BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006669
(636 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLR 314
P F CPISLELM+DPVIV+TGQTYERS IQ+W+D G+ TCPK+Q+ L H LTPNYVL+
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 315 SLISQWCTMHNIE 327
SLI+ WC + IE
Sbjct: 66 SLIALWCESNGIE 78
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 4/220 (1%)
Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
+E LV+ L+S E ++ A ++ ++ I DAG + VLV LLT+ D Q+
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 414 AVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSL-SLLDENKII 471
A A+ N++ + I+ AG + +V++L + E ++ AA L ++ S DE
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKMLTDSR 530
I +G + LV LL + + +K+AA AL N+ +A V AG + L+K+LT +
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 183
Query: 531 NCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRT 569
+ + EA L+ +AS P + I AIV A + VL LL +
Sbjct: 184 SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 4/234 (1%)
Query: 399 LVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAA 457
LV LLT+ D TQ+ A + ++ + I+ AG + +V++L + E ++ AA
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 458 TLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VR 515
L ++ S DE I +G + LV LL + + +K+AA AL N+ +A V
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126
Query: 516 AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRN 574
AG + L+K+LT + + + EA L+ +AS P+ I AIV A + VL+ LL +
Sbjct: 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 186
Query: 575 KENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
++ AA L ++ T + I G V L +L S +++A LE+++
Sbjct: 187 QKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D +E LV+ L+S E ++ A + +++ + I DAG + VLV LLT+ D
Sbjct: 42 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE 101
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSL-SLLDE 467
Q+ A A+ N++ + I+ AG + +V++L + E ++ AA L ++ S DE
Sbjct: 102 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161
Query: 468 NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKML 526
I +G + LV LL + + +K+AA AL N+ + +A V AG + L K+L
Sbjct: 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221
Query: 527 TDSRNCMVDEA 537
T + + + EA
Sbjct: 222 TSTDSEVQKEA 232
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 475 SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKMLTDSRNCM 533
+G + LV LL + + +K+AA AL N+ +A V AG + L+K+LT + + +
Sbjct: 43 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 102
Query: 534 VDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTEN 592
EA L+ +AS P+ I AIV A + VL+ LL + ++ AA L ++ E
Sbjct: 103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162
Query: 593 LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631
+ I G V L +L S +++A L ++ P
Sbjct: 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 478 IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKMLTDSRNCMVDE 536
+ LV LL + + +K+AA L + + +A V AG + L+K+LT + + + E
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 537 ALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC 595
A L+ +AS P+ I AIV A + VL+ LL + ++ AA L ++ E +
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 596 ISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631
I G V L +L S +++A L ++ P
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 125/239 (52%), Gaps = 8/239 (3%)
Query: 396 IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL--IMLAGAIPSIVQILRAGSMEARE 453
+P + L +DD M ++ + T + + + N+ + ++ AGA+P++VQ+L + + + +
Sbjct: 14 LPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 454 NAAATLFSLSLLDENKI--IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511
A L +++ +I +I A GA+PALV LL + + + ++A AL N+ +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 512 RAV-RAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRT 569
+AV AG + AL+++L+ ++ EAL LS +AS +I A++ A +P L+ LL +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
+ + A L ++ E + GA+ L +L E+ +++A LE L+
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 117/212 (55%), Gaps = 6/212 (2%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVT 416
+ ++L+S ++E+ +A + + + + DAGA+P LV LL++ + + A+
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 417 AILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI--IIG 473
A+ N++ N + ++ AGA+P++VQ+L + + + + A L +++ +I +I
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDSRNC 532
A GA+PALV LL + + + ++A AL N+ + +AV AG + AL+++L+
Sbjct: 137 A-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 195
Query: 533 MVDEALTILSVLASNP-EAKIAIVKASTIPVL 563
++ EAL LS +AS E K A+ +A + L
Sbjct: 196 ILQEALWALSNIASGGNEQKQAVKEAGALEKL 227
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ALV+ LSS + + + A+ + +++ + + DAGA+P LV LL++ +
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
+ A+ A+ N++ N + ++ AGA+P++VQ+L + + + + A L +++
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 469 KI--IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKM 525
+I +I A GA+PALV LL + + + ++A AL N+ + +AV+ AG + L ++
Sbjct: 172 QIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230
Query: 526 LTDSRNCMVDEALTILSVLASN 547
+ + EA L L S+
Sbjct: 231 QSHENEKIQKEAQEALEKLQSH 252
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 7/197 (3%)
Query: 437 IPSIVQILRAGSMEARENAAAT-LFSLSLLDENKIIIGA--SGAIPALVDLLQNGSTRGR 493
+P + Q L + M +E +AT FS L D N+ I +GA+PALV LL + + +
Sbjct: 14 LPQMTQQLNSDDM--QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 494 KDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI 552
++A AL N+ + +AV AG + AL+++L+ ++ EAL LS +AS +I
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 553 -AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS 611
A++ A +P L+ LL + + + A L ++ E + GA+ L +L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 612 GTERAKRKATSLLEHLR 628
E+ +++A LE L+
Sbjct: 192 ENEKIQKEAQEALEKLQ 208
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 104/195 (53%), Gaps = 5/195 (2%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVT 416
+ ++L+S ++E+ +A + + + + DAGA+P LV LL++ + + A+
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 417 AILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI--IIG 473
A+ N++ N + ++ AGA+P++VQ+L + + + + A L +++ +I +I
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNC 532
A GA+PALV LL + + + ++A AL N+ + +AV+ AG + L ++ +
Sbjct: 137 A-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195
Query: 533 MVDEALTILSVLASN 547
+ EA L L S+
Sbjct: 196 IQKEAQEALEKLQSH 210
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ALV+ LSS + + + A+ + +++ + + DAGA+P LV LL++ +
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL--- 465
+ A+ A+ N++ N + ++ AGA+P++VQ+L + + + + A L++LS +
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNIASG 168
Query: 466 -DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY 506
+E K + +GA+ L L + + + +K+A AL L +
Sbjct: 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 107/195 (54%), Gaps = 5/195 (2%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVT 416
+V++L+S +E ++A+ ++ ++ + + DAGA+P LV LL++ + + A+
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 417 AILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI--IIG 473
A+ N++ N + ++ AGA+P++VQ+L + + + + A L +++ +I +I
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNC 532
A GA+PALV LL + + + ++A AL N+ + +AV+ AG + L ++ +
Sbjct: 137 A-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195
Query: 533 MVDEALTILSVLASN 547
+ EA L L S+
Sbjct: 196 IQKEAQEALEKLQSH 210
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 475 SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDSRNCM 533
+GA+PALV LL + + + ++A AL N+ + +AV AG + AL+++L+ +
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 534 VDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTEN 592
+ EAL LS +AS +I A++ A +P L+ LL + + + A L ++ E
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 593 LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
+ GA+ L +L E+ +++A LE L+
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ALV+ LSS + + + A+ + +++ + + DAGA+P LV LL++ +
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL--- 465
+ A+ A+ N++ N + ++ AGA+P++VQ+L + + + + A L++LS +
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNIASG 168
Query: 466 -DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY 506
+E K + +GA+ L L + + + +K+A AL L +
Sbjct: 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 4/178 (2%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVT 416
+V++L+S +E ++A+ ++ ++ + + DAGA+P LV LL++ + + A+
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 417 AILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI--IIG 473
A+ N++ N + ++ AGA+P++VQ+L + + + + A L +++ +I +I
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRN 531
A GA+PALV LL + + + ++A AL N+ + +AV+ L+ L S N
Sbjct: 137 A-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ALV+ LSS + + + A+ + +++ + + DAGA+P LV LL++ +
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL--- 465
+ A+ A+ N++ N + ++ AGA+P++VQ+L + + + + A L++LS +
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNIASG 168
Query: 466 -DENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+E K + +GA PAL L + + + +K+A AL
Sbjct: 169 GNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLP 572
+ AG + AL+++L+ ++ EAL LS +AS +I A++ A +P L+ LL +
Sbjct: 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110
