.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHH----HHHHHHHhhhCCCceeeeeeec
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYD----TLLENIRGLKEGKAVQVPIYDF 118 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~d----lL~~~L~~Lk~Gk~I~iPvYDf 118 (636)
+|+|.|++||||||+++.|++.++ ..++... .......+..+.++..+++. .+...+..+...-.-...++|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~-~~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~ 78 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG-YEIFKEP--VEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDR 78 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC-CEEECCC--GGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEES
T ss_pred EEEEECCCccCHHHHHHHHHHhcC-CcEEccc--ccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEe
Confidence 689999999999999999999985 4333210 00000000011122222211 1222222222110011134454
Q ss_pred cCCcccCcce-----eecCCCceEEEEehhhhh-hcc------cCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHH
Q 006667 119 KSSSRIGYRT-----LEVPSSRIVIIEGIYALS-EKL------RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 186 (636)
Q Consensus 119 ~t~~R~~~et-----i~v~~~dVIIVEGiyaL~-~eL------Rdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl 186 (636)
.......... -.+.+....++++++... ..+ ...+|+.|||++|.++++.| +. .||+..+...
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~R-l~----~R~r~~~~~~ 153 (205)
T 2jaq_A 79 TLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISR-IK----KRGRSEELLI 153 (205)
T ss_dssp CTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHH-HH----HHTCHHHHHS
T ss_pred ccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHH-HH----HcCChhhhcC
Confidence 3321100000 001111223334444422 333 25689999999999997654 32 2466554321
Q ss_pred -HHHHhcCCcchhhhccCCc-CCccEEEeCC
Q 006667 187 -HQISETVYPMYKAFIEPDL-QTAHIKIINK 215 (636)
Q Consensus 187 -~qyl~~VrP~~ekfIePtk-~~ADIIIpN~ 215 (636)
..+...+...|..+.++.. ..||++|.++
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~ 184 (205)
T 2jaq_A 154 GEEYWETLNKNYEEFYKQNVYDFPFFVVDAE 184 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHccccCcEEEEECC
Confidence 1344455555665555544 6789999754
No 42
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.81 E-value=1.7e-09 Score=101.39 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=64.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 121 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~ 121 (636)
.+|+|+|++||||||+|+.|++.+ ++.++++|+++...... + .+ ....+.+.+ ..|+.+.... .+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~~~~~~~~-~---~~---~~~~i~~~~---~~g~~~~~~~----~~ 77 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLREELAS-E---SE---RSKLIRDIM---ERGDLVPSGI----VL 77 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-TCEEEEHHHHHHHHHHH-T---CH---HHHHHHHHH---HTTCCCCHHH----HH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHHHHHHHHh-C---CH---HHHHHHHHH---HcCCcCCHHH----HH
Confidence 589999999999999999999998 48899999874321000 0 00 000111111 1222110000 00
Q ss_pred cccCccee--ecCCCceEEEEehhhhh---hccc---CCccEEEEEeCChhhHHHHHHhhh
Q 006667 122 SRIGYRTL--EVPSSRIVIIEGIYALS---EKLR---PLIDLRVSVTGGVHFDLVKRVFRD 174 (636)
Q Consensus 122 ~R~~~eti--~v~~~dVIIVEGiyaL~---~eLR---dl~DLKIFVDad~D~RL~RRI~RD 174 (636)
.... ..+ .......||++|..... ..+. ..+|+.|||++|.++++.|...|+
T Consensus 78 ~~~~-~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 137 (199)
T 2bwj_A 78 ELLK-EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMS 137 (199)
T ss_dssp HHHH-HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTC
T ss_pred HHHH-HHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCC
Confidence 0000 000 01234678899875432 1222 257999999999999766655554
No 43
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.81 E-value=1.4e-08 Score=92.72 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=76.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeeccCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 121 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~t~ 121 (636)
.+|+|+|++||||||+|+.|++.+ +..+++.|.|..... ....+.+....+..|..+-.-.|-..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~~~~~~------------~~~~~~~~~~~l~~~~~vi~dr~~~~-- 66 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL-KYPIIKGSSFELAKS------------GNEKLFEHFNKLADEDNVIIDRFVYS-- 66 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH-CCCEEECCCHHHHTT------------CHHHHHHHHHHHTTCCSEEEESCHHH--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeeecCcccccchh------------HHHHHHHHHHHHHhCCCeEEeeeecc--
Confidence 479999999999999999999998 478899998753211 12334445556666655422111110
Q ss_pred cccCcceeecCCCceEEEEehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCCcchhhhc
Q 006667 122 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 201 (636)
Q Consensus 122 ~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~VrP~~ekfI 201 (636)
...+... ......+ ...............|+.||+++|.++.+.|...| .+.....+.+.. ++..|+...
T Consensus 67 -~~v~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r---~r~~~~~~~~~~----~~~~~~~~~ 136 (173)
T 3kb2_A 67 -NLVYAKK-FKDYSIL-TERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVR---GDEYIEGKDIDS----ILELYREVM 136 (173)
T ss_dssp -HHHHTTT-BTTCCCC-CHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHH---SCSCCCHHHHHH----HHHHHHHHH
T ss_pred -hHHHHHH-HHHhhHh-hHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc---CCcchhhhHHHH----HHHHHHHHH
Confidence 0000000 0000000 00111111111234689999999999876554444 122222222222 233344433
Q ss_pred cCCcCCccEEEeCC
Q 006667 202 EPDLQTAHIKIINK 215 (636)
Q Consensus 202 ePtk~~ADIIIpN~ 215 (636)
.. ...++++|.++
T Consensus 137 ~~-~~~~~~~id~~ 149 (173)
T 3kb2_A 137 SN-AGLHTYSWDTG 149 (173)
T ss_dssp HT-CSSCEEEEETT
T ss_pred hh-cCCCEEEEECC
Confidence 22 23689998754
No 44
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=98.80 E-value=5.1e-08 Score=95.54 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=95.7
Q ss_pred ccceeeeEecCCCCCcccccceEEeeecCCeEEEEEeeeecCCCcccccceeEEEeee-----------------chhhh
Q 006667 252 TEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVR-----------------LLGGL 314 (636)
Q Consensus 252 ~e~~~DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v~-----------------~~~gL 314 (636)
...+.++||-.|..+++..+.+||+|..|+.+.+|+|+|..++ +.|+++.+. +.+.|
T Consensus 33 ~~~~~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~TlK~~~~~g------~~E~~~~l~~~ea~~~l~~~~~p~~~i~~~l 106 (195)
T 3tj7_A 33 FTKQVNHYFETPNSSLKEAGSALRIRHKGETYTLTLKQPAEVG------LLETHQVVTENEAKMMMETNVIISGAVMNQL 106 (195)
T ss_dssp CEEEEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSSS------EEEEEEEECHHHHHHHHHSSCCCSSHHHHHH
T ss_pred eEEEEEEEEeCCcHhHHhCCCEEEEEeECCeEEEEEeeCCCCC------ceEEEeeCCHHHHHHHhhcCCCChHHHHHHH
Confidence 3445699999999999999999999999999999999997663 457766663 33358
Q ss_pred hhcCCeE-----EEEEEeeeeeeeeCCEEEEeecccccCcc-e-EEEe----cccHHHHHHHHHHcCCCCCc
Q 006667 315 MALGYTI-----ATILKRSSHIFYDDRVCVKTDWLEQLNRK-Y-VQVQ----GRDRLYVKYVGEQLGLDGSY 375 (636)
Q Consensus 315 ~~LGy~~-----aa~V~R~re~y~~~~~~i~lD~ve~Lg~~-F-veIe----g~~r~~v~~~~~~Lgl~G~~ 375 (636)
..+||.. ++.+.+.|..|...+-.++||+++++|.. | +|+| +..++.+.++.+++||...+
T Consensus 107 ~~~g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~ 178 (195)
T 3tj7_A 107 CKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRH 178 (195)
T ss_dssp HHHTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHcCCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCC
Confidence 8999765 58898888888877789999999999953 4 4444 34788999999999999765
No 45
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=98.77 E-value=1.2e-07 Score=91.97 Aligned_cols=123 Identities=10% Similarity=0.089 Sum_probs=98.5
Q ss_pred eeeeEecCCCCCcccccceEEeeecCCeEEEEEeeeecCCCcccccceeEEEeeec-----------------hhhhhhc
Q 006667 255 TYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRL-----------------LGGLMAL 317 (636)
Q Consensus 255 ~~DIYLlpPt~df~~tdeaLRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v~~-----------------~~gL~~L 317 (636)
+.|+||-.|..+++..+.+||+|..|+.+.+|+|+|... .|.|+|+.+.. .+.|.++
T Consensus 36 ~~n~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~------gR~E~e~~l~~~~~~~~l~~~~~p~~~~~~~l~~~ 109 (193)
T 2gfg_A 36 QRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPA------GLLETNQTLSKQEAKLALESAHFPSGEVMDALRDL 109 (193)
T ss_dssp EEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSS------SEEEEEEEECHHHHHHHHHHCCCCCSHHHHHHHHT
T ss_pred eEEEeeeCCCHHHHhCCCEEEEEeeCCcEEEEEccCCCC------CCceEeccCCchhhhhhcccccCCcHHHHHHHHHh
Confidence 569999999999999999999999999999999999763 28899988852 2236677
Q ss_pred CCe-----EEEEEEeeeeeeeeCCEEEEeecccccCcceEEEe-----c-ccHHHHHHHHHHcCCCCCcccchhHHHH
Q 006667 318 GYT-----IATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQ-----G-RDRLYVKYVGEQLGLDGSYVPRTYIEQI 384 (636)
Q Consensus 318 Gy~-----~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIe-----g-~~r~~v~~~~~~Lgl~G~~i~kSYLEli 384 (636)
|+. +.+.+.+.|..|..++-.|++|.++.+|.++.||| | ...+.+.+++.++|+...+- .|=++-.
T Consensus 110 ~~~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~~~~-~SK~~R~ 186 (193)
T 2gfg_A 110 SIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPT-ENKIQRF 186 (193)
T ss_dssp TCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCCCCC-CCHHHHH
T ss_pred cCCccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCcCCC-cCHHHHH
Confidence 765 47889999988888877999999999997678888 2 23457888999999975443 5655544
No 46
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.76 E-value=1.3e-08 Score=96.29 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=63.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc--ccCCCCCcccccHHHHHHHHHhhhCCCceeeeeeecc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI--IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 119 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~--~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvYDf~ 119 (636)
++++|.||+||||||+++.|...++....++...-.+.++. .++ .+....+.+.+...+ ..+..+++..|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g--~~~~~~~~~~~~~~~---~~~~~~e~~~~~~~ 76 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNG--KDYNFVSVDEFKSMI---KNNEFIEWAQFSGN 76 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBT--TTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCC--eeeeecCHHHHHHHH---hhcceeeEEEEece
Confidence 57899999999999999999998862111111111111111 111 111122333333322 23444444332211
Q ss_pred CC-cccCcceeecCCCceEEE----EehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhcCC
Q 006667 120 SS-SRIGYRTLEVPSSRIVII----EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 194 (636)
Q Consensus 120 t~-~R~~~eti~v~~~dVIIV----EGiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~Vr 194 (636)
.. .....-...+....++|+ +|...+.. ....--..|||.+|....|.+|+. .||.+.++.+.+.+...+
T Consensus 77 ~yg~~~~~i~~~l~~g~~~il~~~~~g~~~l~~-~~~~~~~~i~i~~p~~~~l~~Rl~----~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 77 YYGSTVASVKQVSKSGKTCILDIDMQGVKSVKA-IPELNARFLFIAPPSVEDLKKRLE----GRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHT-CGGGCCEEEEEECSCC------------------------------
T ss_pred eccCcHHHHHHHHHcCCeEEEEEcHHHHHHHHH-hcCCCeEEEEEECcCHHHHHHHHH----hcCCCCHHHHHHHHHHHH
Confidence 11 000000001234567777 55544432 011223569999988666666654 577777777776666655
Q ss_pred cchhhhccCCcCCccEEEeCC
Q 006667 195 PMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 195 P~~ekfIePtk~~ADIIIpN~ 215 (636)
...+ +.. +..+|++|.|+
T Consensus 152 ~~~~-~~~--~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELA-YAE--TGAHDKVIVND 169 (186)
T ss_dssp ----------CCCCSEEEECS
T ss_pred HHHH-hhc--ccCCcEEEECc
Confidence 4322 222 46789999876
No 47
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=98.72 E-value=5.3e-08 Score=95.22 Aligned_cols=123 Identities=14% Similarity=0.049 Sum_probs=98.3
Q ss_pred ccceeeeEecCCCCCcccccceEEeeecCC-----------eEEEEEeeeecCCCcccccceeEEEeeech---------
Q 006667 252 TEETYDIYLLPPGEDPDACQSYLRMRNRDG-----------KYNLMFEEWVTDSPFIISPRITFEVSVRLL--------- 311 (636)
Q Consensus 252 ~e~~~DIYLlpPt~df~~tdeaLRiR~~dg-----------~~~Ltykgp~~d~~fiikPR~efev~v~~~--------- 311 (636)
...+.|+||-.|..++...+.|||+|..++ ++.+|||+|....... +-++|.+..+...
