Query 006669
Match_columns 636
No_of_seqs 430 out of 2561
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:46:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 8.4E-29 1.8E-33 299.0 33.3 281 350-630 11-313 (2102)
2 PLN03200 cellulose synthase-in 100.0 5.9E-27 1.3E-31 283.1 32.4 283 349-632 443-767 (2102)
3 KOG4224 Armadillo repeat prote 99.9 3E-26 6.5E-31 230.1 18.8 279 349-628 123-404 (550)
4 KOG4224 Armadillo repeat prote 99.9 1.7E-24 3.6E-29 217.6 21.3 276 352-629 167-446 (550)
5 KOG0166 Karyopherin (importin) 99.9 1.6E-23 3.4E-28 224.6 23.9 278 352-629 109-393 (514)
6 KOG0166 Karyopherin (importin) 99.9 8.2E-22 1.8E-26 211.4 24.3 285 347-631 147-438 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 2.6E-20 5.5E-25 186.2 19.9 283 346-630 151-444 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 6.3E-21 1.4E-25 190.5 14.7 281 349-629 111-398 (526)
9 PF04564 U-box: U-box domain; 99.8 4.6E-21 9.9E-26 156.4 5.3 72 254-325 1-72 (73)
10 PF05804 KAP: Kinesin-associat 99.8 1.3E-16 2.8E-21 180.4 27.0 255 366-628 263-519 (708)
11 PF05804 KAP: Kinesin-associat 99.8 3.7E-16 7.9E-21 176.7 29.2 279 350-631 288-651 (708)
12 KOG1048 Neural adherens juncti 99.7 1.1E-15 2.5E-20 169.0 18.9 282 352-634 233-600 (717)
13 KOG4199 Uncharacterized conser 99.6 7.3E-14 1.6E-18 140.3 25.7 276 352-628 145-443 (461)
14 KOG1048 Neural adherens juncti 99.6 1.2E-14 2.5E-19 161.1 20.6 283 351-635 274-690 (717)
15 KOG2122 Beta-catenin-binding p 99.6 9E-15 2E-19 167.3 18.6 260 371-631 317-603 (2195)
16 KOG4199 Uncharacterized conser 99.6 2.9E-13 6.4E-18 136.0 25.8 268 358-629 113-403 (461)
17 smart00504 Ubox Modified RING 99.6 5.9E-16 1.3E-20 122.8 4.6 63 257-320 1-63 (63)
18 PF04826 Arm_2: Armadillo-like 99.5 1.8E-12 3.9E-17 131.1 21.5 194 391-588 9-206 (254)
19 PF04826 Arm_2: Armadillo-like 99.5 2.9E-12 6.4E-17 129.5 22.8 194 349-547 9-206 (254)
20 KOG2122 Beta-catenin-binding p 99.4 5.6E-12 1.2E-16 144.9 15.6 227 366-592 365-606 (2195)
21 PF10508 Proteasom_PSMB: Prote 99.4 2.5E-10 5.4E-15 127.6 28.2 274 352-627 77-364 (503)
22 KOG4500 Rho/Rac GTPase guanine 99.2 8.9E-10 1.9E-14 114.3 20.5 283 349-632 84-434 (604)
23 cd00020 ARM Armadillo/beta-cat 99.2 6E-10 1.3E-14 99.1 15.1 117 512-628 2-119 (120)
24 cd00020 ARM Armadillo/beta-cat 99.2 4.4E-10 9.6E-15 100.0 13.8 117 471-587 2-120 (120)
25 PF10508 Proteasom_PSMB: Prote 99.1 3.7E-08 8E-13 110.3 29.4 282 349-631 116-422 (503)
26 PRK09687 putative lyase; Provi 99.1 8.1E-09 1.8E-13 106.6 20.1 224 352-626 54-279 (280)
27 KOG1222 Kinesin associated pro 99.0 1.6E-08 3.4E-13 106.3 20.0 251 368-627 279-532 (791)
28 PRK09687 putative lyase; Provi 99.0 1.7E-08 3.6E-13 104.3 20.4 225 353-628 24-249 (280)
29 KOG1222 Kinesin associated pro 99.0 1.2E-07 2.7E-12 99.8 24.0 277 351-630 303-664 (791)
30 PF03224 V-ATPase_H_N: V-ATPas 99.0 2.8E-08 6.1E-13 104.6 19.6 249 375-623 33-308 (312)
31 KOG0168 Putative ubiquitin fus 99.0 4.2E-08 9.2E-13 109.2 21.2 257 351-611 166-437 (1051)
32 cd00256 VATPase_H VATPase_H, r 99.0 1.7E-07 3.8E-12 101.0 24.6 274 354-627 103-423 (429)
33 PF15227 zf-C3HC4_4: zinc fing 98.9 4.8E-10 1E-14 80.8 2.6 39 260-298 1-42 (42)
34 PLN03208 E3 ubiquitin-protein 98.9 1.1E-09 2.3E-14 104.0 4.5 61 252-312 13-88 (193)
35 KOG4642 Chaperone-dependent E3 98.9 5.4E-09 1.2E-13 101.4 8.8 184 107-326 83-280 (284)
36 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.9E-07 4.2E-12 98.3 19.4 220 356-576 62-303 (312)
37 KOG4500 Rho/Rac GTPase guanine 98.8 1.9E-07 4E-12 97.4 18.5 277 352-629 223-519 (604)
38 TIGR00599 rad18 DNA repair pro 98.8 5.6E-09 1.2E-13 110.8 5.8 69 253-322 22-90 (397)
39 PRK13800 putative oxidoreducta 98.8 8.9E-07 1.9E-11 106.0 25.2 168 350-545 619-803 (897)
40 KOG0946 ER-Golgi vesicle-tethe 98.7 6.6E-06 1.4E-10 91.6 27.3 274 351-628 21-345 (970)
41 KOG2160 Armadillo/beta-catenin 98.7 3.5E-06 7.6E-11 87.2 22.3 183 363-546 94-282 (342)
42 PRK13800 putative oxidoreducta 98.7 4.3E-06 9.4E-11 100.2 26.4 229 351-626 651-896 (897)
43 PF11789 zf-Nse: Zinc-finger o 98.7 6.1E-09 1.3E-13 80.0 1.3 45 255-299 9-55 (57)
44 KOG4646 Uncharacterized conser 98.5 6.2E-07 1.3E-11 79.8 10.0 156 473-628 13-169 (173)
45 KOG2160 Armadillo/beta-catenin 98.5 6.6E-06 1.4E-10 85.1 18.5 178 447-624 95-277 (342)
46 PF13923 zf-C3HC4_2: Zinc fing 98.5 6.1E-08 1.3E-12 68.8 2.3 38 260-298 1-39 (39)
47 PF01602 Adaptin_N: Adaptin N 98.5 1.1E-05 2.3E-10 91.1 21.2 217 353-589 80-298 (526)
48 PF01602 Adaptin_N: Adaptin N 98.5 1.7E-05 3.7E-10 89.5 22.1 252 353-628 115-368 (526)
49 PF13445 zf-RING_UBOX: RING-ty 98.4 8.5E-08 1.8E-12 69.1 1.4 36 260-296 1-43 (43)
50 cd00256 VATPase_H VATPase_H, r 98.4 0.00015 3.2E-09 78.6 25.0 235 394-628 53-307 (429)
51 KOG2973 Uncharacterized conser 98.3 0.00022 4.7E-09 72.3 22.7 269 354-629 5-315 (353)
52 KOG2759 Vacuolar H+-ATPase V1 98.3 0.00011 2.3E-09 77.4 21.3 272 354-628 116-437 (442)
53 KOG0823 Predicted E3 ubiquitin 98.3 3.5E-07 7.7E-12 88.5 2.6 57 256-312 46-104 (230)
54 PF00097 zf-C3HC4: Zinc finger 98.2 6.4E-07 1.4E-11 64.3 2.4 39 260-298 1-41 (41)
55 KOG0287 Postreplication repair 98.2 7.8E-07 1.7E-11 89.6 3.6 67 254-321 20-86 (442)
56 KOG4646 Uncharacterized conser 98.2 1.3E-05 2.8E-10 71.6 10.2 149 435-583 16-166 (173)
57 PF13920 zf-C3HC4_3: Zinc fing 98.2 1E-06 2.3E-11 66.2 2.7 47 256-303 1-48 (50)
58 PF05536 Neurochondrin: Neuroc 98.2 0.00018 3.9E-09 81.2 21.5 234 352-586 5-260 (543)
59 PHA02929 N1R/p28-like protein; 98.1 1.9E-06 4E-11 85.7 4.0 49 254-303 171-227 (238)
60 KOG0168 Putative ubiquitin fus 98.1 8.8E-05 1.9E-09 83.5 16.7 212 396-611 169-391 (1051)
61 KOG2177 Predicted E3 ubiquitin 98.1 2.6E-06 5.6E-11 88.9 4.7 69 253-324 9-77 (386)
62 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00052 1.1E-08 77.0 22.0 246 353-598 62-357 (970)
63 KOG1293 Proteins containing ar 98.1 0.00044 9.6E-09 76.4 21.0 149 448-596 390-542 (678)
64 KOG2171 Karyopherin (importin) 98.0 0.001 2.2E-08 77.9 24.6 270 354-629 161-504 (1075)
65 PF05536 Neurochondrin: Neuroc 98.0 0.00012 2.6E-09 82.6 16.4 188 437-627 7-211 (543)
66 cd00162 RING RING-finger (Real 98.0 7.6E-06 1.7E-10 59.2 3.6 43 259-301 1-44 (45)
67 KOG3678 SARM protein (with ste 98.0 0.00037 8E-09 73.8 17.3 263 351-629 179-452 (832)
68 KOG0317 Predicted E3 ubiquitin 98.0 6.4E-06 1.4E-10 82.2 4.0 54 254-308 236-289 (293)
69 KOG1293 Proteins containing ar 97.9 0.00079 1.7E-08 74.5 20.1 225 363-588 388-628 (678)
70 KOG2171 Karyopherin (importin) 97.9 0.00089 1.9E-08 78.4 21.3 236 353-590 349-597 (1075)
71 PTZ00429 beta-adaptin; Provisi 97.9 0.0028 6E-08 73.8 25.6 212 353-584 33-245 (746)
72 COG5432 RAD18 RING-finger-cont 97.9 7.8E-06 1.7E-10 80.9 3.4 66 255-321 23-88 (391)
73 PF14835 zf-RING_6: zf-RING of 97.9 4.9E-06 1.1E-10 64.2 1.5 58 257-317 7-65 (65)
74 TIGR02270 conserved hypothetic 97.9 0.0012 2.5E-08 71.9 20.1 219 353-629 55-296 (410)
75 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0046 9.9E-08 66.5 24.3 271 354-629 27-364 (371)
76 PTZ00429 beta-adaptin; Provisi 97.9 0.0042 9.2E-08 72.3 25.5 185 353-546 141-326 (746)
77 smart00184 RING Ring finger. E 97.9 1.4E-05 3E-10 55.7 3.3 39 260-298 1-39 (39)
78 KOG2042 Ubiquitin fusion degra 97.8 1.6E-05 3.5E-10 91.7 5.0 72 252-324 865-937 (943)
79 COG5113 UFD2 Ubiquitin fusion 97.8 3.2E-05 7E-10 84.0 6.9 75 249-324 846-921 (929)
80 PF13639 zf-RING_2: Ring finge 97.8 7.4E-06 1.6E-10 59.7 1.2 40 259-299 2-44 (44)
81 KOG2023 Nuclear transport rece 97.8 0.0006 1.3E-08 75.2 16.0 269 352-631 128-465 (885)
82 PF00514 Arm: Armadillo/beta-c 97.8 4.2E-05 9.1E-10 54.8 4.6 40 383-422 1-40 (41)
83 PHA02926 zinc finger-like prot 97.7 2.4E-05 5.2E-10 75.4 3.6 51 253-303 166-230 (242)
84 KOG2759 Vacuolar H+-ATPase V1 97.7 0.0031 6.7E-08 66.7 19.2 230 356-587 160-438 (442)
85 KOG2734 Uncharacterized conser 97.7 0.0054 1.2E-07 65.1 20.7 238 370-609 102-370 (536)
86 KOG0289 mRNA splicing factor [ 97.7 6E-05 1.3E-09 78.9 5.8 52 258-310 1-53 (506)
87 KOG0212 Uncharacterized conser 97.7 0.00078 1.7E-08 73.2 14.0 228 353-587 209-444 (675)
88 KOG0320 Predicted E3 ubiquitin 97.6 2.8E-05 6.1E-10 72.3 2.7 52 257-309 131-184 (187)
89 PF12348 CLASP_N: CLASP N term 97.6 0.00077 1.7E-08 67.5 12.9 182 445-630 17-207 (228)
90 PF00514 Arm: Armadillo/beta-c 97.6 0.00015 3.3E-09 51.9 4.9 40 507-546 2-41 (41)
91 PF12348 CLASP_N: CLASP N term 97.5 0.0008 1.7E-08 67.3 11.6 184 361-548 16-208 (228)
92 TIGR00570 cdk7 CDK-activating 97.5 0.0001 2.2E-09 75.5 4.2 53 256-308 2-59 (309)
93 KOG2973 Uncharacterized conser 97.5 0.0029 6.2E-08 64.4 14.3 186 438-629 6-204 (353)
94 PF10165 Ric8: Guanine nucleot 97.4 0.013 2.8E-07 64.8 20.7 232 363-594 43-344 (446)
95 COG1413 FOG: HEAT repeat [Ener 97.4 0.018 3.8E-07 61.2 21.2 185 352-585 43-240 (335)
96 PF14664 RICTOR_N: Rapamycin-i 97.4 0.014 3E-07 62.8 19.5 247 378-627 9-267 (371)
97 TIGR02270 conserved hypothetic 97.4 0.012 2.6E-07 64.1 19.0 152 394-586 54-206 (410)
98 PF10165 Ric8: Guanine nucleot 97.4 0.014 3E-07 64.6 19.7 258 372-630 1-338 (446)
99 KOG3678 SARM protein (with ste 97.3 0.0042 9E-08 66.1 14.4 179 387-567 173-360 (832)
100 COG5369 Uncharacterized conser 97.3 0.0025 5.5E-08 68.9 12.6 259 370-628 407-740 (743)
101 KOG2734 Uncharacterized conser 97.3 0.076 1.6E-06 56.7 23.1 238 350-588 123-401 (536)
102 COG5574 PEX10 RING-finger-cont 97.3 0.00015 3.3E-09 71.6 3.1 54 252-305 209-264 (271)
103 KOG1789 Endocytosis protein RM 97.3 0.023 5.1E-07 65.8 20.4 119 367-486 1740-1863(2235)
104 KOG1059 Vesicle coat complex A 97.3 0.029 6.2E-07 63.0 20.2 256 353-631 182-445 (877)
105 KOG1242 Protein containing ada 97.2 0.018 3.9E-07 63.8 18.5 265 353-627 135-442 (569)
106 PF14634 zf-RING_5: zinc-RING 97.2 0.00034 7.4E-09 50.9 3.2 41 259-300 1-44 (44)
107 KOG0311 Predicted E3 ubiquitin 97.2 0.00012 2.7E-09 74.9 1.1 70 253-322 39-110 (381)
108 PF13646 HEAT_2: HEAT repeats; 97.1 0.0025 5.5E-08 53.2 8.7 86 437-542 1-88 (88)
109 COG1413 FOG: HEAT repeat [Ener 97.1 0.026 5.6E-07 59.9 17.7 192 394-627 43-240 (335)
110 PF13646 HEAT_2: HEAT repeats; 97.0 0.0018 3.9E-08 54.2 6.7 86 396-501 1-88 (88)
111 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00059 1.3E-08 55.5 3.3 39 260-299 22-73 (73)
112 KOG0297 TNF receptor-associate 97.0 0.0005 1.1E-08 74.4 3.8 66 254-320 18-85 (391)
113 KOG0212 Uncharacterized conser 97.0 0.018 3.9E-07 62.9 15.2 230 395-630 168-407 (675)
114 KOG0978 E3 ubiquitin ligase in 97.0 0.00029 6.2E-09 79.5 1.4 53 258-310 644-696 (698)
115 smart00185 ARM Armadillo/beta- 96.9 0.002 4.3E-08 45.5 5.2 39 384-422 2-40 (41)
116 KOG2164 Predicted E3 ubiquitin 96.9 0.00049 1.1E-08 74.1 2.6 72 255-326 184-263 (513)
117 KOG4413 26S proteasome regulat 96.9 0.17 3.8E-06 52.1 20.2 271 357-628 87-376 (524)
118 KOG1242 Protein containing ada 96.9 0.09 2E-06 58.4 19.6 222 353-587 217-444 (569)
119 KOG4413 26S proteasome regulat 96.8 0.091 2E-06 54.1 17.9 279 350-629 126-439 (524)
120 KOG1517 Guanine nucleotide bin 96.8 0.047 1E-06 63.6 17.5 228 369-596 484-741 (1387)
121 COG5231 VMA13 Vacuolar H+-ATPa 96.8 0.055 1.2E-06 55.5 15.9 228 401-628 156-427 (432)
122 KOG4159 Predicted E3 ubiquitin 96.8 0.0011 2.4E-08 70.9 4.2 71 252-323 79-154 (398)
123 KOG1059 Vesicle coat complex A 96.8 0.16 3.6E-06 57.2 20.7 250 351-628 143-401 (877)
124 KOG2259 Uncharacterized conser 96.7 0.034 7.3E-07 61.9 14.7 218 353-585 199-473 (823)
125 smart00185 ARM Armadillo/beta- 96.7 0.0038 8.2E-08 44.0 4.9 40 425-464 2-41 (41)
126 KOG2023 Nuclear transport rece 96.6 0.025 5.4E-07 62.9 13.1 173 394-567 128-308 (885)
127 PF11841 DUF3361: Domain of un 96.6 0.053 1.1E-06 50.7 13.4 122 470-591 5-135 (160)
128 KOG1248 Uncharacterized conser 96.4 0.13 2.8E-06 61.1 17.6 222 404-629 664-898 (1176)
129 PF09759 Atx10homo_assoc: Spin 96.3 0.019 4.2E-07 49.6 8.0 66 533-598 2-70 (102)
130 KOG3036 Protein involved in ce 96.3 0.3 6.5E-06 48.6 16.9 177 410-587 95-291 (293)
131 KOG2660 Locus-specific chromos 96.2 0.0025 5.3E-08 65.3 2.3 65 254-319 12-81 (331)
132 PF11841 DUF3361: Domain of un 96.2 0.084 1.8E-06 49.4 12.1 116 511-627 5-129 (160)
133 PF13513 HEAT_EZ: HEAT-like re 96.2 0.016 3.5E-07 44.0 6.2 55 490-544 1-55 (55)
134 PF09759 Atx10homo_assoc: Spin 96.1 0.027 5.8E-07 48.8 7.8 65 369-433 3-70 (102)
135 COG5369 Uncharacterized conser 96.1 0.031 6.6E-07 60.9 9.5 176 350-525 429-616 (743)
136 PF13513 HEAT_EZ: HEAT-like re 96.0 0.015 3.2E-07 44.2 5.3 55 449-503 1-55 (55)
137 COG5222 Uncharacterized conser 96.0 0.009 2E-07 59.8 4.9 65 258-322 275-341 (427)
138 PF04063 DUF383: Domain of unk 96.0 0.047 1E-06 53.1 9.8 122 489-610 8-157 (192)
139 KOG1517 Guanine nucleotide bin 95.9 0.096 2.1E-06 61.2 13.3 191 437-629 474-671 (1387)
140 KOG1241 Karyopherin (importin) 95.9 0.86 1.9E-05 52.0 20.3 226 358-587 223-477 (859)
141 KOG1241 Karyopherin (importin) 95.9 0.46 1E-05 54.1 18.2 264 353-630 130-436 (859)
142 KOG4628 Predicted E3 ubiquitin 95.9 0.0047 1E-07 64.6 2.7 47 258-304 230-279 (348)
143 PF04078 Rcd1: Cell differenti 95.8 0.86 1.9E-05 46.1 17.9 192 365-556 8-228 (262)
144 COG5096 Vesicle coat complex, 95.7 0.35 7.7E-06 56.0 16.9 168 361-547 28-196 (757)
145 KOG0802 E3 ubiquitin ligase [P 95.7 0.0046 1E-07 70.1 1.9 46 256-302 290-340 (543)
146 KOG1824 TATA-binding protein-i 95.7 0.44 9.6E-06 55.4 17.3 236 349-592 44-291 (1233)
147 PF08569 Mo25: Mo25-like; Int 95.7 0.48 1E-05 50.3 16.5 197 352-550 76-287 (335)
148 KOG1062 Vesicle coat complex A 95.6 1.5 3.2E-05 50.5 20.7 248 352-612 142-453 (866)
149 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.0088 1.9E-07 61.3 3.1 54 254-309 110-167 (260)
150 KOG0213 Splicing factor 3b, su 95.6 0.44 9.6E-06 54.0 16.1 166 353-528 800-971 (1172)
151 KOG1789 Endocytosis protein RM 95.6 0.2 4.3E-06 58.6 13.7 135 492-628 1741-1882(2235)
152 KOG1002 Nucleotide excision re 95.4 0.0078 1.7E-07 64.7 2.1 50 256-305 535-588 (791)
153 COG5181 HSH155 U2 snRNP splice 95.4 0.77 1.7E-05 51.1 17.2 149 352-504 604-758 (975)
154 KOG0824 Predicted E3 ubiquitin 95.4 0.0078 1.7E-07 60.8 1.9 47 259-305 9-55 (324)
155 KOG3036 Protein involved in ce 95.1 1.3 2.8E-05 44.2 16.0 145 369-514 96-256 (293)
156 KOG1061 Vesicle coat complex A 95.1 0.32 7E-06 55.4 13.5 69 353-424 122-190 (734)
157 COG5540 RING-finger-containing 95.1 0.016 3.4E-07 58.5 2.8 47 258-304 324-373 (374)
158 COG5240 SEC21 Vesicle coat com 95.1 2.1 4.5E-05 47.5 18.9 257 355-629 267-555 (898)
159 COG5181 HSH155 U2 snRNP splice 95.0 0.12 2.6E-06 57.2 9.4 149 396-546 606-759 (975)
160 PF13764 E3_UbLigase_R4: E3 ub 94.9 2.9 6.2E-05 49.4 21.2 241 389-631 112-408 (802)
161 KOG3039 Uncharacterized conser 94.9 0.02 4.4E-07 56.1 3.0 54 256-310 220-277 (303)
162 KOG4151 Myosin assembly protei 94.8 0.34 7.3E-06 55.5 12.9 194 424-622 493-692 (748)
163 KOG3039 Uncharacterized conser 94.8 0.014 3E-07 57.2 1.7 34 256-289 42-75 (303)
164 COG5231 VMA13 Vacuolar H+-ATPa 94.8 2 4.3E-05 44.5 16.8 221 365-586 162-427 (432)
165 PF05004 IFRD: Interferon-rela 94.7 1.8 3.9E-05 45.6 17.4 185 402-587 51-257 (309)
166 KOG0826 Predicted E3 ubiquitin 94.7 0.023 5.1E-07 58.0 3.1 52 252-304 295-347 (357)
167 KOG2979 Protein involved in DN 94.7 0.032 6.9E-07 55.4 3.9 47 255-301 174-222 (262)
168 KOG0804 Cytoplasmic Zn-finger 94.7 0.018 3.9E-07 61.2 2.3 48 253-303 171-222 (493)
169 KOG1077 Vesicle coat complex A 94.7 2.5 5.5E-05 48.0 18.7 222 367-597 163-406 (938)
170 PF05659 RPW8: Arabidopsis bro 94.6 0.098 2.1E-06 48.6 6.6 91 35-135 30-121 (147)
171 PF11698 V-ATPase_H_C: V-ATPas 94.6 0.1 2.3E-06 46.4 6.4 73 350-422 41-114 (119)
172 COG5243 HRD1 HRD ubiquitin lig 94.5 0.022 4.7E-07 59.0 2.4 47 255-302 285-344 (491)
173 KOG2259 Uncharacterized conser 94.5 0.32 6.9E-06 54.5 11.4 219 398-631 202-441 (823)
174 PF04063 DUF383: Domain of unk 94.4 0.23 4.9E-06 48.4 9.0 120 407-526 8-156 (192)
175 PF13764 E3_UbLigase_R4: E3 ub 94.3 8.2 0.00018 45.7 23.1 214 349-568 114-385 (802)
176 COG5152 Uncharacterized conser 94.3 0.021 4.6E-07 54.0 1.5 45 257-302 196-240 (259)
177 KOG1813 Predicted E3 ubiquitin 94.2 0.021 4.6E-07 57.6 1.4 47 256-303 240-286 (313)
178 KOG0567 HEAT repeat-containing 94.1 3.2 7E-05 42.0 16.4 91 518-629 188-280 (289)
179 KOG2999 Regulator of Rac1, req 94.0 1.1 2.3E-05 49.5 13.8 153 438-590 86-245 (713)
180 KOG2611 Neurochondrin/leucine- 94.0 3.2 7E-05 45.2 17.1 185 357-546 16-225 (698)
181 KOG0213 Splicing factor 3b, su 94.0 0.26 5.7E-06 55.7 9.4 148 397-546 802-954 (1172)
182 COG5096 Vesicle coat complex, 93.9 1.3 2.8E-05 51.5 15.2 168 444-630 28-196 (757)
183 KOG2879 Predicted E3 ubiquitin 93.9 0.05 1.1E-06 54.4 3.4 50 254-303 236-287 (298)
184 KOG1824 TATA-binding protein-i 93.6 1.6 3.6E-05 51.0 15.0 261 356-629 9-286 (1233)
185 KOG1060 Vesicle coat complex A 93.6 4.6 0.0001 46.6 18.2 208 354-586 37-245 (968)
186 PF05004 IFRD: Interferon-rela 93.5 4.9 0.00011 42.3 17.7 187 439-629 47-257 (309)
187 KOG1061 Vesicle coat complex A 93.5 0.56 1.2E-05 53.6 11.1 108 351-467 85-192 (734)
188 KOG4151 Myosin assembly protei 93.4 2.2 4.9E-05 49.1 15.8 242 383-629 493-741 (748)
189 PF12861 zf-Apc11: Anaphase-pr 93.4 0.1 2.2E-06 43.3 3.7 48 256-303 31-82 (85)
190 KOG4367 Predicted Zn-finger pr 93.4 0.037 8.1E-07 58.2 1.5 34 255-288 2-35 (699)
191 KOG1077 Vesicle coat complex A 93.3 7.5 0.00016 44.4 19.0 262 353-630 112-399 (938)
192 PF12717 Cnd1: non-SMC mitotic 93.3 5 0.00011 38.5 16.1 92 365-465 1-93 (178)
193 KOG1062 Vesicle coat complex A 93.2 2.5 5.5E-05 48.7 15.5 98 355-464 110-208 (866)
194 PF06371 Drf_GBD: Diaphanous G 93.0 1.2 2.6E-05 42.8 11.4 108 477-586 67-186 (187)
195 PF12755 Vac14_Fab1_bd: Vacuol 93.0 0.96 2.1E-05 38.9 9.4 91 493-586 3-95 (97)
196 PF06025 DUF913: Domain of Unk 92.7 17 0.00037 39.4 21.1 95 434-528 105-207 (379)
197 PF08045 CDC14: Cell division 92.7 1.2 2.6E-05 45.2 11.3 93 369-461 108-204 (257)
198 PF14668 RICTOR_V: Rapamycin-i 92.6 0.52 1.1E-05 38.3 6.8 66 493-558 4-70 (73)
199 PF12755 Vac14_Fab1_bd: Vacuol 92.5 0.85 1.8E-05 39.3 8.5 70 558-628 27-96 (97)
200 KOG2817 Predicted E3 ubiquitin 92.3 0.094 2E-06 55.3 2.8 41 258-298 335-380 (394)
201 PF04078 Rcd1: Cell differenti 92.3 1 2.3E-05 45.5 10.0 146 369-515 67-228 (262)
202 PF07814 WAPL: Wings apart-lik 92.3 5.1 0.00011 43.2 16.2 246 352-605 21-317 (361)
203 KOG2999 Regulator of Rac1, req 92.3 1.8 3.8E-05 47.8 12.3 151 477-627 84-240 (713)
204 PF12717 Cnd1: non-SMC mitotic 92.2 9.5 0.00021 36.5 16.5 92 407-506 1-93 (178)
205 KOG1248 Uncharacterized conser 92.0 6.2 0.00013 47.5 17.2 218 363-588 665-899 (1176)
206 PF08324 PUL: PUL domain; Int 92.0 4.7 0.0001 41.2 15.0 184 397-580 66-267 (268)
207 PF08045 CDC14: Cell division 92.0 1.7 3.6E-05 44.2 11.1 95 533-627 107-205 (257)
208 PF08569 Mo25: Mo25-like; Int 91.9 11 0.00023 40.2 17.6 198 390-589 72-285 (335)
209 KOG3113 Uncharacterized conser 91.7 0.12 2.5E-06 51.1 2.5 52 255-309 109-164 (293)
210 PF11698 V-ATPase_H_C: V-ATPas 91.6 0.43 9.2E-06 42.5 5.7 68 395-462 44-113 (119)
211 PF12719 Cnd3: Nuclear condens 91.6 6.7 0.00015 40.9 15.8 186 395-587 27-233 (298)
212 KOG4653 Uncharacterized conser 91.3 5.1 0.00011 46.6 15.1 214 404-627 737-962 (982)
213 KOG1078 Vesicle coat complex C 91.2 13 0.00029 43.0 18.1 257 353-628 246-531 (865)
214 KOG2611 Neurochondrin/leucine- 91.2 4.1 8.9E-05 44.4 13.4 142 442-585 18-180 (698)
215 KOG1058 Vesicle coat complex C 91.2 12 0.00025 43.3 17.4 218 365-606 219-486 (948)
216 KOG0828 Predicted E3 ubiquitin 91.0 0.13 2.8E-06 55.3 2.1 51 254-304 568-635 (636)
217 COG5215 KAP95 Karyopherin (imp 90.9 30 0.00065 38.9 19.7 266 358-630 100-438 (858)
218 KOG2274 Predicted importin 9 [ 90.7 4.3 9.2E-05 47.5 13.8 179 448-629 504-689 (1005)
219 PF12719 Cnd3: Nuclear condens 90.5 10 0.00022 39.5 16.0 168 353-528 27-208 (298)
220 KOG0567 HEAT repeat-containing 90.1 18 0.0004 36.7 16.1 196 350-586 65-279 (289)
221 KOG1240 Protein kinase contain 90.1 16 0.00035 44.3 18.0 254 365-628 436-724 (1431)
222 PF12031 DUF3518: Domain of un 89.6 1 2.3E-05 44.9 6.9 87 533-619 140-235 (257)
223 KOG4172 Predicted E3 ubiquitin 88.7 0.11 2.4E-06 38.7 -0.3 45 259-303 9-54 (62)
224 KOG0301 Phospholipase A2-activ 88.6 7.8 0.00017 44.0 13.5 162 360-528 552-727 (745)
225 PF12460 MMS19_C: RNAPII trans 88.4 15 0.00032 40.3 15.9 186 353-548 190-396 (415)
226 PF02891 zf-MIZ: MIZ/SP-RING z 88.3 0.38 8.3E-06 36.0 2.3 45 257-301 2-50 (50)
227 KOG1645 RING-finger-containing 88.2 0.26 5.7E-06 52.0 1.9 60 258-317 5-70 (463)
228 PF06371 Drf_GBD: Diaphanous G 88.2 4.3 9.2E-05 38.9 10.3 110 352-463 66-186 (187)
229 PF06025 DUF913: Domain of Unk 88.1 43 0.00093 36.3 19.8 95 394-488 106-208 (379)
230 KOG0211 Protein phosphatase 2A 87.9 13 0.00029 43.7 15.5 263 354-629 357-625 (759)
231 PF12460 MMS19_C: RNAPII trans 87.4 16 0.00034 40.2 15.3 127 477-607 272-413 (415)
232 PF11701 UNC45-central: Myosin 87.4 1.9 4E-05 40.6 7.0 143 437-583 5-155 (157)
233 KOG3665 ZYG-1-like serine/thre 87.3 31 0.00068 40.5 18.3 170 458-627 494-695 (699)
234 PF02985 HEAT: HEAT repeat; I 87.3 1.1 2.4E-05 29.6 3.8 30 518-547 1-30 (31)
235 KOG1788 Uncharacterized conser 87.2 9.7 0.00021 45.3 13.4 254 373-631 663-984 (2799)
236 KOG1039 Predicted E3 ubiquitin 87.2 0.42 9E-06 50.5 2.6 49 255-303 159-221 (344)
237 KOG3161 Predicted E3 ubiquitin 87.0 0.44 9.6E-06 52.9 2.8 40 254-296 8-51 (861)
238 KOG4464 Signaling protein RIC- 86.9 28 0.00061 37.5 15.7 101 366-466 111-233 (532)
239 KOG1240 Protein kinase contain 86.6 21 0.00046 43.3 16.1 225 353-587 463-725 (1431)
240 KOG1060 Vesicle coat complex A 86.3 14 0.0003 42.9 13.9 170 438-627 38-207 (968)
241 PF05918 API5: Apoptosis inhib 86.3 14 0.00031 41.7 14.1 97 352-460 59-158 (556)
242 KOG0396 Uncharacterized conser 86.2 0.35 7.6E-06 50.6 1.4 50 257-306 330-382 (389)
243 PF12031 DUF3518: Domain of un 86.1 2 4.3E-05 42.9 6.5 81 490-570 138-228 (257)
244 COG5215 KAP95 Karyopherin (imp 86.0 30 0.00066 38.8 15.9 227 357-590 226-482 (858)
245 PF05918 API5: Apoptosis inhib 86.0 11 0.00024 42.6 13.0 130 478-625 25-158 (556)
246 KOG0825 PHD Zn-finger protein 85.9 0.25 5.4E-06 56.0 0.2 50 257-307 123-175 (1134)
247 PF14570 zf-RING_4: RING/Ubox 85.7 0.7 1.5E-05 34.1 2.4 43 260-302 1-47 (48)
248 KOG2062 26S proteasome regulat 85.6 57 0.0012 37.8 18.1 127 438-584 522-650 (929)
249 COG5109 Uncharacterized conser 85.5 0.54 1.2E-05 48.0 2.3 43 257-299 336-383 (396)
250 KOG0883 Cyclophilin type, U bo 85.2 0.51 1.1E-05 49.5 2.0 53 257-310 40-92 (518)
251 smart00744 RINGv The RING-vari 85.0 1.1 2.4E-05 33.3 3.3 40 260-299 2-49 (49)
252 KOG1566 Conserved protein Mo25 84.1 50 0.0011 34.5 15.6 198 352-549 79-289 (342)
253 KOG0211 Protein phosphatase 2A 84.1 14 0.00031 43.4 13.3 186 354-545 238-426 (759)
254 COG5175 MOT2 Transcriptional r 84.0 0.69 1.5E-05 47.6 2.3 48 260-307 17-68 (480)
255 KOG1734 Predicted RING-contain 83.7 0.34 7.4E-06 48.4 0.0 54 256-309 223-287 (328)
256 PF02985 HEAT: HEAT repeat; I 83.7 1.9 4.1E-05 28.5 3.6 28 560-587 2-29 (31)
257 KOG4535 HEAT and armadillo rep 83.5 2.3 5E-05 46.3 6.0 177 410-587 407-603 (728)
258 COG5240 SEC21 Vesicle coat com 83.1 65 0.0014 36.3 16.8 112 352-470 223-338 (898)
259 KOG1078 Vesicle coat complex C 82.9 83 0.0018 36.8 18.1 69 395-467 246-314 (865)
260 KOG2274 Predicted importin 9 [ 82.8 52 0.0011 39.0 16.7 225 364-595 462-697 (1005)
261 COG5209 RCD1 Uncharacterized p 82.7 13 0.00028 36.8 10.3 146 411-556 117-278 (315)
262 COG5627 MMS21 DNA repair prote 82.5 0.79 1.7E-05 44.9 2.0 54 257-310 189-246 (275)
263 KOG0827 Predicted E3 ubiquitin 82.3 0.92 2E-05 47.7 2.5 52 256-307 3-60 (465)
264 KOG1785 Tyrosine kinase negati 82.3 0.72 1.6E-05 48.5 1.7 48 259-306 371-419 (563)
265 KOG1001 Helicase-like transcri 80.7 0.48 1E-05 54.8 -0.2 48 258-306 455-503 (674)
266 PF11701 UNC45-central: Myosin 80.5 8 0.00017 36.3 8.0 144 396-543 5-156 (157)
267 PF11707 Npa1: Ribosome 60S bi 79.5 89 0.0019 33.1 17.8 155 396-550 58-241 (330)
268 COG5219 Uncharacterized conser 79.4 1.1 2.4E-05 52.0 2.1 44 259-302 1471-1522(1525)
269 KOG3665 ZYG-1-like serine/thre 79.4 52 0.0011 38.7 15.8 192 375-583 494-693 (699)
270 PF12530 DUF3730: Protein of u 79.1 74 0.0016 31.9 18.1 137 396-546 2-151 (234)
271 KOG1820 Microtubule-associated 78.6 36 0.00078 40.5 14.1 180 356-546 257-443 (815)
272 KOG1820 Microtubule-associated 78.6 32 0.00069 40.9 13.7 179 444-628 262-442 (815)
273 PF11793 FANCL_C: FANCL C-term 78.4 0.61 1.3E-05 37.5 -0.2 47 257-303 2-66 (70)
274 KOG1943 Beta-tubulin folding c 78.2 1.7E+02 0.0037 35.6 19.6 216 352-578 341-602 (1133)
275 PF14500 MMS19_N: Dos2-interac 78.1 64 0.0014 33.1 14.3 211 357-588 4-238 (262)
276 KOG2025 Chromosome condensatio 77.9 92 0.002 36.1 16.2 115 393-514 84-199 (892)
277 KOG0414 Chromosome condensatio 77.9 12 0.00027 45.1 9.9 138 395-546 920-1064(1251)
278 KOG1058 Vesicle coat complex C 77.6 61 0.0013 37.7 14.8 91 361-462 108-199 (948)
279 PF08324 PUL: PUL domain; Int 77.5 19 0.00041 36.8 10.5 136 488-623 122-268 (268)
280 PF14668 RICTOR_V: Rapamycin-i 77.5 15 0.00032 29.8 7.5 67 534-601 4-71 (73)
281 KOG4653 Uncharacterized conser 77.2 17 0.00038 42.5 10.6 176 445-629 737-918 (982)
282 KOG1571 Predicted E3 ubiquitin 77.1 1.4 3.1E-05 46.2 1.9 47 252-302 300-346 (355)
283 KOG3800 Predicted E3 ubiquitin 77.1 2.8 6E-05 42.7 3.9 48 260-307 3-55 (300)
284 PF11707 Npa1: Ribosome 60S bi 76.9 1.1E+02 0.0023 32.5 17.0 154 354-507 58-239 (330)
285 KOG1788 Uncharacterized conser 76.6 1.1E+02 0.0025 37.0 16.6 80 508-587 899-982 (2799)
286 KOG0915 Uncharacterized conser 76.5 52 0.0011 41.2 14.7 101 489-590 970-1071(1702)
287 KOG4692 Predicted E3 ubiquitin 76.4 1.6 3.4E-05 45.3 2.0 49 253-302 416-466 (489)
288 cd03569 VHS_Hrs_Vps27p VHS dom 76.4 15 0.00032 33.9 8.3 73 351-423 40-114 (142)
289 cd03561 VHS VHS domain family; 76.0 17 0.00038 33.0 8.7 73 351-423 36-112 (133)
290 PF11865 DUF3385: Domain of un 75.9 28 0.00061 32.8 10.3 143 436-585 11-155 (160)
291 PF14726 RTTN_N: Rotatin, an a 75.5 23 0.00051 30.5 8.6 92 367-458 2-94 (98)
292 PF10363 DUF2435: Protein of u 74.3 10 0.00022 32.2 6.1 70 352-423 3-72 (92)
293 KOG1967 DNA repair/transcripti 74.2 20 0.00043 42.4 10.1 144 394-540 867-1018(1030)
294 COG5209 RCD1 Uncharacterized p 73.7 25 0.00055 34.8 9.3 144 369-513 117-276 (315)
295 PF14225 MOR2-PAG1_C: Cell mor 72.1 1.2E+02 0.0026 31.0 16.8 147 435-585 60-252 (262)
296 cd03568 VHS_STAM VHS domain fa 71.4 23 0.00049 32.8 8.3 73 351-423 36-110 (144)
297 KOG2933 Uncharacterized conser 71.2 57 0.0012 34.0 11.6 135 441-584 94-231 (334)
298 PF08167 RIX1: rRNA processing 71.2 23 0.00051 33.5 8.6 108 437-546 27-143 (165)
299 KOG4535 HEAT and armadillo rep 70.7 6.6 0.00014 42.9 5.0 153 394-546 433-603 (728)
300 KOG4265 Predicted E3 ubiquitin 69.2 2.7 5.8E-05 44.1 1.7 47 257-304 290-337 (349)
301 COG5098 Chromosome condensatio 68.9 68 0.0015 37.0 12.4 107 478-589 301-417 (1128)
302 cd03561 VHS VHS domain family; 68.9 22 0.00048 32.3 7.6 71 559-629 38-112 (133)
303 cd03567 VHS_GGA VHS domain fam 68.6 30 0.00064 31.9 8.3 73 351-423 37-116 (139)
304 KOG2933 Uncharacterized conser 68.5 36 0.00079 35.4 9.5 135 478-624 90-229 (334)
305 KOG0301 Phospholipase A2-activ 67.9 1.4E+02 0.003 34.4 14.6 172 403-580 553-740 (745)
306 smart00288 VHS Domain present 67.5 32 0.0007 31.3 8.3 73 351-423 36-111 (133)
307 PF14447 Prok-RING_4: Prokaryo 67.0 3 6.5E-05 31.6 1.1 43 260-305 10-52 (55)
308 KOG1243 Protein kinase [Genera 66.8 1.4E+02 0.0031 34.5 14.6 253 357-626 259-512 (690)
309 KOG2956 CLIP-associating prote 66.7 2.1E+02 0.0046 31.7 16.8 145 478-629 331-477 (516)
310 KOG4275 Predicted E3 ubiquitin 66.3 1.3 2.7E-05 45.0 -1.3 39 257-302 300-341 (350)
311 KOG1991 Nuclear transport rece 65.4 1.1E+02 0.0024 36.7 13.7 133 394-528 410-558 (1010)
312 cd03568 VHS_STAM VHS domain fa 65.4 23 0.00051 32.7 7.0 71 558-628 37-109 (144)
313 KOG0915 Uncharacterized conser 65.0 1.7E+02 0.0037 37.0 15.5 181 365-550 970-1164(1702)
314 PRK14707 hypothetical protein; 65.0 4.5E+02 0.0098 34.9 19.8 267 354-624 165-440 (2710)
315 KOG2062 26S proteasome regulat 64.7 1.2E+02 0.0026 35.4 13.4 97 435-545 554-652 (929)
316 KOG1493 Anaphase-promoting com 64.6 1.9 4.2E-05 34.7 -0.3 31 273-303 49-81 (84)
317 cd03569 VHS_Hrs_Vps27p VHS dom 64.5 27 0.00059 32.2 7.3 72 558-629 41-114 (142)
318 KOG0414 Chromosome condensatio 62.8 65 0.0014 39.3 11.4 139 477-628 920-1063(1251)
319 PF01347 Vitellogenin_N: Lipop 62.7 1.6E+02 0.0035 33.9 15.0 206 354-583 349-585 (618)
320 PF08167 RIX1: rRNA processing 62.5 41 0.00089 31.8 8.3 112 476-590 25-146 (165)
321 COG5116 RPN2 26S proteasome re 62.0 98 0.0021 35.0 11.8 97 474-584 549-647 (926)
322 COG5194 APC11 Component of SCF 60.9 7.1 0.00015 31.9 2.3 30 273-303 52-81 (88)
323 PF06416 DUF1076: Protein of u 60.2 5.4 0.00012 34.7 1.6 48 256-304 39-92 (113)
324 KOG2137 Protein kinase [Signal 59.8 64 0.0014 37.3 10.4 132 435-571 389-521 (700)
325 KOG1020 Sister chromatid cohes 59.7 1.4E+02 0.0031 37.6 13.7 143 394-545 816-959 (1692)
326 cd03567 VHS_GGA VHS domain fam 59.3 36 0.00077 31.3 7.0 70 559-628 39-115 (139)
327 KOG1967 DNA repair/transcripti 58.7 61 0.0013 38.5 10.1 146 476-622 867-1017(1030)
328 COG5098 Chromosome condensatio 58.4 63 0.0014 37.3 9.8 103 520-627 302-413 (1128)
329 cd03572 ENTH_epsin_related ENT 58.2 34 0.00075 30.7 6.5 71 560-630 40-120 (122)
330 KOG4185 Predicted E3 ubiquitin 58.1 9.4 0.0002 39.7 3.4 62 259-320 5-77 (296)
331 PF11865 DUF3385: Domain of un 58.1 74 0.0016 29.9 9.2 143 477-627 11-155 (160)
332 smart00504 Ubox Modified RING 58.0 4.7 0.0001 31.1 0.8 29 257-287 35-63 (63)
333 PF04564 U-box: U-box domain; 57.7 5.3 0.00011 32.3 1.1 34 256-291 38-71 (73)
334 PF01347 Vitellogenin_N: Lipop 56.9 1.8E+02 0.0039 33.5 14.1 129 397-542 434-585 (618)
335 KOG1940 Zn-finger protein [Gen 56.4 9.5 0.00021 39.1 2.9 43 257-300 158-204 (276)
336 PF05605 zf-Di19: Drought indu 56.0 6.6 0.00014 29.7 1.3 38 256-300 1-39 (54)
337 smart00638 LPD_N Lipoprotein N 55.0 3.7E+02 0.008 30.7 16.3 177 395-591 312-513 (574)
338 PF14726 RTTN_N: Rotatin, an a 54.8 1.4E+02 0.003 25.7 9.9 68 515-582 28-95 (98)
339 PF00790 VHS: VHS domain; Int 54.6 41 0.00089 30.8 6.7 73 351-423 41-118 (140)
340 KOG2032 Uncharacterized conser 54.1 2.2E+02 0.0048 31.7 12.8 225 404-629 268-531 (533)
341 KOG2025 Chromosome condensatio 54.0 1E+02 0.0022 35.7 10.6 110 434-550 84-194 (892)
342 smart00288 VHS Domain present 53.5 52 0.0011 29.9 7.1 70 559-628 38-110 (133)
343 KOG2956 CLIP-associating prote 51.8 3.8E+02 0.0082 29.8 17.8 179 353-546 287-477 (516)
344 PRK14707 hypothetical protein; 51.5 7.4E+02 0.016 33.1 20.1 271 353-628 206-487 (2710)
345 COG5116 RPN2 26S proteasome re 51.1 64 0.0014 36.3 8.3 97 516-627 550-648 (926)
346 PF04641 Rtf2: Rtf2 RING-finge 50.6 15 0.00032 37.6 3.4 35 257-291 34-69 (260)
347 KOG1991 Nuclear transport rece 50.2 5.5E+02 0.012 31.2 20.2 232 353-589 411-673 (1010)
348 PF00790 VHS: VHS domain; Int 49.9 36 0.00078 31.2 5.5 70 559-628 43-117 (140)
349 KOG2137 Protein kinase [Signal 49.1 99 0.0022 35.8 9.7 131 394-529 389-520 (700)
350 KOG1814 Predicted E3 ubiquitin 49.0 19 0.00042 38.6 3.9 35 255-289 182-219 (445)
351 COG5218 YCG1 Chromosome conden 48.9 93 0.002 35.3 9.1 110 393-509 90-200 (885)
352 PF10363 DUF2435: Protein of u 47.7 80 0.0017 26.8 6.8 72 519-591 5-76 (92)
353 KOG3002 Zn finger protein [Gen 47.5 17 0.00036 38.0 3.1 60 253-319 44-104 (299)
354 KOG2032 Uncharacterized conser 46.3 4.7E+02 0.01 29.3 20.0 150 352-505 258-415 (533)
355 PF10272 Tmpp129: Putative tra 44.4 15 0.00033 39.2 2.3 37 270-306 301-354 (358)
356 KOG2038 CAATT-binding transcri 44.0 5.9E+02 0.013 30.2 14.6 206 353-586 197-408 (988)
357 KOG4362 Transcriptional regula 43.8 11 0.00024 43.3 1.3 65 255-319 19-85 (684)
358 PRK11088 rrmA 23S rRNA methylt 43.2 11 0.00024 38.7 1.0 26 257-282 2-30 (272)
359 KOG0298 DEAD box-containing he 42.3 11 0.00024 45.9 1.0 44 255-299 1151-1195(1394)
360 COG5218 YCG1 Chromosome conden 42.0 1.5E+02 0.0032 33.8 9.3 71 516-586 90-160 (885)
361 KOG4231 Intracellular membrane 39.8 22 0.00049 39.2 2.7 64 483-546 335-399 (763)
362 KOG1941 Acetylcholine receptor 39.6 17 0.00037 38.6 1.7 43 257-299 365-412 (518)
363 PF08506 Cse1: Cse1; InterPro 39.3 5.2E+02 0.011 27.9 14.7 127 450-582 226-370 (370)
364 KOG1020 Sister chromatid cohes 39.2 4.1E+02 0.0089 33.9 13.1 106 435-547 816-922 (1692)
365 PRK06266 transcription initiat 38.9 37 0.0008 32.6 3.9 53 255-323 115-168 (178)
366 PF10521 DUF2454: Protein of u 38.9 2.6E+02 0.0055 28.9 10.4 71 476-546 119-203 (282)
367 PF14500 MMS19_N: Dos2-interac 38.6 4.5E+02 0.0097 26.9 16.9 215 399-629 4-237 (262)
368 PF14353 CpXC: CpXC protein 38.1 19 0.00041 32.4 1.6 47 257-303 1-49 (128)
369 PF12530 DUF3730: Protein of u 37.4 4.3E+02 0.0094 26.4 17.9 135 356-504 4-150 (234)
370 cd08329 CARD_BIRC2_BIRC3 Caspa 37.0 82 0.0018 26.8 5.3 57 32-97 6-62 (94)
371 PF11791 Aconitase_B_N: Aconit 36.9 75 0.0016 29.6 5.3 25 519-543 96-120 (154)
372 smart00638 LPD_N Lipoprotein N 36.1 7E+02 0.015 28.4 17.4 129 437-583 395-541 (574)
373 KOG2930 SCF ubiquitin ligase, 36.0 29 0.00064 29.8 2.3 27 274-301 80-106 (114)