Query: 573 RNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKA 620
+ + A L ++ E + + GA+ L +L S E+ ++A
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 134/307 (43%), Gaps = 27/307 (8%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 176 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSG 234
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LVN+L + D V+ HA+T + NL ++ E K + LAG + +V +L +++
Sbjct: 235 GIPALVNMLGSPVDSVLF--HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 293 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVL 566
NK V AG + AL LTD +V L L L+ A K + L+
Sbjct: 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD------AATKQEGMEGLLGT 403
Query: 567 LRTGLPRNKEN----AAAILLSLCKRDTENLACISRLGAVIPL--TELTKSGTERAKRKA 620
L L + N AA IL +L + +N + ++G + L T L E A
Sbjct: 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463
Query: 621 TSLLEHL 627
L HL
Sbjct: 464 ICALRHL 470
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 29/276 (10%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463
Query: 415 VTAILNLSIYENN----KGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ + + + L +P +V++L S A L +L+L N
Sbjct: 464 ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 524 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------- 563
Query: 530 RNCMVDEALT-ILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588
R + EA T L +LA + +I I +TIP+ + LL + + + AA +L L +
Sbjct: 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ- 622
Query: 589 DTENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
D E I GA PLTEL S E A ++L
Sbjct: 623 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 106/267 (39%), Gaps = 24/267 (8%)
Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQ 411
AI L + L+ A + LSK+ I+ + +V + T+DV T
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210
Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KI 470
+ NLS + I +G IP++V +L + +A TL +L L E K+
Sbjct: 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270
Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV--RAGIISALLKML-- 526
+ +G + +V LL + + T + Y + + + +G AL+ ++
Sbjct: 271 AVRLAGGLQKMVALLNKTNVKFLA-ITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329
Query: 527 --------TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENA 578
T SR L +LSV +SN K AIV+A + L + L R +N
Sbjct: 330 YTYEKLLWTTSR------VLKVLSVCSSN---KPAIVEAGGMQALGLHLTDPSQRLVQNC 380
Query: 579 AAILLSLCKRDTENLACISRLGAVIPL 605
L +L T+ LG ++ L
Sbjct: 381 LWTLRNLSDAATKQEGMEGLLGTLVQL 407
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
++AL + L+S S + + +R+LS +T + + +LVN L+ DDV
Sbjct: 230 GMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGL---ESVLKILVNQLSVDDVNVLT 286
Query: 413 HAVTAILNLSIYEN-NKGLIMLAGAIPSIVQ-ILRAGSME-ARENAAATLFSLSL----- 464
A + NL+ + NK L+ + +++ ILRAG + E A L L+
Sbjct: 287 CATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEA 346
Query: 465 -LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALF-NLCIYMGNKGRAVRAGIISAL 522
+ +N + + IPA+V LL + A L NL + N A +I L
Sbjct: 347 EMAQNSVRLNY--GIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRL 404
Query: 523 LKMLTDSRNC---------------------MVDEALTILSVLASNPEAKIAIVKASTIP 561
+++L + +V+ L +LA +P ++ I + +TIP
Sbjct: 405 VQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIP 464
Query: 562 VLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKAT 621
+ + LL + + + AA +L L + D E I GA PL EL S E A
Sbjct: 465 LFVQLLYSSVENIQRVAAGVLCELAQ-DKEAADAIDAEGASAPLMELLHSRNEGTATYAA 523
Query: 622 SLL 624
++L
Sbjct: 524 AVL 526
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 16/211 (7%)
Query: 335 GKIKKSDGSFRDVSGDVVAIEALVRKLSSRS-VEERRAAVAEIRSLSKRSTDNRIIIADA 393
++ K + S R + G + A+VR + + S ++ R + + +LS + + I +
Sbjct: 44 NQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHR-EGLLAIFKS 102
Query: 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEAR 452
G IP LV +L++ +A+T + NL +Y E K + LA + +V +L + +
Sbjct: 103 GGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKF- 161
Query: 453 ENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIYM 507
A T L LL E+K+II A+G ALV +++N S + + L +
Sbjct: 162 --LAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCP 219
Query: 508 GNKGRAVRAGIISALLKMLTDS-----RNCM 533
NK V AG + AL K LT + +NC+
Sbjct: 220 SNKPAIVEAGGMQALGKHLTSNSPRLVQNCL 250
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ++ L + SVE + A+ + +++ STD R + A+ ++ L ++
Sbjct: 84 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 143
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
A + NL + + +++ A+P++ +++ + E +A + LS +
Sbjct: 144 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 203
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
I IP LV+LL + ST + A A+ N I GN + + AG++ AL
Sbjct: 204 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 261
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
+L+ + + EA TI ++ A N E A++ A+ IP L+ LL + K+ A +
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 321
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
+ + I L G + PL +L + R LE++ K+
Sbjct: 322 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 371
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 129/316 (40%), Gaps = 56/316 (17%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDV-MTQEHA 414
+ ++L+S ++E+ +A + R + R I ++ AG +P LV + + M Q A
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 64
Query: 415 VTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS------------ 461
A+ N+ S +++ A A+P +Q+L GS+E +E A L +
Sbjct: 65 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 124
Query: 462 ---------LSLLDENK--IIIGA--------------------SGAIPALVDLLQNGST 490
L L + NK +I A S A+P L L+ + T
Sbjct: 125 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 184
Query: 491 RGRKDAATALFNLCIYMGNKGRAVRAGIISA-----LLKMLTDSRNCMVDEAL-TILSVL 544
DA A+ Y+ + + +I L+++L+ + AL + +++
Sbjct: 185 ETLVDACWAIS----YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 545 ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604
N ++ A +P L +LL + K+ A + ++ +TE + + + P
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 300
Query: 605 LTELTKSGTERAKRKA 620
L +L + ++ K++A
Sbjct: 301 LVKLLEVAEDKTKKEA 316
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ++ L + SVE + A+ + +++ STD R + A+ ++ L ++
Sbjct: 85 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 144
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
A + NL + + +++ A+P++ +++ + E +A + LS +
Sbjct: 145 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 204
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
I IP LV+LL + ST + A A+ N I GN + + AG++ AL
Sbjct: 205 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 262
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
+L+ + + EA TI ++ A N E A++ A+ IP L+ LL + K+ A +
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 322
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
+ + I L G + PL +L + R LE++ K+
Sbjct: 323 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 372
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 129/316 (40%), Gaps = 56/316 (17%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDV-MTQEHA 414
+ ++L+S ++E+ +A + R + R I ++ AG +P LV + + M Q A
Sbjct: 6 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 65
Query: 415 VTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS------------ 461
A+ N+ S +++ A A+P +Q+L GS+E +E A L +
Sbjct: 66 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 125
Query: 462 ---------LSLLDENK--IIIGA--------------------SGAIPALVDLLQNGST 490
L L + NK +I A S A+P L L+ + T
Sbjct: 126 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 185
Query: 491 RGRKDAATALFNLCIYMGNKGRAVRAGIISA-----LLKMLTDSRNCMVDEAL-TILSVL 544
DA A+ Y+ + + +I L+++L+ + AL + +++
Sbjct: 186 ETLVDACWAIS----YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Query: 545 ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604
N ++ A +P L +LL + K+ A + ++ +TE + + + P
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 301
Query: 605 LTELTKSGTERAKRKA 620
L +L + ++ K++A
Sbjct: 302 LVKLLEVAEDKTKKEA 317
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ++ L + SVE + A+ + +++ STD R + A+ ++ L ++
Sbjct: 84 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 143
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
A + NL + + +++ A+P++ +++ + E +A + LS +
Sbjct: 144 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 203
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
I IP LV+LL + ST + A A+ N I GN + + AG++ AL
Sbjct: 204 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 261
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
+L+ + + EA TI ++ A N E A++ A+ IP L+ LL + K+ A +
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 321
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
+ + I L G + PL +L + R LE++ K+
Sbjct: 322 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 371
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 129/316 (40%), Gaps = 56/316 (17%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDV-MTQEHA 414
+ ++L+S ++E+ +A + R + R I ++ AG +P LV + + M Q A
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 64
Query: 415 VTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS------------ 461
A+ N+ S +++ A A+P +Q+L GS+E +E A L +
Sbjct: 65 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 124