T Consensus 29 ~~~~~~~y~dt~~~~l~~~~~~lr~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~ 107 (210)
T 3v85_A 29 TLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGI-SRVEEDEEEIEYWIGKECVESP 107 (210)
T ss_dssp EEEEEEEEEECTTCHHHHTTEEEEEEEEEC------CCCCCEEEEEEEEEEEEETTE-EEEEEEEEEECHHHHHHHHHCG
T ss_pred eEEEEEEEEeCCCHHHHhCCcEEEEEEeCCccceeccCCCcceEEEEecCCcCCCCc-eeEEEEeecCChhHHHHhhhhh
Confidence 445679999999999999999999998654 5779999998887764 5666776654211
Q ss_pred ------------------hhhhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEe------cccHHHHHHHHH
Q 006667 312 ------------------GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQ------GRDRLYVKYVGE 367 (636)
Q Consensus 312 ------------------~gL~~LGy~~aa~V~R~re~y~~~~~~i~lD~ve~Lg~~FveIe------g~~r~~v~~~~~ 367 (636)
+.+..+|+++.+.+.+.|..|..++..|+||..+..+-+|+||| ....+.+.++++
T Consensus 108 ~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~~~ELEle~~d~e~~~~~~~~lL~ 187 (210)
T 3v85_A 108 AKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLT 187 (210)
T ss_dssp GGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 12346899999999999999999999999999996633699999 225778899999
Q ss_pred HcCCCCCc
Q 006667 368 QLGLDGSY 375 (636)
Q Consensus 368 ~Lgl~G~~ 375 (636)
++||.-.+
T Consensus 188 ~~gI~~~~ 195 (210)
T 3v85_A 188 EEKIEFSN 195 (210)
T ss_dssp HTTCCEEE
T ss_pred HcCCCcCc
Confidence 99997443
No 48
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.67 E-value=4.2e-08 Score=92.50 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC-CCcEEEEcccccCCcc--c---ccCCCCCcccccHHHHHHHHHhhhCCCceeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSR--I---IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 114 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L-~~v~VIsmDdY~~~~r--~---~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iP 114 (636)
..+|+|.|++||||||+++.|+..+ +... +........+. . ..+.|.+ .+.+.. ...+|..+.++
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~ 76 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSISMTTRQMREGEVDGVDYFFKT-----RDAFEA---LIKDDQFIEYA 76 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCCCEECSCCCTTCCBTTTBEECC-----HHHHHH---HHHTTCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeE-EecccccCCCCCCccCCCceEEcC-----HHHHHH---HHHcCCeEEEE
Confidence 4589999999999999999999987 4221 11111111110 0 1112222 222222 13456667776
Q ss_pred eeeccCCcccCccee--ecCCCceEEEEehhhhhhcccCCc-c-EEEEEeC-ChhhHHHHHHhhhhhhcC-CCHHHHHHH
Q 006667 115 IYDFKSSSRIGYRTL--EVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTG-GVHFDLVKRVFRDIQRVG-QEPEEIIHQ 188 (636)
Q Consensus 115 vYDf~t~~R~~~eti--~v~~~dVIIVEGiyaL~~eLRdl~-D-LKIFVDa-d~D~RL~RRI~RDi~eRG-rslEeVl~q 188 (636)
.+......... +.+ ......++|+++.+.....++..+ | ..||+.. +.++. .+|+. .|| .+.+++..+
T Consensus 77 ~~~~~~~g~~~-~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~Rl~----~R~~~~~~~~~~r 150 (207)
T 2j41_A 77 EYVGNYYGTPV-QYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHL-RERLV----GRGTESDEKIQSR 150 (207)
T ss_dssp EETTEEEEEEH-HHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------
T ss_pred eECCeecCCCH-HHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHH-HHHHH----hcCCCCHHHHHHH
Confidence 65432110000 001 123457899999877665555555 7 4555553 34453 34442 233 334444333
Q ss_pred HHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 189 ISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 189 yl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
+ ....+... ....||++|.|+
T Consensus 151 l-~~~~~~~~-----~~~~~d~vI~n~ 171 (207)
T 2j41_A 151 I-NEARKEVE-----MMNLYDYVVVND 171 (207)
T ss_dssp ------CGGG-----GGGGCSEEEECS
T ss_pred H-HHHHHHHh-----ccccCCEEEECC
Confidence 3 33333322 235789999764
No 49
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.67 E-value=2.2e-09 Score=98.53 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.|+|+|++||||||+|+.|++.++ +.++++|.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~~ 35 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-IPFYDVDEEV 35 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-CCEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CCEEECcHHH
Confidence 589999999999999999999884 8899999874
No 50
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.66 E-value=3.1e-08 Score=96.06 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=87.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc-----ccCCCCCcccccHHHHHHHHHhhhCCCceeeeee
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 116 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~-----~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvY 116 (636)
+.|.|+||||||||||+++|.+.+|....++.-.-.++++. .+|.|-. -+.+. ..+.+|+.+++-.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs-----~~eF~---~~i~~g~flE~~~~ 73 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVS-----VDEFK---SMIKNNEFIEWAQF 73 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECC-----HHHHH---HHHHTTCEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeec-----HHHHH---HHHHcCCEEEEEEE
Confidence 45789999999999999999999874222222221344432 2233432 22222 34567888887654
Q ss_pred eccC-CcccCcceeecCCCceEEEEehhhhhhcccCCc---cEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhc
Q 006667 117 DFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 192 (636)
Q Consensus 117 Df~t-~~R~~~eti~v~~~dVIIVEGiyaL~~eLRdl~---DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~ 192 (636)
.-.. ++....-.........+|+++-.-....++..+ -..|||..|....|.+|+. .||.+.++.+.+-+..
T Consensus 74 ~g~~YGt~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~----~Rg~e~~e~i~~Rl~~ 149 (186)
T 1ex7_A 74 SGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLE----GRGTETEESINKRLSA 149 (186)
T ss_dssp TTEEEEEEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHH----HHCCSCHHHHHHHHHH
T ss_pred cCceeeeecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHH----hcCCCCHHHHHHHHHH
Confidence 3211 111000000123346777776555444455443 3679999988777877774 4686655555544443
Q ss_pred CCcchhhhccCCcCCccEEEeCC
Q 006667 193 VYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 193 VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
...+.. +-. ...-|.+|.|+
T Consensus 150 a~~e~~-~~~--~~~fD~vIvNd 169 (186)
T 1ex7_A 150 AQAELA-YAE--TGAHDKVIVND 169 (186)
T ss_dssp HHHHHH-HHT--TTCSSEEEECS
T ss_pred HHHHHh-hcc--ccCCcEEEECc
Confidence 332221 111 13458888764
No 51
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.65 E-value=3.5e-08 Score=93.76 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=31.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
..+|+|.|++||||||+|+.|++.+ +..+|++|++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~~d~~~ 55 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELF 55 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-TCCEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCcEEehhHHH
Confidence 4489999999999999999999988 47899999864
No 52
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.65 E-value=7.8e-09 Score=98.99 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
.|+|+|++||||||+|+.|++.+ ++.++++|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~r 36 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHHHHHH
Confidence 47899999999999999999988 588999998643
No 53
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=3.6e-08 Score=94.09 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.++|+|.|++||||||+++.|++.+ +..+++.|++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d~~~ 60 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL-NVPFIDLDWYI 60 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc-CCCEEcchHHH
Confidence 4689999999999999999999998 47899999874
No 54
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.65 E-value=9.4e-09 Score=95.90 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=32.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.++|.|.|++||||||+|+.|++.+ +..+++.|.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d~~~ 40 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT-KRILYDSDKEI 40 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHHH
Confidence 4578999999999999999999998 58899999874
No 55
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.64 E-value=1.9e-08 Score=96.54 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=31.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
.|+|+|++||||||+|+.|++.+ ++.+|++|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHH
Confidence 47899999999999999999999 588999988643
No 56
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.64 E-value=5e-08 Score=91.94 Aligned_cols=153 Identities=10% Similarity=0.114 Sum_probs=78.2
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc-----ccCCCCCcccccHHHHHHHHHhhhCCCcee
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ 112 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~-----~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~ 112 (636)
|.+.++++|.||||||||||++.|...++.....+...-.+.++. .++.|. +.+.+.+. +.++..++
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~-----~~~~~~~~---~~~~~~l~ 73 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFV-----SHDQMMQD---ISNNEYLE 73 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEEC-----CHHHHHHH---HHTTCEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEe-----CHHHHHHH---HHcCCceE
Confidence 456779999999999999999999998752111111100111111 112222 33333332 33455555
Q ss_pred eeeeeccCCcccCccee--ecCCCceEEEEehhhhhhcccCC--ccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHH
Q 006667 113 VPIYDFKSSSRIGYRTL--EVPSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 188 (636)
Q Consensus 113 iPvYDf~t~~R~~~eti--~v~~~dVIIVEGiyaL~~eLRdl--~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~q 188 (636)
+..+........ ...+ ......++|++.-......+++. -...|||++|...+|.+| ++.+.+
T Consensus 74 ~~~~~~n~yg~~-~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R------------~~~i~r 140 (180)
T 1kgd_A 74 YGSHEDAMYGTK-LETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNE------------DESLQR 140 (180)
T ss_dssp EEEETTEEEEEE-HHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCC------------SHHHHH
T ss_pred EEEEcCcccccc-HHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhh------------HHHHHH
Confidence 544322211100 0001 12345677775332222233322 257899999876665543 344466
Q ss_pred HHhcCCcchhhhccCCcCCccEEEeCC
Q 006667 189 ISETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 189 yl~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
+.....++...| ...+|++|.|+
T Consensus 141 ~~~~~~~~~~~~----~~~~d~~i~n~ 163 (180)
T 1kgd_A 141 LQKESDILQRTY----AHYFDLTIINN 163 (180)
T ss_dssp HHHHHHHHHHHH----GGGCSEEEECS
T ss_pred HHHHHHHHHHhh----hCCCcEEEECc
Confidence 665544443332 36799999875
No 57
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.63 E-value=2.5e-08 Score=92.59 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC----cEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS----IAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~----v~VIsmDdY~ 77 (636)
..+|+|+|++||||||+|+.|++.++. ..++++|++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~ 43 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVM 43 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHH
Confidence 358999999999999999999998842 7889988763
No 58
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.63 E-value=7e-08 Score=91.03 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=24.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|+|.||+||||||+++.|...++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999886
No 59
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.62 E-value=1.6e-07 Score=86.88 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+..+|+|.|++||||||+++.|+..+ +..+++.|++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~~d~~~~ 44 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGDFLHP 44 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-TCEEEEGGGGCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-CcEEEeCccccc
Confidence 45689999999999999999999988 588999998753
No 60
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.60 E-value=1.3e-07 Score=89.24 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=34.4
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHh-CCCcEEEEcccccC
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNF-MPSIAVITMDNYND 78 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~-L~~v~VIsmDdY~~ 78 (636)
+.+..+|+|+|++||||||+|+.|++. + ++.++++|++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~-g~~~id~d~~~~ 47 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELD-GFQHLEVGKLVK 47 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHST-TEEEEEHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCEEeeHHHHHH
Confidence 334678999999999999999999999 6 589999998743
No 61
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.58 E-value=1.5e-07 Score=89.89 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+..+|+|.|++||||||+++.|+..+ +..+++.|++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-g~~~i~~d~~~~ 65 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET-GLEFAEADAFHS 65 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-CCEEEEGGGGSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh-CCeEEccccccc
Confidence 45799999999999999999999988 578899998753
No 62
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.58 E-value=1.4e-08 Score=94.79 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=31.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
.+|+|+|++||||||+|+.|++.+ ++.+++.|.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D~~~~ 38 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVAIE 38 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-CCCEEeCchHHH
Confidence 368999999999999999999998 488999998743
No 63
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.58 E-value=7e-08 Score=90.20 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=32.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
..+|+|+|++||||||+|+.|++.+ +..++++|++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~~~ 45 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR 45 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHHHH
Confidence 4589999999999999999999998 488999998643
No 64
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.55 E-value=3.7e-08 Score=90.52 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=31.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
++|+|+|++||||||+|+.|++.+ ++.+++.|.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL-GYEFVDTDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH-TCEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCcEEcccHHH
Confidence 479999999999999999999998 48899999874
No 65
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.55 E-value=4.1e-08 Score=90.54 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=31.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.+|+|+|++||||||+|+.|++.+ ++.++++|.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l-g~~~id~D~~~ 42 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL-KLEVLDTDMII 42 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH-TCCEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHHH
Confidence 478999999999999999999998 48899999864
No 66
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.49 E-value=2.2e-07 Score=86.06 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=30.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCC----cEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPS----IAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~----v~VIsmDdY~ 77 (636)
++|.|.|++||||||+|+.|++.++. +.+++.|++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 57999999999999999999998852 6777777654
No 67
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.47 E-value=1.4e-07 Score=87.92 Aligned_cols=36 Identities=17% Similarity=0.390 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
..+|.|+|++||||||+|+.|++.+ +..+++.|.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~D~~~ 40 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL-RLPLLSKDAFK 40 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-TCCEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc-CCeEecHHHHH
Confidence 4689999999999999999999988 47789999874
No 68
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.44 E-value=2.7e-07 Score=85.76 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDN 75 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDd 75 (636)
+|+|+|++||||||+|+.|++.++ ++.++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 689999999999999999999873 577888875
No 69
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.42 E-value=9e-08 Score=94.95 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
+..+|+|+|++||||||+|+.|++.+ ++.+|+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~~~~ 64 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTGDLL 64 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEecHHHH
Confidence 34589999999999999999999988 58999999864
No 70
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.41 E-value=4.1e-07 Score=84.71 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=32.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.++|+|+|++||||||+|+.|++.+ ++.++++|++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~d~~~ 46 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS-GLKYINVGDLA 46 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEHHHHH
Confidence 4578999999999999999999998 58899999864
No 71
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.41 E-value=1.8e-07 Score=85.96 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH-hCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLN-FMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae-~L~~v~VIsmDdY~ 77 (636)
.+|.|+|++||||||+|+.|++ .+ +..+|++|.+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~-~~~~i~~d~~r 38 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYR 38 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcC-CcEEecHHHHH
Confidence 5899999999999999999999 56 58899999874
No 72
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.39 E-value=2.2e-07 Score=86.51 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
..+|+|.|++||||||+|+.|++.+ +..++++|++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l-~~~~i~~d~~~ 39 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL-GFKKLSTGDIL 39 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH-TCEEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCeEecHHHHH
Confidence 3579999999999999999999988 48899998754
No 73
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.36 E-value=2.1e-06 Score=83.31 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=28.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
..+|+|+|++||||||+++.|++.+ +..+++-|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l-g~~~~D~~ 38 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY-NIPLYSKE 38 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT-TCCEECHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh-CcCEECHH
Confidence 4589999999999999999999999 47788733
No 74
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.35 E-value=7.3e-07 Score=89.63 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=32.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.+|.|.|++||||||+|+.|++.+.+..+|++|.|+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r 38 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYR 38 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHH
Confidence 589999999999999999999986568899999774
No 75
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=3.1e-07 Score=88.57 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc--ccC-CCCCcccccHHHHHHHHHhhhCCCceeeeee
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI--IDG-NFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 116 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~--~dg-nfD~P~afD~dlL~~~L~~Lk~Gk~I~iPvY 116 (636)
+..+|+|.||+||||||+++.|...++.....+.....+.++. .++ +|. ..+.+.+.+.+ ..+..+++..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~---~~~~~~f~~~~---~~~~~le~~~~ 80 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYY---FRSREVFEQAI---KDGKMLEYAEY 80 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBE---ECCHHHHHHHH---HTTCEEEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeE---EecHHHHHHHH---hcCcEEEEEEE
Confidence 4579999999999999999999998863122222222222221 111 111 12334443333 34555554432
Q ss_pred eccCC-cccCcceeecCCCceEEEEehhhhhhccc-CCcc-EEEEEeCChhhHHHHHHhhhhhhcC-CCHHHHHHHHHhc
Q 006667 117 DFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLR-PLID-LRVSVTGGVHFDLVKRVFRDIQRVG-QEPEEIIHQISET 192 (636)
Q Consensus 117 Df~t~-~R~~~eti~v~~~dVIIVEGiyaL~~eLR-dl~D-LKIFVDad~D~RL~RRI~RDi~eRG-rslEeVl~qyl~~ 192 (636)
.-... .....-...+.....+|+++-.-....++ ...+ ..||+..|....+.+|+. .|| .+.+++..+.. .