374 KOG1943 Beta-tubulin folding c 36.0 9.2E+02 0.02 29.7 19.2 139 404-546 554-705 (1133)
375 PF11791 Aconitase_B_N: Aconit 35.8 76 0.0016 29.6 5.1 26 560-585 96-121 (154)
376 PF14225 MOR2-PAG1_C: Cell mor 35.4 5E+02 0.011 26.6 14.8 175 353-546 65-254 (262)
377 PF06012 DUF908: Domain of Unk 35.4 1.5E+02 0.0032 31.4 8.2 76 450-525 237-324 (329)
378 PF10367 Vps39_2: Vacuolar sor 35.3 12 0.00027 32.1 -0.0 37 249-285 70-108 (109)
379 cd00730 rubredoxin Rubredoxin; 35.1 17 0.00037 27.2 0.7 13 253-265 30-42 (50)
380 PF07800 DUF1644: Protein of u 34.6 15 0.00032 34.3 0.4 20 256-275 1-20 (162)
381 PF06685 DUF1186: Protein of u 33.8 3.9E+02 0.0085 27.2 10.4 73 515-598 71-153 (249)
382 PF08216 CTNNBL: Catenin-beta- 33.7 59 0.0013 28.5 3.9 43 368-411 62-104 (108)
383 PF05883 Baculo_RING: Baculovi 33.6 52 0.0011 30.0 3.6 45 257-302 26-79 (134)
384 PF14666 RICTOR_M: Rapamycin-i 33.5 5E+02 0.011 25.9 14.2 129 490-629 78-225 (226)
385 PF07814 WAPL: Wings apart-lik 33.2 1.9E+02 0.0042 31.0 8.7 90 479-568 24-116 (361)
386 KOG1832 HIV-1 Vpr-binding prot 33.2 2E+02 0.0044 34.3 8.9 173 379-560 586-787 (1516)
387 PF12830 Nipped-B_C: Sister ch 33.1 4.5E+02 0.0097 25.2 13.1 142 396-547 10-168 (187)
388 KOG1243 Protein kinase [Genera 32.3 4.6E+02 0.01 30.5 11.6 152 473-633 327-480 (690)
389 PLN02189 cellulose synthase 32.2 31 0.00067 41.7 2.5 46 258-303 35-87 (1040)
390 cd00197 VHS_ENTH_ANTH VHS, ENT 32.0 2.2E+02 0.0048 24.7 7.5 69 559-627 38-113 (115)
391 PF10521 DUF2454: Protein of u 32.0 3.6E+02 0.0079 27.7 10.3 69 436-504 120-202 (282)
392 PRK06424 transcription factor; 31.1 1.3E+02 0.0028 27.8 6.0 58 138-195 73-138 (144)
393 PF14663 RasGEF_N_2: Rapamycin 30.3 1.4E+02 0.003 26.4 5.8 39 518-556 9-47 (115)
394 PF08216 CTNNBL: Catenin-beta- 30.3 47 0.001 29.1 2.7 41 494-534 64-104 (108)
395 PF04499 SAPS: SIT4 phosphatas 30.2 3.6E+02 0.0078 30.2 10.4 111 516-630 20-150 (475)
396 PF12231 Rif1_N: Rap1-interact 30.2 4.2E+02 0.0091 28.5 10.7 132 448-585 59-202 (372)
397 TIGR00373 conserved hypothetic 30.1 30 0.00065 32.6 1.6 38 254-307 106-143 (158)
398 PF00301 Rubredoxin: Rubredoxi 30.0 20 0.00044 26.4 0.4 13 253-265 30-42 (47)
399 PF06012 DUF908: Domain of Unk 29.9 2.4E+02 0.0053 29.8 8.7 74 492-565 238-323 (329)
400 PF14631 FancD2: Fanconi anaem 29.9 1.1E+03 0.024 30.4 15.5 147 434-587 430-587 (1426)
401 PF12783 Sec7_N: Guanine nucle 29.4 3.9E+02 0.0084 24.9 9.2 82 510-594 66-152 (168)
402 COG5656 SXM1 Importin, protein 29.3 4E+02 0.0086 31.5 10.3 121 393-515 407-538 (970)
403 KOG3579 Predicted E3 ubiquitin 28.5 31 0.00067 35.1 1.5 42 256-297 267-316 (352)
404 cd00197 VHS_ENTH_ANTH VHS, ENT 28.2 3.8E+02 0.0081 23.2 8.3 71 351-421 36-113 (115)
405 cd08050 TAF6 TATA Binding Prot 28.0 3.1E+02 0.0068 29.2 9.1 101 354-464 180-297 (343)
406 cd03565 VHS_Tom1 VHS domain fa 27.5 4.4E+02 0.0096 24.1 8.9 73 351-423 37-115 (141)
407 COG1675 TFA1 Transcription ini 27.0 37 0.0008 32.5 1.6 50 255-320 111-161 (176)
408 smart00531 TFIIE Transcription 26.8 37 0.0008 31.5 1.6 39 255-305 97-136 (147)
409 KOG2114 Vacuolar assembly/sort 26.8 37 0.00081 39.8 1.9 43 254-300 837-880 (933)
410 KOG2676 Uncharacterized conser 26.2 75 0.0016 33.8 3.8 63 371-433 375-440 (478)
411 PF04388 Hamartin: Hamartin pr 25.2 1.1E+03 0.023 27.8 13.5 134 394-546 4-140 (668)
412 KOG1949 Uncharacterized conser 25.0 1.2E+03 0.025 27.7 12.8 142 439-586 178-330 (1005)
413 PLN03076 ARF guanine nucleotid 25.0 3.9E+02 0.0085 35.1 10.5 134 405-544 1148-1297(1780)
414 PF08389 Xpo1: Exportin 1-like 24.5 3.7E+02 0.008 23.9 7.9 103 476-582 26-148 (148)
415 PF12830 Nipped-B_C: Sister ch 23.9 2.6E+02 0.0056 26.9 7.0 66 518-591 9-78 (187)
416 PF14205 Cys_rich_KTR: Cystein 23.8 51 0.0011 25.0 1.5 10 258-267 5-14 (55)
417 PRK00420 hypothetical protein; 23.5 39 0.00084 29.9 1.0 28 258-303 24-51 (112)
418 PLN02436 cellulose synthase A 22.9 57 0.0012 39.7 2.5 44 259-303 38-89 (1094)
419 PF07191 zinc-ribbons_6: zinc- 22.2 8 0.00017 31.0 -3.2 42 257-304 1-42 (70)
420 PF14631 FancD2: Fanconi anaem 22.1 7.7E+02 0.017 31.8 12.2 109 394-507 431-544 (1426)
421 PHA02862 5L protein; Provision 22.0 66 0.0014 29.6 2.2 56 260-322 5-66 (156)
422 cd03565 VHS_Tom1 VHS domain fa 21.9 4.4E+02 0.0095 24.1 7.7 71 559-629 39-115 (141)
423 PHA02825 LAP/PHD finger-like p 21.9 94 0.002 29.2 3.2 47 257-304 8-60 (162)
424 cd08050 TAF6 TATA Binding Prot 21.7 8.3E+02 0.018 26.0 10.9 110 477-586 211-339 (343)
425 KOG4231 Intracellular membrane 21.6 62 0.0014 35.9 2.3 63 566-628 336-398 (763)
426 COG3813 Uncharacterized protei 21.6 92 0.002 25.0 2.6 34 277-313 29-62 (84)
427 COG5220 TFB3 Cdk activating ki 21.0 60 0.0013 32.3 1.8 44 257-300 10-61 (314)
428 KOG1812 Predicted E3 ubiquitin 20.9 69 0.0015 34.8 2.5 33 257-289 146-182 (384)
429 PF07923 N1221: N1221-like pro 20.6 2.2E+02 0.0049 29.5 6.2 55 350-404 58-126 (293)
430 PF14663 RasGEF_N_2: Rapamycin 20.5 2.4E+02 0.0053 24.8 5.5 37 559-596 9-45 (115)
431 PLN02638 cellulose synthase A 20.3 60 0.0013 39.5 2.0 44 259-303 19-70 (1079)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=8.4e-29 Score=298.98 Aligned_cols=281 Identities=24% Similarity=0.324 Sum_probs=254.1
Q ss_pred CHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcc
Q 006669 350 DVVAIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYEN 426 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~ 426 (636)
....+..+++.|+++ +++.++.|+..|+.+++.+++||..|++ .|+||.|+.+|++++..++++|+.+|.||+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 456799999999977 7899999999999999999999999997 7999999999999999999999999999999999
Q ss_pred hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC---CchhHHHH-hcCchHHHHhhhccCCH---HHHHHHHHH
Q 006669 427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL---DENKIIIG-ASGAIPALVDLLQNGST---RGRKDAATA 499 (636)
Q Consensus 427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~-~~g~i~~Lv~LL~~~~~---~~k~~A~~a 499 (636)
++..|+..|+|++|+++|++|+++++++|+++|++|+.. ++++..|+ ..|++|+|++++++++. -.+..++.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 44565655 56999999999999853 245667899
Q ss_pred HHhhhhccchHHH-HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCC-HHHHH
Q 006669 500 LFNLCIYMGNKGR-AVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGL-PRNKE 576 (636)
Q Consensus 500 L~nL~~~~~n~~~-lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke 576 (636)
|+|||.+++++.+ ++++|+||.|+++|.++++.+++.|+.+|.+++.+ ++++..+++.|+||.|+++|++++ +.+|+
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999999765 57999999999999999999999999999988875 779999999999999999998754 68999
Q ss_pred HHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCC---------HHHHHHHHHHHHHhhcc
Q 006669 577 NAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGT---------ERAKRKATSLLEHLRKL 630 (636)
Q Consensus 577 ~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~---------~~~k~kA~~lL~~l~~~ 630 (636)
+|+++|.+||.++++++..+++.|+++.|+.++.+.+ ...++.|.|+|.+|++.
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999997544 34589999999999873
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=5.9e-27 Score=283.14 Aligned_cols=283 Identities=25% Similarity=0.317 Sum_probs=251.8
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK 428 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k 428 (636)
.+.++++.|+++|++++.+.|+.|++.|+++++.+++++..|+++|+||+|+++|++++..++++|+++|.||+.+++++
T Consensus 443 i~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi 522 (2102)
T PLN03200 443 GGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI 522 (2102)
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999977665
Q ss_pred HH-HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh-------------------------------------H
Q 006669 429 GL-IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK-------------------------------------I 470 (636)
Q Consensus 429 ~~-I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~-------------------------------------~ 470 (636)
.. +.++|+|++|+++|++++++.+++|+++|++|+...++. .
T Consensus 523 r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 523 RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 55 447899999999999999999999999999996332211 1
Q ss_pred HHH-hcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc--
Q 006669 471 IIG-ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-- 546 (636)
Q Consensus 471 ~i~-~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-- 546 (636)
... ..|+++.|+++++++++++++.|+++|.|++.++ +++..++..|+|++|+.+|.+.+.+.+..|+++|.+|+.
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 111 2489999999999999999999999999998765 567889999999999999999999999999999999996
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 006669 547 NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEH 626 (636)
Q Consensus 547 ~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 626 (636)
..+++..+++.|+|++|+++|.+.+...++.|+.+|.+++. .++....+...|++++|+.++++|+++.|+.|+++|..
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~ 761 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQ 761 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 44556678899999999999999999999999999999998 45677888899999999999999999999999999999
Q ss_pred hhcccc
Q 006669 627 LRKLPQ 632 (636)
Q Consensus 627 l~~~~~ 632 (636)
|++...
T Consensus 762 L~~~~~ 767 (2102)
T PLN03200 762 LLKHFP 767 (2102)
T ss_pred HHhCCC
Confidence 887653
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3e-26 Score=230.07 Aligned_cols=279 Identities=24% Similarity=0.384 Sum_probs=260.4
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK 428 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k 428 (636)
.+..++..|+..+.+...++|..++.+|.+|+.- ++||..|+..|++.+|.++-++.|..+|.++..+|+||....+|+
T Consensus 123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR 201 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR 201 (550)
T ss_pred EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh
Confidence 3445677888888888889999999999999975 789999999999999999888999999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcC--chHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASG--AIPALVDLLQNGSTRGRKDAATALFNLCIY 506 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~ 506 (636)
..++.+|++|.||.+++++++.++++++.++.+++.+..++..+++.+ .++.||+++.++++++|-.|..||.||+..
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd 281 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD 281 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999986 999999999999999999999999999999
Q ss_pred cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q 006669 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSL 585 (636)
Q Consensus 507 ~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L 585 (636)
.+....++++|.+|.++++|+++.....-..+.++.|++-+|-+...|.++|++.+||.+|+.+ +++.|.+|+.+|++|
T Consensus 282 t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnL 361 (550)
T KOG4224|consen 282 TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNL 361 (550)
T ss_pred chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHH
Confidence 9999999999999999999999888888999999999999999999999999999999999976 467999999999999
Q ss_pred hccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
+..+..++..+.+.|+++.|.+|+.+|.-.++..-...+..|.
T Consensus 362 Aasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 362 AASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred hhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9988899999999999999999999999999887777766653
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-24 Score=217.59 Aligned_cols=276 Identities=25% Similarity=0.331 Sum_probs=253.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
+++..+.++-++.+..+|+.|...|.++.. +.+||+.++.+|++|.||.+++++|..+|+.+.+++.|++-+..+++.+
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 457778887778888999999999999984 7899999999999999999999999999999999999999999999999
Q ss_pred HHhC--ChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch
Q 006669 432 MLAG--AIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN 509 (636)
Q Consensus 432 ~~~G--~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n 509 (636)
++.| .++.||.++.++++.++..|.-+|.+|+.+.++...|.++|.+|.+|++|++..-......+.++.|++.++.|
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 9877 99999999999999999999999999999999999999999999999999988777777888999999999999
Q ss_pred HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 510 KGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
-..++++|.+.+||++|.- ++.+++-.|+.+|+||+. ...++..|.+.|+||.+.+++..++-..++.--+++..|+-
T Consensus 326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 9999999999999999976 566699999999999998 66789999999999999999999988888887777777776
Q ss_pred cChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 588 RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 588 ~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
+ ...+..+.+.|.++.|..+..+.+..++.+|+.+|-+++.
T Consensus 406 ~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 406 N-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred c-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 4 3567788899999999999999999999999999999975
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-23 Score=224.58 Aligned_cols=278 Identities=20% Similarity=0.272 Sum_probs=248.1
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669 352 VAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKG 429 (636)
Q Consensus 352 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~ 429 (636)
+.++.+|+.|.. .++..|.+|+++|.+++.++.+.-..++++|++|.++.+|.+++..+++.|+++|.|++. .+..+.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 679999999974 458999999999999999999999999999999999999999999999999999999999 456688
Q ss_pred HHHHhCChHHHHHHHhcCcH-HHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 430 LIMLAGAIPSIVQILRAGSM-EARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
.+.+.|++++|+.++...+. ....+++|+|.||+....-...+.. ..++|.|..++.+.++.+..+|+|||.+|+-+.
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 88999999999999988764 7889999999999987643333333 378999999999999999999999999999655
Q ss_pred -chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Q 006669 508 -GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLIVLLR-TGLPRNKENAAAILLS 584 (636)
Q Consensus 508 -~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~ 584 (636)
+.-+.+++.|+++.|+++|...+..++.-|+.++.|++...+.+ +.++..|++|.|..++. +.....|..|+|++.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 45666788999999999999888888899999999998876654 56788999999999998 4556789999999999
Q ss_pred hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
++.++.+..+.+++.|.+|.|+.+++++.-+.|+.|+|++.++..
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999998853
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.2e-22 Score=211.40 Aligned_cols=285 Identities=26% Similarity=0.300 Sum_probs=247.6
Q ss_pred cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCh-HHHHHHHHHHHHhhhCc
Q 006669 347 VSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDV-MTQEHAVTAILNLSIYE 425 (636)
Q Consensus 347 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~-~~~e~Av~aL~nLs~~~ 425 (636)
...+.++++.++.++.+++.+++++|+++|.+++.+++..|..+.+.|++++|+.++...+. ....++.++|.||+.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 44567789999999999999999999999999999999999999999999999999987665 78899999999999854
Q ss_pred chHHHHH-HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH-HhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669 426 NNKGLIM-LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII-GASGAIPALVDLLQNGSTRGRKDAATALFNL 503 (636)
Q Consensus 426 ~~k~~I~-~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL 503 (636)
.....+. -..++|.|..++++.++++...|+|+|.+|+....-+..+ .+.|.++.||++|...+..++.-|++++.|+
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 3222222 2567999999999999999999999999999766555554 5669999999999999988999999999999
Q ss_pred hhccch-HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 006669 504 CIYMGN-KGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA 580 (636)
Q Consensus 504 ~~~~~n-~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~ 580 (636)
....+. .+.++..|+++.|..++.. ....++.+|++++.|++. +.+-.++++++|.+|.|+.+|+++.-++|..|++
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 887766 4556789999999999984 566699999999999987 5667889999999999999999999999999999
Q ss_pred HHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 581 ILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 581 ~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
++.|++.++. +....+++.|.+++|+.++...+.+.-..+...|.+|-+..
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 9999987654 56667899999999999998888888899999999886643
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=2.6e-20 Score=186.16 Aligned_cols=283 Identities=22% Similarity=0.233 Sum_probs=246.6
Q ss_pred ccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC--hHHHHHHHHHHHHhhh
Q 006669 346 DVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD--VMTQEHAVTAILNLSI 423 (636)
Q Consensus 346 ~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d--~~~~e~Av~aL~nLs~ 423 (636)
.+..+.+++|.++++|.+++.+++++|+++|.+++.+++..|..+.+.|++.+++.+|.+.- ..+..++.+.|.||+.
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 35567789999999999999999999999999999999999999999999999999997644 4788999999999997
Q ss_pred --Cc-chHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH-HhcCchHHHHhhhccCCHHHHHHHHHH
Q 006669 424 --YE-NNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII-GASGAIPALVDLLQNGSTRGRKDAATA 499 (636)
Q Consensus 424 --~~-~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~LL~~~~~~~k~~A~~a 499 (636)
++ .+...|. .++|.|.+++.+-++++...|+|++.+|+..+..+..+ ...|..+.||++|.+.+..++.-|++.
T Consensus 231 GknP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~ 308 (526)
T COG5064 231 GKNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRS 308 (526)
T ss_pred CCCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence 33 3344443 35899999999999999999999999999887666554 455999999999999988889999999
Q ss_pred HHhhhhccch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH
Q 006669 500 LFNLCIYMGN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKEN 577 (636)
Q Consensus 500 L~nL~~~~~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~ 577 (636)
+.|+....+. .+.++..|+++.+-.+|+++...++.+|++.+.|+.. +.+..+++++++.+|+|+++|.+..-.+|..
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 9999877655 5567789999999999999888999999999999966 6677888999999999999999888899999
Q ss_pred HHHHHHHhhccC---hHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 578 AAAILLSLCKRD---TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 578 A~~~L~~L~~~~---~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
|+|++.|...++ |+....+++.|++++|+.++...+.++-+.|...++++-+.
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 999999987654 57778889999999999999888888888888888877554
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.85 E-value=6.3e-21 Score=190.46 Aligned_cols=281 Identities=19% Similarity=0.228 Sum_probs=242.0
Q ss_pred CCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cc
Q 006669 349 GDVVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-EN 426 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~ 426 (636)
.+.+.++.+|+++.+. ..-.+.+|++.|.+++.........++++|+||.++.+|.+.+..+++.++++|.|++.+ +.
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 4567899999999544 444578999999999988777777888999999999999999999999999999999985 55
Q ss_pred hHHHHHHhCChHHHHHHHhcCc--HHHHHHHHHHHHHccCCCchhHHH-HhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669 427 NKGLIMLAGAIPSIVQILRAGS--MEARENAAATLFSLSLLDENKIII-GASGAIPALVDLLQNGSTRGRKDAATALFNL 503 (636)
Q Consensus 427 ~k~~I~~~G~I~~Lv~lL~~~~--~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL 503 (636)
.+..+.+.|++.+++.++.+.- .....++.|+|.||+....-..-- .-..++|.|..|+...++++..+|+||+..|
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 6888889999999999998763 578899999999998653211111 1124789999999999999999999999999
Q ss_pred hhccc-hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHHHHHcCCCHHHHHHHHHH
Q 006669 504 CIYMG-NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLIVLLRTGLPRNKENAAAI 581 (636)
Q Consensus 504 ~~~~~-n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~ 581 (636)
+-.+. ....+++.|+.+.|+++|..++..+..-|+....|+....+.+ +.+++.|+++.+-.+|.+.....|..|+|+
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 87664 4556778999999999999999999999999999999866655 466789999999999988888999999999
Q ss_pred HHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 582 LLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
+.|++.++.+..+.+++.+.+|+|+.++.+..-..|+.|.|++.+...
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999988753
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.83 E-value=4.6e-21 Score=156.36 Aligned_cols=72 Identities=51% Similarity=0.934 Sum_probs=63.6
Q ss_pred CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcc
Q 006669 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHN 325 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~ 325 (636)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++...+++||..+|+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999888999999999999999999999999999999874
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.76 E-value=1.3e-16 Score=180.37 Aligned_cols=255 Identities=21% Similarity=0.245 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHh
Q 006669 366 VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILR 445 (636)
Q Consensus 366 ~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~ 445 (636)
....+.++..|.+++. ++.+...+...|.|+.|+++|.+++.++...+++.|.+||.+.+||..|.+.|+|+.|++++.
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3445567788999995 778899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHH
Q 006669 446 AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKM 525 (636)
Q Consensus 446 ~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~l 525 (636)
+++.+.+..++.+|+|||++++.|..|++.|.+|.|+.+|.+++ .+..++..|+|||..+++|..+...+++|.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999998654 4566899999999999999999999999999998
Q ss_pred hcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHH
Q 006669 526 LTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604 (636)
Q Consensus 526 L~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~ 604 (636)
+.. ++..+...+++++.||+.++.+.+.|.+.++++.|++....... .....++.|++.+++.....+. +.+..
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~ 494 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGD 494 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHH
Confidence 755 55556667889999999999999999999999999987654332 1245789999998865555444 46888
Q ss_pred HHHhhhcC-CHHHHHHHHHHHHHhh
Q 006669 605 LTELTKSG-TERAKRKATSLLEHLR 628 (636)
Q Consensus 605 L~~Ll~~g-~~~~k~kA~~lL~~l~ 628 (636)
|+.++.++ ++...-.+..+|.+|.
T Consensus 495 L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 495 LAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 88888775 5666777888888774
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.75 E-value=3.7e-16 Score=176.69 Aligned_cols=279 Identities=22% Similarity=0.284 Sum_probs=223.5
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG 429 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~ 429 (636)
.++.++.|++.|.+++.+....++..|++|+- ..+|+..+.+.|+|+.|++++.+++...+..++.+|.|||.+++.+.
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 35679999999999999999999999999996 57899999999999999999999999999999999999999999999
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccc
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~ 508 (636)
.|++.|++|.|+.+|.+++ .+..+..+|.+||.++++|..+...+++|.+++++-++ ++++...++.++.||+.++.
T Consensus 367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 9999999999999998654 55679999999999999999999899999999987654 45566667777777777776
Q ss_pred hHHHHHHhchHHHHHHHh-------------------------------------cC-CCHHHHHHHHHHHHHH------
Q 006669 509 NKGRAVRAGIISALLKML-------------------------------------TD-SRNCMVDEALTILSVL------ 544 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL-------------------------------------~~-~~~~~~~~Al~~L~~L------ 544 (636)
|...+.+.|+++.|++.. .. .+++..-+++++|+||
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld 524 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD 524 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence 666666655555444321 11 1223333455555555
Q ss_pred --------------------------------------hcChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHH
Q 006669 545 --------------------------------------ASNPEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLS 584 (636)
Q Consensus 545 --------------------------------------a~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~ 584 (636)
|..+.+...+.+.|.++.|+++|... +.+..-..+.++..
T Consensus 525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 34444556667889999999999864 46677778888888
Q ss_pred hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
+..+.......+.+.+++..|+.++++.++.+++-|..+|..+..+.
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 88876544444456889999999999999999999999999987654
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.68 E-value=1.1e-15 Score=169.03 Aligned_cols=282 Identities=23% Similarity=0.247 Sum_probs=228.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh---CcchH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI---YENNK 428 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~---~~~~k 428 (636)
..++..+.+|.+.++..|-.|+..|..++..+...|..+.+.|+|+.||.+|.+.+.++|.+|+.+|.||+. .++||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 357889999999999999999999999999999999999999999999999999999999999999999987 34689
Q ss_pred HHHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC--------------CHHHH
Q 006669 429 GLIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG--------------STRGR 493 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~--------------~~~~k 493 (636)
..|.+.++|+.++++|+. ++.+++++...+|+||++.|..|..|... ++..|.+.+-.. ...+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999997 69999999999999999998888777654 445555443211 14567
Q ss_pred HHHHHHHHhhhh-ccchHHHHHH-hchHHHHHHHhc------CCCHHHHHHHHHHHHHHhcChh------h---------
Q 006669 494 KDAATALFNLCI-YMGNKGRAVR-AGIISALLKMLT------DSRNCMVDEALTILSVLASNPE------A--------- 550 (636)
Q Consensus 494 ~~A~~aL~nL~~-~~~n~~~lv~-~g~v~~Lv~lL~------~~~~~~~~~Al~~L~~La~~~~------~--------- 550 (636)
.++..+|.|++. ..+.|.++.+ .|.|..|+..+. +.+...+++|+.+|.||+-.-+ .
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999987 5678999988 899999999886 2577889999999999974211 0
Q ss_pred ------------------HH---------------------HHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhccCh
Q 006669 551 ------------------KI---------------------AIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 551 ------------------~~---------------------~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
+. ..+...+|..-+.+|. +.++.+.|.++.+|-||+....
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 00 0111122333233444 4568899999999999998654
Q ss_pred ----HHHHHH-HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcccccc
Q 006669 591 ----ENLACI-SRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQ 634 (636)
Q Consensus 591 ----~~~~~i-~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~~ 634 (636)
..+..+ .++.+.++|++|++++++++.+.+..+|++|++-..++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk 600 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK 600 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh
Confidence 334444 67899999999999999999999999999998765444
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=7.3e-14 Score=140.27 Aligned_cols=276 Identities=17% Similarity=0.229 Sum_probs=233.4
Q ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcch-
Q 006669 352 VAIEALVRKLS--SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENN- 427 (636)
Q Consensus 352 ~~i~~Lv~~L~--s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~- 427 (636)
.+...++..|. ..+.+.....+..++.-+..++.||..+.+.+..+.+...|.. +...+...+.+++.-|..+++.
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 34666777764 4566777778888888888899999999999999999977754 4446788888999988765432
Q ss_pred ---------HHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCC----HHHH
Q 006669 428 ---------KGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGS----TRGR 493 (636)
Q Consensus 428 ---------k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~----~~~k 493 (636)
...|...|++..|++.++-+ +|.....+..+|..|+..++.+..|.+.|++..|+.++.+.+ ....
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 35577788999999999987 688899999999999999999999999999999999998743 2345
Q ss_pred HHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCC
Q 006669 494 KDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTG 570 (636)
Q Consensus 494 ~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~ 570 (636)
+.++..|..|+.+++++..+++.|+.+.++.++.. .++.+.+.++.++..||- .|+.-..+++.|+-...++-|+..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 77888899999999999999999999999999843 788999999999999986 688888889999999999999854
Q ss_pred --CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 571 --LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 571 --s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
....+.+|++.+.|+..++.+++..++.. +++.|+...+..++.+...|..+||-|-
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 36788999999999999998888887776 5788888888899999999999999874
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.63 E-value=1.2e-14 Score=161.11 Aligned_cols=283 Identities=23% Similarity=0.255 Sum_probs=225.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcch
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD--NRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENN 427 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~ 427 (636)
.+.|+.||.+|.+.+.++|..|+.+|++|...+.. |+..|.+.++|+.++++|+. .|.++++....+|+||+.++..
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 45799999999999999999999999999876555 99999999999999999986 7999999999999999999888
Q ss_pred HHHHHHhCChHHHHHHHh---cC-----------cHHHHHHHHHHHHHccC-CCchhHHHHhc-CchHHHHhhhcc----
Q 006669 428 KGLIMLAGAIPSIVQILR---AG-----------SMEARENAAATLFSLSL-LDENKIIIGAS-GAIPALVDLLQN---- 487 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~---~~-----------~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~-g~i~~Lv~LL~~---- 487 (636)
|..|+.. ++..|..-+- +| +.++..+++.+|.|++. ..+.+.++.+. |.|..|+..++.
T Consensus 354 K~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~ 432 (717)
T KOG1048|consen 354 KMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK 432 (717)
T ss_pred HHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence 8877664 3444443321 10 13566788888888877 45667777776 777777766551
Q ss_pred --CCHH--------------------------------------------------------------------------
Q 006669 488 --GSTR-------------------------------------------------------------------------- 491 (636)
Q Consensus 488 --~~~~-------------------------------------------------------------------------- 491 (636)
.+..
T Consensus 433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e 512 (717)
T KOG1048|consen 433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE 512 (717)
T ss_pred ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence 1122
Q ss_pred ----------------------HHHHHHHHHHhhhhccc-----hHHHH-HHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006669 492 ----------------------GRKDAATALFNLCIYMG-----NKGRA-VRAGIISALLKMLTDSRNCMVDEALTILSV 543 (636)
Q Consensus 492 ----------------------~k~~A~~aL~nL~~~~~-----n~~~l-v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~ 543 (636)
+.+.++.||.||+.... .+..+ .+..+.+.|+++|..++..++..+..+|.|
T Consensus 513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRN 592 (717)
T ss_pred eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhh
Confidence 33455566666654331 12223 345577899999999999999999999999
Q ss_pred HhcChhhHHHHHhcCcHHHHHHHHcCCC------HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC-CHHH
Q 006669 544 LASNPEAKIAIVKASTIPVLIVLLRTGL------PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG-TERA 616 (636)
Q Consensus 544 La~~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g-~~~~ 616 (636)
|+.++.++..|. .++++.|++.|..+. +.+-..++.+|+++...+..+...+.+.+++++|+.+..+. ++++
T Consensus 593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 999999999998 689999999998532 56777889999999999999999999999999999998774 6799
Q ss_pred HHHHHHHHHHhhccccccc
Q 006669 617 KRKATSLLEHLRKLPQLQQ 635 (636)
Q Consensus 617 k~kA~~lL~~l~~~~~~~~ 635 (636)
-+.|..+|..|+.+.+++.