Query: 462 ---------LSLLDENK--IIIGA--------------------SGAIPALVDLLQNGST 490
L L + NK +I A S A+P L L+ + T
Sbjct: 125 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 184
Query: 491 RGRKDAATALFNLCIYMGNKGRAVRAGIISA-----LLKMLTDSRNCMVDEAL-TILSVL 544
DA A+ Y+ + + +I L+++L+ + AL + +++
Sbjct: 185 ETLVDACWAIS----YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 545 ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604
N ++ A +P L +LL + K+ A + ++ +TE + + + P
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 300
Query: 605 LTELTKSGTERAKRKA 620
L +L + ++ K++A
Sbjct: 301 LVKLLEVAEDKTKKEA 316
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ++ L + SVE + A+ + +++ STD R + A+ ++ L ++
Sbjct: 85 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 144
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
A + NL + + +++ A+P++ +++ + E +A + LS +
Sbjct: 145 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 204
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
I IP LV+LL + ST + A A+ N I GN + + AG++ AL
Sbjct: 205 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 262
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
+L+ + + EA TI ++ A N E A++ A+ IP L+ LL + K+ A +
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 322
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
+ + I L G + PL +L + R LE++ K+
Sbjct: 323 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 372
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 129/316 (40%), Gaps = 56/316 (17%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDV-MTQEHA 414
+ ++L+S ++E+ +A + R + R I ++ AG +P LV + + M Q A
Sbjct: 6 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 65
Query: 415 VTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS------------ 461
A+ N+ S +++ A A+P +Q+L GS+E +E A L +
Sbjct: 66 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 125
Query: 462 ---------LSLLDENK--IIIGA--------------------SGAIPALVDLLQNGST 490
L L + NK +I A S A+P L L+ + T
Sbjct: 126 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 185
Query: 491 RGRKDAATALFNLCIYMGNKGRAVRAGIISA-----LLKMLTDSRNCMVDEAL-TILSVL 544
DA A+ Y+ + + +I L+++L+ + AL + +++
Sbjct: 186 ETLVDACWAIS----YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Query: 545 ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604
N ++ A +P L +LL + K+ A + ++ +TE + + + P
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 301
Query: 605 LTELTKSGTERAKRKA 620
L +L + ++ K++A
Sbjct: 302 LVKLLEVAEDKTKKEA 317
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ++ L + SVE + A+ + +++ STD R + A+ ++ L ++
Sbjct: 83 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 142
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
A + NL + + +++ A+P++ +++ + E +A + LS +
Sbjct: 143 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 202
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
I IP LV+LL + ST + A A+ N I GN + + AG++ AL
Sbjct: 203 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 260
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
+L+ + + EA TI ++ A N E A++ A+ IP L+ LL + K+ A +
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 320
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
+ + I L G + PL +L + R LE++ K+
Sbjct: 321 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 370
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 128/316 (40%), Gaps = 56/316 (17%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDV-MTQEHA 414
+ ++L+S ++E+ +A + R + R I ++ AG +P LV + + M Q A
Sbjct: 4 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 63
Query: 415 VTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS------------ 461
A+ N+ S +++ A A+P +Q+L GS+E +E A L +
Sbjct: 64 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 123
Query: 462 ---------LSLLDENK--IIIGA--------------------SGAIPALVDLLQNGST 490
L L + NK +I A S A+P L L+ + T
Sbjct: 124 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 183
Query: 491 RGRKDAATALFNLCIYMGNKGRAVRAGIISA-----LLKMLTDSRNCMVDEAL-TILSVL 544
DA A+ Y+ + + +I L+++L+ + AL + +++
Sbjct: 184 ETLVDACWAIS----YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 545 ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604
N ++ A +P L +LL + K+ A + ++ +TE + + + P
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 299
Query: 605 LTELTKSGTERAKRKA 620
L +L + + K++A
Sbjct: 300 LVKLLEVAEYKTKKEA 315
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ++ L + SVE + A+ + +++ STD R + A+ ++ L ++
Sbjct: 83 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 142
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
A + NL + + +++ A+P++ +++ + E +A + LS +
Sbjct: 143 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 202
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
I IP LV+LL + ST + A A+ N I GN + + AG++ AL
Sbjct: 203 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 260
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
+L+ + + EA TI ++ A N E A++ A+ IP L+ LL + K+ A +
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 320
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
+ + I L G + PL +L + R LE++ K+
Sbjct: 321 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKM 370
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 128/316 (40%), Gaps = 56/316 (17%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDV-MTQEHA 414
+ ++L+S ++E+ +A + R + R I ++ AG +P LV + + M Q A
Sbjct: 4 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 63
Query: 415 VTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS------------ 461
A+ N+ S +++ A A+P +Q+L GS+E +E A L +
Sbjct: 64 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 123
Query: 462 ---------LSLLDENK--IIIGA--------------------SGAIPALVDLLQNGST 490
L L + NK +I A S A+P L L+ + T
Sbjct: 124 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 183
Query: 491 RGRKDAATALFNLCIYMGNKGRAVRAGIISA-----LLKMLTDSRNCMVDEAL-TILSVL 544
DA A+ Y+ + + +I L+++L+ + AL + +++
Sbjct: 184 ETLVDACWAIS----YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 545 ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604
N ++ A +P L +LL + K+ A + ++ +TE + + + P
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 299
Query: 605 LTELTKSGTERAKRKA 620
L +L + + K++A
Sbjct: 300 LVKLLEVAEYKTKKEA 315
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
D A+ ++ L + SVE + A+ + +++ STD R + A+ ++ L ++
Sbjct: 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 230
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
A + NL + + +++ A+P++ +++ + E +A + LS +
Sbjct: 231 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 290
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
I IP LV+LL + ST + A A+ N I GN + + AG++ AL
Sbjct: 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 348
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
+L+ + + EA TI ++ A N E A++ A+ IP L+ LL + K+ A +
Sbjct: 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
+ + I L G + PL +L + R LE++ K+
Sbjct: 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 128/316 (40%), Gaps = 56/316 (17%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDV-MTQEHA 414
+ ++L+S ++E+ +A + R + R I ++ AG +P LV + + M Q A
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151
Query: 415 VTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS------------ 461
A+ N+ S +++ A A+P +Q+L GS+E +E A L +
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211
Query: 462 ---------LSLLDENK--IIIGA--------------------SGAIPALVDLLQNGST 490
L L + NK +I A S A+P L L+ + T
Sbjct: 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 271
Query: 491 RGRKDAATALFNLCIYMGNKGRAVRAGIISA-----LLKMLTDSRNCMVDEAL-TILSVL 544
DA A+ Y+ + + +I L+++L+ + AL + +++
Sbjct: 272 ETLVDACWAIS----YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327
Query: 545 ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604
N ++ A +P L +LL + K+ A + ++ +TE + + + P
Sbjct: 328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 387
Query: 605 LTELTKSGTERAKRKA 620
L +L + + K++A
Sbjct: 388 LVKLLEVAEYKTKKEA 403
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 27/307 (8%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 40 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 98
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 99 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 156
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 157 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVL 566
NK V AG + AL LTD +V L L L+ A K + L+
Sbjct: 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD------AATKQEGMEGLLGT 267
Query: 567 LRTGLPRNKEN----AAAILLSLCKRDTENLACISRLGAVIPL--TELTKSGTERAKRKA 620
L L + N AA IL +L + +N + ++G + L T L E A
Sbjct: 268 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327
Query: 621 TSLLEHL 627
L HL
Sbjct: 328 ICALRHL 334
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 268 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 387
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 388 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 428
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 487
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQ 411
AI L + L+ A + LSK+ I+ + +V + T+DV T
Sbjct: 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KI 470
+ NLS + I +G IP++V++L + A TL +L L E K+
Sbjct: 75 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134
Query: 471 IIGASGAIPALVDLL 485
+ +G + +V LL
Sbjct: 135 AVRLAGGLQKMVALL 149