T Consensus 81 ~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~----~R~~~~~e~i~~Rl~-~ 155 (208)
T 3tau_A 81 VGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRII----GRGTESMEVVEERME-T 155 (208)
T ss_dssp TTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-----------CCHHHHHHHH-H
T ss_pred ccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHH----hcCCCCHHHHHHHHH-H
Confidence 21111 00000000123345666654332222222 1223 678988774443444432 345 34455544443 3
Q ss_pred CCcchhhhccCCcCCccEEEeCC
Q 006667 193 VYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 193 VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
..... +....+|++|.|+
T Consensus 156 ~~~e~-----~~~~~~d~vivN~ 173 (208)
T 3tau_A 156 AKKEI-----EMMASYDYAVVND 173 (208)
T ss_dssp HHHHH-----HHGGGSSEEEECS
T ss_pred HHHHH-----HhhccCCEEEECc
Confidence 22221 2235789999865
No 76
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.34 E-value=1.1e-07 Score=87.57 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
.+|+|+|++||||||+++.|+..++ ..+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~-~~~id~d~~~ 39 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQEI 39 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT-CEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCEEeccHHH
Confidence 4799999999999999999999984 7888888763
No 77
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.34 E-value=1.7e-07 Score=87.11 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=31.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+|+|.|++||||||+|+.|++.+ ++.+++.|.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d~d~~~~ 40 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-DLVFLDSDFLIE 40 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcccHHHH
Confidence 68999999999999999999999 488999998753
No 78
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.31 E-value=2.2e-06 Score=80.62 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=24.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|+|.|++||||||+|+.|++.++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999885
No 79
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.28 E-value=5.5e-07 Score=87.37 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=32.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
.+|+|.|++||||||+|+.|++.+ +..++++|++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~~~ 43 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF-ELKHLSSGDLLR 43 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS-SSEEEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCeEEechHHHH
Confidence 589999999999999999999999 588999998643
No 80
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.28 E-value=2.6e-06 Score=85.11 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
++|+|+|++||||||+|+.|++.++ ..++++|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~-~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG-WPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-CCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC-CeEEeccHHh
Confidence 5899999999999999999999984 7899999963
No 81
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.26 E-value=3.1e-06 Score=84.54 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=29.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEE--Eccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVI--TMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VI--smDdY~ 77 (636)
..+|.|+|++||||||+|+.|++.+. +..++ +.|.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 35899999999999999999999731 34444 777764
No 82
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.26 E-value=4e-07 Score=90.40 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
...+|+|+|++||||||+|+.|++.+ ++.+++.|.++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l-g~~~~d~~~~~ 49 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL-GIHFYDDDILK 49 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH-TCEEECHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc-CCcEEcHHHHH
Confidence 35699999999999999999999999 58888877654
No 83
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.24 E-value=3.6e-06 Score=77.83 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEE
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVI 71 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VI 71 (636)
+..+|.|+|++||||||+|+.|++.++ ..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP-GSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST-TCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC-CCEE
Confidence 346899999999999999999999985 4455
No 84
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.21 E-value=1.2e-06 Score=83.07 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|+|+|++||||||+|+.|++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999864
No 85
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.21 E-value=3.8e-06 Score=77.51 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=30.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY~ 77 (636)
..+|.|+|++||||||+|+.|++.++ ....++.|.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 35899999999999999999999986 34456788774
No 86
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.21 E-value=2.7e-06 Score=81.95 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=32.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
.+|+|.|++||||||+|+.|++.+ +..+|++|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~~~ 40 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF-HAAHLATGDMLR 40 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CceEEehhHHHH
Confidence 479999999999999999999999 488999998753
No 87
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.20 E-value=1.5e-07 Score=92.35 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=26.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEE
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVI 71 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VI 71 (636)
..+|+|.|+.||||||+++.|++.++++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~~ 32 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA 32 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCCeee
Confidence 3589999999999999999999999655433
No 88
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.20 E-value=1.5e-06 Score=84.45 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=16.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHH-HhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVL-NFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLa-e~L~ 66 (636)
..+|+|.||+||||||+++.|. ..++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4699999999999999999999 8875
No 89
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.18 E-value=2.1e-06 Score=79.98 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=28.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDd 75 (636)
+..+|+|+|++||||||+++.|++.++ +..++.+|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 356899999999999999999999862 455665553
No 90
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.15 E-value=8.2e-07 Score=89.62 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
..+|+|.|++||||||+++.|++.+ +..+++.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l-g~~~~d~d~~~ 83 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL-GYTFFDCDTLI 83 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH-TCEEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-CCcEEeCcHHH
Confidence 4689999999999999999999988 47889999864
No 91
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.13 E-value=3.7e-06 Score=81.89 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=31.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+|+|.|++||||||+|+.|++.+ +..++++|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l-g~~~i~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY-SLAHIESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEchHHHHH
Confidence 68999999999999999999998 488999998743
No 92
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.12 E-value=4.4e-06 Score=80.78 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=31.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
..|+|.|++||||||+|+.|++.+ +..+|++|++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~li~ 41 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTGDMLR 41 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CceEEehhHHHH
Confidence 368899999999999999999999 589999998743
No 93
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.11 E-value=5.2e-06 Score=77.47 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=27.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEccc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDN 75 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDd 75 (636)
+|+|+|++||||||+|+.|++.++ ++.++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 689999999999999999999873 366676654
No 94
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.11 E-value=6.5e-07 Score=86.43 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=31.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
.+|.|.|++||||||+|+.|++.++ ...+++|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~~~ 41 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ-LAHISAGDLLR 41 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC-CEECCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHHHH
Confidence 4789999999999999999999995 78889888643
No 95
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.10 E-value=3.1e-06 Score=80.10 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|+|+|++||||||+|+.|++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999864
No 96
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.10 E-value=9.1e-06 Score=78.09 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=31.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
.|+|.|++||||||+|+.|++.+ +..+|++|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~d~~~r 36 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDMLR 36 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHH
Confidence 47899999999999999999988 588999988643
No 97
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.07 E-value=8.3e-06 Score=79.65 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=32.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
...|.|.|++||||||+|+.|++.+ ++.+|++|++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~li 51 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF-CVCHLATGDML 51 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHHHH
Confidence 4579999999999999999999999 48899998864
No 98
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.07 E-value=1e-05 Score=78.82 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=83.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc-----cccCCCCCcccccHHHHHHHHHhhhCCCceeeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 115 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r-----~~dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPv 115 (636)
..+++|.||+|||||||++.|...+|+-..+..+.....++ ...+.|.+|.. +... ...++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~---~~~~~~l~~~~ 94 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTI-----FEDK---LKNEDFLEYDN 94 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHH-----HHHH---HHTTCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHH-----HHHh---hhccchhhhhh
Confidence 56899999999999999999999886322334332221111 11223333322 2211 22344454443
Q ss_pred eeccCCcccCcc-eeecCCCceEEEEehhhhhhcccCCc---c-EEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHH
Q 006667 116 YDFKSSSRIGYR-TLEVPSSRIVIIEGIYALSEKLRPLI---D-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 190 (636)
Q Consensus 116 YDf~t~~R~~~e-ti~v~~~dVIIVEGiyaL~~eLRdl~---D-LKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl 190 (636)
|........... ...+....+++++.-+..-...|..+ + ..+|+..+.-..|.+++ ..++...++.+.+++
T Consensus 95 ~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~----~~~d~~~~~~i~~~l 170 (218)
T 1z6g_A 95 YANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL----LTRNTENQEQIQKRM 170 (218)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH----HHTCCCCHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH----HhcCCCCHHHHHHHH
Confidence 322111000000 00122334556653333224455444 4 78999877766666555 345665566666665
Q ss_pred hcCCcchhhhccCCcCCccEEEeCC
Q 006667 191 ETVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 191 ~~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
..+++... +.. ...||.||.++
T Consensus 171 ~~~~~~~~-~~h--~~~~d~iiv~~ 192 (218)
T 1z6g_A 171 EQLNIELH-EAN--LLNFNLSIIND 192 (218)
T ss_dssp HHHHHHHH-HHT--TSCCSEEEECS
T ss_pred HHHHHHHH-hhc--ccCCCEEEECC
Confidence 55555543 332 36899999754
No 99
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.07 E-value=4.3e-06 Score=82.88 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=32.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~ 77 (636)
..+||.|-||+||||+|.|+.|++.| ++..||+.+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~-g~~hIstGdll 64 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSGDLL 64 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH-CCEEECHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-CCceEcHHHHH
Confidence 35789999999999999999999999 58899998754
No 100
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.02 E-value=1.5e-05 Score=74.59 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|+|.|++||||||+++.|++.++ .+.+++.|.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 456899999999999999999999874 25567777663
No 101
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.01 E-value=1.5e-05 Score=85.46 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=68.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcccccCCCCCcccccHHHHHHHH-HhhhCCCceeeeeeec
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI-RGLKEGKAVQVPIYDF 118 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~~dgnfD~P~afD~dlL~~~L-~~Lk~Gk~I~iPvYDf 118 (636)
+..+|.|+|++||||||+|+.|++.+ +..+|+.|.+.. +..+.+.+ ..+..|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~-~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~-------- 311 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA-GYVHVNRDTLGS----------------WQRCVSSCQAALRQGKR-------- 311 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG-TCEECCGGGSCS----------------HHHHHHHHHHHHHTTCC--------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc-CcEEEccchHHH----------------HHHHHHHHHHHHhcCCc--------
Confidence 46799999999999999999999988 488899887621 22233322 23444433
Q ss_pred cCCcccCcceeecCCCceEEEEehhhhh---hccc------CCccEEEEEeCChhhHHHHHHhhhhhh--cCCCHHHHHH
Q 006667 119 KSSSRIGYRTLEVPSSRIVIIEGIYALS---EKLR------PLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIH 187 (636)
Q Consensus 119 ~t~~R~~~eti~v~~~dVIIVEGiyaL~---~eLR------dl~DLKIFVDad~D~RL~RRI~RDi~e--RGrslEeVl~ 187 (636)
+|+++..... ..+. ...-..||++++.++++.|...|.... +....++++.
T Consensus 312 ------------------vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~ 373 (416)
T 3zvl_A 312 ------------------VVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMF 373 (416)
T ss_dssp ------------------EEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHH
T ss_pred ------------------EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHH
Confidence 2333332111 1111 122367899999999877766665422 2244667777
Q ss_pred HHHhcC
Q 006667 188 QISETV 193 (636)
Q Consensus 188 qyl~~V 193 (636)
++....
T Consensus 374 ~~~~~~ 379 (416)
T 3zvl_A 374 SYRKQF 379 (416)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 776543
No 102
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.99 E-value=2.7e-05 Score=76.30 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=63.8
Q ss_pred CCCceEecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCccc--ccCCCCCcccccHHHHHHHHHhhhCC
Q 006667 31 SDRYEIVPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI--IDGNFDDPRLTDYDTLLENIRGLKEG 108 (636)
Q Consensus 31 ~~~~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r~--~dgnfD~P~afD~dlL~~~L~~Lk~G 108 (636)
+++--+++.+.++|+|.||||||||||++.|.+.++.....+.-.-.+.++. .++. +....+.+.+.+.+ .++
T Consensus 9 ~~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~--~y~fvs~~~f~~~i---~~~ 83 (197)
T 3ney_A 9 SGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGK--EYHFISTEEMTRNI---SAN 83 (197)
T ss_dssp -------CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTS--SCEECCHHHHHHHH---HTT
T ss_pred cccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccc--cceeccHHHhhhhh---hhh
Confidence 5666678889999999999999999999999998863221111111222221 1110 11123445554433 456
Q ss_pred CceeeeeeeccC-CcccCcceeecCCCceEEEEehhhhhhcccC--CccEEEEEeCCh
Q 006667 109 KAVQVPIYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRP--LIDLRVSVTGGV 163 (636)
Q Consensus 109 k~I~iPvYDf~t-~~R~~~eti~v~~~dVIIVEGiyaL~~eLRd--l~DLKIFVDad~ 163 (636)
..+++-.|.-.. ++....-.-.+....++|++.-.-....++. ..-+.|||..|.
T Consensus 84 ~fle~~~~~~n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps 141 (197)
T 3ney_A 84 EFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTD 141 (197)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECC
T ss_pred hhhhhhhhhceecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCC
Confidence 666654432111 1110000011345577888764443334442 223789999665
No 103
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.96 E-value=5.8e-06 Score=79.42 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=30.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC---C--cEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP---S--IAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~---~--v~VIsmDdY~ 77 (636)
..+|+|.|++||||||+++.|++.++ + +.+++.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 56899999999999999999999874 3 5566666654
No 104
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=97.94 E-value=1.7e-05 Score=75.01 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=67.1
Q ss_pred eeeeEecCCCCCcccccce-EEeeecCCeEEEEEeeeecCCCcccccceeEEEeeechhh--hhhcCCeEEEEEEeeeee
Q 006667 255 TYDIYLLPPGEDPDACQSY-LRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGG--LMALGYTIATILKRSSHI 331 (636)
Q Consensus 255 ~~DIYLlpPt~df~~tdea-LRiR~~dg~~~Ltykgp~~d~~fiikPR~efev~v~~~~g--L~~LGy~~aa~V~R~re~ 331 (636)
..+.|+.++ .+.+ +|+|..+..+.||||+|. . ..|.|||..+...+. |+++. .+..|.|.|.+
T Consensus 25 i~QgYl~~~------~~~~~vRvR~~g~~~~lT~Kg~~----g--~~R~E~E~~I~~~~~~~ll~~~--~~~~I~K~Ry~ 90 (153)
T 2fbl_A 25 LRQGYLTTP------TDSIELRLRQQGTEYFMTLKSEG----G--LSRQEYEIQIDVTQFEMLWPAT--EGRRVEKTRYS 90 (153)
T ss_dssp EEEEESSCT------TSSSEEEEEEETTEEEEEEEC------------CEEEEEECHHHHHHHGGGG--TTSEEEEEEEE
T ss_pred EEEEEecCC------CCceEEEEEEeCCEEEEEEEcCC----C--ceeEEEEEECCHHHHHHHHhhC--CCCEEEEEEEE
Confidence 348999866 3567 999999999999999998 3 679999988844333 44432 37789999999
Q ss_pred eeeCC-EEEEeecccccCc--ceEEEecccHH
Q 006667 332 FYDDR-VCVKTDWLEQLNR--KYVQVQGRDRL 360 (636)
Q Consensus 332 y~~~~-~~i~lD~ve~Lg~--~FveIeg~~r~ 360 (636)
|..++ .++.+|.++|-.. .++|||-.+-.