T Consensus 672 ~kaAs~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 672 FKAASSVLDVLWQYKELHF 690 (717)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999998887753
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.62 E-value=9e-15 Score=167.27 Aligned_cols=260 Identities=23% Similarity=0.255 Sum_probs=221.8
Q ss_pred HHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC---------CC---hHHHHHHHHHHHHhhh-CcchHHHHHH-hCC
Q 006669 371 AAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT---------DD---VMTQEHAVTAILNLSI-YENNKGLIML-AGA 436 (636)
Q Consensus 371 ~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s---------~d---~~~~e~Av~aL~nLs~-~~~~k~~I~~-~G~ 436 (636)
.|+..|-.++. ++++|..+.+.|++..+-.||.- .+ ..++..|..+|.||.. +..||..+.. .|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 67777777776 68999999999998888887741 11 3578899999999998 6678887765 799
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHH-HhcCchHHHHhh-hccCCHHHHHHHHHHHHhhhhc-cchHHH
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIII-GASGAIPALVDL-LQNGSTRGRKDAATALFNLCIY-MGNKGR 512 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i-~~~g~i~~Lv~L-L~~~~~~~k~~A~~aL~nL~~~-~~n~~~ 512 (636)
+..+|..|.+...+..+--+.+|.||+... .|-..+ .+.|-+..|+.. |+.......+..+.||+||+.+ .+||..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 999999999998899999999999999764 354444 445999998876 5555667889999999999865 489999
Q ss_pred HHH-hchHHHHHHHhcC----CCHHHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669 513 AVR-AGIISALLKMLTD----SRNCMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583 (636)
Q Consensus 513 lv~-~g~v~~Lv~lL~~----~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 583 (636)
|.+ .|++..||.+|.. ..-.+++.|-+||.|+++ +++.|+.+.+.+++..|++.|++.+-.+.-+++.+||
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW 555 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW 555 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence 998 8999999999964 345788999999999876 6778888899999999999999999889999999999
Q ss_pred HhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 584 SLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 584 ~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
||...+++..+.+++.|+++-|..|+++.+.-.-+-++.+|+++-.++
T Consensus 556 NLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 556 NLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999888888888888886554
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2.9e-13 Score=135.97 Aligned_cols=268 Identities=21% Similarity=0.269 Sum_probs=223.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--CCChHHHHHHHHHHHHhhh-CcchHHHHHHh
Q 006669 358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT--TDDVMTQEHAVTAILNLSI-YENNKGLIMLA 434 (636)
Q Consensus 358 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~--s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~ 434 (636)
...-.+++.....+++..|..+....|+ +.++-+...++.+|. .++.++....+..+..-+. ++.||..+++.
T Consensus 113 ~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~ 188 (461)
T KOG4199|consen 113 LELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMEL 188 (461)
T ss_pred HHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3334567777888999999999876654 455667888899885 3556666667777776666 89999999999
Q ss_pred CChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCch----------hHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHh
Q 006669 435 GAIPSIVQILRA-GSMEARENAAATLFSLSLLDEN----------KIIIGASGAIPALVDLLQNG-STRGRKDAATALFN 502 (636)
Q Consensus 435 G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~----------~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~n 502 (636)
++++.+...|.. |-..+...+.+++..|..+++. ...|+..|++..|++.++-+ +|.....+..+|..
T Consensus 189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKA 268 (461)
T ss_pred hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 999999977754 5456778889999998877754 44667778899999999876 67888899999999
Q ss_pred hhhccchHHHHHHhchHHHHHHHhcC-CCH---HHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc--CCCHHHHH
Q 006669 503 LCIYMGNKGRAVRAGIISALLKMLTD-SRN---CMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR--TGLPRNKE 576 (636)
Q Consensus 503 L~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~---~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~--~~s~~~ke 576 (636)
|+..++.+..+.+.|++..|++++.+ ... .+...++..|..|+.+.+.+..|++.|+.+.++.++. +.+|.+-+
T Consensus 269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~ 348 (461)
T KOG4199|consen 269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQ 348 (461)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999977 333 3556789999999999999999999999999998775 46799999
Q ss_pred HHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhc
Q 006669 577 NAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG--TERAKRKATSLLEHLRK 629 (636)
Q Consensus 577 ~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g--~~~~k~kA~~lL~~l~~ 629 (636)
.+..++.-||-..|++...+++.|+-...++-++.. ...++++|.+++|+|..
T Consensus 349 ~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 349 EVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888764 45679999999999854
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.60 E-value=5.9e-16 Score=122.83 Aligned_cols=63 Identities=54% Similarity=0.963 Sum_probs=60.1
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHH
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQW 320 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w 320 (636)
+|.||||+++|+|||+.+|||+|||.+|.+|+.. +.+||.|+++++..++.||..+|+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5889999999999999999999999999999986 67899999999999999999999999988
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=1.8e-12 Score=131.09 Aligned_cols=194 Identities=22% Similarity=0.272 Sum_probs=170.9
Q ss_pred HhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh
Q 006669 391 ADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK 469 (636)
Q Consensus 391 ~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~ 469 (636)
.+++.+..|+.+|.. .|+.+++.|..++.|.+.++.++..|.+.|+++.+..+|.++++.+++.|+.+|.|++...+|+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 556778899999985 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchHHHHhhhccC--CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669 470 IIIGASGAIPALVDLLQNG--STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 470 ~~i~~~g~i~~Lv~LL~~~--~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 547 (636)
..|-. .++.+.+.+.+. +..++..++++|.||+..++.+..+. +.++.++++|..++..++..++.+|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88754 577777765554 56888999999999998877766664 4799999999999999999999999999999
Q ss_pred hhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcc
Q 006669 548 PEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKR 588 (636)
Q Consensus 548 ~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~ 588 (636)
|.....++.+.++..++.++... +...-..++.+..|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875 566778888888888653
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=2.9e-12 Score=129.52 Aligned_cols=194 Identities=21% Similarity=0.285 Sum_probs=172.9
Q ss_pred CCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch
Q 006669 349 GDVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN 427 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~ 427 (636)
.+...++.|+..|++ .++.+++.|+..+.+.+. .+.++..|.+.|+++.+.++|.++++.+++.|+.+|.||+.+.+|
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 345678999999984 689999999999999875 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669 428 KGLIMLAGAIPSIVQILRAG--SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI 505 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~ 505 (636)
+..|-. .++.+++...+. +.+.+..+.+.|.+|+..+++...+. +.++.++.+|..|+..+|..++++|.||+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 988743 578888766554 67899999999999999988877765 479999999999999999999999999999
Q ss_pred ccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC
Q 006669 506 YMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASN 547 (636)
Q Consensus 506 ~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~ 547 (636)
++.+...++.++++..++.++.. .+.++...++.+..||..+
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999976 5788889999999999774
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.38 E-value=5.6e-12 Score=144.94 Aligned_cols=227 Identities=22% Similarity=0.217 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch-HHHHHHhCChHHHHH
Q 006669 366 VEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN-KGLIMLAGAIPSIVQ 442 (636)
Q Consensus 366 ~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~-k~~I~~~G~I~~Lv~ 442 (636)
...++.|...|-+|...+..|+..+... |++..+|..|.+...+++.-...+|.||++ .+.| |+.+-+.|-+..|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 3467889999999999999999988764 999999999998777888888899999999 3444 666777899999988
Q ss_pred H-HhcCcHHHHHHHHHHHHHccCC-CchhHHHHhc-CchHHHHhhhccC----CHHHHHHHHHHHHhhhh----ccchHH
Q 006669 443 I-LRAGSMEARENAAATLFSLSLL-DENKIIIGAS-GAIPALVDLLQNG----STRGRKDAATALFNLCI----YMGNKG 511 (636)
Q Consensus 443 l-L~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~----~~~n~~ 511 (636)
. |+..........+.+||||+.. .+||..|..- |++..||.+|.-. +..+.+.|-+.|.|.+. +.+.|+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 6 5555667778889999999866 6799999987 9999999999743 45677888889998754 456688
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
.+.+.+.+..|++.|++.+-.++.+++++||||+. +++.++.+++.|+|+.|..++++.+..+-+-++++|.||..+.+
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 88889999999999999999999999999999976 78899999999999999999999999999999999999987765
Q ss_pred HH
Q 006669 591 EN 592 (636)
Q Consensus 591 ~~ 592 (636)
..
T Consensus 605 Ak 606 (2195)
T KOG2122|consen 605 AK 606 (2195)
T ss_pred hh
Confidence 43
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.37 E-value=2.5e-10 Score=127.58 Aligned_cols=274 Identities=18% Similarity=0.202 Sum_probs=218.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
...+.|...|.++++.++..+++.|.++..++......+.+.+.++.++.++.++|..+...|+.+|.+|+.++..-..+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 45788899999999999999999999999887776777788899999999999999999999999999999988887788
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK 510 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~ 510 (636)
...+.+..|..++...+..+|..+..++.+++..++. ...+...|.++.++..+.+.+.-++.+++..|..|+..+.+.
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~ 236 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL 236 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence 8888899999999887888899999999999876554 455556699999999999988889999999999999988999
Q ss_pred HHHHHhchHHHHHHHhcCC--CH---H-HHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669 511 GRAVRAGIISALLKMLTDS--RN---C-MVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~~--~~---~-~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 583 (636)
..+.+.|+++.|+.++.+. ++ . +.--.+....+++.. |..... .-..++..|.+++.+.++..+..|..++.
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 9999999999999999652 22 1 222334566667764 221111 11234566667777888999999999999
Q ss_pred HhhccChHHHHHH-HH-cCC----hHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 584 SLCKRDTENLACI-SR-LGA----VIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 584 ~L~~~~~~~~~~i-~~-~G~----i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
.+|+.. +....+ .. .+. +...-....+|+...|.++...|..+
T Consensus 316 ~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 316 QIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 999744 444444 33 334 44444455668888999999988887
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.23 E-value=8.9e-10 Score=114.35 Aligned_cols=283 Identities=16% Similarity=0.139 Sum_probs=217.1
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC----CC---hHHHHHHHHHHHHh
Q 006669 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT----DD---VMTQEHAVTAILNL 421 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s----~d---~~~~e~Av~aL~nL 421 (636)
.+.+.++.|.+..+|++.++-.+..+.|.+.+..+.++|..+.+.|+-..++..|+. ++ .+...-+...|.|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 455678889999999999999999999999999999999999999997777776653 33 24445566778887
Q ss_pred hh-CcchHHHHHHhCChHHHHHHHhcC--c--------------------------------------------HHHHHH
Q 006669 422 SI-YENNKGLIMLAGAIPSIVQILRAG--S--------------------------------------------MEAREN 454 (636)
Q Consensus 422 s~-~~~~k~~I~~~G~I~~Lv~lL~~~--~--------------------------------------------~e~~~~ 454 (636)
.. +++.+.+.++.|+++.|...+.-+ + +...+.
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 76 567788899999988776665221 1 122223
Q ss_pred HHHHHHHccCCCchhHHHHhcCchHHHHhhhccC-CHHHH-------HHHHHHHHhhhhccchHHHHHHhc-hHHHHHHH
Q 006669 455 AAATLFSLSLLDENKIIIGASGAIPALVDLLQNG-STRGR-------KDAATALFNLCIYMGNKGRAVRAG-IISALLKM 525 (636)
Q Consensus 455 Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k-------~~A~~aL~nL~~~~~n~~~lv~~g-~v~~Lv~l 525 (636)
...+|...+.++.-+..+++.|.+..+++++++- +...+ +.++....-|...++.-.++.+.+ .+.-++.-
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 3445555566666677777888889999998863 22222 223333333445556666666655 78888888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhccChHHHHHHHHcC
Q 006669 526 LTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT-----GLPRNKENAAAILLSLCKRDTENLACISRLG 600 (636)
Q Consensus 526 L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-----~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G 600 (636)
+.+.+......+.-++.|++...+....+++.+.+..|+++|.. ++-+.+..++++|.|+.. ...+...+..+|
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aG 402 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAG 402 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccc
Confidence 88888888899999999999999999999999999999998853 456777888999999986 557788899999
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhhcccc
Q 006669 601 AVIPLTELTKSGTERAKRKATSLLEHLRKLPQ 632 (636)
Q Consensus 601 ~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~ 632 (636)
+.+.++.+++...|++..|-...|++++...+
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 99999999999999999999999999876543
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.19 E-value=6e-10 Score=99.14 Aligned_cols=117 Identities=27% Similarity=0.325 Sum_probs=109.9
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
.+++.|+++.|++++.+.+..++..++.+|.+++.. ++....+.+.|+++.++.+|.+.+++++..|+++|.+++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467889999999999998999999999999999997 8888899999999999999999999999999999999999888
Q ss_pred HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 591 ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 591 ~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
.....+.+.|+++.|..++.+++..+++.|.++|.+|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999885
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=4.4e-10 Score=99.97 Aligned_cols=117 Identities=32% Similarity=0.418 Sum_probs=106.6
Q ss_pred HHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc-cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-
Q 006669 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP- 548 (636)
Q Consensus 471 ~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~-~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~- 548 (636)
.+.+.|+++.|+++|.++++..+..++.+|.+++.. ++.+..+++.|+++.++++|.+.+..++..|+++|.+|+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356779999999999999999999999999999987 577888899999999999999999999999999999999976
Q ss_pred hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 549 EAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 549 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
.....+.+.|+++.|++++...+..+++.|+++|.+||.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 456667788999999999999999999999999999873
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.13 E-value=3.7e-08 Score=110.26 Aligned_cols=282 Identities=16% Similarity=0.187 Sum_probs=214.1
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch
Q 006669 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN 427 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~ 427 (636)
.+.+.++.++..+..++.++...|+..|..+++.. .....+.+.+.++.|..++...+..++..+..++.+++. +++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 34557889999999999999999999999999854 455567788889999999988788889999999999987 6677
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHH------HHHHHHHH
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGR------KDAATALF 501 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k------~~A~~aL~ 501 (636)
...+.+.|.++.++.-|++.+.-++.+++.+|..|+..+.+...+.+.|.++.|+.++.+.....+ --.+....
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 778888999999999999989999999999999999988899999999999999999976421111 11224445
Q ss_pred hhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH-Hhc-CcHHHHH----HHHcCCCHHHH
Q 006669 502 NLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAI-VKA-STIPVLI----VLLRTGLPRNK 575 (636)
Q Consensus 502 nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i-~~~-g~i~~Lv----~lL~~~s~~~k 575 (636)
+++...+....-.-...+..|.+++.+.+......|+.+|+.+++..+|+..+ ... +.++..+ ....+++...|
T Consensus 275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk 354 (503)
T PF10508_consen 275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK 354 (503)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence 56554333222112346667777787889999999999999999999999988 443 3444444 44445677889
Q ss_pred HHHHHHHHHhhccChH----HHHH-------HHHcCChH-HHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 576 ENAAAILLSLCKRDTE----NLAC-------ISRLGAVI-PLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 576 e~A~~~L~~L~~~~~~----~~~~-------i~~~G~i~-~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
..+..+|.++-...++ .... ....+-.. .++.+++..=+..|-.|-.+|+.+..++
T Consensus 355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 9999999888432221 1111 12233344 6667777777999999999999887654
No 26
>PRK09687 putative lyase; Provisional
Probab=99.09 E-value=8.1e-09 Score=106.63 Aligned_cols=224 Identities=20% Similarity=0.120 Sum_probs=153.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHh-hcCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNL-LTTDDVMTQEHAVTAILNLSIYENNKGL 430 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~l-L~s~d~~~~e~Av~aL~nLs~~~~~k~~ 430 (636)
..++.+...+.+.++.+|..|+..|..+..... . ..-+++.|..+ +..+++.++..|+.+|.++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 345666666777777778888877777753211 0 11235666665 45567778888888887775422111
Q ss_pred HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK 510 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~ 510 (636)
...+++.+...+.+.++.+|..++.+|..+. ...+++.|+.+|.+.++.++..|+.+|.++....
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--- 190 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--- 190 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence 1113445556666777788888888876542 2347788888888888888888888888873222
Q ss_pred HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669 511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
..+++.|+.+|.+.+..++..|+..|..+-. ..+||.|+..|.++. .+..|+.+|..+..
T Consensus 191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--- 250 (280)
T PRK09687 191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--- 250 (280)
T ss_pred -----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---
Confidence 2467778888888888888888888876432 257888888888765 44567777766664
Q ss_pred HHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHH
Q 006669 591 ENLACISRLGAVIPLTELTK-SGTERAKRKATSLLEH 626 (636)
Q Consensus 591 ~~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~ 626 (636)
.-+++.|..++. +.+++++++|.+.|..
T Consensus 251 --------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 --------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred --------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 137889999986 7899999999998863
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.6e-08 Score=106.32 Aligned_cols=251 Identities=17% Similarity=0.201 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC
Q 006669 368 ERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG 447 (636)
Q Consensus 368 ~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~ 447 (636)
..+.|+..|-+++. +...-..+.....|..||+.|...+.+.....+..|..||+..+||..+.+.|.++.|+++....
T Consensus 279 LLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 34567778888885 44445566677889999999998899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhc
Q 006669 448 SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT 527 (636)
Q Consensus 448 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~ 527 (636)
.++.+......|+|||++...+.+|++.|.+|.|+.++.+.+. ...|+..|+.++.++..+.-+....+|+.+++.+.
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986543 45688899999999999999988999999999986
Q ss_pred CCCHHHHHHHHHHH-HHHhcChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHH
Q 006669 528 DSRNCMVDEALTIL-SVLASNPEAKIAIVKASTIPVLIVLL-RTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPL 605 (636)
Q Consensus 528 ~~~~~~~~~Al~~L-~~La~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L 605 (636)
.+...-++.++-+| -|||-+..+.+.+.+..++..|.+.- +...+ .-..++.++..+.+.....++. .+.-|
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--yvgdL 509 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--YVGDL 509 (791)
T ss_pred hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--HHHHH
Confidence 64433344444444 59999888888888877888877643 33332 2345667777776655555554 35555
Q ss_pred HHhhhcCCHHH-HHHHHHHHHHh
Q 006669 606 TELTKSGTERA-KRKATSLLEHL 627 (636)
Q Consensus 606 ~~Ll~~g~~~~-k~kA~~lL~~l 627 (636)
...+.+.++.. --....+|.++
T Consensus 510 a~i~~nd~~E~F~~EClGtlanL 532 (791)
T KOG1222|consen 510 AGIAKNDNSESFGLECLGTLANL 532 (791)
T ss_pred HHHhhcCchHHHHHHHHHHHhhc
Confidence 55555543332 33333344333
No 28
>PRK09687 putative lyase; Provisional
Probab=99.05 E-value=1.7e-08 Score=104.28 Aligned_cols=225 Identities=13% Similarity=0.063 Sum_probs=171.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.++.|+..|.+.+..++..|+..|..+.. ...++.+..++.++++.++..|+.+|..|...+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 47889999999999999999999887753 23467788889999999999999999998653321
Q ss_pred HhCChHHHHHH-HhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669 433 LAGAIPSIVQI-LRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511 (636)
Q Consensus 433 ~~G~I~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~ 511 (636)
...+++.|..+ +++.++.++..|+.+|.++....... ...++..+...+.+.++.++..++.+|.++..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 12356777776 56778999999999999985432111 11345667777888899999999999976532
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE 591 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 591 (636)
..+++.|+.+|.+.+..++..|+.+|..+... ...+++.|+..|...++.++..|+..|..+-. +
T Consensus 158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~- 222 (280)
T PRK09687 158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K- 222 (280)
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h-
Confidence 33899999999999999999999999988332 12457789999998899999999999977542 2
Q ss_pred HHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 592 NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 592 ~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
.+++.|...++++. ++..|..+|..+.
T Consensus 223 --------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 223 --------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred --------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 36777777777765 4456666666654
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.2e-07 Score=99.75 Aligned_cols=277 Identities=16% Similarity=0.189 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL 430 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~ 430 (636)
+..+..||+.|...+.+........|..|+- -.+|+..+.+.|.|+.|++++...+++.+...+..|+|||.+..++..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 3467788999988888888888889999986 568999999999999999999999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc-----------------------
Q 006669 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN----------------------- 487 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~----------------------- 487 (636)
++..|.+|.++.+|.+.+. ...|...|..+|.+++.|..+.....|+.+...+-.
T Consensus 382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999976542 233556666666666555544333333333221111
Q ss_pred --------------------------------------------------------C-CHHHHHHHHHHHHhhhhccchH
Q 006669 488 --------------------------------------------------------G-STRGRKDAATALFNLCIYMGNK 510 (636)
Q Consensus 488 --------------------------------------------------------~-~~~~k~~A~~aL~nL~~~~~n~ 510 (636)
. +...-..+++.|.||...+-..
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 1 1122233455555555555444
Q ss_pred HHHHH-hchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHh
Q 006669 511 GRAVR-AGIISALLKMLTD--SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLSL 585 (636)
Q Consensus 511 ~~lv~-~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L 585 (636)
..+++ ...||.+-..|.. ...+++-..+-.+..++....+...+..++.|+.|+++|+.. .++..-.-..+...+
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 44444 4566666666654 344555666666777777777777777889999999999863 344444555666677
Q ss_pred hccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
..+.......+.+......|..|+++.+..+|+-.--+|..+..+
T Consensus 620 l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 620 LKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 776434444555666777899999999999998888888777543
No 30
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.99 E-value=2.8e-08 Score=104.63 Aligned_cols=249 Identities=21% Similarity=0.199 Sum_probs=169.9
Q ss_pred HHHHHhccChhhHHHHHhc---CCHHHHHHhhcC--CChHHHHHHHHHHHHhhhC-cchHHHHHH------hCChHHHHH
Q 006669 375 EIRSLSKRSTDNRIIIADA---GAIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIML------AGAIPSIVQ 442 (636)
Q Consensus 375 ~L~~La~~~~~~r~~i~e~---g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~-~~~k~~I~~------~G~I~~Lv~ 442 (636)
.++.+-+...+.|..+.+. +....++++|+. .+.++....+..+..|..+ +.....+.. .....+++.
T Consensus 33 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ 112 (312)
T PF03224_consen 33 LIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK 112 (312)
T ss_dssp HHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH
Confidence 3333333333344444443 235566666653 5788889999999998774 444444443 236788899
Q ss_pred HHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC----CHHHHHHHHHHHHhhhhccchHHHHHHhch
Q 006669 443 ILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG----STRGRKDAATALFNLCIYMGNKGRAVRAGI 518 (636)
Q Consensus 443 lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~ 518 (636)
++.+++..+...|+.+|..|.............+.++.+++.+++. +......++.+|.+|...++.|..+.+.|+
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~ 192 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG 192 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence 8888999999999999999977665444443356778888887753 344568899999999999999999999999
Q ss_pred HHHHHHHh------cC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh
Q 006669 519 ISALLKML------TD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 519 v~~Lv~lL------~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~ 590 (636)
++.|++++ .+ .+..+..+++-++|.|+.+++....+...+.|+.|+++++.. .+++..-++++|.|++..++
T Consensus 193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 99999999 22 456678899999999999999999999989999999999864 57888999999999998776
Q ss_pred H-HHHHHHHcCChHHHHHhhhc--CCHHHHHHHHHH
Q 006669 591 E-NLACISRLGAVIPLTELTKS--GTERAKRKATSL 623 (636)
Q Consensus 591 ~-~~~~i~~~G~i~~L~~Ll~~--g~~~~k~kA~~l 623 (636)
. ....++..|+++.|-.|... +++...+--..+
T Consensus 273 ~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 273 KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5 66677888888777777654 466666554443
No 31
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.2e-08 Score=109.23 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=208.1
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHH-hccChhhHHHHHhcCCHHHHHHhhcCC-ChHHHHHHHHHHHHhhh-Ccc
Q 006669 351 VVAIEALVRKLSSR-SVEERRAAVAEIRSL-SKRSTDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNLSI-YEN 426 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L-a~~~~~~r~~i~e~g~i~~Lv~lL~s~-d~~~~e~Av~aL~nLs~-~~~ 426 (636)
.+-+..|++.|... ++..|.+|+.+|..+ .-.+.+.-..+--.-.||.|+.+|+++ +.+++-+|+.+|.+|+. .|.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34688899999866 888899999998864 444554444343446799999999874 58999999999999998 788
Q ss_pred hHHHHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669 427 NKGLIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI 505 (636)
Q Consensus 427 ~k~~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~ 505 (636)
....+++.++||.|++-|.. ..+++.++++.+|..+|..+ -..|.++|++...+..|.--+..+++.|+....|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999987654 57899999999999998654 4677888999999999987788899999999999986
Q ss_pred c--cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCC----CHHHH
Q 006669 506 Y--MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTG----LPRNK 575 (636)
Q Consensus 506 ~--~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~----s~~~k 575 (636)
. .+.-..+++ ++|.|..+|+..+...++.++-++..++. .++--+.+...|.|....++|... +..+.
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 4 233344443 79999999999888999999999988876 345567788889999999998743 34566
Q ss_pred HHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc
Q 006669 576 ENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS 611 (636)
Q Consensus 576 e~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~ 611 (636)
...+..|..+|++.+-....+...+....|..++..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 677888888999888888888888888888888754
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.96 E-value=1.7e-07 Score=101.00 Aligned_cols=274 Identities=13% Similarity=0.093 Sum_probs=202.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC-ChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~-d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
...++..|...+..++..|+..|..+...+..+.......-....|...|++. +...+.-++.+|.+|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566788888889999999999988754433211111111334566666654 46788889999999999999999999
Q ss_pred HhCChHHHHHHHhcC--cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCC-HHHHHHHHHHHHhhhhcc--
Q 006669 433 LAGAIPSIVQILRAG--SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGS-TRGRKDAATALFNLCIYM-- 507 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~-~~~k~~A~~aL~nL~~~~-- 507 (636)
+.++++.|+.+|+.. +...+.+++-+++-||+.++....+...+.|+.|+++++... ..+.+-++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 988999999999864 568899999999999999887777766799999999999764 577888999999997643
Q ss_pred -----chHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHH-------HHHhcCh------------------------h
Q 006669 508 -----GNKGRAVRAGIISALLKMLTD--SRNCMVDEALTIL-------SVLASNP------------------------E 549 (636)
Q Consensus 508 -----~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L-------~~La~~~------------------------~ 549 (636)
.....+++.|+.+.+-.+-.. .++++.+..-.+- ..+++.. +
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 124566777776655554433 4666554332221 2222211 2
Q ss_pred hHHHHHhcC--cHHHHHHHHc-CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 006669 550 AKIAIVKAS--TIPVLIVLLR-TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEH 626 (636)
Q Consensus 550 ~~~~i~~~g--~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 626 (636)
+...+-+.+ .+..|+++|. +.++.+-.-|+.=+..++.+.|..+..+.+.|+=..+++++.+.++.+|..|..++..
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 233444433 4788999995 4457777788888999999999888888899999999999999999999999998886
Q ss_pred h
Q 006669 627 L 627 (636)
Q Consensus 627 l 627 (636)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 33
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.93 E-value=4.8e-10 Score=80.75 Aligned_cols=39 Identities=36% Similarity=0.824 Sum_probs=31.1
Q ss_pred CccchhhccCCeecCCCchhhhHHHHHHHcCCC---CCCCCC
Q 006669 260 CPISLELMRDPVIVATGQTYERSYIQRWIDCGN---VTCPKT 298 (636)
Q Consensus 260 CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~---~~cP~~ 298 (636)
|||++++|+|||++++||+|++.+|++|++..+ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998543 358875
No 34
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.90 E-value=1.1e-09 Score=104.04 Aligned_cols=61 Identities=30% Similarity=0.573 Sum_probs=53.0
Q ss_pred CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC---------------CCCCCCCCCcccccCCcccchh
Q 006669 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC---------------GNVTCPKTQQKLEHLTLTPNYV 312 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~---------------~~~~cP~~~~~l~~~~l~pn~~ 312 (636)
....++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+..+....++|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 455678999999999999999999999999999999742 2357999999999988988763
No 35
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.4e-09 Score=101.43 Aligned_cols=184 Identities=22% Similarity=0.244 Sum_probs=118.5
Q ss_pred hhhchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhh--cCCCcchhHHHh-hc------CCC
Q 006669 107 SDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATER--YGSMNSRNFFHA-LS------QPL 177 (636)
Q Consensus 107 ~l~~~~~v~~~~~~~~~~~~~~L~~lp~~~~~~s~ev~e~~~~~~~q~~~~~~~--~~~~~~~~~~~~-~~------~~~ 177 (636)
++.++-.-+..|-+....+.++.|..--..+..-+++-++. ++|+.. .-..++++..++ +. ...
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L-------~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~ 155 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKAL-------RDAKKKRWEVSEEKRIRQELELHSYLESLIEG 155 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHH-------HHHHhCccchhHHHHHHHHhhHHHHHHHHhcc
Confidence 55556666677788888888887776555555556554443 333322 123444445544 11 111
Q ss_pred CcccChhHHHHHHHhcCc--ccchh--hcc-cchhhhhHHHHHHhcccccccCCCccccccccchhhhhhhhhccCCCCC
Q 006669 178 EKEVSITNHEVKAKANHV--PDTID--SEC-HDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVL 252 (636)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~--~~~~~--~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (636)
+++- +.=+.... |. +.++. +.+ .+-+..+..+-.+.++++ ......
T Consensus 156 ~~~~--~~s~~~~N--~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~-------------------------e~rk~r 206 (284)
T KOG4642|consen 156 DRER--ELSEWQEN--GESDEHLKTMQVPIEQDHDHTTKELSELFSKVD-------------------------EKRKKR 206 (284)
T ss_pred chhh--HHHHHHHc--CCChHHHhhhcchhHHHHHHHHHHHHHHHHHHH-------------------------HHhccc
Confidence 1111 00011111 22 12221 112 122344555555555441 112345
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhccc
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNI 326 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~ 326 (636)
.+|+.++|-||.++|+|||+.|+|.||+|.-|.++...-+...|+|+.++....++||++++..|..+...|..
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999998788999999999999999999999999999988753
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.84 E-value=1.9e-07 Score=98.29 Aligned_cols=220 Identities=19% Similarity=0.185 Sum_probs=163.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh------cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669 356 ALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD------AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG 429 (636)
Q Consensus 356 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e------~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~ 429 (636)
.|++.+ +.+.+.....+..+..+...++.....+.+ .....++++++.++|..++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 467788888888888888777766655554 1267889999999999999999999999987544443
Q ss_pred HHHHhCChHHHHHHHhc----CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh-----cc--CCHHHHHHHHH
Q 006669 430 LIMLAGAIPSIVQILRA----GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL-----QN--GSTRGRKDAAT 498 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL-----~~--~~~~~k~~A~~ 498 (636)
.-...+.++.++..|++ .+.+.+..++.+|.+|...+++|..+.+.++++.|+.++ .. .+......++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33335667888888875 345677899999999999999999999999999999999 22 24678899999
Q ss_pred HHHhhhhccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChh--hHHHHHhcCcHHHHHHHHcC--CCHH
Q 006669 499 ALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPE--AKIAIVKASTIPVLIVLLRT--GLPR 573 (636)
Q Consensus 499 aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~--~~~~i~~~g~i~~Lv~lL~~--~s~~ 573 (636)
+++-|+.+++....+.+.+.|+.|+++++. ..+.++.-++++|.||...+. ....|+..|+++.+-.+... ++++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 999999999999999999999999999976 678899999999999999766 78888887766665555543 3455
Q ss_pred HHH
Q 006669 574 NKE 576 (636)
Q Consensus 574 ~ke 576 (636)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 37
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.83 E-value=1.9e-07 Score=97.41 Aligned_cols=277 Identities=14% Similarity=0.134 Sum_probs=205.9
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHH-------HHHHHHHHHhh
Q 006669 352 VAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQ-------EHAVTAILNLS 422 (636)
Q Consensus 352 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~-------e~Av~aL~nLs 422 (636)
.....+++.|.+. .++..+-....+...+ +++.-+-.+++.|.+..++.+++. .+-.-. ..+.....-|.
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 4466677777654 3344444555555555 577888899999999999999875 222112 22333333333
Q ss_pred hCcchHHHHHHhC-ChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc-----CCHHHHHHH
Q 006669 423 IYENNKGLIMLAG-AIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN-----GSTRGRKDA 496 (636)
Q Consensus 423 ~~~~~k~~I~~~G-~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~-----~~~~~k~~A 496 (636)
..++.-..+...+ .+..++.-+.+.+......++-++.|++..|.++.++++.+.+..|+++|.. |+.+.+..+
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 3344433444433 7888888899999999999999999999999999999999999999998853 578899999
Q ss_pred HHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHh-cCcHHHHHHHHcCCC-HH
Q 006669 497 ATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVK-ASTIPVLIVLLRTGL-PR 573 (636)
Q Consensus 497 ~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~-~g~i~~Lv~lL~~~s-~~ 573 (636)
+.||+||..-..||..++.+|++..++.++....+.++-.-++.|..+-...+ ...++.+ ...+..|++.-++++ ..
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG 461 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG 461 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence 99999999999999999999999999999988888888888888877766444 3334443 245778888877655 33
Q ss_pred HHHHHHHHHHHhhccC--hHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 574 NKENAAAILLSLCKRD--TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 574 ~ke~A~~~L~~L~~~~--~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
+--..-+.|..+..++ .+....+.+.|+++.++.++...+-..+..|.-+|-.+..
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 5556677777777763 3455667789999999999988888888888877766643
No 38
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=5.6e-09 Score=110.82 Aligned_cols=69 Identities=16% Similarity=0.396 Sum_probs=62.5
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHh
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCT 322 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~ 322 (636)
.+...|.||||++++.+||+++|||+||+.||..|+.. ...||.|+..+....+.+|+.+.++|+.|..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 45678999999999999999999999999999999975 4589999999988889999999999998864
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.79 E-value=8.9e-07 Score=106.01 Aligned_cols=168 Identities=20% Similarity=0.175 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG 429 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~ 429 (636)
+...++.|++.|.+.++.+|..|+..|..+.. .++++.|+..|..+++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 44567889999999999999999988877642 245778888888888888888888887663211
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-----------ch--hH----HHHhcCchHHHHhhhccCCHHH
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-----------EN--KI----IIGASGAIPALVDLLQNGSTRG 492 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-----------~~--~~----~i~~~g~i~~Lv~LL~~~~~~~ 492 (636)
...+.+...|.+.++.++..|+..|..+...+ +. +. .++..+..+.|..++.+.++.+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 01123444444445555555554444432100 00 00 0000011233344444444444
Q ss_pred HHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 006669 493 RKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545 (636)
Q Consensus 493 k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La 545 (636)
+..++.+|..+.... ...++.|..++.++++.++..|+..|..+.
T Consensus 759 R~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 759 RIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred HHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 444444444442211 123556666666666666666666665553
No 40
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=6.6e-06 Score=91.62 Aligned_cols=274 Identities=21% Similarity=0.222 Sum_probs=204.9
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhhCcc-
Q 006669 351 VVAIEALVRKLSSRS-VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSIYEN- 426 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~~~- 426 (636)
...|+.|+..+.+.. .+.|+.|++.|+.+++ .+|..++.. |+++|+..|.. .|+++...++..++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 457999999997654 6789999999999997 467666644 57999999975 578999999999999987542
Q ss_pred ------hH----------HHHH-HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC--chhHHHHhc-CchHHHHhhhc
Q 006669 427 ------NK----------GLIM-LAGAIPSIVQILRAGSMEARENAAATLFSLSLLD--ENKIIIGAS-GAIPALVDLLQ 486 (636)
Q Consensus 427 ------~k----------~~I~-~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~-g~i~~Lv~LL~ 486 (636)
.+ ..++ ..+.|..++..+...+-.+|..+...|.+|-... +.+..+... -+|..|+.+|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 12 1222 3688999999999999999999999999986553 455555554 89999999999
Q ss_pred cCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCC----CHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcH
Q 006669 487 NGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDS----RNCMVDEALTILSVLAS-NPEAKIAIVKASTI 560 (636)
Q Consensus 487 ~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i 560 (636)
+....++-+++-.|..|....++.++++. .++...|..++... ..-+++.|+..|.||-. +..++.-+.+.+.|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 98888999999999999999999888888 88999999999652 23578999999999988 45677788888899
Q ss_pred HHHHHHHcC---CCH--------H--HHHHHHHHHHHhhccC--h----HHHHHHHHcCChHHHHHhhhcCC--HHHHHH
Q 006669 561 PVLIVLLRT---GLP--------R--NKENAAAILLSLCKRD--T----ENLACISRLGAVIPLTELTKSGT--ERAKRK 619 (636)
Q Consensus 561 ~~Lv~lL~~---~s~--------~--~ke~A~~~L~~L~~~~--~----~~~~~i~~~G~i~~L~~Ll~~g~--~~~k~k 619 (636)
|.|.++|.. ++. + .-..|+.++..+..-+ + .+...+.+.+++..|+.++.+.. ..++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988863 221 1 1123445555554321 1 23346678899999998876542 233444
Q ss_pred HHHHHHHhh
Q 006669 620 ATSLLEHLR 628 (636)
Q Consensus 620 A~~lL~~l~ 628 (636)
+--.+..+.
T Consensus 337 siitvAevV 345 (970)
T KOG0946|consen 337 SIITVAEVV 345 (970)
T ss_pred HHHHHHHHH
Confidence 444444443
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.5e-06 Score=87.16 Aligned_cols=183 Identities=21% Similarity=0.193 Sum_probs=152.6
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHH
Q 006669 363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIV 441 (636)
Q Consensus 363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv 441 (636)
+.+.+.+..|+..|..+. ++.+|-.-+...|+..+++..+.+.++.+++.|+.+|...+. ++..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 457889999999999999 478899999999999999999999999999999999999988 788899999999999999
Q ss_pred HHHhcC-cHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhccC--CHHHHHHHHHHHHhhhhccc-hHHHHHHh
Q 006669 442 QILRAG-SMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNG--STRGRKDAATALFNLCIYMG-NKGRAVRA 516 (636)
Q Consensus 442 ~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~~~--~~~~k~~A~~aL~nL~~~~~-n~~~lv~~ 516 (636)
..|.+. +..++..|..++.+|...... .......+++..|...|+++ +.+.+..++..+..|...+. .+..+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999865 577889999999999877653 45555667899999999984 67888999999999876553 44444456
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 517 GIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 517 g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
|....++.+....+....+.++.++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777777777777777888888777766655
No 42
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.68 E-value=4.3e-06 Score=100.16 Aligned_cols=229 Identities=21% Similarity=0.128 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-----
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE----- 425 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~----- 425 (636)
...++.|++.|++.+..++..|+..|..+.... ...+.|...|.++|+.++..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 456889999999999999999999887774311 11244555666666666666666665442100
Q ss_pred ------c--hHHH----HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHH
Q 006669 426 ------N--NKGL----IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGR 493 (636)
Q Consensus 426 ------~--~k~~----I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k 493 (636)
+ .+.. +..-+..+.|...+.+.++++|..++.+|..+.... ...++.|..++++.++.++
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHH
Confidence 0 0000 001122344455555566666666666665553211 1347889999999999999
Q ss_pred HHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHH
Q 006669 494 KDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPR 573 (636)
Q Consensus 494 ~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~ 573 (636)
..|+.+|.++.... .+++.++..|.+.++.++..|+.+|..+.. ...++.|+.+|.+.++.
T Consensus 793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHH
Confidence 99999998874321 133568888989999999999999986642 24569999999999999
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 006669 574 NKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEH 626 (636)
Q Consensus 574 ~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 626 (636)
+|..|+.+|..+- .++. ..+.|...+.+.++.+++.|..+|..
T Consensus 854 VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRWP-GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhccC-CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999998762 1222 46777788889999999999998864
No 43
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.68 E-value=6.1e-09 Score=80.04 Aligned_cols=45 Identities=33% Similarity=0.697 Sum_probs=31.9
Q ss_pred CCcccCccchhhccCCee-cCCCchhhhHHHHHHHc-CCCCCCCCCC
Q 006669 255 PADFLCPISLELMRDPVI-VATGQTYERSYIQRWID-CGNVTCPKTQ 299 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~-~~~~~cP~~~ 299 (636)
..+|.||||++.|.|||. ..|||+|+|.+|.+|+. .+...||++|
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 346899999999999998 59999999999999994 3456799864
No 44
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.53 E-value=6.2e-07 Score=79.82 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=136.6
Q ss_pred HhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Q 006669 473 GASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK 551 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~ 551 (636)
.+.+.+..||+-.++. +.+.|+....-|.|.+.++-|...+.+..++...+..|...+..+++.+++.|.|+|-.+.+.