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 46 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 104
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 105 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 162
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 163 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 219
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 220 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 258
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 274 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 333
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 334 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 393
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 394 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 434
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 435 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 493
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 494 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 528
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430
A + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 40 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 99
Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGS 489
I +G IP++V++L + A TL +L L E K+ + +G + +V LL +
Sbjct: 100 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 159
Query: 490 TR 491
+
Sbjct: 160 VK 161
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 44 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 102
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 103 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 160
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 161 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 217
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 218 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 256
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 272 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 331
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 332 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 391
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 392 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 432
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 433 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 491
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 492 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 526
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNK 428
+AAV + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 37 KAAVM-VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 95
Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQN 487
I +G IP++V++L + A TL +L L E K+ + +G + +V LL
Sbjct: 96 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 155
Query: 488 GSTR 491
+ +
Sbjct: 156 TNVK 159
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 30 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 88
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 89 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 146
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 147 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 203
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 204 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 242
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 258 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 317
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 318 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 377
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 378 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 418
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 419 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 477
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 478 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 512
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430
A + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 24 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 83
Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGS 489
I +G IP++V++L + A TL +L L E K+ + +G + +V LL +
Sbjct: 84 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 143
Query: 490 TR 491
+
Sbjct: 144 VK 145
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 28 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 86
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 87 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 144
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 145 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 201
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 202 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 240
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 256 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 315
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 316 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 375
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 376 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 416
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 417 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 475
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 476 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 510
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430
A + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 22 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 81
Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGS 489
I +G IP++V++L + A TL +L L E K+ + +G + +V LL +
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 141
Query: 490 TR 491
+
Sbjct: 142 VK 143
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 28 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 86
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 87 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 144
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 145 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 201
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 202 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 240
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 256 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 315
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 316 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 375
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 376 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 416
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 417 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 475
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 476 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 510
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430
A + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 22 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 81
Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLL 485
I +G IP++V++L + A TL +L L E K+ + +G + +V LL
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 137
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 32 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 90
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 91 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 148
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 149 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 205
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 206 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 244
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 260 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 319
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 320 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 379
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 380 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 420
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 421 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 479
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 480 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 514
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430
A + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 26 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 85
Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGS 489
I +G IP++V++L + A TL +L L E K+ + +G + +V LL +
Sbjct: 86 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 145
Query: 490 TR 491
+
Sbjct: 146 VK 147
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 41 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 99
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 100 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 157
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 158 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 214
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 215 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 253
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 269 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 328
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 329 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 388
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 389 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 429