T Consensus 91 ~~~~~~~~~evD~f~g~~~gL~~aEvE~~~e~ 122 (153)
T 2fbl_A 91 GKLPDGQLFELDVFAGHLSPLMLVEVEFLSED 122 (153)
T ss_dssp EECTTCCEEEEEEECGGGTTCEEEEEEESSHH
T ss_pred EEcCCcEEEEEEEECCcCCCeEEEEEEecCcc
Confidence 99999 9999999998432 58888865543
No 105
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.93 E-value=4e-05 Score=80.50 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=32.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
.++|+|+|||||||||||..|++.++ ..+|+.|++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-cceeecCcc
Confidence 46899999999999999999999995 889999996
No 106
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.90 E-value=4.2e-05 Score=80.87 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=32.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
++|.|.||+||||||||..|++.++ ..+|+.|++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC-CcEEccccc
Confidence 5899999999999999999999995 889999996
No 107
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.83 E-value=3.6e-05 Score=75.92 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITM 73 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsm 73 (636)
+..+|.|.|++||||||+++.|++.++ +..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 467999999999999999999999986 2444443
No 108
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.78 E-value=1.9e-05 Score=77.26 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
+|.|-||+||||+|.|+.|++.| ++..||+.+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-g~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-GFVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHHHHH
Confidence 57789999999999999999999 589999988643
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.73 E-value=2.8e-05 Score=74.01 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC--CcE--EEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP--SIA--VITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~--VIsmDdY~~ 78 (636)
+..+|+|.|++||||||+++.|+..++ +.. .++.|++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 456899999999999999999999873 333 677777653
No 110
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.73 E-value=4.9e-05 Score=84.11 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
..+|.+.|.+||||||+|++|++.++ .+.+++.|+|.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 45899999999999999999999863 46789999974
No 111
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.69 E-value=0.00021 Score=74.85 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=32.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
.++|.|+||+||||||||..|++.++ ..+|+.|++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP-VELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC-CcEEecccc
Confidence 46899999999999999999999995 889999995
No 112
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.67 E-value=1.9e-05 Score=88.05 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
..+|.++|++||||||+|+.|++.++ .+.+++.|.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 45899999999999999999999874 2567777765
No 113
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.61 E-value=0.00015 Score=76.23 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=31.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
++|+|+||+||||||+|..|++.++ ..+|++|++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-CELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-EEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-CcEEeccch
Confidence 5899999999999999999999995 899999997
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.58 E-value=0.00016 Score=71.29 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=24.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.||+|||||||.+.|...++
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999999875
No 115
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.56 E-value=6.5e-05 Score=75.39 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=30.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
-+||.|++||||||+|+.|++.+ ++..|++++..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~-g~~~is~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF-GIPQISTGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCCEECHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh-CCCeeechHHHH
Confidence 46889999999999999999999 589999988643
No 116
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.54 E-value=9e-05 Score=84.11 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMD 74 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmD 74 (636)
...+|.|+|.+||||||+|+.|++.+. +..++.+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 456899999999999999999999872 34555555
No 117
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.53 E-value=0.00034 Score=66.97 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.++++|.||+||||||+.+.|...++
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998765
No 118
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.47 E-value=0.00028 Score=68.81 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+.|.|-|+.||||||.++.|++.|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5788999999999999999999874
No 119
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.44 E-value=0.00016 Score=71.38 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=32.8
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEccc
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMDN 75 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmDd 75 (636)
..|..||+|+|-+||||+|+|+.+.+.++ ++.+++|-+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 34678999999999999999999999774 578888876
No 120
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.36 E-value=5.5e-05 Score=75.29 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
....+|.|.|++||||||+++.|++.++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999999874
No 121
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.35 E-value=0.00013 Score=68.58 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
..+|+|+|++||||||+|+.|++.+++..+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 458999999999999999999999854666766643
No 122
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.34 E-value=0.00011 Score=74.90 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=33.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY~~ 78 (636)
...+|.|+|+|||||||+|+.|++.++ +...|+.|.|+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 457999999999999999999999985 578899988753
No 123
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.30 E-value=0.00014 Score=78.57 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=32.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
|.++|+|+|||||||||||..|++.++ ..+|++|+
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds 35 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDS 35 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCC-CeEeecCc
Confidence 457899999999999999999999995 78999999
No 124
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.24 E-value=0.00019 Score=80.39 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=29.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC--C---cEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP--S---IAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~--~---v~VIsmDdY~ 77 (636)
..+|.|+|.+||||||+|+.|++.|+ + +.+++.|.++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 45899999999999999999999874 2 4566667653
No 125
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.18 E-value=0.00022 Score=70.18 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|.+.|++||||||+++.|++.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999874
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.17 E-value=0.00018 Score=67.04 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=29.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY 76 (636)
..+|+|.|++||||||+++.|+..+. +...++.|++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 57899999999999999999998753 3446677765
No 127
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.12 E-value=0.00014 Score=72.79 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...+|.|.|++||||||+++.|++.+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999999874
No 128
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.11 E-value=0.00028 Score=69.93 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=33.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccccC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNYND 78 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY~~ 78 (636)
..+|.|.|++||||||+|+.|++.++ ++.+++.|.|..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS 70 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence 56899999999999999999999986 467888888753
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.07 E-value=0.00034 Score=65.38 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=31.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~ 78 (636)
.+++|.|++||||||+++.|+..+++...++.|++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 4789999999999999999998776556788888753
No 130
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.05 E-value=0.00032 Score=67.75 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=24.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP--SIAVITM 73 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsm 73 (636)
.|.|-|+-||||||.++.|++.|. +..++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578899999999999999999874 4444443
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.60 E-value=0.00082 Score=65.88 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=28.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
..+|+|.|++||||||+++.|++.++ ...++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg-~~~~~~G~i 61 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG-LQHLSSGHF 61 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC-CCCEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-CeEecHHHH
Confidence 35899999999999999999999884 555666654
No 132
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.58 E-value=0.0034 Score=68.03 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
..+|.+.|.+||||||++++|++.++ .+..++.|.+.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r 79 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 79 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhh
Confidence 45899999999999999999998753 35667777653
No 133
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.51 E-value=0.0017 Score=64.32 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=33.7
Q ss_pred EecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 36 IVPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 36 Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
.+.+..+.|+|+|+|||||||+|..|++.+. .+|+.|..
T Consensus 29 ~v~~~g~~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~ 67 (205)
T 2qmh_A 29 LVDIYGLGVLITGDSGVGKSETALELVQRGH--RLIADDRV 67 (205)
T ss_dssp EEEETTEEEEEECCCTTTTHHHHHHHHTTTC--EEEESSEE
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHHhCC--eEEecchh
Confidence 3556678999999999999999999999873 89999974
No 134
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.44 E-value=0.0017 Score=60.51 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=26.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY 76 (636)
..+++|.|++|||||||++.+. ++..+++.|.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~---~~~~~~~~d~~ 41 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF---KPTEVISSDFC 41 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS---CGGGEEEHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHc---cCCeEEccHHH
Confidence 5689999999999999999853 45667777754
No 135
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.43 E-value=0.00061 Score=64.33 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
++|+|.|++||||||+++.|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999874
No 136
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.28 E-value=0.0016 Score=64.47 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=28.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEE
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVIT 72 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIs 72 (636)
..+|+|.|+.||||||+|+.|++.++++.++.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 46899999999999999999999996566664
No 137
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.23 E-value=0.0029 Score=60.42 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS 67 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~ 67 (636)
..+++|.||+||||||+++.|...++.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~~ 46 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIPN 46 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 468999999999999999999998863
No 138
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.12 E-value=0.0032 Score=60.23 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=27.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMD 74 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmD 74 (636)
++|+|+|++||||||++.+|...+. .+.+|..|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 5899999999999999999998753 35666665
No 139
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.08 E-value=0.0056 Score=63.42 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=31.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|+|.|++||||||++..|+..+. .+.++..|-|.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 467999999999999999999998763 47778888653
No 140
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.98 E-value=0.004 Score=62.58 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=28.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
.+|+|+|+.||||||+|+.|.+.+ ++.++++.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~-g~~~~~~~~ 34 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY-SAVKYQLAG 34 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-CEEECCTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCeEEecCh
Confidence 489999999999999999999987 477766654
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.88 E-value=0.0072 Score=65.73 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=32.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|++.|++||||||++.+|+..+. .+.+++.|-|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 478999999999999999999998763 57788988764
No 142
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.87 E-value=0.0086 Score=57.42 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVL 62 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLa 62 (636)
..+++|.||+|||||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 5699999999999999999988
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.71 E-value=0.01 Score=64.81 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=32.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
++.+|+++|++||||||++.+|+..+. .+.+++.|-|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 468999999999999999999998753 578899987653
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.71 E-value=0.0067 Score=57.16 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+++|.|++|||||||++.|+..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999654
No 145
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.69 E-value=0.011 Score=61.39 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
+..+|+|.|++|+||||++..|+..+. .+.++..|-|
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 467999999999999999999998763 4777888754
No 146
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.60 E-value=0.007 Score=57.30 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+++|.|++|||||||++.|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999999754
No 147
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.59 E-value=0.0064 Score=62.76 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|+|.|++||||||++++|+..++ .+.+...|-|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 356999999999999999999998763 46666666553
No 148
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.59 E-value=0.0052 Score=56.93 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
...++|.||+|+||||+++.++..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999876
No 149
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.57 E-value=0.0081 Score=62.77 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=32.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
+..+|+|.|++||||||++++|+..+. .+.+...|-|..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~ 170 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRA 170 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccccc
Confidence 467999999999999999999998763 477777776643
No 150
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.52 E-value=0.0076 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
++++|+|++||||||+++.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999875
No 151
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.52 E-value=0.0078 Score=62.04 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+++|.|++||||||++++|+..++ .+.+...|-|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 467999999999999999999998763 45566666553
No 152
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.45 E-value=0.0075 Score=60.78 Aligned_cols=26 Identities=23% Similarity=0.586 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.||+||||||+.+.|...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999999999999875
No 153
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.45 E-value=0.013 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+.|.|++|+||||+++.+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999986
No 154
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.44 E-value=0.01 Score=55.48 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|+.|||||||.+.|...+|
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 356899999999999999999999875
No 155
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.43 E-value=0.0073 Score=57.31 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.++|.|++|||||||.+.|...++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999874
No 156
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.41 E-value=0.014 Score=61.91 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|+|.|++||||||++++|+..++ .+.+...|-|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 467999999999999999999998863 45666666553
No 157
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.35 E-value=0.01 Score=55.97 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=28.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
...+.|.|++|+||||+|+.+++.+. .+..++.+++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45788999999999999999998753 3566777665
No 158
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.32 E-value=0.015 Score=64.57 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|+|.|++||||||++++|+..+. .+.+...|.|.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 467999999999999999999998763 35455566553
No 159
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.32 E-value=0.0087 Score=64.83 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=32.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|+|.|++|+||||++..|+..+. .+.++++|-|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 356899999999999999999998762 58889998765
No 160
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.29 E-value=0.01 Score=58.15 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=27.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITM 73 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsm 73 (636)
...+|.|.|++||||||+++.|++.+. +..++.+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 356899999999999999999999875 3444443
No 161
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.27 E-value=0.0093 Score=61.22 Aligned_cols=38 Identities=34% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC-----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~-----~v~VIsmDdY~ 77 (636)
+..+|++.|++||||||++..|+..+. .+.++.+|.|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 467999999999999999999997652 47788888764
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.23 E-value=0.053 Score=54.92 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMD 74 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmD 74 (636)
..|.|.|++|+|||++|+.++..++ ....++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 3478999999999999999999985 23334443
No 163
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.21 E-value=0.0068 Score=58.62 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+|.|.||+||||||+|.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 4789999999999999999976
No 164
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.20 E-value=0.016 Score=56.16 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=27.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY 76 (636)
.+-|.|.|++|+||||+|+.++..++ .+..++..++
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~ 75 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEF 75 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 45688999999999999999999874 2334444444
No 165
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.18 E-value=0.0088 Score=62.85 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++||||||+.+.|...++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356899999999999999999999876
No 166
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.18 E-value=0.0084 Score=59.34 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 366999999999999999999998764
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.13 E-value=0.017 Score=57.47 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=26.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITM 73 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsm 73 (636)
+..-+.|.|++|+||||+|+.++..++ +.++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~-~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS-ATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT-CEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC-CCeEEe
Confidence 456789999999999999999999984 444433
No 168
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.13 E-value=0.014 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+.|.|++|+||||+|+.+++.+
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999886
No 169
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.11 E-value=0.0052 Score=58.36 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
++++|.|+||||||||++.|...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999999998864
No 170
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.10 E-value=0.018 Score=58.28 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=27.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
.+-|+|.|++|+||||+|+.|+..++ ...+..+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIK 81 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEEC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEE
Confidence 45789999999999999999999984 5555544
No 171
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.10 E-value=0.013 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
-++|.|++|+||||+|+.|+..++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999874
No 172
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.09 E-value=0.012 Score=55.30 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=26.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDd 75 (636)
..+++|.|++|||||||+..|+..-+ ++.+++.+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 46999999999999999999987211 355555543
No 173
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.06 E-value=0.013 Score=65.11 Aligned_cols=26 Identities=4% Similarity=-0.079 Sum_probs=23.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+|.++|.+||||||+|+.|++.|+
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999985
No 174
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.05 E-value=0.021 Score=63.21 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
-+.++|+|.|.+||||||++.+|+..+. .+.+++.|-|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3467999999999999999999997652 57888888764
No 175
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.04 E-value=0.015 Score=59.07 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDd 75 (636)
++.+++.||+|+|||++|+.|++.++ .+..+++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~ 71 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGE 71 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHH
Confidence 35789999999999999999999985 344455433
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.93 E-value=0.02 Score=56.50 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+-+.|.|++|+||||+|+.|+..++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44689999999999999999999985
No 177
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.90 E-value=0.015 Score=55.62 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=26.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmDd 75 (636)
..+++|.|++||||||||..++..+ + ++.+++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4699999999999999998887653 1 455666553
No 178
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.86 E-value=0.013 Score=58.10 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366999999999999999999998764
No 179
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.86 E-value=0.011 Score=57.95 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999997764
No 180
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.84 E-value=0.013 Score=58.13 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 181
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.77 E-value=0.021 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~ 66 (636)
++|.|++|+||||+++.|+..++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999875
No 182
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.76 E-value=0.018 Score=60.78 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=23.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+.-+|+|+||+||||||+.+.|...++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 345899999999999999999988764
No 183
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.74 E-value=0.013 Score=57.57 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 466999999999999999999998764
No 184
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.73 E-value=0.018 Score=55.08 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=22.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..+++|.|++|||||||+..|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 469999999999999999999984
No 185
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.72 E-value=0.021 Score=59.11 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=27.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
.+..-|.+.||+|+|||++|+.|++.++ ..++..+
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~-~~~~~~~ 83 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLD-VPFTMAD 83 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcC-CCEEEec
Confidence 3455789999999999999999999984 4444443
No 186
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.70 E-value=0.024 Score=57.21 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=24.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
++|.||+|+||||+++.|+..++ ...+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~-~~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG-LNFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT-CEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcC-CCEEEEE
Confidence 89999999999999999999885 3444443
No 187
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.70 E-value=0.014 Score=58.35 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466999999999999999999998764
No 188
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.70 E-value=0.015 Score=58.80 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 189
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.68 E-value=0.018 Score=57.45 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|.|++|||||||.+.|...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999985
No 190
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.68 E-value=0.022 Score=56.30 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=27.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY 76 (636)
..-+.|.|++|+|||++|+.+++.++ .+..+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 34578999999999999999999985 3445555554
No 191
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.64 E-value=0.014 Score=59.48 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.||+|||||||.+.|...++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 356999999999999999999998764
No 192
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.63 E-value=0.015 Score=53.59 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+...++|.|++||||||+++.+...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56689999999999999999999876
No 193
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=94.63 E-value=0.068 Score=55.00 Aligned_cols=155 Identities=10% Similarity=0.106 Sum_probs=77.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc--cc---cCCCCCcccccHHHHHHHHHhhhCCCceeee
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--II---DGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 114 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r--~~---dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iP 114 (636)
..++|.|+|| ||+|+.++|.+.+|.-...+.-.-.++++ +. +|.|- -+-+.+. ..+.+|+.+++-
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv----~s~eef~---~~i~~g~flE~~ 173 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFV----SSREKME---KDIQAHKFIEAG 173 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEEC----SCHHHHH---HHHHTTCEEEEE
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEec----CCHHHHH---HHHHCCCcEEEE
Confidence 3578889998 79999999999886211111111123332 12 23332 0222222 335578888876
Q ss_pred eeeccC-CcccCcceeecCCCceEEEEehhhhhhcc--cCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHh
Q 006667 115 IYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKL--RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 191 (636)
Q Consensus 115 vYDf~t-~~R~~~eti~v~~~dVIIVEGiyaL~~eL--Rdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~ 191 (636)
.|.-.. ++....-.-.......+|++.-......+ ...+-+.|||..|.-..|.+ + ..|| +.+++..++..