T Consensus 13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 3446778888877654 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
..|.+++++|.++..+.+....+...|+..|..||..+...+.++....++..+.....+.+.+.+.-|...|....
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 99999999999999998887888889999999999988888999988878888877777777777777777776543
No 45
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=6.6e-06 Score=85.15 Aligned_cols=178 Identities=24% Similarity=0.201 Sum_probs=154.4
Q ss_pred CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHHHHhchHHHHHHH
Q 006669 447 GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKM 525 (636)
Q Consensus 447 ~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~lv~~g~v~~Lv~l 525 (636)
.+++-++.|..-|..+..+-+|...+...|++.+++.++.+++...+..|+++|...+.+++ .+..+++.|+.+.|+.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 36888999999999999888899999999999999999999999999999999999988775 57788899999999999
Q ss_pred hcC-CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 006669 526 LTD-SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRT--GLPRNKENAAAILLSLCKRDTENLACISRLGA 601 (636)
Q Consensus 526 L~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~ 601 (636)
+.. .+...+..|+.++..|-. ++.+...+...++...|...|.+ .+.+.|..|+..+..|..........+...|.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 975 566777899999999988 56688899999999999999998 56889999999999999888877777778888
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHH
Q 006669 602 VIPLTELTKSGTERAKRKATSLL 624 (636)
Q Consensus 602 i~~L~~Ll~~g~~~~k~kA~~lL 624 (636)
...+..+..+....+++.|...+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~ 277 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTAL 277 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHH
Confidence 88888888888887777766543
No 46
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.50 E-value=6.1e-08 Score=68.82 Aligned_cols=38 Identities=34% Similarity=0.887 Sum_probs=33.4
Q ss_pred CccchhhccCC-eecCCCchhhhHHHHHHHcCCCCCCCCC
Q 006669 260 CPISLELMRDP-VIVATGQTYERSYIQRWIDCGNVTCPKT 298 (636)
Q Consensus 260 CPis~~~m~dP-v~~~~G~t~~r~~I~~w~~~~~~~cP~~ 298 (636)
|||+++.++|| +++++||+|++.+|++|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68999999999999999987 6889975
No 47
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.48 E-value=1.1e-05 Score=91.14 Aligned_cols=217 Identities=22% Similarity=0.212 Sum_probs=115.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I 431 (636)
.+..+.+.|.++++..+..|++.|.++. +++-... .++.+.+++.++++.++..|+.++..+.. +++.-
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~--- 149 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV--- 149 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---
Confidence 4566677777777777777777777776 2332222 25667777777777777777777777765 33221
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHc-cCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK 510 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~L-s~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~ 510 (636)
... .++.+..+|.+.++.++.+|+.++..+ ...+.+.. .-...++.|..++...++-.+..++..|..++......
T Consensus 150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~--~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS--LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT--HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh--hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 112 466777777777777777777777777 11111110 00122333333344455555656666665554433221
Q ss_pred HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669 511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 589 (636)
..- ...++.+..++.+.+..+.-.|+.++..+...+. .-..+++.|+.++.+.++..+-.++..|..++...
T Consensus 227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 100 3344445555544444555555555555444433 11233445555555444555555555555555433
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.45 E-value=1.7e-05 Score=89.49 Aligned_cols=252 Identities=19% Similarity=0.211 Sum_probs=176.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.++.+.+.+.++++.+|..|+.++..+.+.+++. +... .++.+..+|.+.++.++..|+.++..+...+.....+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~- 189 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSL- 189 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTH-
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhh-
Confidence 4667888889999999999999999998876653 2222 5889999999899999999999999991111111111
Q ss_pred HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669 433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR 512 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~ 512 (636)
-...+..|..++...++-.+...+.+|..++........- ...++.+..++++.++.+...++.++..+.....
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~---- 263 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE---- 263 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----
Confidence 1223445555556778889999999999887665432211 4567888888888888888889998887765443
Q ss_pred HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhccChH
Q 006669 513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDTE 591 (636)
Q Consensus 513 lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~ 591 (636)
.-..+++.|+.++.+.+..++..++..|..++... ...+ . .....+..+. +.++.+|..++.+|..++. +.
T Consensus 264 -~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~ 335 (526)
T PF01602_consen 264 -LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ES 335 (526)
T ss_dssp -HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH----HH
T ss_pred -HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCCChhHHHHHHHHHhhccc--cc
Confidence 44568889999999888889999999999998854 2222 2 2233344455 6778899999999999984 34
Q ss_pred HHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhh
Q 006669 592 NLACISRLGAVIPLTELTK-SGTERAKRKATSLLEHLR 628 (636)
Q Consensus 592 ~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~ 628 (636)
+...+ ++.|...+. ..++..++.+...+..+.
T Consensus 336 n~~~I-----l~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 336 NVKEI-----LDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHHH-----HHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred chhhH-----HHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 44443 555666663 346667777777766654
No 49
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.42 E-value=8.5e-08 Score=69.10 Aligned_cols=36 Identities=25% Similarity=0.704 Sum_probs=23.2
Q ss_pred CccchhhccC----CeecCCCchhhhHHHHHHHcCC---CCCCC
Q 006669 260 CPISLELMRD----PVIVATGQTYERSYIQRWIDCG---NVTCP 296 (636)
Q Consensus 260 CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~---~~~cP 296 (636)
||||.+ |.+ |++++|||+|++.||++|...+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 989 9999999999999999999854 34576
No 50
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.36 E-value=0.00015 Score=78.60 Aligned_cols=235 Identities=18% Similarity=0.102 Sum_probs=170.2
Q ss_pred CCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcch-HHHHHH-----hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC
Q 006669 394 GAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENN-KGLIML-----AGAIPSIVQILRAGSMEARENAAATLFSLSLLD 466 (636)
Q Consensus 394 g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~-k~~I~~-----~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 466 (636)
..+..++++|+. .+.++....+..+..|...... ...+.+ .....+++.+|..++..+...|+.+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 356778888865 4567778888888887764433 334444 346788888998888889999999999886543
Q ss_pred chhHHHHh-cCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHH
Q 006669 467 ENKIIIGA-SGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMVDEALTILS 542 (636)
Q Consensus 467 ~~~~~i~~-~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~ 542 (636)
.....-.. .-.+.-|...++++ +.+.+..++.+|..|...++.|..+.+.++++.|+++|+. .+..+.-.++-++|
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 21111000 01333455556554 4677888889999999999999999999999999999975 25578889999999
Q ss_pred HHhcChhhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhccC------hHHHHHHHHcCChHHHHHhhhc--CC
Q 006669 543 VLASNPEAKIAIVKASTIPVLIVLLRTGL-PRNKENAAAILLSLCKRD------TENLACISRLGAVIPLTELTKS--GT 613 (636)
Q Consensus 543 ~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~------~~~~~~i~~~G~i~~L~~Ll~~--g~ 613 (636)
.|+.++++...+...+.|+.|+++++... +++-.-++++|.|+...+ ......++..|+++.+..|... ++
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D 292 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDD 292 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCc
Confidence 99999988777777899999999998654 677788999999998753 2344566777777766666654 46
Q ss_pred HHHHHHHHHHHHHhh
Q 006669 614 ERAKRKATSLLEHLR 628 (636)
Q Consensus 614 ~~~k~kA~~lL~~l~ 628 (636)
+...+--..+-..|.
T Consensus 293 edL~edl~~L~e~L~ 307 (429)
T cd00256 293 EDLTDDLKFLTEELK 307 (429)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665555555443
No 51
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00022 Score=72.30 Aligned_cols=269 Identities=19% Similarity=0.193 Sum_probs=182.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
...+++++.+.++.++..|+..+..++.. ..+..... .-.++.+..++...++ -+.|+++|.|++.++..++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 56789999999999999999988888764 22222221 2457778888875555 6789999999999998888888
Q ss_pred HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc------CchHHHHhhhccC--CH-HHHHHHHHHHHhh
Q 006669 433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS------GAIPALVDLLQNG--ST-RGRKDAATALFNL 503 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~------g~i~~Lv~LL~~~--~~-~~k~~A~~aL~nL 503 (636)
.. .+..++..+.+.........+..|.||+..+.....+... .++..++.-..+. +. .-...-+..+.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 77 8888888888776666777889999999988754433221 2333333333322 21 2234456677889
Q ss_pred hhccchHHHHHHhchHHH--HHHHhcCCCHHHH-HHHHHHHHHHhcChhhHHHHHhcC--cHHHH---------------
Q 006669 504 CIYMGNKGRAVRAGIISA--LLKMLTDSRNCMV-DEALTILSVLASNPEAKIAIVKAS--TIPVL--------------- 563 (636)
Q Consensus 504 ~~~~~n~~~lv~~g~v~~--Lv~lL~~~~~~~~-~~Al~~L~~La~~~~~~~~i~~~g--~i~~L--------------- 563 (636)
+....+|..+.+...++. ++. +.+.+..++ .-.+++|.|.|........+...+ .+|.+
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 988888888877553332 222 222222332 345788888887666555444321 22322
Q ss_pred ------HHHHc-----CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 006669 564 ------IVLLR-----TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLRK 629 (636)
Q Consensus 564 ------v~lL~-----~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~ 629 (636)
+++|. ..++.++..-+.+|..||. ....+..+...|+.+.|.++-+. .++.++++.-.+..++.+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 24443 1357788899999999997 55778888999999999988765 467777777777777765
No 52
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.29 E-value=0.00011 Score=77.37 Aligned_cols=272 Identities=13% Similarity=0.091 Sum_probs=198.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH---HHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHH
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNR---IIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKG 429 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r---~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~ 429 (636)
-.+.+..|...+.-....+.+.|..++.-....- ..-.. ...|-..+.+ .+......|+.+|-.+...++.|-
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 4556777877888777777788877765332111 11111 2234445554 567778889999999999999999
Q ss_pred HHHHhCChHHHHHHHhc--CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCC-HHHHHHHHHHHHhhhhc
Q 006669 430 LIMLAGAIPSIVQILRA--GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGS-TRGRKDAATALFNLCIY 506 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~-~~~k~~A~~aL~nL~~~ 506 (636)
.+..+.++..++..+.+ .+...+....-+++-|++++.....+...+.|+.|.+++++.. ..+.+-.+.++.|++..
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999843 3688999999999999999988888866699999999999764 56777888899999866
Q ss_pred cc-------hHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHH-------HHHhcCh----------------------
Q 006669 507 MG-------NKGRAVRAGIISALLKMLTD--SRNCMVDEALTIL-------SVLASNP---------------------- 548 (636)
Q Consensus 507 ~~-------n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L-------~~La~~~---------------------- 548 (636)
.+ ....++..++.+.+-.+-.. .++++++..-.+- ..|++..
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 53 23556666655555444433 4555554332222 2233221
Q ss_pred --hhHHHHHhc--CcHHHHHHHHcCCC-HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHH
Q 006669 549 --EAKIAIVKA--STIPVLIVLLRTGL-PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSL 623 (636)
Q Consensus 549 --~~~~~i~~~--g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~l 623 (636)
++...+-+. ..+..|+.+|...+ |..-.-|+.=+....++.|+....+.+.|+=+.+..|+...++++|-.|..+
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 122333333 36889999998765 7777888888999999999999999999999999999999999999999988
Q ss_pred HHHhh
Q 006669 624 LEHLR 628 (636)
Q Consensus 624 L~~l~ 628 (636)
+..|-
T Consensus 433 vQ~lm 437 (442)
T KOG2759|consen 433 VQKLM 437 (442)
T ss_pred HHHHH
Confidence 87653
No 53
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.5e-07 Score=88.49 Aligned_cols=57 Identities=26% Similarity=0.561 Sum_probs=51.5
Q ss_pred CcccCccchhhccCCeecCCCchhhhHHHHHHHc--CCCCCCCCCCcccccCCcccchh
Q 006669 256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWID--CGNVTCPKTQQKLEHLTLTPNYV 312 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~--~~~~~cP~~~~~l~~~~l~pn~~ 312 (636)
..|-|-||++.-+|||++.|||-||=-||.+|+. .+...||+|+...+...++|.|.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4699999999999999999999999999999986 34566899999999999999874
No 54
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.23 E-value=6.4e-07 Score=64.27 Aligned_cols=39 Identities=38% Similarity=1.033 Sum_probs=36.2
Q ss_pred CccchhhccCCe-ecCCCchhhhHHHHHHHc-CCCCCCCCC
Q 006669 260 CPISLELMRDPV-IVATGQTYERSYIQRWID-CGNVTCPKT 298 (636)
Q Consensus 260 CPis~~~m~dPv-~~~~G~t~~r~~I~~w~~-~~~~~cP~~ 298 (636)
|||+.+.+.+|+ ++++||+|++.+|.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 999999999999999998 667789975
No 55
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.22 E-value=7.8e-07 Score=89.63 Aligned_cols=67 Identities=18% Similarity=0.361 Sum_probs=60.7
Q ss_pred CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHH
Q 006669 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWC 321 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~ 321 (636)
+-+-++|-||.+.|+-|+++|||||||--||.+++. .+..||.|..+.....+..|+.+.++|+.+-
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 445689999999999999999999999999999997 4789999999999999999999988888763
No 56
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.19 E-value=1.3e-05 Score=71.57 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=118.3
Q ss_pred CChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHH
Q 006669 435 GAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA 513 (636)
Q Consensus 435 G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~l 513 (636)
+.+..||.-... .+.++++...+-|.|.+.++.|-..+.+.+++...|+-|...+...++.+...|+|+|..+.|...+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 445666665554 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669 514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583 (636)
Q Consensus 514 v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 583 (636)
++++++|..+..+++++..++..|+..|..|+.... .|..+.+..++..+.+.-.+.+.+.+.-|-..|-
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999988543 4566655444444433332334444444444443
No 57
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.18 E-value=1e-06 Score=66.15 Aligned_cols=47 Identities=30% Similarity=0.557 Sum_probs=41.0
Q ss_pred CcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 256 ADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
+++.|+|+++-+.++++.|+||. |+..|+.+|+. +...||+|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 36789999999999999999999 99999999998 6789999998764
No 58
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.00018 Score=81.15 Aligned_cols=234 Identities=21% Similarity=0.204 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh---HHHHHhcCCHHHHHHhhcCC-------ChHHHHHHHHHHHHh
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDN---RIIIADAGAIPVLVNLLTTD-------DVMTQEHAVTAILNL 421 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~---r~~i~e~g~i~~Lv~lL~s~-------d~~~~e~Av~aL~nL 421 (636)
..++..+..|++.+.+.+..++--+.++.+.++.+ ++.+.++=+.+.|-++|+++ ....+.-|+++|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 46888999999999778888888899998866633 45678886788899999872 245678899999999
Q ss_pred hhCcchHHHHHHhCChHHHHHHHhcCcH-HHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHH
Q 006669 422 SIYENNKGLIMLAGAIPSIVQILRAGSM-EARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL 500 (636)
Q Consensus 422 s~~~~~k~~I~~~G~I~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL 500 (636)
+..++....----+-||.|++++.+.+. ++...+..+|..++..++.+..+.+.|+++.|++.+.+ .+.....|+.+|
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 9876654221123569999999988766 99999999999999999999999999999999999987 667789999999
Q ss_pred HhhhhccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HHHHHhc----CcHHHHHHHHcC-
Q 006669 501 FNLCIYMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPEA--KIAIVKA----STIPVLIVLLRT- 569 (636)
Q Consensus 501 ~nL~~~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~~----g~i~~Lv~lL~~- 569 (636)
.+++...+....--. ..+++.+-..+.......+-..+..|..+-...+. ....... ....-+-.+|++
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 998765442111100 23556666666555555566778888777664421 1111112 233344455655
Q ss_pred CCHHHHHHHHHHHHHhh
Q 006669 570 GLPRNKENAAAILLSLC 586 (636)
Q Consensus 570 ~s~~~ke~A~~~L~~L~ 586 (636)
.++..|..|..+..+|.
T Consensus 244 ~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLL 260 (543)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34666666554444443
No 59
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.12 E-value=1.9e-06 Score=85.74 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=41.6
Q ss_pred CCCcccCccchhhccCC--------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 254 IPADFLCPISLELMRDP--------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dP--------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
..++..||||++.+.+| ++.+|||+||+.||.+|... +.+||.|+.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 35678999999988764 66789999999999999974 679999998765
No 60
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.8e-05 Score=83.51 Aligned_cols=212 Identities=18% Similarity=0.185 Sum_probs=159.3
Q ss_pred HHHHHHhhcCC-ChHHHHHHHHHHHHh-hh-CcchHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCC-CchhH
Q 006669 396 IPVLVNLLTTD-DVMTQEHAVTAILNL-SI-YENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLL-DENKI 470 (636)
Q Consensus 396 i~~Lv~lL~s~-d~~~~e~Av~aL~nL-s~-~~~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~-~~~~~ 470 (636)
+..|+.=|... |+..|..|+.-|..+ ++ +++.-.-+.-.-.+|.|+.+|+.. +.++...|+++|.+|... ++...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34455555544 788888887777654 44 555444444556899999999876 799999999999999865 66777
Q ss_pred HHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--
Q 006669 471 IIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-- 547 (636)
Q Consensus 471 ~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-- 547 (636)
..++.++||.|++-|..= -.++-+.++.||-.++..++ ..+.++|++...+..|.--+..++..|+++.+|+|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 778889999999887653 35788899999999987553 4567889999888887545677889999999999983
Q ss_pred hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc---cChHHHHHHHHcCChHHHHHhhhc
Q 006669 548 PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK---RDTENLACISRLGAVIPLTELTKS 611 (636)
Q Consensus 548 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~---~~~~~~~~i~~~G~i~~L~~Ll~~ 611 (636)
++.=.-+. .++|.|..+|...+.+.-|.++-.+..++. ++++..+.+...|.+.....|+..
T Consensus 327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 44333343 479999999998888888888777776653 466777777788887777776643
No 61
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.6e-06 Score=88.93 Aligned_cols=69 Identities=28% Similarity=0.667 Sum_probs=58.5
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH 324 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n 324 (636)
...+++.||||++.+++|++++|||+|||.||+.|+. +...||.|+. .. ..+.+|..+.+++......+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999999999998 6678999996 32 27778998888888776554
No 62
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00052 Score=77.03 Aligned_cols=246 Identities=19% Similarity=0.178 Sum_probs=189.5
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCh------hhH-----------HHHHhcCCHHHHHHhhcCCChHHHHH
Q 006669 353 AIEALVRKLSS--RSVEERRAAVAEIRSLSKRST------DNR-----------IIIADAGAIPVLVNLLTTDDVMTQEH 413 (636)
Q Consensus 353 ~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~------~~r-----------~~i~e~g~i~~Lv~lL~s~d~~~~e~ 413 (636)
+++.|++-|.. .+++....++..+..+..+++ +.+ ..|...+.|..|+..+...|-.++..
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~ 141 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY 141 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence 57788888864 478888888888888876552 222 23445688999999999999999999
Q ss_pred HHHHHHHhhh--CcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhccCC
Q 006669 414 AVTAILNLSI--YENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQNGS 489 (636)
Q Consensus 414 Av~aL~nLs~--~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~~~ 489 (636)
++..|.+|-. ..+.+..++. +-+|..++.+|.+....+|-.+.-.|..|+.+..+..+++.- +++..|..++.+..
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999876 3455666665 789999999999888888888999999999888877777665 99999999997531
Q ss_pred ----HHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcC---CCH--------H--HHHHHHHHHHHHhcC----
Q 006669 490 ----TRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTD---SRN--------C--MVDEALTILSVLASN---- 547 (636)
Q Consensus 490 ----~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~---~~~--------~--~~~~Al~~L~~La~~---- 547 (636)
.-+..+++..|-||..++ .|+..+.+.+.||.|.++|.. .+. . -+-.++.++..|...
T Consensus 222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~ 301 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS 301 (970)
T ss_pred CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 246889999999998766 788889999999999988853 221 1 123456666666551
Q ss_pred ---hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhccChHHHHHHHH
Q 006669 548 ---PEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLSLCKRDTENLACISR 598 (636)
Q Consensus 548 ---~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~i~~ 598 (636)
..++.++.+.+++..|..++.+. ...+...+.-++.++.+++..+...+..
T Consensus 302 ~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 302 SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 12455778889999999888664 4577888888899999988888777754
No 63
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.06 E-value=0.00044 Score=76.36 Aligned_cols=149 Identities=18% Similarity=0.116 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHH
Q 006669 448 SMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKM 525 (636)
Q Consensus 448 ~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~l 525 (636)
+...+..|+-++.+++.. +.-+.......++.+||.++.+++..++..++++|.||...- +-|..+++.|+|..+.++
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 444554455555554422 112222344578999999999999999999999999998755 559999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcChhhHH--HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHH
Q 006669 526 LTDSRNCMVDEALTILSVLASNPEAKI--AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACI 596 (636)
Q Consensus 526 L~~~~~~~~~~Al~~L~~La~~~~~~~--~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i 596 (636)
+.+.+..++..++++|.++.-+.+... +..+.-.-..++.+.....+.++|.+...|.|+..+..+...-+
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfl 542 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFL 542 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 999999999999999999998655433 33333334566778888899999999999999998765544444
No 64
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.001 Score=77.85 Aligned_cols=270 Identities=20% Similarity=0.220 Sum_probs=163.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhc----CCChHHHHHHHHHHHHhhhC-cch
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLT----TDDVMTQEHAVTAILNLSIY-ENN 427 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~----s~d~~~~e~Av~aL~nLs~~-~~~ 427 (636)
.+.+.+.+..++..++..|++.+...+...+.++...-.. ..+|.++..+. .+|...-..+..+|-.|... +..
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 3344555555555599999999988877654444333332 45666666664 35555556666666666552 221
Q ss_pred -HHHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHHccCCCc-------------------------------------
Q 006669 428 -KGLIMLAGAIPSIVQILRAG--SMEARENAAATLFSLSLLDE------------------------------------- 467 (636)
Q Consensus 428 -k~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~------------------------------------- 467 (636)
+..+ ...|.....+.++. +..+|..|..+|..++....
T Consensus 241 l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 241 LRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 1111 11233333444333 35556666655555543210
Q ss_pred ------hhH-------HHHhc-C---chHH----HHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH---hchHHHHH
Q 006669 468 ------NKI-------IIGAS-G---AIPA----LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR---AGIISALL 523 (636)
Q Consensus 468 ------~~~-------~i~~~-g---~i~~----Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~---~g~v~~Lv 523 (636)
+.. .+.-. | .+|+ +-.++++.++.-++.|+.||.-++. ++...+. ..+++.++
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E---Gc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE---GCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHH
Confidence 000 00001 1 2333 3345556677788888888777653 3333322 34778888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhccChHHHHHHHHcC
Q 006669 524 KMLTDSRNCMVDEALTILSVLASN--PEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAILLSLCKRDTENLACISRLG 600 (636)
Q Consensus 524 ~lL~~~~~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G 600 (636)
..|.++++.++..|+.++..++.+ |+-. .-...-.++.|+..+.+ .+++++.+|+.+|.++....+...-.=.-.+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iq-k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~ 474 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQ-KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG 474 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHH-HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 888999999999999999999984 3332 22334567788888876 5789999999999998875543322222234
Q ss_pred ChH-HHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 601 AVI-PLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 601 ~i~-~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
.+. .|..+.+++++.+++.|..++.....
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 566 66677888999999999998876643
No 65
>PF05536 Neurochondrin: Neurochondrin
Probab=98.02 E-value=0.00012 Score=82.56 Aligned_cols=188 Identities=21% Similarity=0.192 Sum_probs=134.8
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCCCc----hhHHHHhcCchHHHHhhhccC-------CHHHHHHHHHHHHhhhh
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLLDE----NKIIIGASGAIPALVDLLQNG-------STRGRKDAATALFNLCI 505 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~LL~~~-------~~~~k~~A~~aL~nL~~ 505 (636)
+...+.+|+..+.+-+-.++..+.++...++ .+..+.++=+.+.|-.||+.+ ....+.-|+..|..+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5566778888776677777777888766544 244577775578899999874 24566778888889988
Q ss_pred ccch--HHHHHHhchHHHHHHHhcCCCH-HHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 006669 506 YMGN--KGRAVRAGIISALLKMLTDSRN-CMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582 (636)
Q Consensus 506 ~~~n--~~~lv~~g~v~~Lv~lL~~~~~-~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 582 (636)
.++. ...++ +-||.|++.+...+. .+++.|+.+|..++++++|+..+.+.|+++.|++.+.+ .+...+.|..+|
T Consensus 87 ~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 87 DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 6544 24444 579999999988666 99999999999999999999999999999999999987 577899999999
Q ss_pred HHhhccChHHHHHHH---HcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 583 LSLCKRDTENLACIS---RLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 583 ~~L~~~~~~~~~~i~---~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
.+++.........-. -..+++.|...........+-.+..+|..+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 999875442111100 012344555555544444454444444433
No 66
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.96 E-value=7.6e-06 Score=59.23 Aligned_cols=43 Identities=40% Similarity=0.891 Sum_probs=38.4
Q ss_pred cCccchhhccCCeecC-CCchhhhHHHHHHHcCCCCCCCCCCcc
Q 006669 259 LCPISLELMRDPVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQK 301 (636)
Q Consensus 259 ~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~~~~cP~~~~~ 301 (636)
.|||+++.+.+|+.++ +||+|++.++.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888877 999999999999998777889999864
No 67
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.96 E-value=0.00037 Score=73.83 Aligned_cols=263 Identities=16% Similarity=0.168 Sum_probs=179.1
Q ss_pred HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhC-cc
Q 006669 351 VVAIEALVRKLSSRSVEE--RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIY-EN 426 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~--~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~-~~ 426 (636)
.+.+..|++++.+++.+. +.+|.+.|..+.. .+|+..++..| ...++.+-+. +.++.+...+.+|.+|.++ ++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 356778999999887665 7888888887753 57899998877 4555554443 4577888889999999995 45
Q ss_pred hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC--chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669 427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD--ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504 (636)
Q Consensus 427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~ 504 (636)
.+..+++.|++..++--.+..++....+++-+|.|.+... +.+..|++..+-+-|.-+--+.+.-.+..|+.+..-|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 5778889999999988888888999999999999987654 46778888877777777766667778899999999998
Q ss_pred hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669 505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584 (636)
Q Consensus 505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 584 (636)
.+.+.-..+-+.|.+..+-.++.+-+++.-.. .-.....++ -..-+..|+-+|.+.--+.+ ++.+..
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS~R~EAq--~i~AF~- 402 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDSNRLEAQ--CIGAFY- 402 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhcchhhhh--hhHHHH-
Confidence 87776555555664433333333222221100 000001111 01247778888874333333 233322
Q ss_pred hhcc----Ch-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 585 LCKR----DT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 585 L~~~----~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
+|.. .. .....+-+-|++..|.++..+.+..+..-|..+|+.|.+
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 3321 11 122334567999999999998888888999999999865
No 68
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.4e-06 Score=82.21 Aligned_cols=54 Identities=22% Similarity=0.418 Sum_probs=47.3
Q ss_pred CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcc
Q 006669 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLT 308 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~ 308 (636)
.+..+.|-+|++-++||--+||||.||=+||..|+.+ ...||.|++++++..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3466999999999999999999999999999999985 45599999998876654
No 69
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.94 E-value=0.00079 Score=74.45 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=152.4
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHH
Q 006669 363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIV 441 (636)
Q Consensus 363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv 441 (636)
..+.+....|+-+++.+++.-..-|.-+....++.+||.+|..++..++..++.+|.||.. ....|..+.+.|+|..+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 3467778888888888887555555555666789999999988888999999999999998 677799999999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHccCCCchhHHHH--hcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHh--
Q 006669 442 QILRAGSMEARENAAATLFSLSLLDENKIIIG--ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRA-- 516 (636)
Q Consensus 442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~-- 516 (636)
..+.+.++..+.++.|+|.++.+..+...+.. ..=....++.+..+.++.+++.+...|+||..+. +.-..+++.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 99999999999999999999999877654432 2234467788888899999999999999997653 333444441
Q ss_pred chHHHHHHHh--cCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc--------CCCHHHHHHHHHHHHHhh
Q 006669 517 GIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR--------TGLPRNKENAAAILLSLC 586 (636)
Q Consensus 517 g~v~~Lv~lL--~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~--------~~s~~~ke~A~~~L~~L~ 586 (636)
..+......+ ...++ +...-...+.++...-+....-.-.|..+.++-.-. +......-++.+.+.++.
T Consensus 548 ~~ld~i~l~lk~a~~~p-i~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~ 626 (678)
T KOG1293|consen 548 DVLDKIDLQLKIAIGSP-ILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLT 626 (678)
T ss_pred HHHHHHHHHHhhccCCc-eehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcc
Confidence 1222211111 12222 333334444444443333322222344444432211 223455667888888876
Q ss_pred cc
Q 006669 587 KR 588 (636)
Q Consensus 587 ~~ 588 (636)
..
T Consensus 627 ~~ 628 (678)
T KOG1293|consen 627 TT 628 (678)
T ss_pred CC
Confidence 53
No 70
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00089 Score=78.37 Aligned_cols=236 Identities=19% Similarity=0.180 Sum_probs=152.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~~I 431 (636)
..+.+-.+|.|.++..|..|+..|..++.+..+.-.... ...++.+++.|..+++.++..|+.++..++.+ ...-..-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 466777888999999999999999999987655433322 24677788889999999999999999999983 2222222
Q ss_pred HHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHh--cCchH-HHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 432 MLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGA--SGAIP-ALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--~g~i~-~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
...-.++.|+..+.+. ++.++.+|+.++.|++...... .+.. .+.+. .|..++.++++.+++.++++|...+...
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 3345677888888765 7899999999999997654322 2221 14444 3333556788999999999999987644
Q ss_pred chHHHHHHhchHHHHHHHhcCCC-HHHHHHHHHHHHHHhc--ChhhHHHHHh--cCcHHHHHHH---HcCCCHHHHHHHH
Q 006669 508 GNKGRAVRAGIISALLKMLTDSR-NCMVDEALTILSVLAS--NPEAKIAIVK--ASTIPVLIVL---LRTGLPRNKENAA 579 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~~~-~~~~~~Al~~L~~La~--~~~~~~~i~~--~g~i~~Lv~l---L~~~s~~~ke~A~ 579 (636)
+.+-.-.=.-.+|.|.+.|...+ .+.++....++..++. ..-|++.+.. ...+..+..+ ....+...++.-.
T Consensus 507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~ 586 (1075)
T KOG2171|consen 507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMI 586 (1075)
T ss_pred hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHH
Confidence 33222222457888888887643 4444443333333222 2334444432 1234444443 1223455667777
Q ss_pred HHHHHhhccCh
Q 006669 580 AILLSLCKRDT 590 (636)
Q Consensus 580 ~~L~~L~~~~~ 590 (636)
....++|+--+
T Consensus 587 ~~warmc~ilg 597 (1075)
T KOG2171|consen 587 AFWARMCRILG 597 (1075)
T ss_pred HHHHHHHHHhc
Confidence 77777776433
No 71
>PTZ00429 beta-adaptin; Provisional
Probab=97.93 E-value=0.0028 Score=73.81 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRS-LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
.+..|-+.|.+.+...+..|++.+-. ++.+. +.- .+.+.+++++.+.|.+.+.-..-.|.+++........+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL 105 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL 105 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH
Confidence 46667788888888888888876554 44432 221 24567888899999998888888888887632222212
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~ 511 (636)
++..+.+=+.+.++.+|-.|+++|.++-..+ +.+ -.++++...+.+.++-+++.|+.++.++-...+ .
T Consensus 106 ----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--e 173 (746)
T PTZ00429 106 ----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--Q 173 (746)
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--c
Confidence 3566677777889999999999999875421 111 245667777888899999999999999865443 2
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 584 (636)
.+.+.|.++.|.++|.+.++.++..|+.+|..+.......-. ...+.+..|+..|..-++..+-....+|..
T Consensus 174 lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 174 LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 344578899999999999999999999999999864322211 223446666776666667777665555543
No 72
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.89 E-value=7.8e-06 Score=80.86 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=58.3
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHH
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWC 321 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~ 321 (636)
-.-++|-||.+.++-|++++||||||.-||..++. ++..||+|+......-+..+..++..++.+.
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 34579999999999999999999999999999997 4789999999988888888888888777764
No 73
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.89 E-value=4.9e-06 Score=64.23 Aligned_cols=58 Identities=22% Similarity=0.382 Sum_probs=32.3
Q ss_pred cccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHH
Q 006669 257 DFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLI 317 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI 317 (636)
-++|++|.++|++||. -.|.|.||+.||.+.+. ..||+|..|-...++.-|..|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 3689999999999995 79999999999987553 3499999998888998898887765
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.88 E-value=0.0012 Score=71.92 Aligned_cols=219 Identities=19% Similarity=0.031 Sum_probs=115.4
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 353 AIEALVRKLS-SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
+++.++..|. ..+.++...++..+. ...++ .++..|+..|...++.++..++.+|..+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 4666666663 344544443333322 11111 1256666666666666666666666432
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~ 511 (636)
...++.+.|+..|++.++.++..++.++... .....+.|..+|++.++.++..|+.+|..+-.
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 2234455666666666666666555554441 11234566666666666666666666666532
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh----c------------------CcHHHHHHHHcC
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK----A------------------STIPVLIVLLRT 569 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~----~------------------g~i~~Lv~lL~~ 569 (636)
...++.|...+.+.++.++..|+..|..+-. ++....+.. . .+++.|..+++.
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d 251 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA 251 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC
Confidence 2244555555666666666666666655432 222111111 1 223344444433
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 570 ~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
. .++..++.+|..+. ...+++.|...+.+ +..++.|.+.++.|-.
T Consensus 252 ~--~vr~~a~~AlG~lg-----------~p~av~~L~~~l~d--~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 252 A--ATRREALRAVGLVG-----------DVEAAPWCLEAMRE--PPWARLAGEAFSLITG 296 (410)
T ss_pred h--hhHHHHHHHHHHcC-----------CcchHHHHHHHhcC--cHHHHHHHHHHHHhhC
Confidence 2 24444444444333 23467777776643 3488888888888754
No 75
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.87 E-value=0.0046 Score=66.51 Aligned_cols=271 Identities=22% Similarity=0.228 Sum_probs=179.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
.+.+...+-+.+.+++..+.+.+|.+.. +.+.-..+.+.+.=-.++..|..+ +...+++|+..+..+.....+...+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 3444434444558889899999999886 455666677767555667777654 3456789999888876643333222
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~ 511 (636)
..|.+..++.+..+.+...+..|..+|..++..+ -..+...|++..|++.+.+++.......+.++..+..++..|.
T Consensus 106 -~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 106 -PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred -CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 4577889999998888889999999999998754 3456677999999999998877777888888888877777776
Q ss_pred HHHHhc----hHHHHHHH----hcCCC--HHHHHHHHHHHHHHhcChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHH
Q 006669 512 RAVRAG----IISALLKM----LTDSR--NCMVDEALTILSVLASNPEAKIAIVKA--STIPVLIVLLRTGLPRNKENAA 579 (636)
Q Consensus 512 ~lv~~g----~v~~Lv~l----L~~~~--~~~~~~Al~~L~~La~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~ke~A~ 579 (636)
.+...- .+.++.+. ..+.. ..+...+..+...|-+++ |--.+... .++..|+..|...++.+++...
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-ceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 554422 33334443 11112 233333333333443333 22222222 4677777777777777777776
Q ss_pred HHHHHhhcc------------------C--------------------------h---H-H----HHHHHHcCChHHHHH
Q 006669 580 AILLSLCKR------------------D--------------------------T---E-N----LACISRLGAVIPLTE 607 (636)
Q Consensus 580 ~~L~~L~~~------------------~--------------------------~---~-~----~~~i~~~G~i~~L~~ 607 (636)
.++..+-.- + . + + ...+++.|.++.|+.
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 666655310 0 0 0 0 112368899999999
Q ss_pred hhhcC-CHHHHHHHHHHHHHhhc
Q 006669 608 LTKSG-TERAKRKATSLLEHLRK 629 (636)
Q Consensus 608 Ll~~g-~~~~k~kA~~lL~~l~~ 629 (636)
++.+. ++...+||+-+|..+-+
T Consensus 342 li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHHH
Confidence 99987 88889999999986643
No 76
>PTZ00429 beta-adaptin; Provisional
Probab=97.86 E-value=0.0042 Score=72.29 Aligned_cols=185 Identities=14% Similarity=0.076 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.+..+.+.+...++.+|..|+-++..+...+++ .+.+.|.++.|..+|...|+.++.+|+.+|..+....... .-.
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l 216 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IES 216 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHH
Confidence 355667778889999999999999998776553 4456688999999999999999999999999997633222 112
Q ss_pred HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHH
Q 006669 433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKG 511 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~ 511 (636)
..+.+..++..|..-++-.+.....+|......++ .. ....+..+...|++.++.+...|+.++.++....+ ...
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~--~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK--ES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc--HH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence 23445666666665555556556666644322111 11 12456777778888888999999999998875421 111
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
..+-....++|+.++ +.+++++-.++..+..+..
T Consensus 293 ~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 293 ERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence 111112335566654 3455666666655554443
No 77
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.85 E-value=1.4e-05 Score=55.73 Aligned_cols=39 Identities=49% Similarity=1.073 Sum_probs=35.6
Q ss_pred CccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCC
Q 006669 260 CPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKT 298 (636)
Q Consensus 260 CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~ 298 (636)
|||+++..++|+++++||.|+..++.+|+..+...||.+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998666779975
No 78
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.6e-05 Score=91.67 Aligned_cols=72 Identities=31% Similarity=0.476 Sum_probs=66.7
Q ss_pred CCCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669 252 LIIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH 324 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n 324 (636)
.++|++|.-|++..+|+|||++| +|+|-||+.|+.++-. ..+.|.||++|....++||..+|.-|+.|....
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 9999999999999874 678999999999999999999999999997653
No 79
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=3.2e-05 Score=84.02 Aligned_cols=75 Identities=29% Similarity=0.421 Sum_probs=66.6
Q ss_pred CCCCCCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669 249 PDVLIIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH 324 (636)
Q Consensus 249 ~~~~~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n 324 (636)
.+..++|++|.-|++..+|+|||++| +|.|.||+.|..++-+ +.+.|..+.|+...+++||..||+-|-.+....
T Consensus 846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 34678999999999999999999976 5789999999999864 689999999999999999999999998886543
No 80
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.80 E-value=7.4e-06 Score=59.72 Aligned_cols=40 Identities=35% Similarity=0.760 Sum_probs=33.7
Q ss_pred cCccchhhcc---CCeecCCCchhhhHHHHHHHcCCCCCCCCCC
Q 006669 259 LCPISLELMR---DPVIVATGQTYERSYIQRWIDCGNVTCPKTQ 299 (636)
Q Consensus 259 ~CPis~~~m~---dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~ 299 (636)
.||||++-|. .++.+++||.|.+.||.+|+.. +.+||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 5677999999999999999986 46999985
No 81
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0006 Score=75.20 Aligned_cols=269 Identities=14% Similarity=0.099 Sum_probs=179.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH-h---cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIA-D---AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN 427 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~-e---~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~ 427 (636)
..++.|.+.|.+.+...++-|..+|..++.++.+--..=. . .-.+|.++.+.++.++.++.+|+.++-..-.. .+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-QT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-Cc
Confidence 4689999999999888899999999999875543221100 0 13689999999999999999999988665442 23
Q ss_pred HHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669 428 KGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY 506 (636)
Q Consensus 428 k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~ 506 (636)
+..+.. ...++.+..+-+..++++|.+.+..|..|......|..---.+.++-++..-++.+..+...|+.-...++..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 333333 3466777777677799999999999999876544332222226777777777788888888888888888776
Q ss_pred cchHHHHHH--hchHHHHHHHhcCCC------------------------------------------------------
Q 006669 507 MGNKGRAVR--AGIISALLKMLTDSR------------------------------------------------------ 530 (636)
Q Consensus 507 ~~n~~~lv~--~g~v~~Lv~lL~~~~------------------------------------------------------ 530 (636)
+-.+..+.. ...||.|++-+.-.+
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 644444433 457888877542111
Q ss_pred --HHHHHHHHHHHHHHhcChhhHHHHHhcCc----HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH--cCCh
Q 006669 531 --NCMVDEALTILSVLASNPEAKIAIVKAST----IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR--LGAV 602 (636)
Q Consensus 531 --~~~~~~Al~~L~~La~~~~~~~~i~~~g~----i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~--~G~i 602 (636)
..++..++++|-.|+. +..... +|.|-+.|.+.....||.++-+|..++.+.-. -++. .-.+
T Consensus 367 ~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLi 436 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELI 436 (885)
T ss_pred ccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHH
Confidence 0122222222222222 122233 44444555566678899999888888864322 2222 1358
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 603 IPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 603 ~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
+.|+.++.+..+-+|....|.|.....|.