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 430 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 488
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 489 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 523
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNK 428
+AAV + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 34 KAAVM-VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 92
Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQN 487
I +G IP++V++L + A TL +L L E K+ + +G + +V LL
Sbjct: 93 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 152
Query: 488 GSTR 491
+ +
Sbjct: 153 TNVK 156
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 41 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 99
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 100 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 157
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 158 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 214
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 215 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 253
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 269 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 328
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 329 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 388
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 389 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 429
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 430 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 488
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 489 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 523
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNK 428
+AAV + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 34 KAAVM-VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 92
Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQN 487
I +G IP++V++L + A TL +L L E K+ + +G + +V LL
Sbjct: 93 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 152
Query: 488 GSTR 491
+ +
Sbjct: 153 TNVK 156
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 47 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 105
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 106 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 163
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 164 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 220
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 221 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 259
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 275 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 334
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 335 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 394
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 395 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 435
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 436 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 494
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 495 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 529
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNK 428
+AAV + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 40 KAAVM-VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 98
Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQN 487
I +G IP++V++L + A TL +L L E K+ + +G + +V LL
Sbjct: 99 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 158
Query: 488 GSTR 491
+ +
Sbjct: 159 TNVK 162
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 45 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 103
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 104 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 161
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 162 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 218
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 219 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 257
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 273 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 332
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 333 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 392
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 393 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 433
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 434 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 492
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 493 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 527
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430
A + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 39 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 98
Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGS 489
I +G IP++V++L + A TL +L L E K+ + +G + +V LL +
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 158
Query: 490 TR 491
+
Sbjct: 159 VK 160
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 45 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 103
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 104 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 161
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 162 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 218
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 219 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 257
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 273 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 332
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 333 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 392
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 393 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 433
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 434 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 492
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 493 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 527
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430
A + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 39 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 98
Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGS 489
I +G IP++V++L + A TL +L L E K+ + +G + +V LL +
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 158
Query: 490 TR 491
+
Sbjct: 159 VK 160
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
++ K + S + + A+VR + ++ VE R + +LS + + I +G
Sbjct: 43 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 101
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
IP LV +L + D V+ +A+T + NL ++ E K + LAG + +V +L +++
Sbjct: 102 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 159
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
A T L +L E+K+II ASG ALV++++ + + + L +
Sbjct: 160 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
NK V AG + AL LTD +V L L L+
Sbjct: 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N++++ G I LV L D E A
Sbjct: 271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 390
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 391 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 431
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 490
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430
A + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 37 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96
Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGS 489
I +G IP++V++L + A TL +L L E K+ + +G + +V LL +
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 156
Query: 490 TR 491
+
Sbjct: 157 VK 158
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 254 IPADFLC-PISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
IP D+LC IS ELMR+P I +G TY+R I+ + P T+ L L PN
Sbjct: 2 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 60
Query: 313 LRSLI 317
++ +I
Sbjct: 61 MKEVI 65
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 254 IPADFLC-PISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
IP D+LC IS ELMR+P I +G TY+R I+ + P T+ L L PN
Sbjct: 205 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 263
Query: 313 LRSLI 317
++ +I
Sbjct: 264 MKEVI 268
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 254 IPADFLC-PISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
IP D+LC IS ELMR+P I +G TY+R I+ + P T+ L L PN
Sbjct: 103 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 161
Query: 313 LRSLI 317
++ +I
Sbjct: 162 MKEVI 166
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 15/201 (7%)
Query: 354 IEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMT 410
+ A+VR ++ VE R + +LS + + I +G IP LV L + D V+
Sbjct: 3 VSAIVRTXQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKXLGSPVDSVLF 61
Query: 411 QEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL---- 465
+A+T + NL ++ E K + LAG + V +L +++ A T L +L
Sbjct: 62 --YAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVKF---LAITTDCLQILAYGN 116
Query: 466 DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIYMGNKGRAVRAGIISALLK 524
E+K+II ASG ALV++ + + + + L + NK V AG AL
Sbjct: 117 QESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGXQALGL 176
Query: 525 MLTDSRNCMVDEALTILSVLA 545
LTD +V L L L+
Sbjct: 177 HLTDPSQRLVQNCLWTLRNLS 197