T Consensus 174 ~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~-L----~~R~-t~~~i~~rl~~ 247 (295)
T 1kjw_A 174 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-I----NKRI-TEEQARKAFDR 247 (295)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-H----CTTS-CHHHHHHHHHH
T ss_pred EEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHH-H----HhcC-CHHHHHHHHHH
Confidence 654221 11100000012334566666443222222 34455999999886655554 3 3466 34554444433
Q ss_pred cCCcchhhhccCCcCCccEEEeCC
Q 006667 192 TVYPMYKAFIEPDLQTAHIKIINK 215 (636)
Q Consensus 192 ~VrP~~ekfIePtk~~ADIIIpN~ 215 (636)
..+ ....| ....|++|.|+
T Consensus 248 a~~-~e~~~----~~~fd~vivNd 266 (295)
T 1kjw_A 248 ATK-LEQEF----TECFSAIVEGD 266 (295)
T ss_dssp HHH-HHHHH----GGGCSEEECCS
T ss_pred HHH-HHHhc----cccCeEEEECc
Confidence 211 11122 24578888764
No 194
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.61 E-value=0.016 Score=60.20 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPS 67 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~ 67 (636)
+..+++|.||+|||||||++.|...+.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 3669999999999999999999998743
No 195
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.60 E-value=0.043 Score=59.43 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=31.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDdY~ 77 (636)
+.++|+++|.+|+||||+|..|+..+ + .+.++++|-|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 46799999999999999999999764 2 58889999764
No 196
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.59 E-value=0.015 Score=58.51 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466999999999999999999998764
No 197
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.55 E-value=0.015 Score=58.13 Aligned_cols=27 Identities=22% Similarity=0.592 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 198
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.55 E-value=0.019 Score=57.21 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=23.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+++|.|++|||||||.+.|+..++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999998764
No 199
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.52 E-value=0.016 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 366999999999999999999997664
No 200
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.50 E-value=0.018 Score=57.10 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 201
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.47 E-value=0.021 Score=57.54 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|.|++|||||||.+.|...
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999976
No 202
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.46 E-value=0.016 Score=58.58 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 203
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.43 E-value=0.027 Score=57.64 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
+..+|+|.|++|+||||++..|+..+. .+.++..|-+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 578999999999999999999998763 4677777754
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.42 E-value=0.02 Score=60.55 Aligned_cols=27 Identities=22% Similarity=0.554 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+|+|.|++||||||+.+.|...++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 467899999999999999999998763
No 205
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.42 E-value=0.033 Score=57.30 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=26.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEE
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVIT 72 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIs 72 (636)
+.+-|.|.||+|+|||++|+.++..+.+..++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 346789999999999999999999884344433
No 206
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.41 E-value=0.024 Score=59.10 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=24.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
...++|.|++|||||||++.|+..++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999999885
No 207
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.39 E-value=0.011 Score=66.13 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=30.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC---C--cEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP---S--IAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~---~--v~VIsmDdY~ 77 (636)
+..+|+|.|++||||||+++.|+..++ + +.+++.|++.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 356899999999999999999999874 2 4457777653
No 208
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.37 E-value=0.015 Score=57.00 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999998764
No 209
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.36 E-value=0.018 Score=58.19 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 467999999999999999999998764
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.35 E-value=0.026 Score=56.24 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=28.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
...+++.|++|+||||+|+.|++.+. .+..+++..+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 35789999999999999999999863 2455666655
No 211
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.31 E-value=0.03 Score=55.67 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~ 66 (636)
++|.|++|+||||+++.|+..++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999999885
No 212
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.31 E-value=0.023 Score=58.43 Aligned_cols=33 Identities=36% Similarity=0.467 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC--CcEEEEcc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP--SIAVITMD 74 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~--~v~VIsmD 74 (636)
++++|+|++||||||+.+.|....+ .+.||.-|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 5799999999999999999998653 35555544
No 213
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.30 E-value=0.019 Score=57.86 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 466999999999999999999998764
No 214
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.30 E-value=0.022 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+.|.|++|+||||+++.+++.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998763
No 215
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.28 E-value=0.021 Score=57.43 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466999999999999999999998764
No 216
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.26 E-value=0.019 Score=55.17 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+++|.|++||||||+.+.|+..++
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998763
No 217
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.26 E-value=0.016 Score=56.60 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..+++|.|++|||||||.+.|...
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458899999999999999999987
No 218
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.25 E-value=0.037 Score=53.84 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=29.5
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
+.+..+=|+|+|+||+||||+|..|.+. +..+++-|.
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r--G~~lvaDD~ 48 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR--GHQLVCDDV 48 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT--TCEEEESSE
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc--CCeEecCCE
Confidence 3445667999999999999999999986 566666554
No 219
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.23 E-value=0.015 Score=60.58 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++||||||+.+.|...++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45899999999999999999999875
No 220
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.21 E-value=0.02 Score=57.35 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 221
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.20 E-value=0.028 Score=59.91 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=25.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEE
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVIT 72 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIs 72 (636)
..+|+|.||+||||||+++.|+..+++ .++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g-~~~~ 199 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGG-KALN 199 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC-EEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC-cEEE
Confidence 569999999999999999999998753 3444
No 222
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.19 E-value=0.021 Score=57.25 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 356899999999999999999998764
No 223
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.17 E-value=0.021 Score=58.18 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|+..++
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 466999999999999999999998764
No 224
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.17 E-value=0.041 Score=50.72 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=25.1
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+...+.+|.|++||||||+.++|.-.++
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 344444999999999999999999998774
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.15 E-value=0.031 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+.|.|++|+||||+|+.|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999875
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.14 E-value=0.032 Score=60.52 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
+..+|++.|++||||||++..|+..+. .+.++..|-|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 678999999999999999999998863 4777777754
No 227
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.12 E-value=0.03 Score=55.32 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..-+.|.|++|+|||++|+.+++.++
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34688999999999999999999874
No 228
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.11 E-value=0.02 Score=56.82 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
...+|.|.|++||||||+++.|++.++
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999874
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.11 E-value=0.021 Score=63.06 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|+||+||||||+.+.|...++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44689999999999999999998875
No 230
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.08 E-value=0.016 Score=60.02 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 467999999999999999999998764
No 231
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.08 E-value=0.024 Score=56.77 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=22.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+++|.|++|||||||++.|+..+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999998875
No 232
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.02 E-value=0.039 Score=57.76 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||++.|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999999886
No 233
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.98 E-value=0.026 Score=55.67 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=24.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPS 67 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~ 67 (636)
..+|.+.|++||||||+++.|++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999863
No 234
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.97 E-value=0.026 Score=57.22 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+.|.||+|+||||+|+.++..+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999876
No 235
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.96 E-value=0.029 Score=60.50 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+|+|+||+||||||+.+.|...++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999998764
No 236
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.82 E-value=0.042 Score=56.07 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEE
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVIT 72 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIs 72 (636)
+.+-|.|.||+|+|||++|+.++..++ ..++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~-~~~~~ 81 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN-STFFS 81 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT-CEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC-CCEEE
Confidence 345789999999999999999999874 44433
No 237
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.71 E-value=0.034 Score=57.08 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=31.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
+..+|++.|++|+||||++..|+..+. .+.+++.|-|.
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 367999999999999999999998763 57788888654
No 238
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.70 E-value=0.031 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
+.|.|++|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999875
No 239
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.69 E-value=0.028 Score=57.92 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..++|.||+|+||||+++.|+..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4578899999999999999999874
No 240
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.61 E-value=0.044 Score=57.07 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=28.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----CCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~~v~VIsmDdY 76 (636)
..+++|.|++|||||||.+.|...+ +.+.++..|-.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 5689999999999999999998764 24667776643
No 241
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.59 E-value=0.039 Score=49.75 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L 65 (636)
-|.|.|++|+|||++|+.|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999999875
No 242
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.58 E-value=0.033 Score=55.48 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998653
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.58 E-value=0.048 Score=56.61 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=26.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
..-+.+.|++|+||||+|+.|++.++ ..++..|
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD-IPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC-CCEEEec
Confidence 44688999999999999999999985 3344333
No 244
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.53 E-value=0.062 Score=52.68 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
-|.|.|++|+|||++|+.|++.++
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 468899999999999999999875
No 245
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.50 E-value=0.047 Score=56.91 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmDd 75 (636)
..+|+|+|.+|+||||++..|+..+ + .+.++..|-
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 4588999999999999999998775 2 577888873
No 246
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.47 E-value=0.062 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+.+-|.|.|++|+|||++|+.|+..++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999999985
No 247
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.45 E-value=0.061 Score=58.86 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=27.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
.+.+.|.||+|+||||+|+.+++.+ ++.++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l-~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT-TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCCEEEEe
Confidence 4688999999999999999999998 46666554
No 248
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.35 E-value=0.057 Score=50.93 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC---CcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP---SIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~---~v~VIsmD 74 (636)
.++|+|.|.+||||||++..|...+. .+.++..|
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 45788999999999999999987642 24555544
No 249
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=93.32 E-value=0.089 Score=54.27 Aligned_cols=169 Identities=11% Similarity=0.093 Sum_probs=84.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc--cc---cCCCCCcccccHHHHHHHHHhhhCCCceee
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--II---DGNFDDPRLTDYDTLLENIRGLKEGKAVQV 113 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r--~~---dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~i 113 (636)
...+.|.|+|| ||+|+.++|.+.+|.....+.-.=.+.++ +. +|.|-. +-+.+. ..+.+|+.+++
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~----s~e~fe---~~i~~~~flE~ 167 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVS----SREQME---RDIQNHLFIEA 167 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECS----CHHHHH---HHHHTTCEEEE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccC----CHHHHH---HHHhcCceEEE
Confidence 34677888888 49999999999998422222211123332 12 233310 112222 23557888887
Q ss_pred eeeeccC-CcccCcceeecCCCceEEEE----ehhhhhhcccCCccEEEEEeCChhhHHHHHHhhhhhhcCCCHH-HHHH
Q 006667 114 PIYDFKS-SSRIGYRTLEVPSSRIVIIE----GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE-EIIH 187 (636)
Q Consensus 114 PvYDf~t-~~R~~~eti~v~~~dVIIVE----GiyaL~~eLRdl~DLKIFVDad~D~RL~RRI~RDi~eRGrslE-eVl~ 187 (636)
-.|.-.- ++....-.-.......+|+| |+-.+. .....-+.|||..|.-..|.+|+.| +|.+.. .+..
T Consensus 168 a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk--~~~~~pi~IFI~PpS~e~L~~r~~~----r~~e~~~~~~~ 241 (292)
T 3tvt_A 168 GQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQ--VAQLYPVAVFIKPKSVDSVMEMNRR----MTEEQAKKTYE 241 (292)
T ss_dssp EEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHH--HTTCCCEEEEECCSCHHHHHHTCTT----SCTTHHHHHHH
T ss_pred EEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcc--cccccceEEEEECCCHHHHHHHHhC----CCchhHHHHHH
Confidence 6654221 11110000011233455554 333332 1234458899999887666655433 344332 2222
Q ss_pred HHHhcCCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhccc
Q 006667 188 QISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKE 247 (636)
Q Consensus 188 qyl~~VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~~ 247 (636)
+.. -+...| .+..|+||.|+. .+-..++|++++.+.