T Consensus 437 p~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 437 PFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 88899999999999999999998877664
No 82
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.76 E-value=4.2e-05 Score=54.76 Aligned_cols=40 Identities=45% Similarity=0.569 Sum_probs=38.1
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 006669 383 STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLS 422 (636)
Q Consensus 383 ~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs 422 (636)
+++++..+.+.|++|.|+.+|++.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999997
No 83
>PHA02926 zinc finger-like protein; Provisional
Probab=97.72 E-value=2.4e-05 Score=75.36 Aligned_cols=51 Identities=14% Similarity=0.351 Sum_probs=42.0
Q ss_pred CCCCcccCccchhhccC---------CeecCCCchhhhHHHHHHHcCC-----CCCCCCCCcccc
Q 006669 253 IIPADFLCPISLELMRD---------PVIVATGQTYERSYIQRWIDCG-----NVTCPKTQQKLE 303 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~d---------Pv~~~~G~t~~r~~I~~w~~~~-----~~~cP~~~~~l~ 303 (636)
...++..|+||++...+ +++.+|||+||..||.+|.... ..+||.|++.+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45678899999998744 5788999999999999999742 346999999775
No 84
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.71 E-value=0.0031 Score=66.69 Aligned_cols=230 Identities=15% Similarity=0.125 Sum_probs=164.3
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 356 ALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 356 ~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.|-..+++ .+.+-..-|+++|..+.+ -++.|..+..+.++..++..+.+ .+..+|.+.+-+++-|+.++...+.+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~ 238 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLK 238 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHh
Confidence 34444444 455667778899999997 46799999999999999998843 457788999999999999888888887
Q ss_pred HhCChHHHHHHHhcCc-HHHHHHHHHHHHHccCCCc-------hhHHHHhcCchHHHHhhhccC---CHHHHHHHH----
Q 006669 433 LAGAIPSIVQILRAGS-MEARENAAATLFSLSLLDE-------NKIIIGASGAIPALVDLLQNG---STRGRKDAA---- 497 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~-------~~~~i~~~g~i~~Lv~LL~~~---~~~~k~~A~---- 497 (636)
..+.|+.|..++++.. ..+..-.++++.|+....+ ....|...++ +.-++.|..+ +++...+.-
T Consensus 239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e 317 (442)
T KOG2759|consen 239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTE 317 (442)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 7899999999999875 6677888899999876552 2234444444 4445555543 222222111
Q ss_pred ---HHHHhhhhcc------------------------chHHHHHH--hchHHHHHHHhcC-CCHHHHHHHHHHHHHHhc-
Q 006669 498 ---TALFNLCIYM------------------------GNKGRAVR--AGIISALLKMLTD-SRNCMVDEALTILSVLAS- 546 (636)
Q Consensus 498 ---~aL~nL~~~~------------------------~n~~~lv~--~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~- 546 (636)
.-...|++.+ +|..++-+ ..++..|+++|.. .++.+...|+.=+.....
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~ 397 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRH 397 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh
Confidence 1112233221 23444444 3488899999965 446666666666666655
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 547 NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 547 ~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
+|+|+..+.+.|+=..+.++|.+.+|++|=+|+.++-.|..
T Consensus 398 yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 398 YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999988876654
No 85
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0054 Score=65.08 Aligned_cols=238 Identities=16% Similarity=0.144 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC------cch----HHHHHHhCChHH
Q 006669 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY------ENN----KGLIMLAGAIPS 439 (636)
Q Consensus 370 ~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~------~~~----k~~I~~~G~I~~ 439 (636)
...+..+..+|. -|+---.+++.++|+.|+.+|.+++.++....+..|..|... .+. -..+++.+.++.
T Consensus 102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 345666777774 677777889999999999999999999999999999999752 122 234456788899
Q ss_pred HHHHHhcC------cHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccC-C-HHHHHHHHHHHHhhhhcc-ch
Q 006669 440 IVQILRAG------SMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNG-S-TRGRKDAATALFNLCIYM-GN 509 (636)
Q Consensus 440 Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~-~-~~~k~~A~~aL~nL~~~~-~n 509 (636)
|+.-+..- ......++.+++.|+... ++....+++.|.+.-|+..+... . ...+..|...|.-+..+. +|
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 88876532 234567888888898665 45777888888888888865543 2 355677777777766555 47
Q ss_pred HHHHHHhchHHHHHHHhcC---------CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 006669 510 KGRAVRAGIISALLKMLTD---------SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA 580 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~ 580 (636)
+...-...+|..+++-+.- ...++.++-..+|..+...++++..+....++....-+++. ....+..|..
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 7777777888888877631 24567788888888888999999999998888877777765 3456778899
Q ss_pred HHHHhhccCh--HHHHHHHHcCChHHHHHhh
Q 006669 581 ILLSLCKRDT--ENLACISRLGAVIPLTELT 609 (636)
Q Consensus 581 ~L~~L~~~~~--~~~~~i~~~G~i~~L~~Ll 609 (636)
+|-....+.+ .+|..+++.++...+.-+.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 9988887766 7888888887777666543
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.67 E-value=6e-05 Score=78.90 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=46.0
Q ss_pred ccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669 258 FLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN 310 (636)
Q Consensus 258 f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 310 (636)
+.|.|++++-++||+ .-+||.|+|+.|++++.+ +.+||+|+++++..+++|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence 579999999999998 458999999999999985 5789999999988887763
No 87
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00078 Score=73.16 Aligned_cols=228 Identities=21% Similarity=0.205 Sum_probs=158.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cChhhHHHHHh-cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSK---RSTDNRIIIAD-AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK 428 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~---~~~~~r~~i~e-~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k 428 (636)
..+-|..+|+.++.+++..+=..+..+-. .+|.. .+ ...++.++.-+.+.++.+|..|+..+.....-....
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~ 284 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence 45567888888888888554443333221 22221 12 246788999999999999999999999887755544
Q ss_pred HHHHHhCChHHHHHHHhcCcH-HHHHHHHHH---HHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669 429 GLIMLAGAIPSIVQILRAGSM-EARENAAAT---LFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~-e~~~~Aa~~---L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~ 504 (636)
-...-+|++..++..+.+... ..++.+..+ |..+......+..+--...+..|...+.+...+++..++..+..|-
T Consensus 285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~ 364 (675)
T KOG0212|consen 285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLY 364 (675)
T ss_pred hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 555557777777777765533 344433322 3333333333322322246778888888888999999999999998
Q ss_pred hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669 505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584 (636)
Q Consensus 505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 584 (636)
...+|+-..-...+.+.|+.-|++.++.++..++.+|+++|.++....- -.++..|+++......-.+..+.-++..
T Consensus 365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRq 441 (675)
T KOG0212|consen 365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQ 441 (675)
T ss_pred hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence 8888877777788999999999999999999999999999997765522 1234455555555555667778888888
Q ss_pred hhc
Q 006669 585 LCK 587 (636)
Q Consensus 585 L~~ 587 (636)
||.
T Consensus 442 lC~ 444 (675)
T KOG0212|consen 442 LCL 444 (675)
T ss_pred HHH
Confidence 885
No 88
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.8e-05 Score=72.26 Aligned_cols=52 Identities=23% Similarity=0.554 Sum_probs=43.8
Q ss_pred cccCccchhhccC--CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669 257 DFLCPISLELMRD--PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP 309 (636)
Q Consensus 257 ~f~CPis~~~m~d--Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 309 (636)
-|.||||++-.+. ||..-|||.||+.||..-++. ...||+|+..+.+..+.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 3999999999854 777899999999999999985 578999998887766543
No 89
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.61 E-value=0.00077 Score=67.45 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=115.9
Q ss_pred hcCcHHHHHHHHHHHHHccCCC---chhHHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchH
Q 006669 445 RAGSMEARENAAATLFSLSLLD---ENKIIIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGII 519 (636)
Q Consensus 445 ~~~~~e~~~~Aa~~L~~Ls~~~---~~~~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v 519 (636)
.+.+++.+..|+..|..+...+ ++...+... ..+..+...+.+....+.+.|+.++..|+..-+..-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4468999999999988886544 233333322 45566777776666778889999999988655444332334589
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHH--
Q 006669 520 SALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACIS-- 597 (636)
Q Consensus 520 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~-- 597 (636)
|.|++.+.+...-+.+.|..+|..++.+...-..+ .++.+...+.+.++..|..++..|..+....+.....+.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999988999999999999998865411111 145556667788999999999999888776551111111
Q ss_pred --HcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 598 --RLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 598 --~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
-...++.+...+.++++.+|+.|..++..+.+.
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 134678888999999999999999999998653
No 90
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.55 E-value=0.00015 Score=51.87 Aligned_cols=40 Identities=33% Similarity=0.321 Sum_probs=37.6
Q ss_pred cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 507 ~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
++++..+++.|+||.|+++|.+.+..+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5688999999999999999999999999999999999974
No 91
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.52 E-value=0.0008 Score=67.33 Aligned_cols=184 Identities=19% Similarity=0.137 Sum_probs=114.9
Q ss_pred hcCCCHHHHHHHHHHHHHHhccC--hhhHHHHHhc--CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCC
Q 006669 361 LSSRSVEERRAAVAEIRSLSKRS--TDNRIIIADA--GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGA 436 (636)
Q Consensus 361 L~s~~~~~~~~Al~~L~~La~~~--~~~r~~i~e~--g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~ 436 (636)
-++.+++.+..|+..|+.+.+.+ ......+.+. ..+..+...+.+....+...|+.++..|+..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 36789999999999999998876 3333333321 4556677777766677889999999998873222211112346
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHHHH
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRAVR 515 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~lv~ 515 (636)
++.|++.+.++...+++.|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+....+ +...+-.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 788888888888889999999999886644311111 14556666778899999999999988765444 1111111
Q ss_pred ----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Q 006669 516 ----AGIISALLKMLTDSRNCMVDEALTILSVLASNP 548 (636)
Q Consensus 516 ----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 548 (636)
..+++.+...+.|.++++++.|-.+++.+..+-
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 447888999999999999999999999987643
No 92
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.46 E-value=0.0001 Score=75.55 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=42.0
Q ss_pred CcccCccchhh-ccCCe---ec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcc
Q 006669 256 ADFLCPISLEL-MRDPV---IV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLT 308 (636)
Q Consensus 256 ~~f~CPis~~~-m~dPv---~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~ 308 (636)
++-.||+|+.- ...|- ++ +|||+||++||..+|..+...||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 45679999873 34553 23 79999999999999988888999999988776643
No 93
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0029 Score=64.38 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=133.3
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHh
Q 006669 438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRA 516 (636)
Q Consensus 438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~ 516 (636)
..++++|.+.++.++..|...+.+++.. ..+...... ..++.+.+++....+ ...|+++|.|++...+-+..+++.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678899999999999999999999876 333333333 678889999887655 778999999999988889998888
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--c----CcHHHHHHHHcCC--CH-HHHHHHHHHHHHhhc
Q 006669 517 GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--A----STIPVLIVLLRTG--LP-RNKENAAAILLSLCK 587 (636)
Q Consensus 517 g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~----g~i~~Lv~lL~~~--s~-~~ke~A~~~L~~L~~ 587 (636)
.+..++.++.++...+.+..+.+|.||+..++...++.. . .++..++...-.. +. .--++-+.++.+|.+
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888999999888788999999999999998876655432 2 4555555544332 22 223567888888887
Q ss_pred cChHHHHHHHHcC--ChHHHHHhhhcCCHHH-HHHHHHHHHHhhc
Q 006669 588 RDTENLACISRLG--AVIPLTELTKSGTERA-KRKATSLLEHLRK 629 (636)
Q Consensus 588 ~~~~~~~~i~~~G--~i~~L~~Ll~~g~~~~-k~kA~~lL~~l~~ 629 (636)
.. ..+..+.... ....|..+-+ .+..+ |...+.+|++++-
T Consensus 162 ~~-~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cF 204 (353)
T KOG2973|consen 162 FE-AGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCF 204 (353)
T ss_pred hh-hhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhc
Confidence 43 4444443322 3445666655 45555 4566778888654
No 94
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.45 E-value=0.013 Score=64.83 Aligned_cols=232 Identities=20% Similarity=0.235 Sum_probs=153.0
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC-----ChHHHHHHHHHHHHhhh-CcchHHHHHH-hC
Q 006669 363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-----DVMTQEHAVTAILNLSI-YENNKGLIML-AG 435 (636)
Q Consensus 363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~-----d~~~~e~Av~aL~nLs~-~~~~k~~I~~-~G 435 (636)
..+..+..+|+++|.|....++..|..+.+.|..+.++..|+.. +.++..-...+|+-++. ....+..+.+ .+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45788899999999999999999999999999999999999865 67777788888877765 4555555554 68
Q ss_pred ChHHHHHHHhc-----------------CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC---------C
Q 006669 436 AIPSIVQILRA-----------------GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG---------S 489 (636)
Q Consensus 436 ~I~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~---------~ 489 (636)
++..++..|.. ...++...++.++||+.........--....++.|+.++..- .
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 88888877631 134556788899999966543222111124455555544311 2
Q ss_pred HHHHHHHHHHHHhhhhcc-ch-------HH----HHHHhchHHHHHHHhcC-----CC---HHHHHHHHHHHHHHhcC-h
Q 006669 490 TRGRKDAATALFNLCIYM-GN-------KG----RAVRAGIISALLKMLTD-----SR---NCMVDEALTILSVLASN-P 548 (636)
Q Consensus 490 ~~~k~~A~~aL~nL~~~~-~n-------~~----~lv~~g~v~~Lv~lL~~-----~~---~~~~~~Al~~L~~La~~-~ 548 (636)
......++.+|.|+-... .. .. .......+..|+++|.. .. .+...-.+.+|..++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 456777888888872111 00 00 01123367777777632 11 13344456777777775 3
Q ss_pred hhHHHHHh----------------cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHH
Q 006669 549 EAKIAIVK----------------ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA 594 (636)
Q Consensus 549 ~~~~~i~~----------------~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~ 594 (636)
..|..+.. ...-..|++++.+..+..|..++..|+.||..+.....
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v 344 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFV 344 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence 34433321 12457899999887799999999999999986654333
No 95
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.44 E-value=0.018 Score=61.19 Aligned_cols=185 Identities=25% Similarity=0.298 Sum_probs=132.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
..+..+++.+.+.+...+..|+..+..+.. .-+++.+..+|.+.++.++..|+.+|.++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 468889999999888888888877554432 235789999999999999999998776553
Q ss_pred HHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHH------------HHHHHH
Q 006669 432 MLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRG------------RKDAAT 498 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~------------k~~A~~ 498 (636)
...+++.++..|. +.+..++..++.+|+.+-. ..++.+++..+.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2446889999998 4789999999999998743 235788888888765322 222222
Q ss_pred HHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHH
Q 006669 499 ALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENA 578 (636)
Q Consensus 499 aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A 578 (636)
+|..+ -+...++.+.+++.+....++..|..+|..+.... ..+.+.+...+...+...+..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 22222 12347888999998888899999999998888764 2344566666666666666665
Q ss_pred HHHHHHh
Q 006669 579 AAILLSL 585 (636)
Q Consensus 579 ~~~L~~L 585 (636)
+..|..+
T Consensus 234 ~~~l~~~ 240 (335)
T COG1413 234 LLALGEI 240 (335)
T ss_pred HHHhccc
Confidence 5555444
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.38 E-value=0.014 Score=62.80 Aligned_cols=247 Identities=16% Similarity=0.122 Sum_probs=168.7
Q ss_pred HHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC--cHHHHHHH
Q 006669 378 SLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG--SMEARENA 455 (636)
Q Consensus 378 ~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~--~~e~~~~A 455 (636)
.+-+.++.-|..+.-....+.+..++-+++.+++..+..+++.+..++..-..+.+.+.--.++.-|... +..-|++|
T Consensus 9 ~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QA 88 (371)
T PF14664_consen 9 DLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQA 88 (371)
T ss_pred HHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHH
Confidence 3334445444444433344555545555568899999999999988888888888877666666666544 46678899
Q ss_pred HHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHH
Q 006669 456 AATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVD 535 (636)
Q Consensus 456 a~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~ 535 (636)
...+..+...+++...+ -.|.+..++.+..+.+.+.+..++.+|..|+..+ -..++++|++..|++.+.++...+.+
T Consensus 89 LkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~ 165 (371)
T PF14664_consen 89 LKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISE 165 (371)
T ss_pred HHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHH
Confidence 99998876554333222 3378899999998888899999999999998754 34566799999999999887666888
Q ss_pred HHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-------CH--HHHHHHHHHHHHhhccChHHHHHHHH-cCChHHH
Q 006669 536 EALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-------LP--RNKENAAAILLSLCKRDTENLACISR-LGAVIPL 605 (636)
Q Consensus 536 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-------s~--~~ke~A~~~L~~L~~~~~~~~~~i~~-~G~i~~L 605 (636)
..+.++..+-.+|..|.-+...--+..++.-.... +. .--..+..++..+-++.+.-...-.. ..++..|
T Consensus 166 ~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL 245 (371)
T PF14664_consen 166 SLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL 245 (371)
T ss_pred HHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence 99999999999999998765433344444433221 11 12234455555555444433222222 2568888
Q ss_pred HHhhhcCCHHHHHHHHHHHHHh
Q 006669 606 TELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 606 ~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
+..+...++.+++....++-.+
T Consensus 246 v~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 246 VDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 8888888888888877766554
No 97
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.38 E-value=0.012 Score=64.13 Aligned_cols=152 Identities=27% Similarity=0.194 Sum_probs=113.7
Q ss_pred CCHHHHHHhhc-CCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669 394 GAIPVLVNLLT-TDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII 472 (636)
Q Consensus 394 g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 472 (636)
.+++.|+..|. .++..+...++.++.. ..+ ..++..++..|.+.++.++..++..|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 35788999895 4556666555544422 111 11378899999888888999999998754
Q ss_pred HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Q 006669 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI 552 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~ 552 (636)
...+..+.|+.+|.+.++.++..++.++... .....+.+..+|.+.+..+...|+.+|..+..
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 3346788999999999999998888777661 12345688889999999999999999987654
Q ss_pred HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 553 AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 553 ~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
...++.|...+.+.++.++..|+..|..+.
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 356677878888888999999988886664
No 98
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.36 E-value=0.014 Score=64.60 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=167.1
Q ss_pred HHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----------cCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHH
Q 006669 372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL----------TTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSI 440 (636)
Q Consensus 372 Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL----------~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~L 440 (636)
|+..||.+++ ++.+-..+....++..|.++- ...+..+..+|+.+|.|+.. ++..+..+.+.|..+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3556777776 445555555555566666544 23567899999999999887 67778888899999999
Q ss_pred HHHHhcC-----cHHHHHHHHHHHHHccCC-CchhHHHHhc-CchHHHHhhhccC-----------------CHHHHHHH
Q 006669 441 VQILRAG-----SMEARENAAATLFSLSLL-DENKIIIGAS-GAIPALVDLLQNG-----------------STRGRKDA 496 (636)
Q Consensus 441 v~lL~~~-----~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~LL~~~-----------------~~~~k~~A 496 (636)
++.|+.. +.+..-...++||-++.. .+.+..+.+. +++..++..|... .......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999887 788889999999988764 4566666665 7777777655421 22345678
Q ss_pred HHHHHhhhhccchHHHHHHhchHHHHHHHhc----C-----CCHHHHHHHHHHHHHHhcC-hhh-------HHHH----H
Q 006669 497 ATALFNLCIYMGNKGRAVRAGIISALLKMLT----D-----SRNCMVDEALTILSVLASN-PEA-------KIAI----V 555 (636)
Q Consensus 497 ~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~----~-----~~~~~~~~Al~~L~~La~~-~~~-------~~~i----~ 555 (636)
+..+||+..+.+....--..+.++.|+.++. . +-......++.+|.|+--. .+. ...+ .
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 8999999766544332122334444444332 1 2344566777777776210 011 0011 1
Q ss_pred hcCcHHHHHHHHcC----CC-H---HHHHHHHHHHHHhhccChHHHHHHHH----------------cCChHHHHHhhhc
Q 006669 556 KASTIPVLIVLLRT----GL-P---RNKENAAAILLSLCKRDTENLACISR----------------LGAVIPLTELTKS 611 (636)
Q Consensus 556 ~~g~i~~Lv~lL~~----~s-~---~~ke~A~~~L~~L~~~~~~~~~~i~~----------------~G~i~~L~~Ll~~ 611 (636)
....+..|+.+|.. .. . ..-.--+.+|..++..+...+..+.. ...-..|+.++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 12357778877753 11 1 22234466667777766555544432 2456789999998
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 006669 612 GTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 612 g~~~~k~kA~~lL~~l~~~ 630 (636)
..+.+|.-++.+|-.|++.
T Consensus 320 ~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CCchHHHHHHHHHHHHHhh
Confidence 8899999999999999864
No 99
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.35 E-value=0.0042 Score=66.12 Aligned_cols=179 Identities=18% Similarity=0.177 Sum_probs=140.9
Q ss_pred HHHHHhcCCHHHHHHhhcCCChHH--HHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHcc
Q 006669 387 RIIIADAGAIPVLVNLLTTDDVMT--QEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLS 463 (636)
Q Consensus 387 r~~i~e~g~i~~Lv~lL~s~d~~~--~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls 463 (636)
...|...|++..|++++.+++.+. +.+|...|..+. ..+|+..++.-| +..++.+-+.. .++.....+.+|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 345666799999999999887554 677777776654 457788888766 56666555543 6788888999999986
Q ss_pred CCCc-hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc--chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 006669 464 LLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM--GNKGRAVRAGIISALLKMLTDSRNCMVDEALTI 540 (636)
Q Consensus 464 ~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~--~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~ 540 (636)
...+ ....++..|++..++--.+..++.....++.+|.|...+. ..+.++++..+-..|.-+-.+.++-++-.|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 6544 5677888899999988888888999999999999987654 568899999999999999888888888899999
Q ss_pred HHHHhcChhhHHHHHhcCcH---HHHHHHH
Q 006669 541 LSVLASNPEAKIAIVKASTI---PVLIVLL 567 (636)
Q Consensus 541 L~~La~~~~~~~~i~~~g~i---~~Lv~lL 567 (636)
.+.|+.+.+....+-..|.+ .+++..+
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~ 360 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASL 360 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhcc
Confidence 99999998887777777754 4444443
No 100
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0025 Score=68.90 Aligned_cols=259 Identities=17% Similarity=0.166 Sum_probs=178.8
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCc
Q 006669 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGS 448 (636)
Q Consensus 370 ~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~ 448 (636)
..++..|..+++.-..-|.-+.++..++.|+.+|+.++..+.--+...+.|+.- ....+..+.+.|.|..|+..+.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 345667778888777778888899999999999998777677777788888876 5566888999999999999998888
Q ss_pred HHHHHHHHHHHHHccCCCchh--HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-ch---HHHHHH---hc-h
Q 006669 449 MEARENAAATLFSLSLLDENK--IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GN---KGRAVR---AG-I 518 (636)
Q Consensus 449 ~e~~~~Aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n---~~~lv~---~g-~ 518 (636)
...+.+..|+|..+-....+- -+....-++..++++..+....++..++..|.|+..+. .| +.-+++ .. .
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 889999999999998876543 34455567789999999888899999999999986532 22 222222 11 4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH-h-cCcHHHHHHHHc----C-----CC-------H------HH
Q 006669 519 ISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV-K-ASTIPVLIVLLR----T-----GL-------P------RN 574 (636)
Q Consensus 519 v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~-~-~g~i~~Lv~lL~----~-----~s-------~------~~ 574 (636)
...|++.+...++-..+..+.+|.+++.+.+....++ + ...+..+.++|. . ++ | ..
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 4556777766777777788888888887666544332 2 233333333321 1 00 0 00
Q ss_pred HH----------------------------H---HHHHHHHhhcc---------ChHHHHHHHHcCChHHHHHhhhcCCH
Q 006669 575 KE----------------------------N---AAAILLSLCKR---------DTENLACISRLGAVIPLTELTKSGTE 614 (636)
Q Consensus 575 ke----------------------------~---A~~~L~~L~~~---------~~~~~~~i~~~G~i~~L~~Ll~~g~~ 614 (636)
.| - -.|+..++... ..+.+..+...|.-+.|+.+....++
T Consensus 647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl 726 (743)
T COG5369 647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL 726 (743)
T ss_pred cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence 11 1 12222222110 11444555667777788888778889
Q ss_pred HHHHHHHHHHHHhh
Q 006669 615 RAKRKATSLLEHLR 628 (636)
Q Consensus 615 ~~k~kA~~lL~~l~ 628 (636)
.+++|+..+|.+|+
T Consensus 727 ~vrek~~taL~~l~ 740 (743)
T COG5369 727 IVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999885
No 101
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.076 Score=56.69 Aligned_cols=238 Identities=18% Similarity=0.214 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----hhh----HHHHHhcCCHHHHHHhhcCCC------hHHHHHH
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-----TDN----RIIIADAGAIPVLVNLLTTDD------VMTQEHA 414 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-----~~~----r~~i~e~g~i~~Lv~lL~s~d------~~~~e~A 414 (636)
+..+++.|+++|...+.++....+.-++.|...+ .+. -..+++.+.++.|+.-+..-| .....++
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 3456899999999999999999999999887543 222 234556688999998886533 3345677
Q ss_pred HHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhc----
Q 006669 415 VTAILNLSI-YENNKGLIMLAGAIPSIVQILRAG--SMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQ---- 486 (636)
Q Consensus 415 v~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~---- 486 (636)
.+.+-|+.. .++....+++.|.+.-|+.-++.. -..-+.+|..+|.-+-.+. +++...+..+++..++.-+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 888889887 667788888898887777655433 2345677888888776554 48888888889998887664
Q ss_pred cC-----CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh---hHHHHHhcC
Q 006669 487 NG-----STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE---AKIAIVKAS 558 (636)
Q Consensus 487 ~~-----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~---~~~~i~~~g 558 (636)
.+ ..+...+-..+|+.+...+.|+.+++...++....-+++. ....+-.|+.+|-....+++ +...+++.+
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 12 1234455556666666778999999998777765555543 44455678999988887766 455677777
Q ss_pred cHHHHHH-HHcCC--------C-HHHHHHHHHHHHHhhcc
Q 006669 559 TIPVLIV-LLRTG--------L-PRNKENAAAILLSLCKR 588 (636)
Q Consensus 559 ~i~~Lv~-lL~~~--------s-~~~ke~A~~~L~~L~~~ 588 (636)
++..+.. .++.+ + ...-++.+++|+++-.+
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 7777664 33332 2 34457888888877653
No 102
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00015 Score=71.62 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=46.5
Q ss_pred CCCC-CcccCccchhhccCCeecCCCchhhhHHHHH-HHcCCCCCCCCCCcccccC
Q 006669 252 LIIP-ADFLCPISLELMRDPVIVATGQTYERSYIQR-WIDCGNVTCPKTQQKLEHL 305 (636)
Q Consensus 252 ~~~p-~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~-w~~~~~~~cP~~~~~l~~~ 305 (636)
+.+| .+|.|+||++.+.+|+-.+|||.||-.||-. |.......||.|++.....
T Consensus 209 pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 209 PFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred CcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 3445 6899999999999999999999999999988 9887667799999865443
No 103
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.023 Score=65.77 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHh----cCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHH
Q 006669 367 EERRAAVAEIRSLSKRSTDNRIIIAD----AGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIV 441 (636)
Q Consensus 367 ~~~~~Al~~L~~La~~~~~~r~~i~e----~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv 441 (636)
+-..-++.+|+++.+.+++-...+.. -|-.+.+...|.+ .++.++.-|+.++.-+..+.+.-.-+++.|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 34456888999998888855443322 2677888888865 678899999999988888888888899999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc
Q 006669 442 QILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ 486 (636)
Q Consensus 442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~ 486 (636)
.+|.+. |..++.+..+|..|++..+......+.|++.-+.+++.
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh
Confidence 998654 56788899999999988877666666666666555544
No 104
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.029 Score=63.00 Aligned_cols=256 Identities=18% Similarity=0.213 Sum_probs=164.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhC-cchHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIY-ENNKGL 430 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~-~~~k~~ 430 (636)
.++.|++.|..+++.++-.|+..|..|++.+|.|--.+ -|.+.++|.. .+.=+....+.+..+|+-. |....
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK- 255 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK- 255 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-
Confidence 58889999999999999999999999999888776544 3778887754 3333455566666777763 33222
Q ss_pred HHHhCChHHHHHHHhcCc-HHHHHHHHHHHHHccCCCc--hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 431 IMLAGAIPSIVQILRAGS-MEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
..+++|..++++.. +.....+..|+...+.... +....++ -.+..|-.++.+.++..|..++-|+..+...+
T Consensus 256 ----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktH 330 (877)
T KOG1059|consen 256 ----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH 330 (877)
T ss_pred ----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence 35789999998874 5666666666654422111 1111111 14556666777888999999999999987655
Q ss_pred chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhh
Q 006669 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLC 586 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~ 586 (636)
+- .|.+ --..+++.|.+.+..++-.|+..|.-+.+ .++..+| +..|+..+... ...-+..-+.-+..+|
T Consensus 331 p~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 331 PK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred HH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 32 2221 12345778888999999999999988876 3344444 44565544332 2355666666666778
Q ss_pred ccChHHHHHHHH-cCChHHHHHhhhc-CCHHHHHHHHHHHHHhhccc
Q 006669 587 KRDTENLACISR-LGAVIPLTELTKS-GTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 587 ~~~~~~~~~i~~-~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~~ 631 (636)
+.+ +...+.. .-.+..|++|.+- |+.+...-|..++...-|..
T Consensus 401 S~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~ 445 (877)
T KOG1059|consen 401 SQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVP 445 (877)
T ss_pred hhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheech
Confidence 643 3333333 2346667777653 66777777777776655543
No 105
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.018 Score=63.78 Aligned_cols=265 Identities=18% Similarity=0.176 Sum_probs=168.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHH-HHHHHHHhhhCcchHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH-AVTAILNLSIYENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~-Av~aL~nLs~~~~~k~~I 431 (636)
..+.+.+.+++.+...+..|...+..+.++. .-..+.+.+.+..|-............. +.-+.-.+..+- ..-
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~ 209 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPP 209 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCC
Confidence 4566777778778888888888888888654 3445666777778887776544433332 111111111100 012
Q ss_pred HHhCChHHHHHHHhc---CcHHHHHHHHHHHHHccC-CCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 432 MLAGAIPSIVQILRA---GSMEARENAAATLFSLSL-LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~---~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
.+.+.++.+-.++.+ ....+|..|..+...+-. .+.+..+ -.++.++.-+.+..++.|..++..|..|..+.
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 245566666666643 346677666655554421 1211111 23455554444447899999999999999888
Q ss_pred chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH------------------------H-----HH---H
Q 006669 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK------------------------I-----AI---V 555 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~------------------------~-----~i---~ 555 (636)
+..-...-..+||.+.+.|-+..+++++.+..+|..+++..++- . .+ +
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEV 365 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeee
Confidence 88777888899999999999999999999999998887622211 0 01 1
Q ss_pred hcCcHHHHHHHHcCC----CHHHHHHHHHHHHHhhccC--hHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 556 KASTIPVLIVLLRTG----LPRNKENAAAILLSLCKRD--TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 556 ~~g~i~~Lv~lL~~~----s~~~ke~A~~~L~~L~~~~--~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
++-.+..++.+|+++ +...+..++.+..|+|.-- +....-... -.+|-|...+.+..|.+|.-|..+|..+
T Consensus 366 ~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 366 DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 222345555666543 4567788999999999754 322222222 2566666666667899999998888444
No 106
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.19 E-value=0.00034 Score=50.93 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=34.9
Q ss_pred cCccchhhc---cCCeecCCCchhhhHHHHHHHcCCCCCCCCCCc
Q 006669 259 LCPISLELM---RDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQ 300 (636)
Q Consensus 259 ~CPis~~~m---~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~ 300 (636)
.||++.+.+ .-|+++++||+|+..+|.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 388998888 358899999999999999999 45678999874
No 107
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00012 Score=74.88 Aligned_cols=70 Identities=23% Similarity=0.407 Sum_probs=55.4
Q ss_pred CCCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCccccc-CCcccchhHHHHHHHHHh
Q 006669 253 IIPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEH-LTLTPNYVLRSLISQWCT 322 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~pn~~lr~lI~~w~~ 322 (636)
.+-.+|.||||+++++-..+ -.|+|.||+.||-+-+..++..||.|++.+.. ..|.+....-.+|.+...
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 34568999999999988776 57999999999999999999999999998854 455544445667766543
No 108
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.15 E-value=0.0025 Score=53.23 Aligned_cols=86 Identities=34% Similarity=0.465 Sum_probs=69.4
Q ss_pred hHHHHHHH-hcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH
Q 006669 437 IPSIVQIL-RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR 515 (636)
Q Consensus 437 I~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~ 515 (636)
|+.|++.| +++++.++..++.+|..+- ...+++.|+.++++.++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889988 7779999999999999542 2256899999999999999999999999883 3
Q ss_pred hchHHHHHHHhcCC-CHHHHHHHHHHHH
Q 006669 516 AGIISALLKMLTDS-RNCMVDEALTILS 542 (636)
Q Consensus 516 ~g~v~~Lv~lL~~~-~~~~~~~Al~~L~ 542 (636)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45899999999774 5556788887774
No 109
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.08 E-value=0.026 Score=59.93 Aligned_cols=192 Identities=27% Similarity=0.301 Sum_probs=131.7
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG 473 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~ 473 (636)
..++.++..+.+.+..++..|...+..+. ..-+++.+..++.+.++.++..|+.+|..+ +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 46788999999888888888887754432 345789999999999999999999877665 2
Q ss_pred hcCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH-HHhc----C
Q 006669 474 ASGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILS-VLAS----N 547 (636)
Q Consensus 474 ~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~-~La~----~ 547 (636)
....++.|+.++. +.+..++..++.+|..+-.. .++..++..+.+..... +...+. .+.. -
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~---a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS---AAAALDAALLDVRAAA 169 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh---hhhhccchHHHHHHHH
Confidence 3357899999998 58899999999999987432 24788888887654322 111110 0000 0
Q ss_pred hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 548 PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 548 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
......+.....++.+...+......++..|+..|..+...+ ..+.+.+...+.+.+..++.++...|..+
T Consensus 170 ~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 170 AEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 011112233457888999999888899999999999888754 23345555555566666666665555544
No 110
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.04 E-value=0.0018 Score=54.19 Aligned_cols=86 Identities=36% Similarity=0.472 Sum_probs=69.4
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh
Q 006669 396 IPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA 474 (636)
Q Consensus 396 i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 474 (636)
||.|++.| +++++.++..|+.+|.++- ...+++.|+.+++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 7889999999999998553 124589999999999999999999999987 33
Q ss_pred cCchHHHHhhhccCC-HHHHHHHHHHHH
Q 006669 475 SGAIPALVDLLQNGS-TRGRKDAATALF 501 (636)
Q Consensus 475 ~g~i~~Lv~LL~~~~-~~~k~~A~~aL~ 501 (636)
..+++.|.+++.+.+ ..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 468899999998764 455788888773
No 111
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.01 E-value=0.00059 Score=55.52 Aligned_cols=39 Identities=33% Similarity=0.687 Sum_probs=31.3
Q ss_pred CccchhhccCC-------------eecCCCchhhhHHHHHHHcCCCCCCCCCC
Q 006669 260 CPISLELMRDP-------------VIVATGQTYERSYIQRWIDCGNVTCPKTQ 299 (636)
Q Consensus 260 CPis~~~m~dP-------------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~ 299 (636)
|+||++.|.|| +..+|||.|-..||.+|++. +.+||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99998888443 44689999999999999985 45999985
No 112
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.01 E-value=0.0005 Score=74.41 Aligned_cols=66 Identities=24% Similarity=0.512 Sum_probs=53.3
Q ss_pred CCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc-hhHHHHHHHH
Q 006669 254 IPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN-YVLRSLISQW 320 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn-~~lr~lI~~w 320 (636)
+.+++.||+|..++.||+. +.|||.||+.||..|... +..||.+.+.+......|. ...++.+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 5678999999999999999 599999999999999987 8899999887766555542 2344555544
No 113
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.018 Score=62.93 Aligned_cols=230 Identities=19% Similarity=0.167 Sum_probs=156.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHc----cCCCchhH
Q 006669 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSL----SLLDENKI 470 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~L----s~~~~~~~ 470 (636)
.||.|-.-+...++.++...+..|..|-..+...-.-.-...++.|...|.+.+.+++..+-.+|.++ .+.+..
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s-- 245 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS-- 245 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc--
Confidence 34444444445678888888888877755443222111245677888888888888887666655553 222221
Q ss_pred HHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCH-HHHHHHH---HHHHHHh
Q 006669 471 IIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRN-CMVDEAL---TILSVLA 545 (636)
Q Consensus 471 ~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~-~~~~~Al---~~L~~La 545 (636)
.+. ..++.++.-+++..+..+..|+..|.....-.++.....-.|++..++..+.+.+. .+.+.+. ..|..++
T Consensus 246 --~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 246 --MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred --cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 132 67788899999999999999999999987766665555668888888888877554 3444443 2455666
Q ss_pred cChhhHHHHHhcC-cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 006669 546 SNPEAKIAIVKAS-TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624 (636)
Q Consensus 546 ~~~~~~~~i~~~g-~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 624 (636)
+.+...+. ++.| .+..|.+.+.+....+|-.+..-+..|-.+-|...-. -.....+.|+.-+.+.++.+..++.+++
T Consensus 324 s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred hhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 66665555 4444 5678888888888889988887777776554432222 2344677888888888888888888888
Q ss_pred HHhhcc
Q 006669 625 EHLRKL 630 (636)
Q Consensus 625 ~~l~~~ 630 (636)
..++..
T Consensus 402 a~i~~s 407 (675)
T KOG0212|consen 402 ASICSS 407 (675)
T ss_pred HHHhcC
Confidence 888754
No 114
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00029 Score=79.46 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=48.4
Q ss_pred ccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669 258 FLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN 310 (636)
Q Consensus 258 f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 310 (636)
++||+|..=.+|-|++-|||.||-.||+.-+......||.|+..+...++.+-
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 79999999999999999999999999999999888999999999987776543
No 115
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.93 E-value=0.002 Score=45.53 Aligned_cols=39 Identities=36% Similarity=0.555 Sum_probs=36.2
Q ss_pred hhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 006669 384 TDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLS 422 (636)
Q Consensus 384 ~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs 422 (636)
++++..+.+.|+++.|+.+|.+++.+++..|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 358889999999999999999999999999999999987
No 116
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00049 Score=74.14 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=56.4
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHHcC----CCCCCCCCCcccccCCcccch----hHHHHHHHHHhhccc
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC----GNVTCPKTQQKLEHLTLTPNY----VLRSLISQWCTMHNI 326 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~----~~~~cP~~~~~l~~~~l~pn~----~lr~lI~~w~~~n~~ 326 (636)
+.+..||||++...=|+.+.|||.||-.||-++|.. +...||.|+..+...++.|-+ .-++-+...+..||+
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 348999999999999999999999999999887753 456799999988776665432 224447777877873
No 117
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.17 Score=52.06 Aligned_cols=271 Identities=15% Similarity=0.128 Sum_probs=169.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhh----HHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDN----RIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~----r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
|-..|...+..++.-+++.+..+..+.+.| -..++.+|..+.++.+...+|.++-..|...+..++..+..-+.|.
T Consensus 87 LQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiF 166 (524)
T KOG4413|consen 87 LQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIF 166 (524)
T ss_pred HHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhc
Confidence 333344444455555666555554443322 2234567889999999999999999999999999999888888888
Q ss_pred HhCChHHHHHH--HhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhcc-CCHHHHHHHHHHHHhhhhccc
Q 006669 433 LAGAIPSIVQI--LRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQN-GSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 433 ~~G~I~~Lv~l--L~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~-~~~~~k~~A~~aL~nL~~~~~ 508 (636)
++..+..+-.. -..-+.-+|......+..+++.+ +.....-.+|.+..|..-|+. .+.-+..+.+.....|...+.