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 109/275 (39%), Gaps = 27/275 (9%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVMTQEHA 414
LV+ L S + A + +L+ + N+ + G I LV L D E A
Sbjct: 213 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPA 272
Query: 415 VTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENK 469
+ A+ +L+ E + + L +P +V++L S A L +L+L N
Sbjct: 273 ICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 332
Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
+ GAIP LV LL R +D MG + G+
Sbjct: 333 APLREQGAIPRLVQLL----VRAHQDTQRR-----TSMGGTQQQFVEGV----------R 373
Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
+V+ L +LA + +I I +TIP+ + LL + + + AA +L L + D
Sbjct: 374 XEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 432
Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624
E I GA PLTEL S E A ++L
Sbjct: 433 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 467
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNL----SIYENNKGLIMLAGAIPSIVQILR 445
+ D GAIP ++LL + E AV A+ N+ S++ + L++ GA+ ++ +L
Sbjct: 90 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF---RDLVIKYGAVDPLLALLA 146
Query: 446 AGSMEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAA 497
M + A L ++LS L NK I +P LV LL + D
Sbjct: 147 VPDMSSL--ACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTC 204
Query: 498 TALFNLCIYMGNK-GRAVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIV 555
A+ L + G V+ G++ L+K+L S +V AL I +++ E ++
Sbjct: 205 WAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVI 264
Query: 556 KASTIPVLIVLL 567
A + V LL
Sbjct: 265 DAGALAVFPSLL 276
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I FRD+ A++ L V +SS + R + +
Sbjct: 109 HISEQAV-WALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSN 167
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + I A +P LV LL DD AI L+ N + G+++ G +
Sbjct: 168 LCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVV 227
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE ++ +GA+ LL N T +K+A
Sbjct: 228 PQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEA 287
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 288 TWTMSNITAGRQDQIQQVVNHGLVPFLVSVLS 319
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 48 IRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 107
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GAV PL L
Sbjct: 108 AHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLAL 144
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
+ LV+ L + + A+ I ++ + + ++ DAGA+ V +LLT Q+
Sbjct: 227 VPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKE 286
Query: 414 AVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENA--AATLFSLSLLDENKI 470
A + N++ ++ ++ G +P +V +L + ++ A A T ++ E +
Sbjct: 287 ATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIV 346
Query: 471 IIGASGAIPALVDLLQNGSTR 491
+ G I L++LL T+
Sbjct: 347 YLVHCGIIEPLMNLLTAKDTK 367
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 254 IPADFLC-PISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
IP D+LC IS ELM +P I +G TY+R I+ + P T+ L L PN
Sbjct: 10 IP-DYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 68
Query: 313 LRSLI 317
++ +I
Sbjct: 69 MKEVI 73
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 383 STDNRIIIADAGA-IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL--IMLAGAIPS 439
+ D+ +AD G+ +P ++ + +DD Q A T L E + + ++ +G +P
Sbjct: 24 TDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 83
Query: 440 IVQIL-RAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAA 497
VQ L R + + AA L ++ S EN ++ GA+P V LL + S R+ A
Sbjct: 84 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 143
Query: 498 TALFNL 503
AL N+
Sbjct: 144 WALGNV 149
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
A+ AL R + S E A + LS + D + +AG P LV LL
Sbjct: 207 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 266
Query: 413 HAVTAILNLSIYENNKG-LIMLAGAIPSIVQILRAGSMEA-RENAAATLFSLSLLDENKI 470
A+ + N+ ++ + I+ A+P ++ +L ++ ++ A T+ +++ ++++I
Sbjct: 267 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQI 326
Query: 471 --IIGASGAIPALVDLLQNGSTRGRKDAATALFN 502
+I A G I LV+LLQ +K+AA A+ N
Sbjct: 327 QAVINA-GIIGPLVNLLQTAEFDIKKEAAWAISN 359
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 120/302 (39%), Gaps = 55/302 (18%)
Query: 380 SKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIP 438
S S RI+I AGA+P+ + LL+++ QE AV A+ N++ + ++ +P
Sbjct: 91 SGNSLQTRIVI-QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILP 149
Query: 439 SIVQIL-RAGSMEARENAAATLFSLSLLDENKI----IIGASGAIPALVDLLQNGSTRGR 493
++Q+ + + NA +++LS L K S + L LL T
Sbjct: 150 PLLQLFSKQNRLTMTRNA---VWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVL 206
Query: 494 KDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDSRNCMVDEAL-------------- 538
DA AL L +K +AV AG+ L+++L + +V AL
Sbjct: 207 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 266
Query: 539 -----------------------------TILSVLASNPEAKIAIVKASTIPVLIVLLRT 569
TI ++ A N ++ A+ P LI +L+T
Sbjct: 267 QVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT 326
Query: 570 GLPRN-KENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
R KE A AI + E + + LG + PL +L + + A + LE++
Sbjct: 327 AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 386
Query: 629 KL 630
+L
Sbjct: 387 RL 388
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIP 438
LS D + DAG LV LL +D A+ A+ N+ ++ + ++L +
Sbjct: 216 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 275
Query: 439 SIVQILRAGSMEA-RENAAATLFSLSLLDENKI--IIGASGAIPALVDLLQNGSTRGRKD 495
+ L + E+ ++ A T+ +++ + +I +I A+ PAL+ +LQ R RK+
Sbjct: 276 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN-IFPALISILQTAEFRTRKE 334
Query: 496 AATALFN 502
AA A+ N
Sbjct: 335 AAWAITN 341
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL--IMLAGAIPSIVQIL-RAGSMEA 451
++P ++ + +DD Q A T L E + + ++ +G +P VQ L R +
Sbjct: 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 134
Query: 452 RENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNL 503
+ AA L ++ S EN ++ GA+P V LL + S R+ A AL N+
Sbjct: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNV 187
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
A+ AL R + S E A + LS + D + +AG P LV LL
Sbjct: 245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 304
Query: 413 HAVTAILNLSIYENNKG-LIMLAGAIPSIVQILRAGSMEA-RENAAATLFSLSLLDENKI 470
A+ + N+ ++ + I+ A+P ++ +L ++ ++ A T+ +++ ++++I
Sbjct: 305 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQI 364
Query: 471 --IIGASGAIPALVDLLQNGSTRGRKDAATALFN 502
+I A G I LV+LLQ +K+AA A+ N
Sbjct: 365 QAVINA-GIIGPLVNLLQTAEFDIKKEAAWAISN 397
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 120/302 (39%), Gaps = 55/302 (18%)
Query: 380 SKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIP 438
S S RI+I AGA+P+ + LL+++ QE AV A+ N++ + ++ +P
Sbjct: 94 SGNSLQTRIVI-QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILP 152
Query: 439 SIVQIL-RAGSMEARENAAATLFSLSLLDENKI----IIGASGAIPALVDLLQNGSTRGR 493
++Q+ + + NA +++LS L K S + L LL T
Sbjct: 153 PLLQLFSKQNRLTMTRNA---VWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVL 209
Query: 494 KDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDSRNCMVDEAL-------------- 538
DA AL L +K +AV AG+ L+++L + +V AL
Sbjct: 210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269
Query: 539 -----------------------------TILSVLASNPEAKIAIVKASTIPVLIVLLRT 569
TI ++ A N ++ A+ P LI +L+T
Sbjct: 270 QVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT 329
Query: 570 GLPRN-KENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
R KE A AI + E + + LG + PL +L + + A + LE++
Sbjct: 330 AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389
Query: 629 KL 630
+L
Sbjct: 390 RL 391
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIP 438
LS D + DAG LV LL +D A+ A+ N+ ++ + ++L +
Sbjct: 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278
Query: 439 SIVQILRAGSMEA-RENAAATLFSLSLLDENKI--IIGASGAIPALVDLLQNGSTRGRKD 495
+ L + E+ ++ A T+ +++ + +I +I A+ PAL+ +LQ R RK+
Sbjct: 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN-IFPALISILQTAEFRTRKE 337
Query: 496 AATALFN 502
AA A+ N
Sbjct: 338 AAWAITN 344
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
+P +FL P+ +M+DPVI+ A+ +RS I+ + + T P + L+ +TPN
Sbjct: 902 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEE 960
Query: 313 LRSLI 317
LR I
Sbjct: 961 LRQKI 965
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
+P +FL P+ +M+DPVI+ A+ +RS I+ + + T P + L+ +TPN
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEE 946
Query: 313 LRSLI 317
LR I
Sbjct: 947 LRQKI 951
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 239 AIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKT 298
A + AEI D P +F P+ LM DPV + +G +RS I R + + T P
Sbjct: 14 AKNARAEIDYSDA---PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFN 69
Query: 299 QQKLEHLTLTPNYVLRSLISQWC 321
+Q L L P L+ I W
Sbjct: 70 RQTLTESMLEPVPELKEQIQAWM 92
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 244 AEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303
AEI D P +F P+ LM DPV + +G +RS I R + + T P +Q L
Sbjct: 4 AEIDYSDA---PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLT 59
Query: 304 HLTLTPNYVLRSLISQW 320
L P L+ I W
Sbjct: 60 ESMLEPVPELKEQIQAW 76
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 354 IEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMT 410
+ A+VR + ++ VE R + +LS + + I +G IP LV +L + D V+