T Consensus 242 r~~----k~e~e~----~~~fD~vIvNdd----------------le~a~~~l~~iI~~e 277 (292)
T 3tvt_A 242 RAI----KMEQEF----GEYFTGVVQGDT----------------IEEIYSKVKSMIWSQ 277 (292)
T ss_dssp HHH----HHHHHH----TTTCSEEECCSS----------------HHHHHHHHHHHHHHH
T ss_pred HHH----HHHHhh----hhhCCEEEECcC----------------HHHHHHHHHHHHHHh
Confidence 221 122222 245799997641 244567777777643
No 250
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.31 E-value=0.031 Score=57.37 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 467999999999999999999998764
No 251
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.31 E-value=0.045 Score=58.29 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|.-.++
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 367999999999999999999998764
No 252
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.30 E-value=0.038 Score=55.87 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=23.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++|||||||.+.|+..+|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p 55 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56899999999999999999987654
No 253
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.28 E-value=0.067 Score=55.91 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=28.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----CCcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~~v~VIsmDdY 76 (636)
..+|+|.|++|||||||.+.|...+ +.+.|+..|-+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 3578999999999999999999764 25778887754
No 254
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.20 E-value=0.061 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.++|.|++|+||||+++.+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 788999999999999999998874
No 255
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.16 E-value=0.042 Score=58.36 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.||+|||||||.+.|+-..+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 56999999999999999999998764
No 256
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.15 E-value=0.021 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+.|.|++|+|||++|+.|+..++
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67899999999999999999864
No 257
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.09 E-value=0.082 Score=56.90 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=26.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITM 73 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsm 73 (636)
+.+-|.|.||+|+|||++|+.|+..+.+..++..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 3467899999999999999999999843444443
No 258
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.03 E-value=0.052 Score=57.45 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.||+|||||||.+.|+-.++
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 259
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.02 E-value=0.053 Score=57.49 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.||+|||||||.+.|+-.++
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 356999999999999999999998764
No 260
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.01 E-value=0.085 Score=51.22 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=28.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC--C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM--P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L--~-~v~VIsmDd 75 (636)
..++++.|..|+||||++..|+..+ + .+.+++.|-
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4578889999999999999999654 2 577888884
No 261
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.00 E-value=0.084 Score=55.30 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
+.+-|.|.|++|+|||++|+.|+..++ ..++..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~-~~~~~v~ 180 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN-ATFFNIS 180 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT-CEEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc-CcEEEee
Confidence 456789999999999999999999984 4444443
No 262
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.00 E-value=0.054 Score=57.47 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.||+|||||||.+.|+-.++
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 263
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.95 E-value=0.055 Score=57.92 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.||+|||||||.+.|+-.++
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 56899999999999999999998764
No 264
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.90 E-value=0.047 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..-+.|.|++|+|||++|+.+++.+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999999876
No 265
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.90 E-value=0.057 Score=57.50 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.||+|||||||.+.|+-.++
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 356999999999999999999998764
No 266
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.86 E-value=0.072 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..++.|.|++||||||||..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 5699999999999999999999764
No 267
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.86 E-value=0.057 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.||+|||||||.+.|+-.++
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 356899999999999999999998764
No 268
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.82 E-value=0.06 Score=57.05 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
..++.|.|++||||||||..++..+. .+.+|+.+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 57999999999999999999987642 356676664
No 269
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.82 E-value=0.072 Score=57.84 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=27.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
++=|.+.||+|+|||++|++|+..++ +.++..+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~-~~~~~v~ 238 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK-AAFIRVN 238 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT-CEEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CCeEEEe
Confidence 45689999999999999999999984 5555554
No 270
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.78 E-value=0.064 Score=55.88 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=25.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITM 73 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsm 73 (636)
.+-|.|.||+|+|||++|+.|+..++ ..++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~-~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN-STFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT-CEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC-CCEEEe
Confidence 34578899999999999999999984 444433
No 271
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.77 E-value=0.08 Score=53.39 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=26.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
.++.++|++|+||||+|+.+++.++ ..++.++
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~-~~~~~i~ 80 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN-ADMMFVN 80 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT-EEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC-CCEEEEc
Confidence 4788999999999999999999984 5454443
No 272
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.74 E-value=0.099 Score=54.35 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=22.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..++.|.|++||||||||..++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999986
No 273
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.74 E-value=0.048 Score=57.53 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.||+|||||||.+.|+-..+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Confidence 56999999999999999999998764
No 274
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.66 E-value=0.052 Score=54.34 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+.|.|++|+||||+|+.+++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999874
No 275
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.64 E-value=0.079 Score=50.50 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=26.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDd 75 (636)
..++.|+|++|+|||+||..++... + .+.+++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 5699999999999999998876431 2 366667663
No 276
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.62 E-value=0.077 Score=54.01 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=22.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..++.|.|++||||||||..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999875
No 277
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.049 Score=59.46 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||++.|+..+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 456899999999999999999998763
No 278
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.57 E-value=0.063 Score=56.36 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----CCcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----PSIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~~v~VIsmDd 75 (636)
..++.|.|++||||||||..++... ..+.+++.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5699999999999999999998653 1467787775
No 279
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.53 E-value=0.13 Score=51.35 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDN 75 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDd 75 (636)
+++.|.|+.|+||||+++.+.+.+. .+.++++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 4899999999999999999998764 344555543
No 280
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.51 E-value=0.084 Score=57.44 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=27.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
++=|.+.||+|+|||++|++|+..++ +.++.++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~-~~f~~v~ 247 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN-ATFLKLA 247 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT-CEEEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC-CCEEEEe
Confidence 46788999999999999999999984 5555554
No 281
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.51 E-value=0.054 Score=54.74 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
...++|.|++|+||||+++.+++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999876
No 282
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.51 E-value=0.084 Score=57.48 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=26.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
++=|.+.||+|+|||++|++|+..++ +.++..+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~-~~~~~v~ 247 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG-ANFIFSP 247 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT-CEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC-CCEEEEe
Confidence 46788999999999999999999984 5554443
No 283
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.41 E-value=0.065 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
....+.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999876
No 284
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.41 E-value=0.065 Score=65.47 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...|+|.|+|||||||+++.|...+.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 466899999999999999999998763
No 285
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.39 E-value=0.06 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
...+.|.||+|+|||++|+.+++.++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999999875
No 286
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.38 E-value=0.064 Score=54.19 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.++|.|++|||||||.+.|....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999875
No 287
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.38 E-value=0.045 Score=57.74 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.||+|||||||.+.|+-.++
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56999999999999999999998764
No 288
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.37 E-value=0.062 Score=57.57 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.||+|||||||.+.|+..++
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 366999999999999999999997653
No 289
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.36 E-value=0.064 Score=59.66 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++||||||+.+.|...++
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 367999999999999999999998764
No 290
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.35 E-value=0.13 Score=47.10 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=29.4
Q ss_pred CCCCcchHHHHHHHHhhcCCCceEecCCCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 13 RRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 13 ~~~~~ll~~ql~~~~r~~~~~~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.++..-+.+++....+...... .-+...|+|.|++|||||||.+.|...
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~---~~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 23 KRKISQWREWIDEKLGGGSGGG---GSYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp TTBCHHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---CCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3444455555554433322211 123457899999999999999999875
No 291
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.34 E-value=0.074 Score=55.16 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=30.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
+..+|+|.|++|+||||+++.|...+. .+.+++.|-+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 356889999999999999999987642 4778887754
No 292
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.25 E-value=0.077 Score=58.74 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=27.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDd 75 (636)
+...+++.||+|+||||+|+.|+..++ ....++++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 566899999999999999999999874 223344443
No 293
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.20 E-value=0.094 Score=57.24 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=27.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
+..-|.+.||+|+||||+|+.|+..++ +..+..|
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~-~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-APFIKVE 82 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcC-CCceeec
Confidence 334588999999999999999999995 5555554
No 294
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=92.00 E-value=0.37 Score=55.19 Aligned_cols=169 Identities=11% Similarity=0.130 Sum_probs=85.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcccccCCcc--cc---cCCCCCcccccHHHHHHHHHhhhCCCceeeee
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--II---DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 115 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDdY~~~~r--~~---dgnfD~P~afD~dlL~~~L~~Lk~Gk~I~iPv 115 (636)
.++|.|.||+ |+|+.++|.+.++.-..++.-.-.+.++ +. +|.|- -+-+.+ -..+.+|+.+++-.
T Consensus 531 ~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv----~s~~~f---~~~i~~~~flE~~~ 600 (721)
T 2xkx_A 531 ARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFV----SSREKM---EKDIRAHKFIEAGQ 600 (721)
T ss_pred CCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEe----cCHHHH---HHHHhcCCceEEEE
Confidence 5788999994 9999999999886211111111123332 12 23332 022222 23456788888766
Q ss_pred eeccC-CcccCcceeecCCCceEEEEehhhhhhccc--CCccEEEEEeCChhhHHHHHHhhhhhhcCCCHHHHHHHHHhc
Q 006667 116 YDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 192 (636)
Q Consensus 116 YDf~t-~~R~~~eti~v~~~dVIIVEGiyaL~~eLR--dl~DLKIFVDad~D~RL~RRI~RDi~eRGrslEeVl~qyl~~ 192 (636)
|.-.. ++....-.........+|++.-......++ ..+-+.|||..+.-..|.+ +..||. .+++..++...
T Consensus 601 ~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-----l~~R~t-~~~~~~rl~~a 674 (721)
T 2xkx_A 601 YNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-----INKRIT-EEQARKAFDRA 674 (721)
T ss_pred ECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-----HhccCC-HHHHHHHHHHH
Confidence 54221 111110000123456677775433222222 5566999999887666655 334663 34443344322
Q ss_pred CCcchhhhccCCcCCccEEEeCCCCCCCCCCCCeeeecCCCcccHHHHHHHhcc
Q 006667 193 VYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 246 (636)
Q Consensus 193 VrP~~ekfIePtk~~ADIIIpN~f~p~~g~~n~v~iLKsa~~i~~d~I~~~L~~ 246 (636)
......| ....|++|.|+ + .+-..+++++++.+
T Consensus 675 -~~~e~~~----~~~fd~vi~Nd-~---------------l~~a~~~l~~~i~~ 707 (721)
T 2xkx_A 675 -TKLEQEF----TECFSAIVEGD-S---------------FEEIYHKVKRVIED 707 (721)
T ss_pred -HHHHHhc----cccCcEEEECc-C---------------HHHHHHHHHHHHHh
Confidence 1111111 24678888765 1 13445667777754
No 295
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.96 E-value=0.1 Score=56.12 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmD 74 (636)
.+-+.+.||+|+|||++|+.++..++ .+.++.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 35688999999999999999999985 24455444
No 296
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.95 E-value=0.099 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
...+.|.|++|+||||+|+.+++.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999875
No 297
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.94 E-value=0.12 Score=56.99 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCCCcEEEEc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMPSIAVITM 73 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~~v~VIsm 73 (636)
++|.||+|+||||||+.|+..++ +..+..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~-~~~i~i 95 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR-VPFITA 95 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT-CCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCEEEE
Confidence 89999999999999999999875 333333
No 298
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.91 E-value=0.062 Score=59.77 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++||||||+.+.|...++
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 467999999999999999999998774
No 299
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.88 E-value=0.099 Score=55.14 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmDd 75 (636)
..++.|.|++||||||||..++... + .+.+|+++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5699999999999999999988753 1 477787764
No 300
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=91.83 E-value=0.075 Score=55.90 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..|.|.|+.||||||+++.|++.|+
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999985
No 301
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.74 E-value=0.098 Score=56.52 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
++=|.+.||+|+|||++|++|+..++ +.+++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~-~~f~~v~ 214 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD-CKFIRVS 214 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT-CEEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC-CCceEEE
Confidence 35688999999999999999999984 5555554
No 302
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.64 E-value=0.082 Score=56.90 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.-++|.||+|+||||+|+.|+..+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999875
No 303
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.60 E-value=0.11 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..++++.|++|||||||.+.|. ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 5689999999999999999999 653
No 304
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.55 E-value=0.088 Score=49.98 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..++.|+|+.||||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999997776554
No 305
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.55 E-value=0.13 Score=48.59 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=25.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC-C--CcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM-P--SIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L-~--~v~VIsmD 74 (636)
...|+|.|.+|+|||||+..+...+ . .+.+|..|
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 3578888999999999999998763 2 24555544
No 306
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.49 E-value=0.036 Score=49.95 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L 65 (636)
-|.|.|++|+|||++|+.|....
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 37789999999999999998765
No 307
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.49 E-value=0.089 Score=52.29 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=25.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITM 73 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsm 73 (636)
.+-+.|.||+|+||||+|..|++.+.+ .+++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g-~i~~f 89 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQG-AVISF 89 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC-EECCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC-CeeeE
Confidence 346899999999999999999998753 34443
No 308
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.47 E-value=0.12 Score=56.94 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=27.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
+++=|.+.||+|+|||++|++|+..++ +.++..+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~-~~fi~vs 275 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD-ATFIRVI 275 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT-CEEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC-CCeEEEE
Confidence 356788999999999999999999984 5555554
No 309
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.47 E-value=0.085 Score=53.56 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHh
Q 006667 44 SFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~ 64 (636)
++|.||+|+||||+++.|+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999995
No 310
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.41 E-value=0.15 Score=53.30 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.7
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
.+...-|+|.|+||+||||+|..|.+. +..+++-|.
T Consensus 141 ~~~g~~vl~~G~sG~GKSt~a~~l~~~--g~~lv~dD~ 176 (314)
T 1ko7_A 141 DVYGVGVLITGDSGIGKSETALELIKR--GHRLVADDN 176 (314)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHT--TCEEEESSE
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHhc--CCceecCCe
Confidence 345678999999999999999999986 456665443
No 311
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.28 E-value=0.13 Score=46.69 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=21.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+...|++.|++|+|||||.+.|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999863
No 312
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.26 E-value=0.094 Score=56.25 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..++.|.|++|||||||+..|+-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 569999999999999999977643
No 313
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.25 E-value=0.12 Score=53.88 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=29.0
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEccc
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMDN 75 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmDd 75 (636)
+.+...-|+|+|+||+||||+|..|.+. +..+++=|.
T Consensus 143 v~~~g~gvli~G~sG~GKStlal~l~~~--G~~lv~DD~ 179 (312)
T 1knx_A 143 LEVFGVGVLLTGRSGIGKSECALDLINK--NHLFVGDDA 179 (312)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHTT--TCEEEEEEE
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc--CCEEEeCCE
Confidence 4455778999999999999999999874 466666554
No 314
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.22 E-value=0.056 Score=60.12 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.||+||||||+.+.|...++
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 467999999999999999999988764
No 315
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.21 E-value=0.067 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++||||||+.+.|...++
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 467999999999999999999998764
No 316
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.21 E-value=0.07 Score=59.65 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++||||||+.+.|...++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 467999999999999999999998774
No 317
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.19 E-value=0.075 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+.|.|++|+|||++|+.|++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999886
No 318
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.18 E-value=0.14 Score=51.48 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
+.++|+|+|..|+||||+|-.|+..+. .+.+|++|-
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 357888889999999999998888752 588899985
No 319
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.17 E-value=0.14 Score=56.19 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=23.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEE
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVIT 72 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIs 72 (636)
=|+|.||+|+||||+|+.|+...+ +.++.