T Consensus 167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH 246 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH 246 (524)
T ss_pred ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence 87766554322 22334556666777777665543 344444555777776665654 345567777888888988888
Q ss_pred hHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcC----hhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHH
Q 006669 509 NKGRAVRAGIISALLKMLTD--SRNCMVDEALTILSVLASN----PEAKIAIVKA--STIPVLIVLLRTGLPRNKENAAA 580 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~----~~~~~~i~~~--g~i~~Lv~lL~~~s~~~ke~A~~ 580 (636)
++..+.+.|.|..+..++.. .++--.-.++.....+-+. .-.-+++.+. -+|....+++...+|...+.|+.
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiD 326 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAID 326 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHH
Confidence 99999999999999999965 2333333344444333332 2122334332 34666777888888999999999
Q ss_pred HHHHhhccChHHHHHHHHcCC--hHHHHHhhhcCCHHH-HHHHHHHHHHhh
Q 006669 581 ILLSLCKRDTENLACISRLGA--VIPLTELTKSGTERA-KRKATSLLEHLR 628 (636)
Q Consensus 581 ~L~~L~~~~~~~~~~i~~~G~--i~~L~~Ll~~g~~~~-k~kA~~lL~~l~ 628 (636)
++..|.++. +....+...|- ...|+--..+.+..+ ++.|..+|..+.
T Consensus 327 alGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 327 ALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 999988743 44444444443 233332222223333 344445555554
No 118
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.09 Score=58.43 Aligned_cols=222 Identities=18% Similarity=0.211 Sum_probs=143.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.++.++....+....+|..|....+.+...-+..... -.+|.++.-+..........++..|..|+.....+-...
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 4566666666677778887777766654322111111 123444443333456778899999999888666666666
Q ss_pred HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669 433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR 512 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~ 512 (636)
.+..||.+.++|.+..+++++.+..+|..+...-+|.... -.+|.|++-+.+.+..+ ..+...|..=..-+
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~----- 363 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCYT-PECLDSLGATTFVA----- 363 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccch-HHHHHhhcceeeee-----
Confidence 7889999999999999999999999999998877766522 36788888887654222 22233332211111
Q ss_pred HHHhc----hHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 513 AVRAG----IISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 513 lv~~g----~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
.|++- .+|.|-+-+...+..+...++.+..|+|.--+....+.. ...+|.|-..+...-|.+|.-++.+|..+-
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 11122 344455555567888889999999999996544444432 123455545555556999999999997665
Q ss_pred c
Q 006669 587 K 587 (636)
Q Consensus 587 ~ 587 (636)
.
T Consensus 444 e 444 (569)
T KOG1242|consen 444 E 444 (569)
T ss_pred H
Confidence 4
No 119
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.091 Score=54.07 Aligned_cols=279 Identities=13% Similarity=0.131 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH--HHhhcCCChHHHHHHHHHHHHhhh-Ccc
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVL--VNLLTTDDVMTQEHAVTAILNLSI-YEN 426 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~L--v~lL~s~d~~~~e~Av~aL~nLs~-~~~ 426 (636)
+.+..+.++..+-..+.++-..|.+.|..++. -+..-..|.+......+ .++--.-+.-.+......+..++. .+.
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 55667788888888899999999999999987 35555566655443332 332222233455666677777665 666
Q ss_pred hHHHHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC--CHHHHHHHHH----H
Q 006669 427 NKGLIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG--STRGRKDAAT----A 499 (636)
Q Consensus 427 ~k~~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~--~~~~k~~A~~----a 499 (636)
.....-.+|.+..|..-|+. .+.-++.++......|...+..+..+.+.|.|..+..++... +|-.+-.++. .
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 66667778888888877765 366778899999999999999999999999999888887633 2333332332 2
Q ss_pred HHhhhhccchHHHHHHh--chHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCc--HHHHHHHHcCCC-HHH
Q 006669 500 LFNLCIYMGNKGRAVRA--GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKAST--IPVLIVLLRTGL-PRN 574 (636)
Q Consensus 500 L~nL~~~~~n~~~lv~~--g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~--i~~Lv~lL~~~s-~~~ 574 (636)
+.++...+-.-..++++ -+|....+++...++.+.+.|+.+|..+-++.+|...+...|. ...++.-....+ ..-
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence 33333333222333332 2455566777778899999999999999999999999988774 455554444433 333
Q ss_pred HHHHHHHHHHhhccC---hH---------HHHH-H----HHc---CChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 575 KENAAAILLSLCKRD---TE---------NLAC-I----SRL---GAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 575 ke~A~~~L~~L~~~~---~~---------~~~~-i----~~~---G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
++.+..+|.+++..- ++ .... + .+. .-......+++...+..+-.|...+.-+..
T Consensus 365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 556677777766421 11 1111 1 111 112333445566677777777766665543
No 120
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.047 Score=63.60 Aligned_cols=228 Identities=15% Similarity=0.105 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHhcc---ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHH-hhhCcchHHHHHHhCChHHHHHHH
Q 006669 369 RRAAVAEIRSLSKR---STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILN-LSIYENNKGLIMLAGAIPSIVQIL 444 (636)
Q Consensus 369 ~~~Al~~L~~La~~---~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~n-Ls~~~~~k~~I~~~G~I~~Lv~lL 444 (636)
|.+-+++|..|++- .+=.-..-..-|..|.++++|++...+++.--+-+=.. |+.++..+..+++.++-.-++.+|
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 33444555555532 22222233345899999999998877776554444333 455777788888888878888888
Q ss_pred hc-C--cHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhcc-chHHHHHHhch
Q 006669 445 RA-G--SMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYM-GNKGRAVRAGI 518 (636)
Q Consensus 445 ~~-~--~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~ 518 (636)
.. + ++|-+..|+-+|..+..+-. ......+.+.+...++.|.++ .+-.+...+-+|..|-.+. ++|-.=++.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 76 3 46888888888888866532 344445557888888888886 4778899999999987654 56767778999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----hhhHHH-----------HHhcCcHH----HHHHHHcCCCHHHHHHH
Q 006669 519 ISALLKMLTDSRNCMVDEALTILSVLASN-----PEAKIA-----------IVKASTIP----VLIVLLRTGLPRNKENA 578 (636)
Q Consensus 519 v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-----~~~~~~-----------i~~~g~i~----~Lv~lL~~~s~~~ke~A 578 (636)
...|+.+|++.-++++..|+.+|..+.++ ++.... +.-+..++ .++.++..+++-.+...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999988774 222211 11123333 67777788899888888
Q ss_pred HHHHHHhhccChHHHHHH
Q 006669 579 AAILLSLCKRDTENLACI 596 (636)
Q Consensus 579 ~~~L~~L~~~~~~~~~~i 596 (636)
+-.|.....+...+...+
T Consensus 724 ~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 724 VVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HHHHHHHHHhhHHHhHHH
Confidence 888888777655444443
No 121
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.81 E-value=0.055 Score=55.47 Aligned_cols=228 Identities=18% Similarity=0.162 Sum_probs=158.9
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhCcchHHHHH-HhCChHHHHHHHhc--CcHHHHHHHHHHHHHccCCCchhHHHHhc-C
Q 006669 401 NLLTTDDVMTQEHAVTAILNLSIYENNKGLIM-LAGAIPSIVQILRA--GSMEARENAAATLFSLSLLDENKIIIGAS-G 476 (636)
Q Consensus 401 ~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~-~~G~I~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g 476 (636)
++++.=++-++.-|+.+|-+|...++.|..+- +..+-..+++++++ |..+.+.++.-+++-|++.++....|-.. .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444455578889999999998777766554 45577788999886 46889999999999999998877555555 7
Q ss_pred chHHHHhhhccC-CHHHHHHHHHHHHhhhhcc--chHHHHHHhchHHHHHHHhcC---CCHHHHHHHH---HHH------
Q 006669 477 AIPALVDLLQNG-STRGRKDAATALFNLCIYM--GNKGRAVRAGIISALLKMLTD---SRNCMVDEAL---TIL------ 541 (636)
Q Consensus 477 ~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~--~n~~~lv~~g~v~~Lv~lL~~---~~~~~~~~Al---~~L------ 541 (636)
.+..|+.+++.. ...+-+-++..+.|++.-. +....+.-.|-+..-++.|.. .+++++...- ..|
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 888888888765 3456667778888887622 233344444544455555533 3444432211 111
Q ss_pred --------HHH-----hcCh---------hhHHHHHhc--CcHHHHHHHHcCCCHH-HHHHHHHHHHHhhccChHHHHHH
Q 006669 542 --------SVL-----ASNP---------EAKIAIVKA--STIPVLIVLLRTGLPR-NKENAAAILLSLCKRDTENLACI 596 (636)
Q Consensus 542 --------~~L-----a~~~---------~~~~~i~~~--g~i~~Lv~lL~~~s~~-~ke~A~~~L~~L~~~~~~~~~~i 596 (636)
..| +-+| .+...+.+. ..+..|.++++...+. .-.-|+.=+..+.+..|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 111 1111 233444443 3678999999887655 44567888888999999999999
Q ss_pred HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 597 SRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 597 ~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
...|+-..+..|+.+.++++|-.|.+++..+-
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999988664
No 122
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0011 Score=70.92 Aligned_cols=71 Identities=23% Similarity=0.422 Sum_probs=57.2
Q ss_pred CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc-----ccchhHHHHHHHHHhh
Q 006669 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL-----TPNYVLRSLISQWCTM 323 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l-----~pn~~lr~lI~~w~~~ 323 (636)
..++.+|.|-||...+.+||++||||+||+.||++-.+ ....||.|+..+..... .+|+....+|..++..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 35689999999999999999999999999999999665 46779999988875322 2356666778777654
No 123
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.16 Score=57.19 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=166.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchH
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDN-RIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNK 428 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k 428 (636)
++..+.++.+|++.-+.++.+|+-.+..+.-..++. | ..+|.|+.-|..+|+.++..|+.++..|+. +|.|.
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 446778899999999999999999888776544433 3 346899999999999999999999999998 77765
Q ss_pred HHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCH-HHHHHHHHHHH--hhh
Q 006669 429 GLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGST-RGRKDAATALF--NLC 504 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~-~~k~~A~~aL~--nL~ 504 (636)
-.+ -|.+.++|... +.=+...-...+.+|+.... .++ ...+++|.+++.+.+. .....+..++. |++
T Consensus 217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 433 36777777643 22233345667777776543 111 1367899999886532 22223332222 455
Q ss_pred hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669 505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583 (636)
Q Consensus 505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 583 (636)
...++....+.. +|+.|-.++.+.++.++..++-++..+.. ||...++-. ..++..|...++.+|-.|+..|.
T Consensus 288 ~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 288 SGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred cCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchhHHHHHHHHH
Confidence 544455554443 67778888888899999999999988877 665544432 35677888888999999999999
Q ss_pred HhhccChHHHHHHHHcCChHHHHHhhh--cCCHHHHHHHHHHHHHhh
Q 006669 584 SLCKRDTENLACISRLGAVIPLTELTK--SGTERAKRKATSLLEHLR 628 (636)
Q Consensus 584 ~L~~~~~~~~~~i~~~G~i~~L~~Ll~--~g~~~~k~kA~~lL~~l~ 628 (636)
.+... ++..+++ ..|+..+. +|+.---+-...++..++
T Consensus 362 gmVsk--kNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 362 GMVSK--KNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred HHhhh--hhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 88853 4444442 23332221 233333345555555544
No 124
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.034 Score=61.93 Aligned_cols=218 Identities=19% Similarity=0.182 Sum_probs=146.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Cc-----c
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YE-----N 426 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~-----~ 426 (636)
++.-|+......+..++..|+..|-.|.....-.+. .....+..++.++..++..|+.++.-++. ++ +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 344488888888999999999998888753322222 24567888888888899988877766554 21 1
Q ss_pred hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-------hhHH----------------------------
Q 006669 427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-------NKII---------------------------- 471 (636)
Q Consensus 427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-------~~~~---------------------------- 471 (636)
+-+.=....++..+.+.++..+..+|..|+..|+.+-...+ .|..
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 11111223467788888888888888888877776543322 1111
Q ss_pred ----------------HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHH
Q 006669 472 ----------------IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVD 535 (636)
Q Consensus 472 ----------------i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~ 535 (636)
|..+|+-.++|+=|.+.=.+++++|+..++.|+.+.+.-. ..++..|++|+.++...++.
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHH
Confidence 2222333445554544446899999999999987654321 22677899999999999999
Q ss_pred HHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 536 EALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 536 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
.|+.+|..++.+-.- ++.-++.+++.|...++.+|+..-.+|.+.
T Consensus 429 ~ai~aL~~Is~~l~i-----~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 429 KAIFALTMISVHLAI-----REEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHhee-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999887332 334466777778777888887766666543
No 125
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.67 E-value=0.0038 Score=44.05 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=36.3
Q ss_pred cchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccC
Q 006669 425 ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSL 464 (636)
Q Consensus 425 ~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 464 (636)
++++..+.+.|+++.|+.+|++++.+++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578888999999999999998899999999999999873
No 126
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.025 Score=62.92 Aligned_cols=173 Identities=21% Similarity=0.206 Sum_probs=128.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH--HHHHH---hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK--GLIML---AGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k--~~I~~---~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~ 468 (636)
..+|.|..+|.+++...++-|..+|-.++.+.... ..... .-.+|.++...++.++..|..|..++-.......
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence 46899999999999999999999999887643211 10001 1257888889999999999999998876654332
Q ss_pred hHHHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669 469 KIIIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 469 ~~~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 547 (636)
...+... .++..|..+-.+.+++++++.+.++..|.-....|-.=-=.++|..+++.-++.++++.-+|+.....+|..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 3333333 677888888888899999999999999875554332222257888888888899999999999999999999
Q ss_pred hhhHHHHHh--cCcHHHHHHHH
Q 006669 548 PEAKIAIVK--ASTIPVLIVLL 567 (636)
Q Consensus 548 ~~~~~~i~~--~g~i~~Lv~lL 567 (636)
+-.+..+.. ...||.|+.-+
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccC
Confidence 866666554 35677777544
No 127
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.62 E-value=0.053 Score=50.73 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=96.3
Q ss_pred HHHHhcCchHHHHhhhccCCH------HHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHH
Q 006669 470 IIIGASGAIPALVDLLQNGST------RGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMVDEALTIL 541 (636)
Q Consensus 470 ~~i~~~g~i~~Lv~LL~~~~~------~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L 541 (636)
......+|+..|+.++.+|+. .....++.++..|.-+.-.-...++...|..++..+.. .+..+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 345667899999999998863 56667888888887665445567777788888888865 3678899999999
Q ss_pred HHHhcChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669 542 SVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE 591 (636)
Q Consensus 542 ~~La~~~~~~~-~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 591 (636)
.++..+....- .+.++=.++.|+..|+.+++..+.+|.+.+-.|....++
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99998777644 444455699999999999999999999999887765543
No 128
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.13 Score=61.09 Aligned_cols=222 Identities=16% Similarity=0.173 Sum_probs=134.1
Q ss_pred cCCChHHHHHHHHHHHHhhhCcchHHHHHHh--CChHHHHHHHhcCcHHHHHHHHHHHHHccCC--CchhHHHHhcCchH
Q 006669 404 TTDDVMTQEHAVTAILNLSIYENNKGLIMLA--GAIPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIP 479 (636)
Q Consensus 404 ~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~--G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~ 479 (636)
++.+..+|..+..+|..|+..+......... .....|..-+++....++...+.+|..|-.. .++...+. ..|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 3457889999999999998764443333221 1223333444444555666666666655322 23333332 2455
Q ss_pred HHHhhhccCCHHHHHHHHHHHHhhhh----ccchHHHHHHhchHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCh-hh
Q 006669 480 ALVDLLQNGSTRGRKDAATALFNLCI----YMGNKGRAVRAGIISALLKMLT----DSRNCMVDEALTILSVLASNP-EA 550 (636)
Q Consensus 480 ~Lv~LL~~~~~~~k~~A~~aL~nL~~----~~~n~~~lv~~g~v~~Lv~lL~----~~~~~~~~~Al~~L~~La~~~-~~ 550 (636)
-++-.+++.+...++.|..+|.+++. ..+.... ...+|...+.++. .....++...+-++..+.... ..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 55555577888999999999998872 1111011 1114444444443 233333322233333333211 11
Q ss_pred HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 551 KIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 551 ~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
-....=.+.+..+..+|.+.++.+...|+..+..++..-|+.+..--..-+++.+..++++++...+.|+.-+|+.|.+
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1111112345566667778899999999999999998888776665555689999999999999999999999998865
No 129
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.32 E-value=0.019 Score=49.63 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHc--CCCHHHHHHHHHHHHHhhccChHHHHHHHH
Q 006669 533 MVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLR--TGLPRNKENAAAILLSLCKRDTENLACISR 598 (636)
Q Consensus 533 ~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~--~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~ 598 (636)
++...+.+|+|||. ++..+..+.+.|+||.++..-. ..+|-.+|.|+.++.+||.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35678899999997 6778999999999999988654 357999999999999999999998888754
No 130
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.30 E-value=0.3 Score=48.56 Aligned_cols=177 Identities=14% Similarity=0.172 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCch--hHHHHhcCchHHHH
Q 006669 410 TQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDEN--KIIIGASGAIPALV 482 (636)
Q Consensus 410 ~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv 482 (636)
-.-+|+..|--++.+++.+..+..+..---+-..|..+ ..-.|..+.+++..|...++. -..+...+.+|..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 34577777778888999999999876544455555432 356788999999999877652 34455669999999
Q ss_pred hhhccCCHHHHHHHHHHHHhhhhccchHHHHHH--------hchHHHH-HHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Q 006669 483 DLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR--------AGIISAL-LKMLTDSRNCMVDEALTILSVLASNPEAKIA 553 (636)
Q Consensus 483 ~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~--------~g~v~~L-v~lL~~~~~~~~~~Al~~L~~La~~~~~~~~ 553 (636)
..+..|+...|.-|...+..+..++.+-..+.+ .-.+..+ .++.+.++..+...++.+..+|+.+|..|.+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999888777655333322 1123333 3334458899999999999999999999988
Q ss_pred HHhc--CcH--HHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 554 IVKA--STI--PVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 554 i~~~--g~i--~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
+... +.+ ...-.+++ .++..|..-...+.++|.
T Consensus 255 L~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 255 LRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 7641 111 11222333 345566666666666664
No 131
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.23 E-value=0.0025 Score=65.27 Aligned_cols=65 Identities=12% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC----cccchhHHHHHHH
Q 006669 254 IPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT----LTPNYVLRSLISQ 319 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~----l~pn~~lr~lI~~ 319 (636)
+-....|++|..+|-|+-+ +.|=|||||+||-+++.. ..+||.|...+..+. +.+..+++.++.+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 3456789999999999986 689999999999999987 789999987665443 3444555555543
No 132
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.21 E-value=0.084 Score=49.40 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=97.4
Q ss_pred HHHHHhchHHHHHHHhcCCC------HHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHH
Q 006669 511 GRAVRAGIISALLKMLTDSR------NCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTG--LPRNKENAAAI 581 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~~~------~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~ 581 (636)
..++..|++..|++++.++. ..+...++.++..|-.+.- +. ...+..+|..++.++... ++.+.+.|.++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 46788899999999997744 4677888999999988755 34 455667899999999754 47889999999
Q ss_pred HHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 582 LLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
|-+++.+++.....+.++=-++.|...++.+++..+.+|..++.-|
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999998888788888877899999999999999999999998765
No 133
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.18 E-value=0.016 Score=43.98 Aligned_cols=55 Identities=25% Similarity=0.184 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 006669 490 TRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVL 544 (636)
Q Consensus 490 ~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L 544 (636)
++++..|+++|.+++...+....-....+++.|+.+|.++++.++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887766665556678999999999999999999999999875
No 134
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.12 E-value=0.027 Score=48.78 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhh-CcchHHHHHH
Q 006669 369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSI-YENNKGLIML 433 (636)
Q Consensus 369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~-~~~~k~~I~~ 433 (636)
+...++.|.+++..++.++..+.+.|++|.+++...- .+|.+++.|+.++.||+. +++|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4556788999999999999999999999999997754 568999999999999998 8899998875
No 135
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.031 Score=60.85 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch--
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-- 427 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~-- 427 (636)
+...++.|++.|+.+..-+.--+...+.++.-.-..-+..+.+.|.|..|++++.+.|...|.+.++.|..+..+.++
T Consensus 429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e 508 (743)
T COG5369 429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE 508 (743)
T ss_pred ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence 334566777777765444444566677777665566788899999999999999999999999999999999884433
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc----hhHHHHh---cC-chHHHHhhhccCCHHHHHHHHHH
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE----NKIIIGA---SG-AIPALVDLLQNGSTRGRKDAATA 499 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~---~g-~i~~Lv~LL~~~~~~~k~~A~~a 499 (636)
+-.....-++..+++..+.+...++.....+|.|+..+.. .+..... .. ..+.|++.+...+|-.....+-.
T Consensus 509 kf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yi 588 (743)
T COG5369 509 KFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYI 588 (743)
T ss_pred hhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence 4455667788999999999999999999999999976432 2222211 22 56677888877777666666888
Q ss_pred HHhhhhccchHHHHHH--hchHHHHHHH
Q 006669 500 LFNLCIYMGNKGRAVR--AGIISALLKM 525 (636)
Q Consensus 500 L~nL~~~~~n~~~lv~--~g~v~~Lv~l 525 (636)
|.+++.++++...++. ...+..+.+.
T Consensus 589 lv~~aa~d~~l~~~V~~q~~~L~~i~ei 616 (743)
T COG5369 589 LVRNAACDDTLDYIVQSQEDMLDSIFEI 616 (743)
T ss_pred HHHHHhccchHHHHHHhHHHHHHHHHHH
Confidence 8888888888666553 3444443333
No 136
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.03 E-value=0.015 Score=44.23 Aligned_cols=55 Identities=33% Similarity=0.192 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669 449 MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNL 503 (636)
Q Consensus 449 ~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL 503 (636)
+.+|..|+++|.+++........-.....++.|+.+|++.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5689999999999887666555555568999999999999999999999999875
No 137
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.99 E-value=0.009 Score=59.81 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=51.4
Q ss_pred ccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcc-cccCCcccchhHHHHHHHHHh
Q 006669 258 FLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQK-LEHLTLTPNYVLRSLISQWCT 322 (636)
Q Consensus 258 f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~-l~~~~l~pn~~lr~lI~~w~~ 322 (636)
+.||+|..++++|+-. .|||+||..||+.-+-...+.||.|... .--..++|.+.-+.-|+....
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 9999999999999977 7899999999998887778999999652 223456677655555666654
No 138
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.99 E-value=0.047 Score=53.10 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHhhhhccchHHHHHH----------------hchHHHHHHHhcC------CCHHHHHHHHHHHHHHhc
Q 006669 489 STRGRKDAATALFNLCIYMGNKGRAVR----------------AGIISALLKMLTD------SRNCMVDEALTILSVLAS 546 (636)
Q Consensus 489 ~~~~k~~A~~aL~nL~~~~~n~~~lv~----------------~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~ 546 (636)
.......++..|.||+...+....+++ ..++..|++.+.. ....-.+....+|+|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 334556677888888887777665544 2367788888754 234456788999999999
Q ss_pred ChhhHHHHHhc--Cc--HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH--cCChHHHHHhhh
Q 006669 547 NPEAKIAIVKA--ST--IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR--LGAVIPLTELTK 610 (636)
Q Consensus 547 ~~~~~~~i~~~--g~--i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~--~G~i~~L~~Ll~ 610 (636)
.+++|..+.+. +. +..|+-++.+.+.--|.-++.+|.|+|.....+...+-. .++++.|+.-+.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999874 34 778888887778777889999999999976555443332 355666655543
No 139
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=0.096 Score=61.18 Aligned_cols=191 Identities=17% Similarity=0.089 Sum_probs=139.1
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH-HhcCchHHHHhhhccCCHHHHHHHHHHHHh-hhhccchHHHHH
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLLDENKIII-GASGAIPALVDLLQNGSTRGRKDAATALFN-LCIYMGNKGRAV 514 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~n-L~~~~~n~~~lv 514 (636)
+|.++.+|-+.- -|..|+..|...-....=..-+ ..-|.+|-+++||++...+.|..-+..=.. |+.++..+..++
T Consensus 474 LPiVLQVLLSQv--HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv 551 (1387)
T KOG1517|consen 474 LPIVLQVLLSQV--HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV 551 (1387)
T ss_pred cchHHHHHHHHH--HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence 344455543332 2333555554432222222222 233999999999999877766654443333 566666678899
Q ss_pred HhchHHHHHHHhcC---CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccC
Q 006669 515 RAGIISALLKMLTD---SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 515 ~~g~v~~Lv~lL~~---~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~ 589 (636)
+.++-...++.|.+ -+++-+..|+.+|+.++. .+-++.+..+.+.+..-++.|.++ .+-.++.++-.|..|-.+.
T Consensus 552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~ 631 (1387)
T KOG1517|consen 552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY 631 (1387)
T ss_pred hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc
Confidence 88777777777754 245677789999999988 467888999989999888999875 5888999999999888877
Q ss_pred hHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 590 ~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
...+-.=.+.++.++|+.++.+.-+++|-.|..+|..+-+
T Consensus 632 ~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 632 DEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred chhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 7777666788999999999999999999999999987755
No 140
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.86 Score=52.01 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=142.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc------------
Q 006669 358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE------------ 425 (636)
Q Consensus 358 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~------------ 425 (636)
.+...+++.+++..|..+|..+..-..+.-..-.+......-+.-+++++.++.-.++..=.+++..+
T Consensus 223 cEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 223 CEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred eecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445678888999999988877544333333333334445555667788777666665555444211
Q ss_pred ----chHHHHHH---hCChHHHHHHHhcC-------cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHH
Q 006669 426 ----NNKGLIML---AGAIPSIVQILRAG-------SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTR 491 (636)
Q Consensus 426 ----~~k~~I~~---~G~I~~Lv~lL~~~-------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~ 491 (636)
.....+++ .+.+|.|+++|... ++.....|..+|.-++..-+ ..|+. ..+|.+-+-+++.+.+
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~--D~Iv~-~Vl~Fiee~i~~pdwr 379 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG--DDIVP-HVLPFIEENIQNPDWR 379 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc--ccchh-hhHHHHHHhcCCcchh
Confidence 00111221 36778888887541 35566666666665543321 12222 3444444567788899
Q ss_pred HHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHH-HHHhcCcHHHHHHHHc
Q 006669 492 GRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKI-AIVKASTIPVLIVLLR 568 (636)
Q Consensus 492 ~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~-~i~~~g~i~~Lv~lL~ 568 (636)
-+..|+.+.......+ +.+..-+-.+++|.++.++.+++--+++.+.+.|..++.. ++... ...-...++.++.=|.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 9999999999877655 3455555678999999999988888889999999999984 32211 1122233444444443
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 006669 569 TGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 569 ~~s~~~ke~A~~~L~~L~~ 587 (636)
..|+.-.+++|++.+|+.
T Consensus 460 -DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 460 -DEPRVASNVCWAFISLAE 477 (859)
T ss_pred -hCchHHHHHHHHHHHHHH
Confidence 568999999999999984
No 141
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.46 Score=54.08 Aligned_cols=264 Identities=14% Similarity=0.140 Sum_probs=163.3
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcC--CChHHHHHHHHHHHHhhh-----
Q 006669 353 AIEALVRKLSSRSV-EERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTT--DDVMTQEHAVTAILNLSI----- 423 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~----- 423 (636)
.+..|+........ ..+..++..|..++.+ .+........ ..+..++.-... ++..++-.|..+|.|-..
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n 208 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN 208 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 34444444444333 4778889999999864 2333333333 345556655543 457789999999987543
Q ss_pred --CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-ch-hHHHHhcCchHHHHhhhccCCHHHHHHHHHH
Q 006669 424 --YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-EN-KIIIGASGAIPALVDLLQNGSTRGRKDAATA 499 (636)
Q Consensus 424 --~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~-~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~a 499 (636)
++.++..|+ ..+++.-.+++.+++..|..+|..+.... ++ ...|.+ ..+..-+.-+++.++++...+..-
T Consensus 209 F~~E~ern~iM-----qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 209 FNNEMERNYIM-----QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred hccHhhhceee-----eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 223333333 33444455668889999999988875432 22 222322 344444556677788887777765
Q ss_pred HHhhhhcc----------------c-hHHHH--HHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHH
Q 006669 500 LFNLCIYM----------------G-NKGRA--VRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIA 553 (636)
Q Consensus 500 L~nL~~~~----------------~-n~~~l--v~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~ 553 (636)
=.++|-.. + ++... .-.+++|.|+++|.. ++......|-.+|..++.+.
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~----- 357 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV----- 357 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-----
Confidence 55554321 0 11111 113688999999853 12234445555555554421
Q ss_pred HHhcCcHHHHHHH----HcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 554 IVKASTIPVLIVL----LRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 554 i~~~g~i~~Lv~l----L~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
....++.++.+ +++.+.+.++.|+.++..+-.+....+..-+..++++.++.++.+.+-.+++-+.|.+-.+.+
T Consensus 358 --~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 358 --GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred --cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 22344555544 456778889999999988887655556666677899999999998888999999999988876
Q ss_pred c
Q 006669 630 L 630 (636)
Q Consensus 630 ~ 630 (636)
+
T Consensus 436 ~ 436 (859)
T KOG1241|consen 436 F 436 (859)
T ss_pred h
Confidence 4
No 142
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0047 Score=64.58 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=40.5
Q ss_pred ccCccchhhccC---CeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 258 FLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 258 f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
+.|-||+|-+.+ =+++||+|.|=..||-.|+.....+||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 699999999965 34699999999999999999877789999986543
No 143
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.79 E-value=0.86 Score=46.10 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhh-------cCCC--h---HHHHHHHHHHHHhhhCcchHHHH
Q 006669 365 SVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLL-------TTDD--V---MTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL-------~s~d--~---~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
+++.++.|+.+|..--...++-.-.+-.. |.+..|+.=. +.+. + .-.-+|++.|--++.+++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778888888776554444444444443 6666665422 2121 1 22346666677788899999999
Q ss_pred HHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCc--hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669 432 MLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~ 504 (636)
.++...--|...|+.. ....|..+.++++.|...++ .-..+...+.+|..+..+..|+.-.|.-|...+..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9988776677777543 24578899999999976544 3445566799999999999999999999999998887
Q ss_pred hccchHHHH-------HH-hchHHHHHH-HhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh
Q 006669 505 IYMGNKGRA-------VR-AGIISALLK-MLTDSRNCMVDEALTILSVLASNPEAKIAIVK 556 (636)
Q Consensus 505 ~~~~n~~~l-------v~-~g~v~~Lv~-lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~ 556 (636)
.++.+-..+ .. ..++..++. +..++++.+....+.+-..|+.++.++.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666543333 22 223444443 34568999999999999999999999988764
No 144
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.73 E-value=0.35 Score=55.95 Aligned_cols=168 Identities=22% Similarity=0.207 Sum_probs=108.1
Q ss_pred hcCCCHHHHHHHHHHH-HHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHH
Q 006669 361 LSSRSVEERRAAVAEI-RSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPS 439 (636)
Q Consensus 361 L~s~~~~~~~~Al~~L-~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~ 439 (636)
+.+++...+..|.+.+ ..++.+++ -- -..+.+++...+.|.+++.-.---|.+.++.......+ +++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 5556666777777643 33443322 11 12355666555677777766666666666633322222 3556
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchH
Q 006669 440 IVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGII 519 (636)
Q Consensus 440 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v 519 (636)
+.+=+.+.++..|-.|.+++..+=.. . .-..+++++.+++.++++.+++.|+-|++++-.. ++....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~----e--l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVK----E--LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChH----H--HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence 66667777888888888887766221 1 1124677888888888888888888888887532 33445567788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669 520 SALLKMLTDSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 520 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 547 (636)
..+..++.+.++.++.+|+.+|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8888888888888888888888877653
No 145
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0046 Score=70.11 Aligned_cols=46 Identities=30% Similarity=0.658 Sum_probs=41.3
Q ss_pred CcccCccchhhccC-----CeecCCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669 256 ADFLCPISLELMRD-----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL 302 (636)
Q Consensus 256 ~~f~CPis~~~m~d-----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l 302 (636)
.+-.|+||.|.|.. |-.++|||.|...|+.+|++. ..+||.|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 36789999999988 789999999999999999986 78999998743
No 146
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.72 E-value=0.44 Score=55.41 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHH-HHHHHHHHHhhhCcch
Q 006669 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQ-EHAVTAILNLSIYENN 427 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~-e~Av~aL~nLs~~~~~ 427 (636)
.+...+..+++.|...+.++|..|++++.-|++.-.+.+-.- .+..|..-+-++....+ ..++......+.-+..
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 345679999999999999999999999999885443333211 12333332222222222 2333333333322222
Q ss_pred HHHHHHhCChHHHHHHHhcC------cHHHHHHHHHHHHHccC-CCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHH
Q 006669 428 KGLIMLAGAIPSIVQILRAG------SMEARENAAATLFSLSL-LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL 500 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL 500 (636)
......+.+.+.+...|..+ ...++..++..+...-. ....-.. ...+....++.-+.+....+++.|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 22222334445555554432 22245555555443311 1110000 1124445555555555667899999999
Q ss_pred HhhhhccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH---cCCCHHHHH
Q 006669 501 FNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL---RTGLPRNKE 576 (636)
Q Consensus 501 ~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL---~~~s~~~ke 576 (636)
..|+...++ ... .+++..|++-|.. ........-+.+|..+|.....|.----...+|.+.++. ....++.+|
T Consensus 199 ~~la~~~~~-~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 199 GHLASSCNR-DLY--VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHHHHhcCH-HHH--HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence 999875432 111 2355666666644 445555566777777776544443222235688888888 556789999
Q ss_pred HHHHHHHHhhccChHH
Q 006669 577 NAAAILLSLCKRDTEN 592 (636)
Q Consensus 577 ~A~~~L~~L~~~~~~~ 592 (636)
.+..++-.+....|..
T Consensus 276 ~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHHHhChhh
Confidence 9999998877666643
No 147
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.67 E-value=0.48 Score=50.29 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=144.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHH-----HHHhc--CCHHHHHHhhcCCChHHHHHHHHHHHHhhhC
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-----IIADA--GAIPVLVNLLTTDDVMTQEHAVTAILNLSIY 424 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-----~i~e~--g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~ 424 (636)
+.+..|+..|..-+.+.+..+......+-+....++. .+... ..+..|+.-- +++++--.+-..|+....+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence 3566788888888899999998888888776555543 33322 1222233222 4666778888899999999
Q ss_pred cchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hh-HHHHhc--CchHHHHhhhccCCHHHHHHHHHHH
Q 006669 425 ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NK-IIIGAS--GAIPALVDLLQNGSTRGRKDAATAL 500 (636)
Q Consensus 425 ~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~-~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL 500 (636)
+.....|.....+..+......++-++...|..++..|-..+. -. ..+... ..+...-.||.+++.-++..++..|
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 8888888888888899999999999999999999998654433 22 233332 5667788899999999999999999
Q ss_pred HhhhhccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Q 006669 501 FNLCIYMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPEA 550 (636)
Q Consensus 501 ~nL~~~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~ 550 (636)
..|..+..|...+.. ..-+..++.+|++.+..++-+|..+......+|..
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 999999988665543 56788899999999999999999999988887653
No 148
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=1.5 Score=50.48 Aligned_cols=248 Identities=16% Similarity=0.120 Sum_probs=142.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGL 430 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~ 430 (636)
+..+...++++.+++.++.+|+-+...+-+..|+.-..+ ++..-++|...+..+.-.++..+..++. ++++-..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence 356677788889999999999888877776666544433 4555666666666666667777777665 3333333
Q ss_pred HHHhCChHHHHHHHhc---------------CcHHHHHHHHHHHHHccCCCchh-HHH-----------------HhcCc
Q 006669 431 IMLAGAIPSIVQILRA---------------GSMEARENAAATLFSLSLLDENK-III-----------------GASGA 477 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~~-~~i-----------------~~~g~ 477 (636)
+-+ .++.+|..|+. .+|-.+...+++|.-|-.++... ..| +.+=.
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence 322 45555555531 14556666666666665444321 111 11111
Q ss_pred hHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchHHHH---------HH--hchHH----HHHHHhcCCCHHHHHHHHHHH
Q 006669 478 IPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNKGRA---------VR--AGIIS----ALLKMLTDSRNCMVDEALTIL 541 (636)
Q Consensus 478 i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~~~l---------v~--~g~v~----~Lv~lL~~~~~~~~~~Al~~L 541 (636)
.+.+...+. ..+...+..|+.+|.....+++|--+- +. ..+|+ .+++.|.+++..++..|+..+
T Consensus 295 YE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 295 YECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 111111211 124456667777777665555432211 11 22332 367778888888888898888
Q ss_pred HHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc-ChHHHH------HH-------HHcCChHHHHH
Q 006669 542 SVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR-DTENLA------CI-------SRLGAVIPLTE 607 (636)
Q Consensus 542 ~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~-~~~~~~------~i-------~~~G~i~~L~~ 607 (636)
..|.... +...| +..|+.+|...++..|...+.-+..++.. .|+.+. .+ +...++..++.
T Consensus 375 ~~lvn~~-Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~ 448 (866)
T KOG1062|consen 375 YALVNES-NVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLR 448 (866)
T ss_pred HHHhccc-cHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHH
Confidence 8777643 33333 56788888877888888877777766642 232221 11 22345677777
Q ss_pred hhhcC
Q 006669 608 LTKSG 612 (636)
Q Consensus 608 Ll~~g 612 (636)
++.++
T Consensus 449 LIa~~ 453 (866)
T KOG1062|consen 449 LIANA 453 (866)
T ss_pred HHhcC
Confidence 77666
No 149
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.58 E-value=0.0088 Score=61.28 Aligned_cols=54 Identities=15% Similarity=0.381 Sum_probs=43.7
Q ss_pred CCCcccCccchhhccC---Ce-ecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669 254 IPADFLCPISLELMRD---PV-IVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP 309 (636)
Q Consensus 254 ~p~~f~CPis~~~m~d---Pv-~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 309 (636)
-...|.||||+..|.. -| +.+|||.|...+|.+-- ....||+|+.++...++++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3567999999999954 23 46999999999998873 3567999999999887754
No 150
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.56 E-value=0.44 Score=54.01 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhhcCCChHHHHH---HHHHHHHhhhCcch
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRST--DNRIIIADAGAIPVLVNLLTTDDVMTQEH---AVTAILNLSIYENN 427 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~--~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~---Av~aL~nLs~~~~~ 427 (636)
.+..++..|++.++.++.+|+..+..+++--. ..-..+...|. .|...|..+++++.-. |+.++.|.-.- .
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm--~ 875 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGM--T 875 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccc--c
Confidence 34566778899999999999999988875211 01122333443 3667777777777654 44444443210 0
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALFNLCIY 506 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~ 506 (636)
+..=--.+.+|.|..+|++....+++++...+..++.......-..+ ...--.|+++|+..+...+.+|...+..++.-
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 10000247899999999999999999999999998765322111000 02233578888888888888888888777531
Q ss_pred cchHHHHHHhchHHHHHHHhcC
Q 006669 507 MGNKGRAVRAGIISALLKMLTD 528 (636)
Q Consensus 507 ~~n~~~lv~~g~v~~Lv~lL~~ 528 (636)
+--..++..|++-|+.
T Consensus 956 ------IGPqdVLatLlnnLkv 971 (1172)
T KOG0213|consen 956 ------IGPQDVLATLLNNLKV 971 (1172)
T ss_pred ------cCHHHHHHHHHhcchH
Confidence 1114456666666643
No 151
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.2 Score=58.56 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhhhhccchHHHHH-----HhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHH
Q 006669 492 GRKDAATALFNLCIYMGNKGRAV-----RAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIV 565 (636)
Q Consensus 492 ~k~~A~~aL~nL~~~~~n~~~lv-----~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~ 565 (636)
-...+++||.|+....+.-..+. --|-.+.+...+.. .++.+...|+.++..+..+.++...+...|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45678999999877665322221 13667777777765 6778999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHhh
Q 006669 566 LLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELT-KSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 566 lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll-~~g~~~~k~kA~~lL~~l~ 628 (636)
+|++. |..++.+..+|..|++ +++...+....|++.-+..++ .+.++..|..|++++..|.