Sbjct: 57 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 115
Query: 411 QEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQIL 444
+A+T + NL ++ E K + LAG + +V +L
Sbjct: 116 --YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 148
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNK 428
+AAV + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 32 KAAVM-VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 90
Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQN 487
I +G IP++V++L + A TL +L L E K+ + +G + +V LL
Sbjct: 91 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
Query: 488 GSTR 491
+ +
Sbjct: 151 TNVK 154
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 354 IEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMT 410
+ A+VR + ++ VE R + +LS + + I +G IP LV +L + D V+
Sbjct: 57 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 115
Query: 411 QEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQIL 444
+A+T + NL ++ E K + LAG + +V +L
Sbjct: 116 --YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 148
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNK 428
+AAV + LSK+ I+ + +V + T+DV T + NLS +
Sbjct: 32 KAAVM-VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 90
Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQN 487
I +G IP++V++L + A TL +L L E K+ + +G + +V LL
Sbjct: 91 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
Query: 488 GSTR 491
+ +
Sbjct: 151 TNVK 154
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 257 DFLCPISLELMRDPVIVATGQ-TYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRS 315
+FL PI LM DPV++ + + T +RS I R + + T P + L + PN L+
Sbjct: 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTDPFNRSPLTMDQIRPNTELKE 80
Query: 316 LISQW 320
I +W
Sbjct: 81 KIQRW 85
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPD 217
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 218 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 276 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 333
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 334 AGALAVFPSLL 344
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 175
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 176 AHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I + +FRD+ AI+ L V LS+ + R + +
Sbjct: 177 HISEQAV-WALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 295
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 296 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 387
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
+P +FL P+ + +DPVI+ A+ +RS I+ + + T P + L+ +TPN
Sbjct: 902 VPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHL-LSDSTDPFNRXPLKLEDVTPNEE 960
Query: 313 LRSLI 317
LR I
Sbjct: 961 LRQKI 965
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 148
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 149 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 207 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 264
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 265 AGALAVFPSLL 275
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 47 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 106
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 107 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 108 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 166
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 167 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 226
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 227 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 286
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLTDS 529
+ N+ ++ + V G++ L+ +L+ +
Sbjct: 287 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 320
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 17/205 (8%)
Query: 376 IRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLA 434
+ +++ +++ + D GAIP ++LL + E AV A+ N++ + + L++
Sbjct: 111 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 170
Query: 435 GAIPSIVQILRAGSMEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQ 486
GAI ++ +L + A L ++LS L NK + +P LV LL
Sbjct: 171 GAIDPLLALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 228
Query: 487 NGSTRGRKDAATALFNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILS 542
+ D+ A+ L G R V+ G++ L+K+L + +V AL I +
Sbjct: 229 HNDPEVLADSCWAISYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 543 VLASNPEAKIAIVKASTIPVLIVLL 567
++ E ++ A + V LL
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLL 311
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 83 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 142
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 143 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 179
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 144 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 202
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 203 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 262
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 263 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 322
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 323 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 354
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 115 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 174
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 175 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 232
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 233 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 290
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 291 AGALAVFPSLL 301
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 73 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 132
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 133 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 169
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 134 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 192
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 193 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 252
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 253 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 312
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 313 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 344
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 199 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 257 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 314
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 315 AGALAVFPSLL 325
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 156
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 157 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 158 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 17/205 (8%)
Query: 376 IRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLA 434
+ +++ +++ + D GAIP ++LL + E AV A+ N++ + + L++
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 435 GAIPSIVQILRAGSMEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQ 486
GAI ++ +L + A L ++LS L NK + +P LV LL
Sbjct: 185 GAIDPLLALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 242
Query: 487 NGSTRGRKDAATALFNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILS 542
+ D+ A+ L G R V+ G++ L+K+L + +V AL I +
Sbjct: 243 HNDPEVLADSCWAISYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 543 VLASNPEAKIAIVKASTIPVLIVLL 567
++ E ++ A + V LL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLL 325
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 156
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 157 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 158 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 260 CPISLELMRDPVIVATGQTYERSYIQRW 287
C + LE +++PVI+ G + ++ I RW
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRW 45
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 154
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 155 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 212
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 213 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 270
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 271 AGALAVFPSLL 281
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 53 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 112
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 113 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 149
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 114 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 232
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 233 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 292
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 324
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 84 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 143
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 144 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 202 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 259
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 260 AGALAVFPSLL 270
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 103 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 161
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 162 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 221