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~-~~f~~ 79 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEAN-VPFFH 79 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT-CCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-CCeee
Confidence 378999999999999999999874 44443
No 320
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.16 E-value=0.14 Score=51.95 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
-+.+.|++|+|||++|+.|+..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 478899999999999999999885
No 321
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.14 E-value=0.16 Score=50.70 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=26.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
+++.|.|+.|+||||+++.+.+..+ +..++++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP-GILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS-EEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC-cEEEEee
Confidence 5889999999999999999999874 5555554
No 322
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.05 E-value=0.1 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
+.|.|++|+||||+|+.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999886
No 323
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.97 E-value=0.19 Score=55.18 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=25.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITM 73 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsm 73 (636)
.+-|+|.|++|+|||++|+.|+..++ ..++..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~-~~fv~v 269 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETG-AFFFLI 269 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCS-SEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhC-CCEEEE
Confidence 34689999999999999999999984 444443
No 324
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.97 E-value=0.15 Score=59.08 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=26.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
..-|+|.|++|+||||+|+.|+..++ ...+..+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~-~~~i~v~ 270 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETG-AFFFLIN 270 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTT-CEEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC-CcEEEEE
Confidence 45789999999999999999999885 4444433
No 325
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.96 E-value=0.12 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.|+|.|++|||||||.+.|....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999998753
No 326
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.92 E-value=0.1 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
+++.||+|+||||+++.++..+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999986
No 327
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.88 E-value=0.077 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.124 Sum_probs=21.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+...|+|.|++|||||||.+.|...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3557999999999999999988643
No 328
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.86 E-value=0.12 Score=57.17 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|.-.++
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998653
No 329
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.84 E-value=0.13 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.|+|.|++|||||||.+.|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999975
No 330
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.82 E-value=0.074 Score=59.40 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++||||||+.+.|...++
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 467999999999999999999998764
No 331
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.82 E-value=0.2 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
-|.|.|++|+|||++|+.|....+
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSS
T ss_pred cEEEECCCCchHHHHHHHHHHhCc
Confidence 578999999999999999999764
No 332
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.80 E-value=0.18 Score=54.71 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=24.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCcEEEEc
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMPSIAVITM 73 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~~v~VIsm 73 (636)
-+.|.|++|+||||+|+.|++.++ ...+.+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~-~~f~~l 81 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN-ADVERI 81 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT-CEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC-CCeEEE
Confidence 578999999999999999999984 444433
No 333
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.80 E-value=0.14 Score=45.07 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999999864
No 334
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.77 E-value=0.17 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|++.|.+|+|||||.+.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5788999999999999999875
No 335
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.72 E-value=0.32 Score=51.49 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=29.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmDd 75 (636)
..++.|.|++||||||||..++... + .+.+|+++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 5699999999999999999988763 1 577888875
No 336
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.67 E-value=0.16 Score=45.78 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..|+|.|++|+|||||.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999853
No 337
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=90.63 E-value=0.092 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..|.|.|+.||||||+++.|++.|.
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4788999999999999999999875
No 338
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.63 E-value=0.24 Score=54.07 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=26.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHH-------HhCC-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVL-------NFMP-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLa-------e~L~-~v~VIsmDd 75 (636)
.++|+|.|+.|.||||+|..+. ..|+ ++..++.+.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 5689999999999999999884 4464 344455443
No 339
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.62 E-value=0.12 Score=57.46 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999998764
No 340
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.59 E-value=0.2 Score=45.94 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=24.1
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+.....+.+|.|+.||||||+..+|.-.+
T Consensus 19 i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34556799999999999999999988554
No 341
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=90.58 E-value=0.094 Score=56.16 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...|.|.|+.||||||+++.|++.|.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345799999999999999999999875
No 342
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.55 E-value=0.16 Score=54.67 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDd 75 (636)
..++.|+|++|+||||||..++..+ + .|.+++++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 5699999999999999999988763 2 366777663
No 343
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.45 E-value=0.15 Score=49.94 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=29.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
++|+|+|..|+||||+|..|+..+. .+.+|++|-.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 5788899999999999999998762 5888999853
No 344
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.42 E-value=0.14 Score=48.69 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=27.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
|+|+|..|+||||+|..|+..+. .+.+|++|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56699999999999999998863 588899986
No 345
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.33 E-value=0.14 Score=56.50 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+++|.|++|||||||.+.|...++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 6899999999999999999998764
No 346
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.32 E-value=0.19 Score=54.92 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=29.2
Q ss_pred ecCC-CeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 37 VPIE-DTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 37 v~i~-~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
.+++ ++=|.+.||+|+|||++|++|+..++ +.++..+
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~-~~fi~v~ 248 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTS-ATFLRIV 248 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHT-CEEEEEE
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhC-CCEEEEE
Confidence 3443 46789999999999999999999984 6555554
No 347
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.32 E-value=0.14 Score=44.63 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|++.|.+|+|||||.+.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999999864
No 348
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.25 E-value=0.18 Score=51.68 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..-+.|.|++|+|||++|.+|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999864
No 349
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.22 E-value=0.18 Score=51.60 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC--C--CcEEEEcc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM--P--SIAVITMD 74 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L--~--~v~VIsmD 74 (636)
..++.|+|++|+||||||..++... . .+.+++++
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 6699999999999999999998653 1 35667766
No 350
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.21 E-value=0.16 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+++|.|++|+|||||.+.|....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4589999999999999999998654
No 351
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.20 E-value=0.15 Score=56.62 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|...+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46799999999999999999999865
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.17 E-value=0.21 Score=43.72 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|++.|.+|+|||||.+.|...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999864
No 353
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.15 E-value=0.16 Score=56.29 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356999999999999999999998764
No 354
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.10 E-value=0.16 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+++|.|+||||||||.+.|....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 5689999999999999999998765
No 355
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.04 E-value=0.18 Score=44.98 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 356
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.98 E-value=0.15 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+.|.|++|+||||+|+.+++.+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999999864
No 357
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.96 E-value=0.21 Score=48.43 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+++|+|++|||||++|..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7889999999999999886544
No 358
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.95 E-value=0.14 Score=56.08 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKV 61 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkL 61 (636)
..+++|.|++|||||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 569999999999999999994
No 359
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.91 E-value=0.24 Score=53.66 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=23.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|-|++|||||||.+.|+....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 56899999999999999999999874
No 360
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.80 E-value=0.23 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
--|+|.|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998864
No 361
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.78 E-value=0.18 Score=50.29 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=29.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
++|+|+|..|+||||+|..|+..+. .+.+|++|-.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6788899999999999999988752 5888999854
No 362
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.76 E-value=0.2 Score=44.11 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|++.|.+|+|||||.+.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 363
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.68 E-value=0.19 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
+.|.|++|+||||+|+.+++.+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999885
No 364
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.66 E-value=0.22 Score=58.08 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=28.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMPSIAVITMD 74 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~~v~VIsmD 74 (636)
+.+=|.+.||+|+|||++|+.|+..++ +.++..+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg-~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETG-AFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTT-CEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-CeEEEEE
Confidence 356789999999999999999999984 6666555
No 365
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.62 E-value=0.23 Score=52.21 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.0
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.++..+.+|.|++||||||+-.+|.-.+
T Consensus 20 ~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 20 EFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445689999999999999999988553
No 366
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.60 E-value=0.18 Score=56.91 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 577999999999999999999998763
No 367
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.59 E-value=0.21 Score=44.05 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 368
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.58 E-value=0.21 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..-|+|.|.+|+|||||.+.|...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999999874
No 369
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.54 E-value=0.23 Score=56.45 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEcccccC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITMDNYND 78 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsmDdY~~ 78 (636)
.-+.+.|++|+|||++|+.|++.++ .+..+++..|..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc
Confidence 3689999999999999999999985 244566666643
No 370
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.54 E-value=0.16 Score=55.12 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHh
Q 006667 44 SFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~ 64 (636)
++|.|++|||||||.+.|...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999865
No 371
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.49 E-value=0.17 Score=52.95 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..-++|.|++||||||+++.|...+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998763
No 372
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.47 E-value=0.25 Score=48.87 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=23.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 39 IEDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 39 i~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
.+..++.|+|++||||||++-.++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346799999999999999999888775
No 373
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.45 E-value=0.21 Score=44.07 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=19.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 006667 43 LSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae 63 (636)
-|++.|.+|+|||||.+.|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999985
No 374
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.38 E-value=0.22 Score=51.51 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
.+||+|+|--|.||||+|--|+..|- .|.+|++|-.
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 58999999999999999888777652 6889999943
No 375
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.37 E-value=0.22 Score=44.46 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 376
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.34 E-value=0.23 Score=46.12 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=27.0
Q ss_pred eEEEEe-CCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 42 TLSFEK-GPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 42 ~IIgIs-GgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
++|+|+ +..|+||||+|..|+..+. .+.+|++|.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 567777 5778999999999988753 588888884
No 377
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.33 E-value=0.2 Score=56.63 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+++|.|++|||||||.+.|...++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4799999999999999999998764
No 378
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.32 E-value=0.29 Score=51.33 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=23.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|-|++|||||||.+.|+....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56899999999999999999999874
No 379
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.32 E-value=0.19 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 006667 43 LSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae 63 (636)
-|+|.|++|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478899999999999999875
No 380
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.30 E-value=0.2 Score=55.98 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..++|.|++|+||||+|+.|+..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3688999999999999999999875
No 381
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.28 E-value=0.2 Score=56.44 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999998764
No 382
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.26 E-value=0.23 Score=43.92 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|++.|.+|+|||||.+.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999999864
No 383
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.25 E-value=0.21 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
+.+.|++|+||||+|+.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 384
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.09 E-value=0.23 Score=52.42 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=25.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC-CcEEEEc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP-SIAVITM 73 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~-~v~VIsm 73 (636)
..++.|.|++|+||||||..++...+ .+..++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 46789999999999999999987521 3555555
No 385
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.04 E-value=0.2 Score=44.19 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4788999999999999999864
No 386
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.02 E-value=0.18 Score=56.81 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|.-.++
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 456999999999999999999997653
No 387
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.01 E-value=0.19 Score=55.05 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=22.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..+++|.|++|||||||++.++...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999998764
No 388
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.97 E-value=0.25 Score=44.67 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
--|+|.|.+|+|||||.+.|...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999875
No 389
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.92 E-value=0.19 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
+.|.|++|+||||+|+.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 390
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.89 E-value=0.25 Score=43.44 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999863
No 391
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.88 E-value=0.29 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999863
No 392
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.87 E-value=0.25 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
No 393
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.84 E-value=0.2 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L 65 (636)
-+.|.|++|+|||++|+.|+..+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999986
No 394
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.82 E-value=0.23 Score=44.31 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 006667 43 LSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae 63 (636)
-|+|.|.+|+|||||.+.|..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578899999999999999864
No 395
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.77 E-value=0.25 Score=43.96 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 006667 43 LSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae 63 (636)
-|+|.|.+|+|||||.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 588899999999999999874
No 396
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.77 E-value=0.28 Score=43.80 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
...|+|.|.+|+|||||.+.|...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999753
No 397
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.77 E-value=0.2 Score=52.68 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmDd 75 (636)
..++.|+|++|+||||||..++... + .+.+++++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 5699999999999999999998763 1 366777764
No 398
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.77 E-value=0.18 Score=47.20 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=21.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
...-|+|.|.+|+|||||.+.|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999864
No 399
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.72 E-value=0.22 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+++|.|++|||||||.+.|....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 88999999999999999999754
No 400
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.71 E-value=0.21 Score=44.46 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=20.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..-|+|.|.+|+|||||.+.|...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3346888999999999999999853
No 401
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.69 E-value=0.047 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+++|.||+||||||+.+.|.-.++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 567799999999999999998764
No 402
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.67 E-value=0.27 Score=44.34 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 403
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.65 E-value=0.14 Score=57.84 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKV 61 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkL 61 (636)
..+++|.|++|||||||.+.|
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEEeeCCCCHHHHHHHH
Confidence 568999999999999999754
No 404
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.63 E-value=0.27 Score=43.79 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 405
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.62 E-value=0.25 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 006667 43 LSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae 63 (636)
-|+|.|.+|+|||||.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378899999999999999864
No 406
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.59 E-value=0.25 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..-|++.|.+|+|||||.+.|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 407
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=88.55 E-value=0.37 Score=52.92 Aligned_cols=30 Identities=20% Similarity=-0.073 Sum_probs=24.3
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCCCcEE
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMPSIAV 70 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v~V 70 (636)
|...++|.|+||||+| +.++|.+.+|+...
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~ 250 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQ 250 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEE
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCcee
Confidence 3356789999999999 99999999885433
No 408
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.48 E-value=0.25 Score=45.91 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=21.8
Q ss_pred EecCCCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 36 IVPIEDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 36 Iv~i~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
++..+..-|+|.|.+|+|||||.+.|...
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 33344556899999999999999999874
No 409
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.36 E-value=0.28 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=20.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..-|+|.|.+|+|||||.+.|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346889999999999999999864
No 410
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=88.35 E-value=0.17 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.9
Q ss_pred CeEEEEeCCCCCcHHHHH-HHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFT-EKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLA-kkLae~L~ 66 (636)
...|.|.|+.||||||++ +.|++.++
T Consensus 12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 12 VLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999 99999986
No 411
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.33 E-value=0.29 Score=43.14 Aligned_cols=21 Identities=29% Similarity=0.132 Sum_probs=19.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHh
Q 006667 44 SFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~ 64 (636)
|++.|.+|+|||||.+.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 788999999999999999764
No 412
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.31 E-value=0.32 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|++|+|||||.+.|...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 413
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=88.22 E-value=0.2 Score=58.83 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=17.7
Q ss_pred CeEEEEeCCCCCcHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTE 59 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAk 59 (636)
+++++|+|.|||||||||-
T Consensus 36 ~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 36 DALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp SSEEEEESSTTSSHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 7899999999999999984
No 414
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.21 E-value=0.22 Score=44.01 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.9
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 006667 43 LSFEKGPSGAGKTVFTEKVL 62 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLa 62 (636)
-|+|.|.+|+|||||.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47889999999999999885
No 415
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.17 E-value=0.37 Score=42.61 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999753
No 416
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.09 E-value=0.29 Score=44.27 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
...-|+|.|.+|+|||||.+.|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998754
No 417
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.09 E-value=0.37 Score=46.22 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=24.8
Q ss_pred ecCCCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 37 VPIEDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 37 v~i~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+...+.+.+|.|+.||||||+..+|.-.+
T Consensus 19 i~f~~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEeCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34556799999999999999999998665
No 418
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.01 E-value=0.12 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..+++|.|++|||||||.+.|....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 36799999999999999999987543
No 419
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.98 E-value=0.3 Score=43.68 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5788999999999999998853
No 420
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.89 E-value=0.34 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
-|+|.|.+|+|||||.+.+...+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478899999999999998888764
No 421
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=87.87 E-value=0.38 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
++|+|.|.+|+|||||.+.|...