T Consensus 1821 lLHS~-PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHhcC-hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 99764 7789999999999997 556677777777777666554 5567888889999988764
No 152
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.43 E-value=0.0078 Score=64.70 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=43.3
Q ss_pred CcccCccchhhccCCeecCCCchhhhHHHHHHHc----CCCCCCCCCCcccccC
Q 006669 256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWID----CGNVTCPKTQQKLEHL 305 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~----~~~~~cP~~~~~l~~~ 305 (636)
.+..|-+|.+.-.||+...|.|+|||.||.+|.. .++-+||+|...|+-.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 4578999999999999999999999999988864 3467899998887654
No 153
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.42 E-value=0.77 Score=51.14 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh---Ccc
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRST--DNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI---YEN 426 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~--~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~---~~~ 426 (636)
..+..++..|++..++++.+|+.....|++--. ..-+.+...|. .|..-|...++++.-..+.++..+.. ...
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 357778899999999999999988887765211 00122333342 25556666677766544444443322 111
Q ss_pred hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669 427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALFNLC 504 (636)
Q Consensus 427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~ 504 (636)
.+.- -.|.+|.|..+|++....+..+..+.+..++.......-..+ ...--.|+++|++-+.+.+.+|...+..++
T Consensus 682 mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 1111 258899999999999999999999998888765432111000 022335778888878888888776666554
No 154
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0078 Score=60.79 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=42.5
Q ss_pred cCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccC
Q 006669 259 LCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL 305 (636)
Q Consensus 259 ~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 305 (636)
-||||.+-|--||.++|+|.||..||.--...+..+||+|++++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999887766778899999998764
No 155
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.08 E-value=1.3 Score=44.23 Aligned_cols=145 Identities=17% Similarity=0.114 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CChHHHHHHHHHHHHhhhCc--chHHHHHHhCChHHHH
Q 006669 369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----DDVMTQEHAVTAILNLSIYE--NNKGLIMLAGAIPSIV 441 (636)
Q Consensus 369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----~d~~~~e~Av~aL~nLs~~~--~~k~~I~~~G~I~~Lv 441 (636)
...|+..+.-++. .++.|..+..+-.--.|-.+|.. .....+-.++.++..|.+.+ +.-..+...+.||..+
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3456666666775 57888888887655555566643 33567888999999999843 3355667789999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-C-------chHHH-HhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669 442 QILRAGSMEARENAAATLFSLSLLDENKIIIGAS-G-------AIPAL-VDLLQNGSTRGRKDAATALFNLCIYMGNKGR 512 (636)
Q Consensus 442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g-------~i~~L-v~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~ 512 (636)
+.+..|+...+.-|+.++..+-.+|..-..|.+. . .+..+ ..+.+.++++..+.++++..+|+-++..|..
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999988887655444432 1 22222 2344567899999999999999877755554
Q ss_pred HH
Q 006669 513 AV 514 (636)
Q Consensus 513 lv 514 (636)
+-
T Consensus 255 L~ 256 (293)
T KOG3036|consen 255 LR 256 (293)
T ss_pred HH
Confidence 43
No 156
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.32 Score=55.44 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY 424 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~ 424 (636)
....|.+.++..++.++..|+-...++-.. +.....+.|.++.|-.++...++.+..+|+.+|.++...
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 467788889999999999999888888653 345667789999999999988999999999999998773
No 157
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.016 Score=58.53 Aligned_cols=47 Identities=13% Similarity=0.411 Sum_probs=38.9
Q ss_pred ccCccchhhc--cCC-eecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 258 FLCPISLELM--RDP-VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 258 f~CPis~~~m--~dP-v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.-|-||+.=+ -|- +++||.|.|-+.||.+|...-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 6799998876 344 4589999999999999998666789999987764
No 158
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.05 E-value=2.1 Score=47.53 Aligned_cols=257 Identities=17% Similarity=0.155 Sum_probs=124.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccc-----h-
Q 006669 355 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YEN-----N- 427 (636)
Q Consensus 355 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~-----~- 427 (636)
|+|-..|++.-.-++.++++.+..++..+... ... ...|..|-.+|++.....+-.|+.+|-.|+. .|+ |
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~--~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ 343 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGS--QFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNK 343 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecCh
Confidence 34444455555667888999988888654111 111 1356778888888899999999999999986 332 1
Q ss_pred --HHHHHHhC---ChHHHHHHHhcCcHHHHHHHHHHHHHccCC--CchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHH
Q 006669 428 --KGLIMLAG---AIPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL 500 (636)
Q Consensus 428 --k~~I~~~G---~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL 500 (636)
-..|-+.+ .--.+..+|+.|+.+....-...+-+...+ +..|..+. .++..|-.+. |+-+...+.-|
T Consensus 344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i--da~rsLsl~F----p~k~~s~l~FL 417 (898)
T COG5240 344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI--DALRSLSLLF----PSKKLSYLDFL 417 (898)
T ss_pred hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH--HHHHHHHhhC----cHHHHHHHHHH
Confidence 12222211 223455667777665555444444443221 12222111 1111111111 12222233333
Q ss_pred Hhhhhccch---HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH-------HHhcC--------cHHH
Q 006669 501 FNLCIYMGN---KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIA-------IVKAS--------TIPV 562 (636)
Q Consensus 501 ~nL~~~~~n---~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~-------i~~~g--------~i~~ 562 (636)
.+.....++ +.. +|.++.+++. ..++.++.|+..|...-...+.-+. ++++| .|..
T Consensus 418 ~~~L~~eGg~eFK~~-----~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrh 491 (898)
T COG5240 418 GSSLLQEGGLEFKKY-----MVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRH 491 (898)
T ss_pred HHHHHhcccchHHHH-----HHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHH
Confidence 332211111 111 2333444442 2345555555555444332221111 11111 1222
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 563 LIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 563 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
+..-+--.+.-+|..|+.+|...+-+-.+ .+....+...|...+.+.++.+|..|+.+|++|+.
T Consensus 492 IyNR~iLEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 492 IYNRLILENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 22111113344566666666444332111 11122334556677788899999999999999974
No 159
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.96 E-value=0.12 Score=57.21 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=98.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH---HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH-H
Q 006669 396 IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK---GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI-I 471 (636)
Q Consensus 396 i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k---~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~-~ 471 (636)
|..++..|++..+.++.+|+.....|++--.++ +.+...|. .|.+-|....+|+.-.-..++..+.+....+. +
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 455667788888999999998888777522221 22222332 23445555577777666666666654433221 1
Q ss_pred HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
-=-.|.+|.|..+|++.+..+..+....+..+|.+.+...-.-+ ..+---|+++|.+.+.+++..|...+.-++.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11248899999999999999999999988888876654322222 2345568888988888998888776666654
No 160
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.95 E-value=2.9 Score=49.38 Aligned_cols=241 Identities=17% Similarity=0.131 Sum_probs=145.3
Q ss_pred HHHhcCCHHHHHHhhcC-----CChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHh----cCc----HHHHHHH
Q 006669 389 IIADAGAIPVLVNLLTT-----DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILR----AGS----MEARENA 455 (636)
Q Consensus 389 ~i~e~g~i~~Lv~lL~s-----~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~----~~~----~e~~~~A 455 (636)
.+.+.|++..|+.++.+ .+.......+.+|...++...|+..+.+.|+++.|++.|+ .++ ++..+.-
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 45567999999999975 2233444555666666678899999999999999999885 223 5666666
Q ss_pred HHHHHHccCCCc---hhHHHH----------hcCchHHHHhhhccC----CHHHHHHHHHHHHhhhhccchHHHHHHhch
Q 006669 456 AATLFSLSLLDE---NKIIIG----------ASGAIPALVDLLQNG----STRGRKDAATALFNLCIYMGNKGRAVRAGI 518 (636)
Q Consensus 456 a~~L~~Ls~~~~---~~~~i~----------~~g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~ 518 (636)
..++..|..... ...... ....+..|++.+.+. ++......++.|-+|+..++.+...+-.-.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 666665532211 111111 112356666666543 578888889999999987766544322111
Q ss_pred HHHHHHH--hcCCCHHHHHHHHHHHHHHhc----Ch---hhHHHHHhcCcHHHHHHHHcC--------CCHHHHH-----
Q 006669 519 ISALLKM--LTDSRNCMVDEALTILSVLAS----NP---EAKIAIVKASTIPVLIVLLRT--------GLPRNKE----- 576 (636)
Q Consensus 519 v~~Lv~l--L~~~~~~~~~~Al~~L~~La~----~~---~~~~~i~~~g~i~~Lv~lL~~--------~s~~~ke----- 576 (636)
.+.+++ +......--..-+..+..++. +. .-+..|++.|++...+++|.. .++.+++
T Consensus 272 -~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 -KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred -HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 222222 110000000122444444443 22 236788999999999988863 2455554
Q ss_pred ---HHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhccc
Q 006669 577 ---NAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 577 ---~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~~ 631 (636)
.++.+|.-||.+....... +..++++.+..|=+. ++..+-..|--+|..++...
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 4678888888866544433 556677777766554 35566667777777776543
No 161
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.02 Score=56.05 Aligned_cols=54 Identities=15% Similarity=0.442 Sum_probs=47.5
Q ss_pred CcccCccchhhccC----CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669 256 ADFLCPISLELMRD----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN 310 (636)
Q Consensus 256 ~~f~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 310 (636)
..|.||+|.+.+++ -|+-||||.++..|.++.+. +...||+|+.++.+.++++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 67999999999988 35689999999999999886 57899999999999888764
No 162
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.82 E-value=0.34 Score=55.51 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=137.9
Q ss_pred CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHH-HccCCCchhHHHHhcCchHHHHhhhccCC-HHHHHHHHHHHH
Q 006669 424 YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENKIIIGASGAIPALVDLLQNGS-TRGRKDAATALF 501 (636)
Q Consensus 424 ~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~-~~~k~~A~~aL~ 501 (636)
+...+...++.|+...|+++...++++++..+..+|. .++...+- ....++++...+.+.. --....++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4444566778899999999999999999988888887 33332210 1145566666555432 234567889999
Q ss_pred hhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH-HHHh-cCcHHHHHHHHcCCCHHHHHHH
Q 006669 502 NLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVK-ASTIPVLIVLLRTGLPRNKENA 578 (636)
Q Consensus 502 nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~-~i~~-~g~i~~Lv~lL~~~s~~~ke~A 578 (636)
||+... ..|.++++.-.++.+-.++.+.++..+..++..+.||..++..-+ .+++ ...++.....+.....+....+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 998765 458888888788887788888999999999999999999887544 3455 4567777777766556666667
Q ss_pred HHHHHHhhccChHHHHH-HHHcCChHHHHHhhhcCCHHHHHHHHH
Q 006669 579 AAILLSLCKRDTENLAC-ISRLGAVIPLTELTKSGTERAKRKATS 622 (636)
Q Consensus 579 ~~~L~~L~~~~~~~~~~-i~~~G~i~~L~~Ll~~g~~~~k~kA~~ 622 (636)
++++..+......+|.. ..-..+...+..++.++.+.++..-..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 77777676666666663 333567888888888888888755443
No 163
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.014 Score=57.17 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=30.8
Q ss_pred CcccCccchhhccCCeecCCCchhhhHHHHHHHc
Q 006669 256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWID 289 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~ 289 (636)
+--+|.+|++..+|||+.+.|+.|||.+|-+++-
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3348999999999999999999999999999875
No 164
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.76 E-value=2 Score=44.47 Aligned_cols=221 Identities=15% Similarity=0.071 Sum_probs=142.3
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHH-HhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhhCcchHHHHHH-hCChHHH
Q 006669 365 SVEERRAAVAEIRSLSKRSTDNRIII-ADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSIYENNKGLIML-AGAIPSI 440 (636)
Q Consensus 365 ~~~~~~~Al~~L~~La~~~~~~r~~i-~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~~~~k~~I~~-~G~I~~L 440 (636)
++-.+.-|++++.++.. .++.|..+ ++.-.-..++..++. ++..+|.+.+-+++-|+.++.....|-+ -..|..+
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34456678888888875 45666554 344344567777765 5678999999999999887666544443 3567788
Q ss_pred HHHHhcCc-HHHHHHHHHHHHHccCCC--chhHHHHhcCchHHHHhhhccC---CHHHHHHH---------------HH-
Q 006669 441 VQILRAGS-MEARENAAATLFSLSLLD--ENKIIIGASGAIPALVDLLQNG---STRGRKDA---------------AT- 498 (636)
Q Consensus 441 v~lL~~~~-~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~LL~~~---~~~~k~~A---------------~~- 498 (636)
+.+.+... ..+-.-+++++.|+.... ..-..+...|-+.+-|++|..+ +.+.+.+. ..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 88887764 556677888888886522 2233334445556666666543 22221111 10
Q ss_pred -HHHhh-----hhc---------cchHHHHHH--hchHHHHHHHhcCCCHH-HHHHHHHHHHHHh-cChhhHHHHHhcCc
Q 006669 499 -ALFNL-----CIY---------MGNKGRAVR--AGIISALLKMLTDSRNC-MVDEALTILSVLA-SNPEAKIAIVKAST 559 (636)
Q Consensus 499 -aL~nL-----~~~---------~~n~~~lv~--~g~v~~Lv~lL~~~~~~-~~~~Al~~L~~La-~~~~~~~~i~~~g~ 559 (636)
-+..| +-. +.|-..+.+ ..++..|.++++..++. ....|+.=+..+. ..|+++..+...|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 01111 111 124445554 34888899999775444 3344555555544 47999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 560 IPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 560 i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
=..+.+++.++++++|=.|..++..+.
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999998886544
No 165
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.72 E-value=1.8 Score=45.56 Aligned_cols=185 Identities=21% Similarity=0.247 Sum_probs=102.7
Q ss_pred hhcCCChHHHHHHHHHHHHhhhCcchHHHHHH--hCChHHHHHHHhcCcHHHHHHHHHHHHHccCC---CchhHHHHhcC
Q 006669 402 LLTTDDVMTQEHAVTAILNLSIYENNKGLIML--AGAIPSIVQILRAGSMEARENAAATLFSLSLL---DENKIIIGASG 476 (636)
Q Consensus 402 lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~--~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~~~g 476 (636)
.+.......++.++..+.++....-....+.+ ...+..+.+.++.|..+-+.-|+.++.-++.. .+....+.+ .
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~ 129 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-E 129 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-H
Confidence 34444566677777777666543222233322 34567778888888766666676666665544 122333333 4
Q ss_pred chHHHHhhhccCC--HHHHHHHHHHHHhhhhccch-HHHHHH-hchHHHHHH--HhcC----------CCHHHHHHHHHH
Q 006669 477 AIPALVDLLQNGS--TRGRKDAATALFNLCIYMGN-KGRAVR-AGIISALLK--MLTD----------SRNCMVDEALTI 540 (636)
Q Consensus 477 ~i~~Lv~LL~~~~--~~~k~~A~~aL~nL~~~~~n-~~~lv~-~g~v~~Lv~--lL~~----------~~~~~~~~Al~~ 540 (636)
..|.|...+.+++ +..+..++.+|.-++....+ -..+.+ ...+..+.. .... +++.+...|+..
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 6778888888764 34445555566555432211 111110 112221111 1211 124577777776
Q ss_pred HHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 541 LSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 541 L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
-..|... +...-.-.-...+|.|+.+|.+.+..+|-.|..+|.-|..
T Consensus 210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6666653 3322221123569999999999999999988877776654
No 166
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.023 Score=58.04 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=42.9
Q ss_pred CCCCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 252 LIIPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
...|+.=.||+|++--.+|.++ .+|-.||-.||-++.. ++..||+|+.+..-
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 3456778999999988777665 4599999999999998 68899999887643
No 167
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.71 E-value=0.032 Score=55.42 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=38.5
Q ss_pred CCcccCccchhhccCCee-cCCCchhhhHHHHHHHcC-CCCCCCCCCcc
Q 006669 255 PADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDC-GNVTCPKTQQK 301 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~ 301 (636)
--+++||||......||+ ..|||.|+|..|+....- -...||+-+-.
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 457899999999999998 789999999999999853 23459976543
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.69 E-value=0.018 Score=61.17 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=39.4
Q ss_pred CCCCcccCccchhhccCCe----ecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 253 IIPADFLCPISLELMRDPV----IVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv----~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
+..+-.+||||++=|.+-| ++.|.|+|-=+|+++|++ .+||+||-...
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 4445679999999996544 689999999999999985 68999986555
No 169
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=2.5 Score=47.98 Aligned_cols=222 Identities=17% Similarity=0.138 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-C-cchHHHHHHh-CChHHHHHH
Q 006669 367 EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-Y-ENNKGLIMLA-GAIPSIVQI 443 (636)
Q Consensus 367 ~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~-~~~k~~I~~~-G~I~~Lv~l 443 (636)
.++.+|+-+|-.|-+.+++. +--.+....++.+|...+-.+...+...+.-|++ . +..+..+..+ +-+..++..
T Consensus 163 ~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~ 239 (938)
T KOG1077|consen 163 YVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVV 239 (938)
T ss_pred HHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhh
Confidence 34555555555555555542 2223567889999987777777777777777777 3 3334333221 111111111
Q ss_pred Hh----------cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCC-------HHHHHHHHHHHHhhhhc
Q 006669 444 LR----------AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGS-------TRGRKDAATALFNLCIY 506 (636)
Q Consensus 444 L~----------~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~-------~~~k~~A~~aL~nL~~~ 506 (636)
-. -+.|=.+...+++|.+.-..++.-....-...+..++...++.. ..++-..+.-..+|..+
T Consensus 240 ~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h 319 (938)
T KOG1077|consen 240 VGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIH 319 (938)
T ss_pred cccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHH
Confidence 10 02344666778888877433333222222234444444444221 11222223333345544
Q ss_pred c-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Q 006669 507 M-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLS 584 (636)
Q Consensus 507 ~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~ 584 (636)
- +....+.+ ++..|-++|.+.+..++-.|+..+..|+++.....++... ...++..|+ ..+-.+++.|+..|..
T Consensus 320 ~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 320 LDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred cCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHH
Confidence 3 34444443 6888999999888899999999999999987766666544 677778888 4567899999999999
Q ss_pred hhccChHHHHHHH
Q 006669 585 LCKRDTENLACIS 597 (636)
Q Consensus 585 L~~~~~~~~~~i~ 597 (636)
+|- .++...++
T Consensus 396 mcD--~~Nak~IV 406 (938)
T KOG1077|consen 396 MCD--VSNAKQIV 406 (938)
T ss_pred Hhc--hhhHHHHH
Confidence 994 35555543
No 170
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.56 E-value=0.098 Score=48.62 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=74.2
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHHHhcccCCCCcchhhchhHH
Q 006669 35 GVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKI 114 (636)
Q Consensus 35 ~~~rk~~~~l~rr~~ll~~l~eel~~~~~~~~~~~~~~~~~~~~~~l~eL~~al~~ak~Ll~~~~c~~~Sk~~l~~~~~v 114 (636)
..+|.-+.++..-+.-+.|+++||...+ ..+ +.....-+++|...|++++.|++. |.+.++.-+++....
T Consensus 30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~-------~el-d~~~~ee~e~L~~~L~~g~~LV~k--~sk~~r~n~~kk~~y 99 (147)
T PF05659_consen 30 LSFKSILKRLESTLESIIPIIKEIDKLN-------VEL-DRPRQEEIERLKELLEKGKELVEK--CSKVRRWNLYKKPRY 99 (147)
T ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHh-------hhc-CCchhHHHHHHHHHHHHHHHHHHH--hccccHHHHHhhHhH
Confidence 4557777888889999999999998764 222 334477889999999999999999 998887745577779
Q ss_pred HHHHHHHHHHHHHHhc-CCCCC
Q 006669 115 SFQFQCVMWKLEKALG-NIPYD 135 (636)
Q Consensus 115 ~~~~~~~~~~~~~~L~-~lp~~ 135 (636)
..+++++-.+|...++ .+|+.
T Consensus 100 ~~Ki~~le~~l~~f~~v~~q~~ 121 (147)
T PF05659_consen 100 ARKIEELEESLRRFIQVDLQLH 121 (147)
T ss_pred HHHHHHHHHHHHHHhcchhHHH
Confidence 9999999999999997 46763
No 171
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.55 E-value=0.1 Score=46.36 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 006669 350 DVVAIEALVRKLS-SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLS 422 (636)
Q Consensus 350 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs 422 (636)
+...+..|++.|. +.++....-|+..|..+++..|..|..+.+.|+-..++.++.++|++++.+|+.++-.|.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3457899999994 446666777889999999999999999988999999999999999999999999886553
No 172
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.022 Score=58.99 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=39.7
Q ss_pred CCcccCccchhhccC-------------CeecCCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669 255 PADFLCPISLELMRD-------------PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL 302 (636)
Q Consensus 255 p~~f~CPis~~~m~d-------------Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l 302 (636)
-+|=.|-||++-|-. |--+||||.+--+|...|+++ ..|||+|+.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 456779999998633 357999999999999999985 68999999984
No 173
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.32 Score=54.50 Aligned_cols=219 Identities=18% Similarity=0.114 Sum_probs=129.1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC------c-hhH
Q 006669 398 VLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD------E-NKI 470 (636)
Q Consensus 398 ~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~------~-~~~ 470 (636)
.|..+....|..++.+|+..|+.|+..-.... -.....++.++..+..+|..|...++-.+... + +..
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhcccccccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 37777778899999999999999876222212 23456678888888889988877766554322 1 111
Q ss_pred HHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHH------
Q 006669 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVL------ 544 (636)
Q Consensus 471 ~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L------ 544 (636)
.+. ..++..+.+.+++.+..++..|+.+|..+-...+ .++..-.=..++.-++. .....+..-....+-
T Consensus 277 kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRR-kr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 277 KLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRR-KRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhh-hhhcccchHHHHhcCCcccCc
Confidence 111 2467777888888888888899998887743221 11111111112221110 000111111111111
Q ss_pred ---hc-----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHH
Q 006669 545 ---AS-----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERA 616 (636)
Q Consensus 545 ---a~-----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~ 616 (636)
+. ..+....|+..|+-..+|.=|...--++|.+|+..+..|+.+.|...... +.-|+.++.+.-..+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFNDEIEVV 426 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhccHHHHH
Confidence 00 11122345566666666665555556788888888888888777655443 456777777777777
Q ss_pred HHHHHHHHHHhhccc
Q 006669 617 KRKATSLLEHLRKLP 631 (636)
Q Consensus 617 k~kA~~lL~~l~~~~ 631 (636)
|.+|...|+.|..+-
T Consensus 427 RL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 427 RLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788887777776553
No 174
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.38 E-value=0.23 Score=48.38 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHHhhhCcchHHHHHH----------------hCChHHHHHHHhcC------cHHHHHHHHHHHHHccC
Q 006669 407 DVMTQEHAVTAILNLSIYENNKGLIML----------------AGAIPSIVQILRAG------SMEARENAAATLFSLSL 464 (636)
Q Consensus 407 d~~~~e~Av~aL~nLs~~~~~k~~I~~----------------~G~I~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~ 464 (636)
+...-..++.+|.||+..+..+..+.. ...+..|++.+..| ...-....+.+|.|+|.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344556778888888887777665443 22577777776552 23455688899999999
Q ss_pred CCchhHHHHhc--Cc--hHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHh---chHHHHHHHh
Q 006669 465 LDENKIIIGAS--GA--IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRA---GIISALLKML 526 (636)
Q Consensus 465 ~~~~~~~i~~~--g~--i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~---g~v~~Lv~lL 526 (636)
..+.|..+... +. +..|+..+...+..-+.-++.+|.|.|...+....+... +++|.|+--|
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 99999998876 34 667777777777777788899999999999888888763 4455444444
No 175
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.34 E-value=8.2 Score=45.67 Aligned_cols=214 Identities=16% Similarity=0.159 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc----CCC----hHHHHHHH
Q 006669 349 GDVVAIEALVRKLSS-----RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT----TDD----VMTQEHAV 415 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s-----~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~----s~d----~~~~e~Av 415 (636)
.+.+++..++..+.+ +..+.....++.|+..++ -..||..+.+.|+++.|+..|. .+. +.+-+.-+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 344567777777764 233344455666666676 4789999999999999998774 333 45555555
Q ss_pred HHHHHhhhCcchHHHH-----HHhC-----C---hHHHHHHHhcC----cHHHHHHHHHHHHHccCCCchhHHHHhcCch
Q 006669 416 TAILNLSIYENNKGLI-----MLAG-----A---IPSIVQILRAG----SMEARENAAATLFSLSLLDENKIIIGASGAI 478 (636)
Q Consensus 416 ~aL~nLs~~~~~k~~I-----~~~G-----~---I~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i 478 (636)
.++.-|.........- .... . +..+++.+.+. ++.+....+++|-+|+..++.+....-. .+
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F 271 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HF 271 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HH
Confidence 5554443311110000 1111 2 55566666543 5788899999999999887655443221 22
Q ss_pred HHHHhhhcc--C---CHHHHHHHHHHHHhhh----hcc---chHHHHHHhchHHHHHHHhcC--------CCHHHH----
Q 006669 479 PALVDLLQN--G---STRGRKDAATALFNLC----IYM---GNKGRAVRAGIISALLKMLTD--------SRNCMV---- 534 (636)
Q Consensus 479 ~~Lv~LL~~--~---~~~~k~~A~~aL~nL~----~~~---~n~~~lv~~g~v~~Lv~lL~~--------~~~~~~---- 534 (636)
.+.+++=+- . +.... +..+..++ .+. .-|..+++.|++...++.|.. .+++++
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 332232111 1 11222 33333332 222 127889999999988888754 233333
Q ss_pred ----HHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc
Q 006669 535 ----DEALTILSVLASNPEAKIAIVKASTIPVLIVLLR 568 (636)
Q Consensus 535 ----~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~ 568 (636)
..++..|.-||.....-+.+...+++ +++.-|.
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE 385 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE 385 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh
Confidence 35788888888865544444556667 4445554
No 176
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.27 E-value=0.021 Score=54.02 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=37.9
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL 302 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l 302 (636)
.|.|-||.+-++.||+..|||+||-.|-.+-+.. ..+|-+|+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 4999999999999999999999999997766654 46788887643
No 177
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.021 Score=57.62 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=40.4
Q ss_pred CcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
=.|-|-||.+.+.+||+..|||+||-.|--+.+.. ...|++|.+...
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 35889999999999999999999999998877764 477999987653
No 178
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.11 E-value=3.2 Score=41.97 Aligned_cols=91 Identities=24% Similarity=0.283 Sum_probs=66.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhccChHHHHH
Q 006669 518 IISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT--GLPRNKENAAAILLSLCKRDTENLAC 595 (636)
Q Consensus 518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~ 595 (636)
+|..|++-+..++.-.+-.+..++..|-+ .-.||.|.+.|.. ..|.+|..|+.+|..++..
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------- 250 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------- 250 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------
Confidence 55666666666666666666666665543 2468899888865 4689999999999888742
Q ss_pred HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 596 ISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 596 i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
..++.|.+++.+..+-+++.+..+|.++..
T Consensus 251 ----~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 251 ----DCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred ----HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 256677788888888888888888887643
No 179
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.02 E-value=1.1 Score=49.53 Aligned_cols=153 Identities=19% Similarity=0.165 Sum_probs=109.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCH----HHHHHHHHHHHhhhhccchHHHH
Q 006669 438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGST----RGRKDAATALFNLCIYMGNKGRA 513 (636)
Q Consensus 438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~----~~k~~A~~aL~nL~~~~~n~~~l 513 (636)
..+++++.+|++..+..|...|.+++.+......+.+..++..|..++.+|.. ......+.++..|--+.-.-...
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 45678888999999999999999999999988888888999999999998854 34444555555543222111112
Q ss_pred HHhchHHHHHHHh--cCCCHHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669 514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 514 v~~g~v~~Lv~lL--~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
+...+|.....+. ...+..+...|+..|.++..+.. -+..+.+.--+..|+..++.++.....+|.+.|-.+....+
T Consensus 166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAP 245 (713)
T ss_pred cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCC
Confidence 2222333333333 22455667789999998887655 56677777789999999998888888888888887765544
No 180
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.97 E-value=3.2 Score=45.16 Aligned_cols=185 Identities=19% Similarity=0.250 Sum_probs=119.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccC---hhhHHHHHhcCCHHHHHHhhcCCC-------hHHHHHHHHHHHHhhhCcc
Q 006669 357 LVRKLSSRSVEERRAAVAEIRSLSKRS---TDNRIIIADAGAIPVLVNLLTTDD-------VMTQEHAVTAILNLSIYEN 426 (636)
Q Consensus 357 Lv~~L~s~~~~~~~~Al~~L~~La~~~---~~~r~~i~e~g~i~~Lv~lL~s~d-------~~~~e~Av~aL~nLs~~~~ 426 (636)
+..+++..+.++|..|+--...+.|.+ ..+|+.+.++-+.+.+-++|.+.+ .-.+.-++++|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 566667777888888888888888754 456888999988899999997633 2345567777877777665
Q ss_pred h--HHHHHHhCChHHHHHHHhcC-cHH------HHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc--cCCHHHHHH
Q 006669 427 N--KGLIMLAGAIPSIVQILRAG-SME------ARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ--NGSTRGRKD 495 (636)
Q Consensus 427 ~--k~~I~~~G~I~~Lv~lL~~~-~~e------~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~--~~~~~~k~~ 495 (636)
. ...|+ ..||.|.+++..+ +++ ..+.+-.+|..++..+.....+...|+++.+.++-. ++.. ...-
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~-d~al 172 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSH-DMAL 172 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCch-hHHH
Confidence 4 23343 4689999999764 333 677888999999998888888888999999986532 2221 1112
Q ss_pred HHHHHHh----hhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 496 AATALFN----LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 496 A~~aL~n----L~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
++..+.- +-...+.-.++.. .|..+..-+...+...+-+.+.+|..+-.
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2222221 1122233333332 24444444444566677788888875433
No 181
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.96 E-value=0.26 Score=55.73 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=94.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhhCcchH---HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHHH
Q 006669 397 PVLVNLLTTDDVMTQEHAVTAILNLSIYENNK---GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKIII 472 (636)
Q Consensus 397 ~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k---~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i 472 (636)
..+++.|++..+.++.+|+..+..++.--.++ ..+...|. .|.+-|....+|+.-.-+.++..+..... .+..=
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 34456677888899999998888887632222 12222332 34455656677776555555554432221 11111
Q ss_pred HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
=-.+.+|.|.-+|++.+..++.+....+..++...+......+ ..+---|+++|...+.+++..|...+..++.
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 1237889999999999999999999999999876544222222 2345568888888888888888776666654
No 182
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.94 E-value=1.3 Score=51.52 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=119.1
Q ss_pred HhcCcHHHHHHHHH-HHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHH
Q 006669 444 LRAGSMEARENAAA-TLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISAL 522 (636)
Q Consensus 444 L~~~~~e~~~~Aa~-~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~L 522 (636)
+.+++...+..|+. ++..++..++- .-.++.++..+...+.+.|+..---|.+....++....+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 44455555555553 44444443331 123455566656667888887766676766666643333 67788
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCCh
Q 006669 523 LKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAV 602 (636)
Q Consensus 523 v~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i 602 (636)
.+=+.++++.++-.|+..|..|=.. ++. ...++++.+++.++++.+|..|+-++..+-.-+++ ...+.|.+
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~-----el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~ 168 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVK-----ELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLI 168 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChH-----HHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHH
Confidence 8888889999999999888765331 121 24678889999999999999999999998875544 34567889
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 603 IPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 603 ~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
..+..++.+.+|.+...|...|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999999999999999999988754
No 183
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.05 Score=54.42 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=40.9
Q ss_pred CCCcccCccchhhccCCeecC-CCchhhhHHHHHHHc-CCCCCCCCCCcccc
Q 006669 254 IPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWID-CGNVTCPKTQQKLE 303 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~-~~~~~cP~~~~~l~ 303 (636)
-..+-.||+|++.-+-|-++. |||.||.-||..-+. ....+||.|+..-.
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 356778999999999998765 999999999988764 23579999987654
No 184
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.62 E-value=1.6 Score=50.96 Aligned_cols=261 Identities=16% Similarity=0.160 Sum_probs=137.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHH
Q 006669 356 ALVRKLSSRSVEERRAAVAEIRS-LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIML 433 (636)
Q Consensus 356 ~Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~ 433 (636)
.|++.+.+++.+.|.-|...|-. |-+. .-+-..=.+...+..|+++|...+.++|..|+.+|.-|+. -++.+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~----- 82 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ----- 82 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH-----
Confidence 68888999998888888776543 2221 1111111123467889999999999999999999998874 22211
Q ss_pred hCChHHHHHHHh----cCcHHHHHHHH-HHHHHccCCCchhHHHHhcCchHHHHhhhccC------CHHHHHHHHHHHHh
Q 006669 434 AGAIPSIVQILR----AGSMEARENAA-ATLFSLSLLDENKIIIGASGAIPALVDLLQNG------STRGRKDAATALFN 502 (636)
Q Consensus 434 ~G~I~~Lv~lL~----~~~~e~~~~Aa-~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~------~~~~k~~A~~aL~n 502 (636)
+..+|+-|. +|....+.-+. .....++..............++.+...|..+ ...++-.++..+..
T Consensus 83 ---le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d 159 (1233)
T KOG1824|consen 83 ---LETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILAD 159 (1233)
T ss_pred ---HHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Confidence 223333332 33222222222 22222222221111111223333333333322 22355555555544
Q ss_pred hhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHH
Q 006669 503 LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAI 581 (636)
Q Consensus 503 L~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~ 581 (636)
+...-+.---=...++...++.-+.+....++..|+.+|..|+....+ ... .+.+..|++=|.. ..+....--+.+
T Consensus 160 ~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~-~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 160 VLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR-DLY--VELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH-HHH--HHHHHHHHhccCCCCchHHHHHHHHH
Confidence 332221110003456777777777777888999999999999884321 111 1234444433332 223333333445
Q ss_pred HHHhhccChHHHHHHHHcCChHHHHHhh---hcCCHHHHHHHHHHHHHhhc
Q 006669 582 LLSLCKRDTENLACISRLGAVIPLTELT---KSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll---~~g~~~~k~kA~~lL~~l~~ 629 (636)
|..+|...+.....- -...++.+.... +..++..+++...++..+-+
T Consensus 237 l~~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSH-LDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHHHHhcchhhcc-cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 555555332211110 123567777777 67889999999999986643
No 185
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=4.6 Score=46.55 Aligned_cols=208 Identities=18% Similarity=0.151 Sum_probs=133.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML 433 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~ 433 (636)
-..|.++|.+.....+..|.+.|-.+.....+. ....|.+|+-..+.+.+++.-.---|+..+....+-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 345788898888888889988666554333332 234678899888999998887766666666543332221
Q ss_pred hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch-HHH
Q 006669 434 AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN-KGR 512 (636)
Q Consensus 434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n-~~~ 512 (636)
-|..+-+-|+.+++.+|..|+++|.++= .-+...=.+-++-+...+.++.+++.|+.||-.|-.-+.+ +..
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 2566667788999999999988887762 2222111222333445567899999999999998655543 444
Q ss_pred HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 513 lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
+ +..+-.+|.+.++.++-.|+.+...+|- +.-..|. +-...|..+|...+...|-..+..|..-|
T Consensus 181 L-----~e~I~~LLaD~splVvgsAv~AF~evCP--erldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred H-----HHHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 3 3445566788888888888888877764 2222221 23455566665555555555555555444
No 186
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.52 E-value=4.9 Score=42.29 Aligned_cols=187 Identities=19% Similarity=0.178 Sum_probs=105.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhhc---cchHHHH
Q 006669 439 SIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCIY---MGNKGRA 513 (636)
Q Consensus 439 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~---~~n~~~l 513 (636)
..+..+.......|+.+...+..+.........+... ..+..+...++.|..+-+..|+.++.-|+.. .+....+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 3344455556778888888877765443333333322 4677778888888776677777777777655 2344555
Q ss_pred HHhchHHHHHHHhcCCC--HHHHHHHHHHHHHHhc---C-hhhHHHHHhcCcHHHHHH--HHcC-C---------CHHHH
Q 006669 514 VRAGIISALLKMLTDSR--NCMVDEALTILSVLAS---N-PEAKIAIVKASTIPVLIV--LLRT-G---------LPRNK 575 (636)
Q Consensus 514 v~~g~v~~Lv~lL~~~~--~~~~~~Al~~L~~La~---~-~~~~~~i~~~g~i~~Lv~--lL~~-~---------s~~~k 575 (636)
.+ ...|.|...+.+.+ ...+..++.+|+.++. . ++......+ .+..+.. .++. + ++.+.
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 54 47888999987754 3444555556665544 2 222221111 1221111 1121 1 13344
Q ss_pred HHHHHHHHHhhcc-ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 576 ENAAAILLSLCKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 576 e~A~~~L~~L~~~-~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
..|+..-.-|... +........ ...++.|..++.+.+..+|-.|...|-.|.+
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4443222222222 222233322 3468999999999999999999999988754
No 187
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=0.56 Score=53.58 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL 430 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~ 430 (636)
..++..++....++++..+..|++.+..+--.. --. -...+|.+.++++++.++..|+....++- ..+...
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~--i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~ 155 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK--ITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDL 155 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH--HHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhh
Confidence 346778888888889998888877666554311 111 23578899999999999998887777764 344566
Q ss_pred HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc
Q 006669 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE 467 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~ 467 (636)
....|.++.|..++.+.++.+..+|.++|..+...+.
T Consensus 156 ~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 6678999999999998899999999999999976554
No 188
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.45 E-value=2.2 Score=49.07 Aligned_cols=242 Identities=14% Similarity=0.068 Sum_probs=153.7
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHH-HhhhCcchHHHHHHhCChHHHHHHHhcCc-HHHHHHHHHHHH
Q 006669 383 STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAIL-NLSIYENNKGLIMLAGAIPSIVQILRAGS-MEARENAAATLF 460 (636)
Q Consensus 383 ~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~-nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~ 460 (636)
...-|...+..|+...|+++..........++..+|. .++. +..+ ....++++...+.+.. .-..-.++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3444566677899999999888777777777777776 2221 1111 0123444444443321 122345778889
Q ss_pred HccCCCc-hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH-HHHH-hchHHHHHHHhcCCCHHHHHHH
Q 006669 461 SLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG-RAVR-AGIISALLKMLTDSRNCMVDEA 537 (636)
Q Consensus 461 ~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~-~lv~-~g~v~~Lv~lL~~~~~~~~~~A 537 (636)
||++.++ .|..|.+.-+++.+-.++-+.++..+..++..+.||..++---. .+++ ...++.....+........-++
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9987765 46667777666666666777788899999999999988765433 3344 3344545555544444555566
Q ss_pred HHHHHHHhcChhh-HHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHH
Q 006669 538 LTILSVLASNPEA-KIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTER 615 (636)
Q Consensus 538 l~~L~~La~~~~~-~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~ 615 (636)
++++..+....++ ...+.+ ......++.++.++.+.++..-+.+.+++.....+....+.....+..+..+-.-.-..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 6677655554333 221333 46678888889999999999988888887766666666676666666666655444455
Q ss_pred HHHHHHHHHHHhhc
Q 006669 616 AKRKATSLLEHLRK 629 (636)
Q Consensus 616 ~k~kA~~lL~~l~~ 629 (636)
.++.|...|...-+
T Consensus 728 ~~~~~~~~l~~a~~ 741 (748)
T KOG4151|consen 728 KREDAAPCLSAAEE 741 (748)
T ss_pred hhhhhhhHHHHHHH
Confidence 56666666655544
No 189
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=93.36 E-value=0.1 Score=43.33 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=34.9
Q ss_pred CcccCccchhhccC-C-eecCCCchhhhHHHHHHHcC--CCCCCCCCCcccc
Q 006669 256 ADFLCPISLELMRD-P-VIVATGQTYERSYIQRWIDC--GNVTCPKTQQKLE 303 (636)
Q Consensus 256 ~~f~CPis~~~m~d-P-v~~~~G~t~~r~~I~~w~~~--~~~~cP~~~~~l~ 303 (636)
-+-.||.|.-.-.| | |.=.|||.|-..||.+|++. ...+||.||++..
T Consensus 31 fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 31 FDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 33446655554434 4 44589999999999999985 3578999998764
No 190
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=93.36 E-value=0.037 Score=58.21 Aligned_cols=34 Identities=15% Similarity=0.480 Sum_probs=30.1
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHH
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWI 288 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~ 288 (636)
-+++.||||+..++||+++||||..||.|-..-.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 3678999999999999999999999999976544
No 191
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=7.5 Score=44.36 Aligned_cols=262 Identities=15% Similarity=0.121 Sum_probs=140.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC--hHHHHHHHHHHHHhhh-CcchHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD--VMTQEHAVTAILNLSI-YENNKG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d--~~~~e~Av~aL~nLs~-~~~~k~ 429 (636)
.+..+-+.|.+.++....-|+.++.++.. .+++..+. .-|+ ++|-+++ .-++..|+-+|+.|-. .++.