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 222 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 281
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLTDS 529
+ N+ ++ + V G++ L+ +L+ +
Sbjct: 282 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 315
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 42 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 101
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 102 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 138
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 199 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 257 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 314
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 315 AGALAVFPSLL 325
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 156
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 157 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 158 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 84 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 143
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 144 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 201
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 202 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 259
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 260 AGALAVFPSLL 270
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 103 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 161
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 162 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 221
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 222 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 281
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLTDS 529
+ N+ ++ + V G++ L+ +L+ +
Sbjct: 282 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 315
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 42 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 101
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 102 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 138
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 88 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 147
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 148 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 206 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 263
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 264 AGALAVFPSLL 274
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 46 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 105
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 106 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 142
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 107 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 165
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 166 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 225
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 226 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 285
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLTDS 529
+ N+ ++ + V G++ L+ +L+ +
Sbjct: 286 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 319
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 148
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 149 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 207 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 264
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 265 AGALAVFPSLL 275
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 47 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 106
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 107 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 108 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 166
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 167 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 226
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 227 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 286
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLTDS 529
+ N+ ++ + V G++ L+ +L+ +
Sbjct: 287 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 320
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 123 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 182
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 183 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 240
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 241 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 298
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 299 AGALAVFPSLL 309
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 81 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 140
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 141 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 177
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 142 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 200
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 201 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 260
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 261 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 320
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLT 527
+ N+ ++ + V G++ L+ +L+
Sbjct: 321 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 352
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 148
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 149 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 206
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 207 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 264
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 265 AGALAVFPSLL 275
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 47 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 106
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 107 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 108 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 166
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 167 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 226
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 227 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 286
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLTDS 529
+ N+ ++ + V G++ L+ +L+ +
Sbjct: 287 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 320
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLIMLAGAIPSIVQILRAGS 448
+ D GAIP ++LL + E AV A+ N++ + + L++ GAI ++ +L
Sbjct: 88 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 147
Query: 449 MEARENAAATL----FSLSLLDENK----IIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
+ A L ++LS L NK + +P LV LL + D+ A+
Sbjct: 148 LSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 205
Query: 501 FNLCIYMGNKGR---AVRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVK 556
L G R V+ G++ L+K+L + +V AL I +++ E ++
Sbjct: 206 SYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 263
Query: 557 ASTIPVLIVLL 567
A + V LL
Sbjct: 264 AGALAVFPSLL 274
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571
+RAG+I + L TD + A + ++ + E A+V IP I LL +
Sbjct: 46 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 105
Query: 572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
E A L ++ + + + GA+ PL L
Sbjct: 106 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 142
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 9/214 (4%)
Query: 324 HNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL-----VRKLSSRSVEERRAAVAEIRS 378
H EQ + A G I +FRD+ AI+ L V LS+ + R + +
Sbjct: 107 HISEQAV-WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 165
Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAI 437
L + + A +P LV LL +D + AI L+ N + +++ G +
Sbjct: 166 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 225
Query: 438 PSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDA 496
P +V++L A + A + ++ + DE + +GA+ LL N T +K+A
Sbjct: 226 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 285
Query: 497 ATALFNLCIYMGNK-GRAVRAGIISALLKMLTDS 529
+ N+ ++ + V G++ L+ +L+ +
Sbjct: 286 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 319
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 477 AIPALVDLLQNGSTRGRKDAATALFNLCIY------MGNKGRAVRAGIISALLKMLTDSR 530
+P + LLQ+G++ + A+ L N+ + MGN+ ++++ ++S
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391
Query: 531 NCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584
+ + T+ +++AS P+ +S + +I L R+ AA +LLS
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
++ L++ L S S+ A + +LS R+ ++ + D GA+ +L NL+ + M
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 324
Query: 414 AVTAILNL 421
+ A+ NL
Sbjct: 325 SAAALRNL 332
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
++ L++ L S S+ A + +LS R+ ++ + D GA+ +L NL+ + M
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 324
Query: 414 AVTAILNL 421
+ A+ NL
Sbjct: 325 SAAALRNL 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,234,799
Number of Sequences: 62578
Number of extensions: 612685
Number of successful extensions: 2016
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 225
length of query: 636
length of database: 14,973,337
effective HSP length: 105
effective length of query: 531
effective length of database: 8,402,647
effective search space: 4461805557
effective search space used: 4461805557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)