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999853
No 422
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.75 E-value=0.3 Score=44.55 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.|...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999854
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.72 E-value=0.33 Score=43.48 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|++.|.+|+|||||.+.|...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.71 E-value=0.33 Score=43.46 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999998863
No 425
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.67 E-value=0.42 Score=54.55 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=29.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEcccccC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND 78 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~~ 78 (636)
.+.+.||+|+|||++|+.|++.+. .+..+++..|..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 589999999999999999999862 366777777753
No 426
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.56 E-value=0.34 Score=43.75 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..-|+|.|.+|+|||||.+.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999864
No 427
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.56 E-value=0.34 Score=43.51 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|++.|.+|+|||||.+.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 428
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.51 E-value=0.28 Score=44.25 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 429
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.49 E-value=0.4 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..-|+|.|.+|+|||||.+.|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3446889999999999999999864
No 430
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.42 E-value=0.34 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
No 431
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.38 E-value=0.26 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
...-|+|.|.+|+|||||.+.|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999753
No 432
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.37 E-value=0.39 Score=48.28 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=29.7
Q ss_pred CCeEEEEeCC-CCCcHHHHHHHHHHhCC----CcEEEEcccc
Q 006667 40 EDTLSFEKGP-SGAGKTVFTEKVLNFMP----SIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgIsGg-SGSGKTTLAkkLae~L~----~v~VIsmDdY 76 (636)
+.++|+|+|+ .|.||||+|..|+..+. .+.+|++|-.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4578888875 78999999999988762 5888999853
No 433
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.33 E-value=0.33 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
...|++.|++|+|||||.+.|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999753
No 434
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.27 E-value=0.25 Score=51.54 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+..-+.|.|++|+|||++++.+.+.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999887
No 435
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.27 E-value=0.37 Score=46.46 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
+.++++++|+.||||||.+-.++..+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999888876
No 436
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=87.25 E-value=0.41 Score=53.78 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHhC
Q 006667 44 SFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~L 65 (636)
|+|.|++|||||||.+.|...+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8999999999999999999865
No 437
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.25 E-value=0.33 Score=49.88 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
+++..+|..|+||||+|..|+..+- .+.+|++|-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 6778889999999999999987752 588999995
No 438
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.22 E-value=0.21 Score=60.97 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+...++|.|++||||||+++.|...+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 467999999999999999999998874
No 439
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=87.01 E-value=0.34 Score=49.39 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=29.1
Q ss_pred CCeEEEEeCC-CCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 40 EDTLSFEKGP-SGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGg-SGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
+.++|+|+|+ .|.||||+|..|+..+. .+.+|++|-
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3568888885 79999999999988762 578888885
No 440
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.99 E-value=0.38 Score=44.32 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 441
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.98 E-value=0.38 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 442
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=86.98 E-value=0.38 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae 63 (636)
.++|+|.|..|.||||||+.+..
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47888999999999999999996
No 443
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.95 E-value=0.37 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.4
Q ss_pred eEEEE--eCCCCCcHHHHHHHHHHhC
Q 006667 42 TLSFE--KGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 42 ~IIgI--sGgSGSGKTTLAkkLae~L 65 (636)
..+.| .|++|+||||+++.+.+.+
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 35555 9999999999999998875
No 444
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.95 E-value=0.28 Score=44.33 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 006667 43 LSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae 63 (636)
-|+|.|.+|+|||||.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378899999999999999875
No 445
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.94 E-value=0.38 Score=46.57 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=17.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKV 61 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkL 61 (636)
...++|.|++||||||+...+
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHH
Confidence 568999999999999866544
No 446
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.92 E-value=0.29 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L 65 (636)
-+.+.|++|+|||++|+.|++.+
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999986
No 447
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.84 E-value=0.41 Score=46.19 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=26.9
Q ss_pred eEEEEe-CCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 42 TLSFEK-GPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 42 ~IIgIs-GgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
++|+|+ +..|+||||+|..|+..+. .+.+|++|-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 466665 5788999999999988763 588888885
No 448
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.81 E-value=0.51 Score=49.21 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=30.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
.++++++|..|+||||+|..|+..+- .+.+|++|-
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 46888999999999999999998863 588999993
No 449
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.79 E-value=0.35 Score=51.82 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=28.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDd 75 (636)
..++.|+|++|+||||||..++... + .+.+++++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5699999999999999999988753 1 366777763
No 450
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.69 E-value=0.35 Score=57.66 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHH
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae 63 (636)
+..+++|.|++|||||||.+.|..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 466899999999999999999985
No 451
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=86.56 E-value=0.37 Score=46.44 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..-|+|.|.+|+|||||.+.|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 346889999999999999999864
No 452
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.56 E-value=0.42 Score=42.87 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35888999999999999999864
No 453
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=86.55 E-value=0.36 Score=51.82 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCCCCcchHHHHHHHHhhcCCCceEecCCCeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 12 PRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 12 ~~~~~~ll~~ql~~~~r~~~~~~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
|.--.+|-.+|-+.+..-... +.. ....+.|.|+.||||||++..+...+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~---i~~-~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKA---IKE-KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHH---HHS-SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHH---Hhc-CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344556777777765532100 000 12378899999999999999999876
No 454
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=86.52 E-value=0.22 Score=58.98 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=17.3
Q ss_pred CeEEEEeCCCCCcHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFT 58 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLA 58 (636)
+++++|+|.|||||||||
T Consensus 24 ~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 24 NRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TSEEEEEESTTSSSHHHH
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 789999999999999998
No 455
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=86.48 E-value=0.62 Score=46.53 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.7
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.++...|+|.|.++||||||.+.|...
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 344557999999999999999999864
No 456
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.47 E-value=0.54 Score=45.98 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=28.6
Q ss_pred CCeEEEE-eCCCCCcHHHHHHHHHHhCC---CcEEEEcccc
Q 006667 40 EDTLSFE-KGPSGAGKTVFTEKVLNFMP---SIAVITMDNY 76 (636)
Q Consensus 40 ~~~IIgI-sGgSGSGKTTLAkkLae~L~---~v~VIsmDdY 76 (636)
..++|+| +|..|+||||+|..|+..+. .+.+|++|-.
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3566766 56788999999999988763 5888999853
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.47 E-value=0.3 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae 63 (636)
.-|+|.|.+|+|||||.+.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4688999999999999999985
No 458
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.44 E-value=0.42 Score=43.69 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 459
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=86.42 E-value=0.38 Score=56.08 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..+++|+||.||||||+.+.|+-.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4679999999999999999999864
No 460
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=86.40 E-value=0.43 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.|...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998763
No 461
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.36 E-value=0.25 Score=60.15 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+..+++|.|++|||||||.+.|...++
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998764
No 462
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.33 E-value=0.36 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999999874
No 463
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=86.26 E-value=2.7 Score=44.83 Aligned_cols=28 Identities=25% Similarity=0.049 Sum_probs=23.6
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCCCc
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMPSI 68 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~~v 68 (636)
|...++|.|+|||| +|+.++|.+.+|+.
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~ 256 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDI 256 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTT
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCccc
Confidence 33577899999998 89999999999854
No 464
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=86.19 E-value=0.46 Score=49.45 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=29.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC---C-CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM---P-SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L---~-~v~VIsmDd 75 (636)
.+++..+|..|.||||+|..|+..+ + .+.+|++|-
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4577788999999999999998775 2 588999995
No 465
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=86.18 E-value=0.26 Score=58.70 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=17.6
Q ss_pred CeEEEEeCCCCCcHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTE 59 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAk 59 (636)
+++|+|+|.|||||||||-
T Consensus 46 ~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 46 DALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp SSEEEEEESTTSSHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 6899999999999999984
No 466
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=86.08 E-value=0.27 Score=58.51 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=17.5
Q ss_pred CeEEEEeCCCCCcHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTE 59 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAk 59 (636)
+++|.|+|.|||||||||-
T Consensus 44 ~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 44 GKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp TSEEEEEESTTSSHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 6899999999999999984
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.04 E-value=0.45 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.|...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36889999999999999999864
No 468
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=85.98 E-value=0.55 Score=43.31 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=22.0
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+.+.--|+|.|.+|+|||||.+.+...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 344457899999999999999988764
No 469
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.96 E-value=0.43 Score=44.03 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999998753
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.86 E-value=0.59 Score=43.03 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..-|+|.|.+|+|||||.+.|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999874
No 471
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.83 E-value=0.43 Score=55.41 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccccc
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDNYN 77 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDdY~ 77 (636)
..++|.|++|+|||++|+.|++.+. .+..+++..|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 4689999999999999999999862 24556666554
No 472
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.83 E-value=0.31 Score=59.43 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++||||||+++.|...++
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 56899999999999999999998764
No 473
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.81 E-value=0.4 Score=44.14 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
No 474
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=85.78 E-value=0.52 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..+++|.|++||||||+...|.-.++
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 57999999999999999999998764
No 475
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.71 E-value=0.41 Score=43.68 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.|...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35888999999999999999863
No 476
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=85.68 E-value=0.47 Score=43.52 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
No 477
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=85.67 E-value=0.2 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
+++|.|++|||||||.+.|.-.++
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999988875
No 478
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.65 E-value=0.57 Score=47.90 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
..-|.+.||+|+|||++|..|+..++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45699999999999999999999764
No 479
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.61 E-value=0.55 Score=42.55 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHH
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae 63 (636)
..-|+|.|.+|+|||||.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 44688999999999999999874
No 480
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.60 E-value=0.49 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
+..-|+|.|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998753
No 481
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=85.56 E-value=0.42 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..+++|+||+||||||+.+.|+-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 578999999999999999999864
No 482
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=85.45 E-value=0.57 Score=45.50 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=26.6
Q ss_pred eEEEE-eCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 42 TLSFE-KGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 42 ~IIgI-sGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
++|+| ++..|+||||+|-.|+..+. .+.+|++|-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 35555 67889999999999988762 578888885
No 483
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.44 E-value=0.49 Score=43.82 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHh
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
..-|+|.|.+|+|||||.+.|...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346888999999999999999864
No 484
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=85.43 E-value=0.32 Score=49.64 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 006667 43 LSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae 63 (636)
-|+|.|++|+|||||.+.|..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999864
No 485
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=85.40 E-value=0.42 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..++.|+||+|+||||++..|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998865
No 486
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=85.36 E-value=0.51 Score=43.02 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHH
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae 63 (636)
+..-|+|.|.+|+|||||.+.|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 455789999999999999999864
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.31 E-value=0.51 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.|...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999853
No 488
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.30 E-value=0.37 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHH
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVL 62 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLa 62 (636)
+..-|+|.|.+|+|||||.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34568889999999999998865
No 489
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.30 E-value=0.43 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|++.|.+|+|||||.+.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999864
No 490
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.24 E-value=0.52 Score=43.22 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.|...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999863
No 491
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.21 E-value=0.45 Score=51.62 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=28.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHhC----C-CcEEEEccc
Q 006667 40 EDTLSFEKGPSGAGKTVFTEKVLNFM----P-SIAVITMDN 75 (636)
Q Consensus 40 ~~~IIgIsGgSGSGKTTLAkkLae~L----~-~v~VIsmDd 75 (636)
+..++.|+|++|+||||||..++... + .+.+++++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 36699999999999999999998763 1 356666653
No 492
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.18 E-value=0.41 Score=48.94 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.9
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhCC
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFMP 66 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L~ 66 (636)
.+.+.+.+|.|++||||||+..+|.-.++
T Consensus 21 ~~~~g~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 21 GFSDRVTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp ECCSSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred ecCCCcEEEECCCCCcHHHHHHHHHHHhC
Confidence 34444999999999999999999986653
No 493
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.16 E-value=0.54 Score=49.65 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=19.5
Q ss_pred CCCCCcchHHHHHHHHhhcCCCceEecCCCeEEEEeCCCCCcHHHHHHHHHH
Q 006667 12 PRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGPSGAGKTVFTEKVLN 63 (636)
Q Consensus 12 ~~~~~~ll~~ql~~~~r~~~~~~~Iv~i~~~IIgIsGgSGSGKTTLAkkLae 63 (636)
..+|+--+..||+.-+++. -...-|+|-|.+||||||+++.+.-
T Consensus 12 ~~~~s~~Id~~l~~~~~~~--------~~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 12 AVERSKMIDRNLREDGERS--------ARLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp ---------------------------CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHh--------cCccEEEEECCCCCcHHHHHHHHHH
Confidence 3456666777776543332 1123578899999999999999953
No 494
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.12 E-value=0.54 Score=49.65 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.3
Q ss_pred cCCCeEEEEeCCCCCcHHHHHHHHHHhC-----C-CcEEEEccc
Q 006667 38 PIEDTLSFEKGPSGAGKTVFTEKVLNFM-----P-SIAVITMDN 75 (636)
Q Consensus 38 ~i~~~IIgIsGgSGSGKTTLAkkLae~L-----~-~v~VIsmDd 75 (636)
++++-++.|.|++||||||||..++... + .|..|+.+.
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3554478999999999999998876653 2 255565554
No 495
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=85.07 E-value=0.57 Score=48.32 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=29.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhCC----CcEEEEccc
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFMP----SIAVITMDN 75 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L~----~v~VIsmDd 75 (636)
.+++..+|..|.||||+|..|+..+. .+.+|++|-
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45777899999999999999998762 578899885
No 496
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.04 E-value=0.43 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHh
Q 006667 44 SFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 44 IgIsGgSGSGKTTLAkkLae~ 64 (636)
|+|.|++|||||||.+.|...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999865
No 497
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.99 E-value=0.53 Score=43.87 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHh
Q 006667 42 TLSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 42 ~IIgIsGgSGSGKTTLAkkLae~ 64 (636)
.-|+|.|.+|+|||||.+.+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999864
No 498
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.98 E-value=0.59 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHhC
Q 006667 41 DTLSFEKGPSGAGKTVFTEKVLNFM 65 (636)
Q Consensus 41 ~~IIgIsGgSGSGKTTLAkkLae~L 65 (636)
..-+.|.|++|+||||+|+.|+..+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999875
No 499
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.95 E-value=0.46 Score=43.60 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.|...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5788999999999999999875
No 500
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.92 E-value=0.55 Score=43.08 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHh
Q 006667 43 LSFEKGPSGAGKTVFTEKVLNF 64 (636)
Q Consensus 43 IIgIsGgSGSGKTTLAkkLae~ 64 (636)
-|+|.|.+|+|||||.+.+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5888999999999999999874
Done!