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 45566677788888888999999988864 34444443 2244 5665544 3456666666666655 3332
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC--chhHHHHhc-CchHHHHhhhcc----------CCHHHHHHH
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD--ENKIIIGAS-GAIPALVDLLQN----------GSTRGRKDA 496 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~-g~i~~Lv~LL~~----------~~~~~k~~A 496 (636)
+-..+-...++++|.+.++.+...+...+..|+... +++...... +-+..++..-.. ..|=.....
T Consensus 183 -~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred -cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 112345678888888777766666666666665432 233322211 111111111000 123344455
Q ss_pred HHHHHhhhhcc--chHHHHHHhchHHHHHHHhcCC--C-----HHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH
Q 006669 497 ATALFNLCIYM--GNKGRAVRAGIISALLKMLTDS--R-----NCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL 567 (636)
Q Consensus 497 ~~aL~nL~~~~--~n~~~lv~~g~v~~Lv~lL~~~--~-----~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL 567 (636)
+++|.+.-... +.|.++.+ ++..++....++ + ...+...+.-.-+|+.+-+.-..+.. .++..|-++|
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fl 338 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFL 338 (938)
T ss_pred HHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHh
Confidence 66666553222 23444443 334444444321 1 11122222233344444333222222 4567777777
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcc
Q 006669 568 RTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK-SGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 568 ~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~~~ 630 (636)
.+.....|=-|...+..||... .....+... .+.+...++ ..+..++++|..+|-.|+..
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred hcccccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 7777777777888887777652 222233322 555555565 46777788888888877753
No 192
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.25 E-value=5 Score=38.45 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCC-hHHHHHH
Q 006669 365 SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGA-IPSIVQI 443 (636)
Q Consensus 365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~-I~~Lv~l 443 (636)
++.+|..++..+..|+...+. +++ ..+|.+...|+++++.++..|+.+|..|...+-.|. .|- +..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 467788899999998875542 222 357899999999999999999999999976433222 233 3777788
Q ss_pred HhcCcHHHHHHHHHHHHHccCC
Q 006669 444 LRAGSMEARENAAATLFSLSLL 465 (636)
Q Consensus 444 L~~~~~e~~~~Aa~~L~~Ls~~ 465 (636)
+.+.+++++..|..++..++..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8888999999999999998765
No 193
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=2.5 Score=48.66 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=63.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHH
Q 006669 355 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIML 433 (636)
Q Consensus 355 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~ 433 (636)
..|.+.|++++..++-.|+..|.+++. ++-.. ...|.+.++|++.++.++..|+.++..+-. .++.-+.
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~--- 179 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH--- 179 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH---
Confidence 455667778888888899999998874 33222 235777888999999999999888776654 3333222
Q ss_pred hCChHHHHHHHhcCcHHHHHHHHHHHHHccC
Q 006669 434 AGAIPSIVQILRAGSMEARENAAATLFSLSL 464 (636)
Q Consensus 434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 464 (636)
+++....+|.+.+.-+...+...+..++.
T Consensus 180 --f~~~~~~lL~ek~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 180 --FVIAFRKLLCEKHHGVLIAGLHLITELCK 208 (866)
T ss_pred --hhHHHHHHHhhcCCceeeeHHHHHHHHHh
Confidence 24444555555555455455555555543
No 194
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.97 E-value=1.2 Score=42.83 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=75.1
Q ss_pred chHHHHhhhccCCHHHHHHHHHHHHhhhhccch--HHHHHHhchHHHHHHHhcC---------CCHHHHHHHHHHHHHHh
Q 006669 477 AIPALVDLLQNGSTRGRKDAATALFNLCIYMGN--KGRAVRAGIISALLKMLTD---------SRNCMVDEALTILSVLA 545 (636)
Q Consensus 477 ~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n--~~~lv~~g~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La 545 (636)
....+++.+++++... ..+.-|.-...+.+. -..+++.|++..|++.|.. .+......++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4455666666654322 222222221222222 4578889999999998853 23467778999999999
Q ss_pred cChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 546 SNPEAKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 546 ~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
.+..|...+.+ .+++..|+..|.+.+..++..|+.+|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999887 578999999999999999999999999888
No 195
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.96 E-value=0.96 Score=38.93 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcCC
Q 006669 493 RKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRTG 570 (636)
Q Consensus 493 k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~ 570 (636)
++-++.+|...+..-+....-.-.-++++++..+.+.+..++..|+.+|.|++.... ..+.. ...+..|.+++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 444556666655443333222235589999999999999999999999999997543 33333 35677788888777
Q ss_pred CHHHHHHHHHHHHHhh
Q 006669 571 LPRNKENAAAILLSLC 586 (636)
Q Consensus 571 s~~~ke~A~~~L~~L~ 586 (636)
++.+|..| ..|-++.
T Consensus 81 d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAA-ELLDRLL 95 (97)
T ss_pred chhHHHHH-HHHHHHh
Confidence 77777554 6665543
No 196
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.73 E-value=17 Score=39.38 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=73.1
Q ss_pred hCChHHHHHHHhcC---cHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhc-cC---CHHHHHHHHHHHHhhhh
Q 006669 434 AGAIPSIVQILRAG---SMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQ-NG---STRGRKDAATALFNLCI 505 (636)
Q Consensus 434 ~G~I~~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~-~~---~~~~k~~A~~aL~nL~~ 505 (636)
...+..|..++++. .+.+-..|+.++..+..++.. -..+.+.|.++.+++-+. .+ +.++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 34455666777765 366778888888888776654 455666799999999888 54 45666666678888999
Q ss_pred ccchHHHHHHhchHHHHHHHhcC
Q 006669 506 YMGNKGRAVRAGIISALLKMLTD 528 (636)
Q Consensus 506 ~~~n~~~lv~~g~v~~Lv~lL~~ 528 (636)
+..+...+.+.+.++.+++++.+
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCC
Confidence 99999999999999999999865
No 197
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.73 E-value=1.2 Score=45.18 Aligned_cols=93 Identities=13% Similarity=0.211 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhc
Q 006669 369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRA 446 (636)
Q Consensus 369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~ 446 (636)
...|+..|.-++--++..|..+.+..++..|+.+|. +..+.++..++.+|..+.. ++.|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 455778888888888999999999999999999994 4668889999988877655 88999989899999999999987
Q ss_pred C--cHHHHHHHHHHHHH
Q 006669 447 G--SMEARENAAATLFS 461 (636)
Q Consensus 447 ~--~~e~~~~Aa~~L~~ 461 (636)
. +.+++...+..|.-
T Consensus 188 ~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYF 204 (257)
T ss_pred ccccHHHhHHHHHHHHH
Confidence 5 46777777766553
No 198
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.62 E-value=0.52 Score=38.25 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcC
Q 006669 493 RKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKAS 558 (636)
Q Consensus 493 k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g 558 (636)
.|.|++|+.|++..+.+...+.+.++|+.++++... +...++-.|..+|..++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 578999999999988888888888999999999864 677888899999999999999998887655
No 199
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.51 E-value=0.85 Score=39.25 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=54.3
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
..+++++..+...++++|..|+..|.+++...++.... --..+.+.|.+++.+.++++|..|..+-+.|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 46888999998899999999999999999754332211 12457889999999999999988877666653
No 200
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.094 Score=55.33 Aligned_cols=41 Identities=27% Similarity=0.673 Sum_probs=36.9
Q ss_pred ccCccchhhccC---CeecCCCchhhhHHHHHHHcCCC--CCCCCC
Q 006669 258 FLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGN--VTCPKT 298 (636)
Q Consensus 258 f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~--~~cP~~ 298 (636)
|.|||..+-=+| |+.++|||..++.+|.+-..+|. ..||=|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 899999998877 99999999999999999998877 568876
No 201
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.33 E-value=1 Score=45.52 Aligned_cols=146 Identities=17% Similarity=0.127 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC-----hHHHHHHHHHHHHhhh--CcchHHHHHHhCChHHHH
Q 006669 369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD-----VMTQEHAVTAILNLSI--YENNKGLIMLAGAIPSIV 441 (636)
Q Consensus 369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d-----~~~~e~Av~aL~nLs~--~~~~k~~I~~~G~I~~Lv 441 (636)
...|+..+..+|. +++.|..+.++...-.|..+|...+ ...+-.++.++..|.+ +.+.-..+...+.+|..+
T Consensus 67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 3456677777786 6889999999987777888886533 3466778888888888 334466667789999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--------CchHHHHh-hhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669 442 QILRAGSMEARENAAATLFSLSLLDENKIIIGAS--------GAIPALVD-LLQNGSTRGRKDAATALFNLCIYMGNKGR 512 (636)
Q Consensus 442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--------g~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~~~~n~~~ 512 (636)
+.+..|+.-.+.-|.-++..+-.++..-..+.+. ..+..+|. +..+.+++.-+...++-..|+.++..+..
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 9999999889999999999887777655544432 23333333 33456889999999999999988877766
Q ss_pred HHH
Q 006669 513 AVR 515 (636)
Q Consensus 513 lv~ 515 (636)
+..
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 202
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.32 E-value=5.1 Score=43.16 Aligned_cols=246 Identities=19% Similarity=0.168 Sum_probs=135.1
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CC-hHHHHHHHHHHHHhhhCcchH
Q 006669 352 VAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DD-VMTQEHAVTAILNLSIYENNK 428 (636)
Q Consensus 352 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d-~~~~e~Av~aL~nLs~~~~~k 428 (636)
+.+..+++.|.+ .+...|+.++-.|..-+. ++.-|..+...|.+..+++.+.. .+ +..-..++.++.-|+.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 458888888873 345667778777777775 67889999999999999999953 33 333344445555555554444
Q ss_pred HHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc---------CCHHHHHHHHH
Q 006669 429 GLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN---------GSTRGRKDAAT 498 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~---------~~~~~k~~A~~ 498 (636)
..+...+.+..++.+++.. ........- .....+-.++.+ ..+..+.+++.. .....+..|+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 4444556666667777611 000000000 000000001110 111111111110 11223444555
Q ss_pred HHHhhh------------h--ccc-hHHHHHHhchHHHHHHHhcC----C------------CHHHHHHHHHHHHHHhc-
Q 006669 499 ALFNLC------------I--YMG-NKGRAVRAGIISALLKMLTD----S------------RNCMVDEALTILSVLAS- 546 (636)
Q Consensus 499 aL~nL~------------~--~~~-n~~~lv~~g~v~~Lv~lL~~----~------------~~~~~~~Al~~L~~La~- 546 (636)
+|..++ . ..+ -|..+.+.|++..+++.+.+ . +-...+.++.+|.+.+.
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 555552 1 111 26677778899999998752 1 11245678888888776
Q ss_pred ChhhHHHHHh--cCcHHHHHHH-HcCC---CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHH
Q 006669 547 NPEAKIAIVK--ASTIPVLIVL-LRTG---LPRNKENAAAILLSLCKRDTENLACISRLGAVIPL 605 (636)
Q Consensus 547 ~~~~~~~i~~--~g~i~~Lv~l-L~~~---s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L 605 (636)
+.+++..... .+.++.+... ++.. .+.....+++++.|++.+++..+..+...++...+
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~ 317 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQL 317 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccch
Confidence 4455655544 2334444333 3322 23445688999999999998888877665444333
No 203
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.30 E-value=1.8 Score=47.85 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=112.7
Q ss_pred chHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCC----HHHHHHHHHHHHHHhcChhhHH
Q 006669 477 AIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSR----NCMVDEALTILSVLASNPEAKI 552 (636)
Q Consensus 477 ~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~----~~~~~~Al~~L~~La~~~~~~~ 552 (636)
....+.+++.+|+...+..|+.-|..|+....-...++....+..|..++.++. ..+...++.++..+-.+.-.-=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 445677888999999999999999999998888889999999999999997743 3455556666655544322111
Q ss_pred HHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 553 AIVKASTIPVLIVLLRT--GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 553 ~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
..+...+|.....+..- ....+-..|+.+|-++..++......+.+.--++.|...++.++.+.+.+|..++..+
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 11222344455444432 2345567899999999988888888888998999999999999999999999888755
No 204
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.23 E-value=9.5 Score=36.53 Aligned_cols=92 Identities=24% Similarity=0.231 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh
Q 006669 407 DVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL 485 (636)
Q Consensus 407 d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL 485 (636)
++.++.+++.++..|+. ++..-+ ..++.+...|+++++.+|.+|+.+|..|...+--|.. ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 46788999999999987 433222 2478888999999999999999999999765533222 12336777888
Q ss_pred ccCCHHHHHHHHHHHHhhhhc
Q 006669 486 QNGSTRGRKDAATALFNLCIY 506 (636)
Q Consensus 486 ~~~~~~~k~~A~~aL~nL~~~ 506 (636)
.+.++.++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999988765
No 205
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=6.2 Score=47.52 Aligned_cols=218 Identities=19% Similarity=0.244 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Cc-chHHHHHHhCChH
Q 006669 363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADA--GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YE-NNKGLIMLAGAIP 438 (636)
Q Consensus 363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~--g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~-~~k~~I~~~G~I~ 438 (636)
+.+..+|.++-+.|..++.. +......... ..-..|..-+++.+...+..++.+|..|-. ++ +....+.. .|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHH
Confidence 44788999999999998864 2222111110 112334444445556677777777766655 23 33443333 355
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHccC----CCchhHHHHhcCchHHHHhhhccC----CHHHHHHHHHHHHhhhhccchH
Q 006669 439 SIVQILRAGSMEARENAAATLFSLSL----LDENKIIIGASGAIPALVDLLQNG----STRGRKDAATALFNLCIYMGNK 510 (636)
Q Consensus 439 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~~~~n~ 510 (636)
-++-.++.-+...+++|-.+|..+.. .+..... ....+...+..+..| .....-..+.++..+....
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~--- 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF--- 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH---
Confidence 55555577788999999999998862 1111000 112455555555544 2222222244555544322
Q ss_pred HHHHHh----chHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 511 GRAVRA----GIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 511 ~~lv~~----g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
..+++. +.+..+...|.+.+++++..|++.+..++. .|+..-.-.....++.+..+++..+...+..+--.|-.|
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222333 344555555677999999999999998876 454433333334678888888877777777777777777
Q ss_pred hcc
Q 006669 586 CKR 588 (636)
Q Consensus 586 ~~~ 588 (636)
+..
T Consensus 897 irk 899 (1176)
T KOG1248|consen 897 IRK 899 (1176)
T ss_pred HHH
Confidence 653
No 206
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.98 E-value=4.7 Score=41.25 Aligned_cols=184 Identities=18% Similarity=0.187 Sum_probs=114.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhC--ChHHHHHHHhc----CcHHHHHHHHHHHHHccCCCchhH
Q 006669 397 PVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAG--AIPSIVQILRA----GSMEARENAAATLFSLSLLDENKI 470 (636)
Q Consensus 397 ~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G--~I~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~~~ 470 (636)
..+...+.+-..+.+--++.+++-+..++..-..+...+ ....+..++.. ..+..+.-+++++.|+-.....+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 345555555455556677777777777776655554432 34555555543 357788889999999988888888
Q ss_pred HHHhc-C-chHHHHhhhccC----CHHHHHHHHHHHHhhhhccc-hH-HHHHHhchHHHHHHHh-cC-CCHHHHHHHHHH
Q 006669 471 IIGAS-G-AIPALVDLLQNG----STRGRKDAATALFNLCIYMG-NK-GRAVRAGIISALLKML-TD-SRNCMVDEALTI 540 (636)
Q Consensus 471 ~i~~~-g-~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~~~~-n~-~~lv~~g~v~~Lv~lL-~~-~~~~~~~~Al~~ 540 (636)
.+... + .+-..+..+... +...+..+++.++|++...- ++ ..-.....+..+++.+ .. .+++....++.+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 77766 4 455554444444 57788889999999975431 11 1112223456666643 33 688999999999
Q ss_pred HHHHhcChhhHHHHHhc-CcHHHHHHHHc-CCCHHHHHHHHH
Q 006669 541 LSVLASNPEAKIAIVKA-STIPVLIVLLR-TGLPRNKENAAA 580 (636)
Q Consensus 541 L~~La~~~~~~~~i~~~-g~i~~Lv~lL~-~~s~~~ke~A~~ 580 (636)
|.+|...+......... |+-..+-..-. ...++.++.+..
T Consensus 226 lGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 99999877666666553 33333333332 345777776543
No 207
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.95 E-value=1.7 Score=44.21 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh
Q 006669 533 MVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK 610 (636)
Q Consensus 533 ~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~ 610 (636)
....|+.+|.-+|- ||..+..+.+...+..++.+|. ..++.++-.++.+|..+...++.+...+.+.+|+..+..+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 44567788876665 8999999999999999999995 456889999999999999999999999999999999999998
Q ss_pred cC--CHHHHHHHHHHHHHh
Q 006669 611 SG--TERAKRKATSLLEHL 627 (636)
Q Consensus 611 ~g--~~~~k~kA~~lL~~l 627 (636)
+. +..+|-|..+.|-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 64 577888888877644
No 208
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.91 E-value=11 Score=40.21 Aligned_cols=198 Identities=15% Similarity=0.104 Sum_probs=145.6
Q ss_pred HHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH-----HHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHH
Q 006669 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK-----GLIMLAGAIPSIVQILRAG--SMEARENAAATLFS 461 (636)
Q Consensus 390 i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k-----~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~ 461 (636)
+...+.+..|+..|..-+-+.+..++.+..++... ..++ ..+. .--+-++..|-.| +++....+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~--~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE--RHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH--T--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH--hCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 44568889999999989999999999999998763 2222 1222 2223444444343 57777888888888
Q ss_pred ccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHh---chHHHHHHHhcCCCHHHHHHH
Q 006669 462 LSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRA---GIISALLKMLTDSRNCMVDEA 537 (636)
Q Consensus 462 Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~---g~v~~Lv~lL~~~~~~~~~~A 537 (636)
....+.....|.....+..+.+.++.++-++..+|...+..|-..+ .-.+..+.. ..+.....+|.+++=-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 8877777777777888888999999999999999999999876554 344555543 466778888888888899999
Q ss_pred HHHHHHHhcChhhHHHHHh----cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669 538 LTILSVLASNPEAKIAIVK----ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 538 l~~L~~La~~~~~~~~i~~----~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 589 (636)
+..|..|-..+.+-..+.. ..-+..++.+|++.+..++-.|..+..-...+.
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999998888776654 234777888889999999999999998777653
No 209
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=0.12 Score=51.11 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=42.8
Q ss_pred CCcccCccchhhccC----CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669 255 PADFLCPISLELMRD----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP 309 (636)
Q Consensus 255 p~~f~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 309 (636)
...|.|||++-.|.+ -++.+|||.|.-++.++.- ..+|++|++.+...+.++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 356999999999977 4578999999999877643 578999999998877653
No 210
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.57 E-value=0.43 Score=42.52 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=55.8
Q ss_pred CHHHHHHhh-cCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHc
Q 006669 395 AIPVLVNLL-TTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSL 462 (636)
Q Consensus 395 ~i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~L 462 (636)
.+..|+.+| .+.|+.+..-|+.=|..+.. +|..+..+-+.|+=..++.++.+++++++.+|+.++..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 467899999 44577777778888888888 788888887889999999999999999999999988765
No 211
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.57 E-value=6.7 Score=40.93 Aligned_cols=186 Identities=17% Similarity=0.190 Sum_probs=118.6
Q ss_pred CHHHHH-HhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch--hHH
Q 006669 395 AIPVLV-NLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN--KII 471 (636)
Q Consensus 395 ~i~~Lv-~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~ 471 (636)
.+..|+ ..+.+.++.+++.|+.+|.-.+..+. .+.. ..++.+...+..++.+++..|+.+++.+...... ...
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 344444 67788999999999999998887433 1111 2367788888888999999999999998554321 111
Q ss_pred -------HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC----CCHHHHHHHHHH
Q 006669 472 -------IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD----SRNCMVDEALTI 540 (636)
Q Consensus 472 -------i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~----~~~~~~~~Al~~ 540 (636)
......++.+.+.+.+.+++.+..|+..+..|..++.... ...++..|+-+-.+ .+..++..-...
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 1223567778888888889999999999999876553322 23345555555433 344555444455
Q ss_pred HHHHhcChhhHHHHHhcCcHHHHHHHHcCC----CHHH---HHHHHHHHHHhhc
Q 006669 541 LSVLASNPEAKIAIVKASTIPVLIVLLRTG----LPRN---KENAAAILLSLCK 587 (636)
Q Consensus 541 L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~----s~~~---ke~A~~~L~~L~~ 587 (636)
+-..|......+......++|.+-.+.... ++.. -...+..+..++.
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 556666554444555667778877777642 2211 2245566666664
No 212
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=5.1 Score=46.64 Aligned_cols=214 Identities=18% Similarity=0.152 Sum_probs=130.4
Q ss_pred cCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHh
Q 006669 404 TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVD 483 (636)
Q Consensus 404 ~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 483 (636)
..+-+.++-.++..|..+.....-+..+...+.+....+.|++.++-+-.+|...+..|+... ....+|-|.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-------~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-------PEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------chhhHHHHHH
Confidence 334456777888888888875566677778889999999999988888888888777776542 2245566655
Q ss_pred -hhccC--C-HHHHHHHHHHHHhhhhccch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HHHHHh
Q 006669 484 -LLQNG--S-TRGRKDAATALFNLCIYMGN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA--KIAIVK 556 (636)
Q Consensus 484 -LL~~~--~-~~~k~~A~~aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~ 556 (636)
..... + ++.+...-.|+.++....+. ..+.. +-.+...+..+++++...+..++++|++||.--.. ...+.
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~- 887 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH- 887 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-
Confidence 33221 1 22333333555555433221 11111 23556667777777777888899999999874332 12222
Q ss_pred cCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhccChHHHHHHHHcCC---hHHHHHhhhc-CCHHHHHHHHHHHHHh
Q 006669 557 ASTIPVLIVLLRT-GLPRNKENAAAILLSLCKRDTENLACISRLGA---VIPLTELTKS-GTERAKRKATSLLEHL 627 (636)
Q Consensus 557 ~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~---i~~L~~Ll~~-g~~~~k~kA~~lL~~l 627 (636)
.++..++.+.+. +++-.|..|+-++..+-.+.+...-.+.+.-. ...+...... .++.+|-.|...+..+
T Consensus 888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 245555666654 67889999999998887766555444443323 3333334433 3455566666555544
No 213
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=13 Score=42.96 Aligned_cols=257 Identities=19% Similarity=0.188 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccc-----
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YEN----- 426 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~----- 426 (636)
..+++=..|++...-+..+|++.+..|...++ | .+. .++..|-.+|++..+.++..|+.+|..++. ++.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r-~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--R-ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--h-hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 45566667777788889999999999875443 2 121 277888888999999999999999999987 432
Q ss_pred hH---HHHHHh---CChHHHHHHHhcCcHHHHHHHHHHHHHccC--CCchhHHHHhc-------------CchHHHHhhh
Q 006669 427 NK---GLIMLA---GAIPSIVQILRAGSMEARENAAATLFSLSL--LDENKIIIGAS-------------GAIPALVDLL 485 (636)
Q Consensus 427 ~k---~~I~~~---G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~i~~~-------------g~i~~Lv~LL 485 (636)
|+ ..|-.. -+-..+..+|+.|+.+....-...+.+... +++++..+.++ +.+..|-.+|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 11 122221 134566677777765544444433333321 13343322211 2223333333
Q ss_pred cc-CCHHHHHHHHHHHHhhhh-ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHH
Q 006669 486 QN-GSTRGRKDAATALFNLCI-YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVL 563 (636)
Q Consensus 486 ~~-~~~~~k~~A~~aL~nL~~-~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~L 563 (636)
++ |.-+-|+....++..+.. +++.|.. ++..|...+.+ -+....+..+|..|-.... ....-...+..+
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIED--ce~~~i~~rILhlLG~EgP--~a~~Pskyir~i 471 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIED--CEFTQIAVRILHLLGKEGP--KAPNPSKYIRFI 471 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh--ccchHHHHHHHHHHhccCC--CCCCcchhhHHH
Confidence 22 222333333333333222 1111211 22223333322 1222334444444332100 000001122233
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 564 IVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 564 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
...+.-.+..++..|+.+|..+...++. ....+.-.|...+.+.++.+|+.|+..|+.+.
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3323334566677777777777643321 12223444556667789999999999999987
No 214
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.20 E-value=4.1 Score=44.42 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=95.2
Q ss_pred HHHhcCcHHHHHHHHHHHHHccCCCc----hhHHHHhcCchHHHHhhhccC------CHH-HHHHHHHHHHhhhhccch-
Q 006669 442 QILRAGSMEARENAAATLFSLSLLDE----NKIIIGASGAIPALVDLLQNG------STR-GRKDAATALFNLCIYMGN- 509 (636)
Q Consensus 442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~LL~~~------~~~-~k~~A~~aL~nL~~~~~n- 509 (636)
.+++..+.+-+-.|.-.+..+.-.++ +|..+.++-+++.+=.++..+ ++. -+..++..|...|..++-
T Consensus 18 ~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA 97 (698)
T KOG2611|consen 18 KLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA 97 (698)
T ss_pred HHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc
Confidence 33333344455555555555554443 677788887778888888754 222 345567788888887753
Q ss_pred -HHHHHHhchHHHHHHHhcC-CC------HHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHH
Q 006669 510 -KGRAVRAGIISALLKMLTD-SR------NCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL-PRNKENAAA 580 (636)
Q Consensus 510 -~~~lv~~g~v~~Lv~lL~~-~~------~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~ 580 (636)
...+++ .||.|.+.+.. .+ ..+.+.+-.+|..+++++.|...++..|+++.+.++-.-.+ .....-|..
T Consensus 98 sh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 98 SHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred cCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 556664 69999999854 22 34889999999999999999999999999999997654322 223334444
Q ss_pred HHHHh
Q 006669 581 ILLSL 585 (636)
Q Consensus 581 ~L~~L 585 (636)
++.-+
T Consensus 176 Vlll~ 180 (698)
T KOG2611|consen 176 VLLLL 180 (698)
T ss_pred HHHHH
Confidence 44433
No 215
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=12 Score=43.28 Aligned_cols=218 Identities=20% Similarity=0.250 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-------------------
Q 006669 365 SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE------------------- 425 (636)
Q Consensus 365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~------------------- 425 (636)
+...|.-.+..|+..+..++.-+... |..+..+|.+.++.+..+|...|.+||.++
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 45556666667777666555544433 456777776666555555555554444322
Q ss_pred chHHHHHH--------------hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc----
Q 006669 426 NNKGLIML--------------AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN---- 487 (636)
Q Consensus 426 ~~k~~I~~--------------~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~---- 487 (636)
.|-..|+. .|.+--++++|.+++-+++..+..+.+.|+... -+..++.+|+.
T Consensus 294 nnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~k 363 (948)
T KOG1058|consen 294 NNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMK 363 (948)
T ss_pred cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHh
Confidence 22222210 122223334444555666666666666554433 33444444431
Q ss_pred ---C----CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCc
Q 006669 488 ---G----STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKAST 559 (636)
Q Consensus 488 ---~----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~ 559 (636)
+ +..-+..-..++..-+..-+ =+.+.+|+.|++.+.+.++......+..+...-. .|.-|..|
T Consensus 364 T~~~e~d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i----- 434 (948)
T KOG1058|consen 364 THNEESDDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI----- 434 (948)
T ss_pred ccccccccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----
Confidence 1 12234444455554443221 1345689999999998887665555555543332 44444444
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhhccChHHHH--HHH--HcCChHHHH
Q 006669 560 IPVLIVLLRT-GLPRNKENAAAILLSLCKRDTENLA--CIS--RLGAVIPLT 606 (636)
Q Consensus 560 i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~--~i~--~~G~i~~L~ 606 (636)
|..|++-+.. .+.+.-+.|+|++..-|....+... ..+ ..|-+|.+.
T Consensus 435 i~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~ 486 (948)
T KOG1058|consen 435 IEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVC 486 (948)
T ss_pred HHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceeh
Confidence 4455554432 4566778899999988876653333 222 245555444
No 216
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.13 Score=55.31 Aligned_cols=51 Identities=18% Similarity=0.443 Sum_probs=38.5
Q ss_pred CCCcccCccchhhc-----------------cCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 254 IPADFLCPISLELM-----------------RDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 254 ~p~~f~CPis~~~m-----------------~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
+-+.--||||+... ++=.+.||.|.|-|.|.++|.+.-.-.||+|+.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 33445799998643 1234569999999999999998545589999998864
No 217
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=90.88 E-value=30 Score=38.86 Aligned_cols=266 Identities=14% Similarity=0.109 Sum_probs=137.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----cCC-ChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL----TTD-DVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 358 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL----~s~-d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
++.|+++.+.....|+..+..++.-.- -.|..|-|...+ ..+ ....+.+++.++.+.+..+.....+.
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~El-------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~ 172 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMEL-------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQ 172 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhC-------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHH
Confidence 455677777777777777766664211 124555555444 222 24567888999999988655555554
Q ss_pred HhC-ChHHHH-HHHhcC-cHHHHHHHHHHHHH-ccCCCchhHHHHhcC-chHHHHhhhccCCHHHHHHHHHHHHhhh-hc
Q 006669 433 LAG-AIPSIV-QILRAG-SMEARENAAATLFS-LSLLDENKIIIGASG-AIPALVDLLQNGSTRGRKDAATALFNLC-IY 506 (636)
Q Consensus 433 ~~G-~I~~Lv-~lL~~~-~~e~~~~Aa~~L~~-Ls~~~~~~~~i~~~g-~i~~Lv~LL~~~~~~~k~~A~~aL~nL~-~~ 506 (636)
..+ ++-.++ .-++++ +..+|..|+.+|.+ |-+..+|-..=.+.+ .+...++.-+..+.+.+..|..+|..+. .+
T Consensus 173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence 443 333333 345555 56788888888887 543332211111222 2333444444456667777777776653 22
Q ss_pred cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHH----------------HhcCcHHHHHHHHcC
Q 006669 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP-EAKIAI----------------VKASTIPVLIVLLRT 569 (636)
Q Consensus 507 ~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~~~~~i----------------~~~g~i~~Lv~lL~~ 569 (636)
...-....+.-......+.+++.++++...|+..-..+|..+ ++.-++ .-.+++|.|+.+|..
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 222223333333344455566666666555554444444311 000000 001244455554432
Q ss_pred ---------------------------------------------CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHH
Q 006669 570 ---------------------------------------------GLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604 (636)
Q Consensus 570 ---------------------------------------------~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~ 604 (636)
.+...++.|+.++..+..+..+.+..-+-+.++|.
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~ 412 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPG 412 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHH
Confidence 33344455555554444333233333333445666
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 605 LTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 605 L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
+..+..+..--++..++|.+-.+..+
T Consensus 413 i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 413 IENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHHhcccceeehhhHHHHHHHHHHHH
Confidence 77666666677788888888777553
No 218
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.66 E-value=4.3 Score=47.49 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=124.4
Q ss_pred cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhc
Q 006669 448 SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT 527 (636)
Q Consensus 448 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~ 527 (636)
.+.++..|++++..-+... ...=...+.+..|.++....+.++--.-+.+|...+..++......+.-+.|-.+.++.
T Consensus 504 ~~~~ki~a~~~~~~~~~~~--vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKVK--VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CCchhHHHHHHHHhccCce--eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 4566777777777655111 00111236788888888877888888888999999998888888888888888888763
Q ss_pred --CCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCC----HHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 006669 528 --DSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL----PRNKENAAAILLSLCKRDTENLACISRLGA 601 (636)
Q Consensus 528 --~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s----~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~ 601 (636)
+.++-+...+-.++..|+....+..-+. ...||.++..|.... +....-|+.+|-.+.++.+.-.....-.-+
T Consensus 582 k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA 660 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3667777888888887777544444332 357999999998643 455566777887777776544333222235
Q ss_pred hHHHHHh-hhcCCHHHHHHHHHHHHHhhc
Q 006669 602 VIPLTEL-TKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 602 i~~L~~L-l~~g~~~~k~kA~~lL~~l~~ 629 (636)
.+++.+. +++++...-+.|.++|+.+-.
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 6666654 577888888999999997754
No 219
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.52 E-value=10 Score=39.55 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=106.1
Q ss_pred HHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccc-hHH
Q 006669 353 AIEALV-RKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YEN-NKG 429 (636)
Q Consensus 353 ~i~~Lv-~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~-~k~ 429 (636)
.+..|+ ..+.+.+..+|+.|+++|...+--+.+... ..++.+...+..++..++..|+.++..+.. +.. .-.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 667888999999999999998865542221 236678888877889999999999998875 321 111
Q ss_pred -------HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC----CHHHHHHHHH
Q 006669 430 -------LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG----STRGRKDAAT 498 (636)
Q Consensus 430 -------~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~----~~~~k~~A~~ 498 (636)
.......+..+...|.+.+++++..|+..+..|-..+.... ....+..|+-+--+. +.+.+..-..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 11223466777788888899999999999988755443222 123334444332222 2344443333
Q ss_pred HHHhhhhccchHHHHHHhchHHHHHHHhcC
Q 006669 499 ALFNLCIYMGNKGRAVRAGIISALLKMLTD 528 (636)
Q Consensus 499 aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~ 528 (636)
.+-..+..+...+..+....++.+-.+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 344456656555666666777777776644
No 220
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.08 E-value=18 Score=36.69 Aligned_cols=196 Identities=22% Similarity=0.190 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC---
Q 006669 350 DVVAIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY--- 424 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~--- 424 (636)
+..+++.|+..|... .+-++.+|..+|..+.. + ..++.+-+..+.+...+.+....++..+-..
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 345789999988644 45667788888877762 1 2344555555444455555555555444321
Q ss_pred cc--hHHHHH--------HhCChHHHHHHHhcCc-H-HHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHH
Q 006669 425 EN--NKGLIM--------LAGAIPSIVQILRAGS-M-EARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRG 492 (636)
Q Consensus 425 ~~--~k~~I~--------~~G~I~~Lv~lL~~~~-~-e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~ 492 (636)
+. +..... .-+-+..+-..|...+ + --+..|.-.|.|+ +...+|..|++=+..++.-.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALF 203 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHH
Confidence 00 000000 1122344444444332 1 2233333333333 22236677777777778888
Q ss_pred HHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC
Q 006669 493 RKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG 570 (636)
Q Consensus 493 k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~ 570 (636)
+..++.++..|-.- -+||.|.+.|.+ .++.++-.|+.+|..++. ..+++.|.+++...
T Consensus 204 rhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCc
Confidence 88888888877432 378889998866 677788889999987665 35678888888888
Q ss_pred CHHHHHHHHHHHHHhh
Q 006669 571 LPRNKENAAAILLSLC 586 (636)
Q Consensus 571 s~~~ke~A~~~L~~L~ 586 (636)
++-+++.|..+|-.+-
T Consensus 264 ~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877775443
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.06 E-value=16 Score=44.34 Aligned_cols=254 Identities=17% Similarity=0.200 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh----CcchHHHHHHhCChHH
Q 006669 365 SVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI----YENNKGLIMLAGAIPS 439 (636)
Q Consensus 365 ~~~~~~~Al~~L~~La~~-~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~----~~~~k~~I~~~G~I~~ 439 (636)
..+.+..|+.-|..|+.. +++++- .-.+|.++.++...++.+|..|+.+|..+.. .+..-..|.-.-.+|.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 346788899999999864 233322 2358999999998899999999988877643 1222233444456788
Q ss_pred HHHHHhcCc-HHHHHHHHHHHHHccC------------------CCchhH---------HHHhc-CchHH-HHhhhccCC
Q 006669 440 IVQILRAGS-MEARENAAATLFSLSL------------------LDENKI---------IIGAS-GAIPA-LVDLLQNGS 489 (636)
Q Consensus 440 Lv~lL~~~~-~e~~~~Aa~~L~~Ls~------------------~~~~~~---------~i~~~-g~i~~-Lv~LL~~~~ 489 (636)
|-+++.+.+ ..++..-|..|..|+. ++.+-. ...+. ..+.. .+.+|.+.+
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 888887632 3333332333333321 111110 00000 11222 233444445
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC
Q 006669 490 TRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT 569 (636)
Q Consensus 490 ~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 569 (636)
+-+|..-+..|.-||..-+- .+ ...=+++.|+-.|.+.+..++-.=..-+.-+|..-.-| -++++.+|.|.+-|..
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk-~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGK-EK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTD 667 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhh-cc-cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccC
Confidence 55666555666666632110 00 00115666777777776655543333333333322222 1244667888888888
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 570 ~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
+.+.+-..|+..|..||..+-=....+.+ .++-..-++-..+.-+|+.+..++-.+.
T Consensus 668 ~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred cchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 88888889999988888753211111111 2333334455677778888877766554
No 222
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.60 E-value=1 Score=44.85 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcCc-------HHHHHHHHc-CCCHHHHHHHHHHHHHhhccChHHHH-HHHHcCChH
Q 006669 533 MVDEALTILSVLASNPEAKIAIVKAST-------IPVLIVLLR-TGLPRNKENAAAILLSLCKRDTENLA-CISRLGAVI 603 (636)
Q Consensus 533 ~~~~Al~~L~~La~~~~~~~~i~~~g~-------i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~-~i~~~G~i~ 603 (636)
-+..|+.+|..|+-.+.|...+...+- +..|+++|. .+++-.||.|+.+|.+||..+...+. ...+.+.+.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 467899999999998888887776653 444555554 35688999999999999998887664 457889999
Q ss_pred HHHHhhhcCCHHHHHH
Q 006669 604 PLTELTKSGTERAKRK 619 (636)
Q Consensus 604 ~L~~Ll~~g~~~~k~k 619 (636)
.|+.++.+....+...
T Consensus 220 ~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998876555433
No 223
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.66 E-value=0.11 Score=38.74 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=36.9
Q ss_pred cCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 259 LCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 259 ~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
-|.||.+---|.|+-.|||- .|-.|=.+.+..++..||.|+.+..
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 49999999999999999996 6677766666668899999998653
No 224
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.63 E-value=7.8 Score=43.96 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=102.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhHHHHH---hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCC
Q 006669 360 KLSSRSVEERRAAVAEIRSLSKRSTDNRIIIA---DAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGA 436 (636)
Q Consensus 360 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~---e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~ 436 (636)
.+-.-.++.+.-|+..||.+.++...+-..+- ....+..++..+. .++..+.-++.+|.|+..++.++..++..
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~-- 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR-- 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--
Confidence 33445677888899999999887665544433 1235666666665 66778889999999999998888887764
Q ss_pred hHHHHHH---HhcC-cHHHHHHHHHHHHHccCC--CchhHHHHhcCchHHHHhhhccC-----CHHHHHHHHHHHHhhhh
Q 006669 437 IPSIVQI---LRAG-SMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLLQNG-----STRGRKDAATALFNLCI 505 (636)
Q Consensus 437 I~~Lv~l---L~~~-~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~LL~~~-----~~~~k~~A~~aL~nL~~ 505 (636)
...+... .+++ +...+...+...+|++.. ..+- +.+..+.|...+... +-+.....+.||.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 2222222 2333 344555555555555421 1111 124555555544432 33567788899999999
Q ss_pred ccchHHHHHHhchHHHHHHHhcC
Q 006669 506 YMGNKGRAVRAGIISALLKMLTD 528 (636)
Q Consensus 506 ~~~n~~~lv~~g~v~~Lv~lL~~ 528 (636)
.+.+..++...--|..+++.+++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHH
Confidence 88787777765566677776654
No 225
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.37 E-value=15 Score=40.34 Aligned_cols=186 Identities=17% Similarity=0.201 Sum_probs=111.8
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-cCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669 353 AIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL 430 (636)
Q Consensus 353 ~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~~~~~k~~ 430 (636)
.+..++....+ .++..+..+++.+..+.-.-+..- .+ ...+..+...+ ...+...+..++.++.-+++ ..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-----aL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWITK-----AL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----HH
Confidence 45666665543 346677777777777663311110 00 02223333333 23344455555555544432 23
Q ss_pred HHH-----hCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-Cc--------hhHHHHhc----CchHHHHhhhccCCHHH
Q 006669 431 IML-----AGAIPSIVQILRAGSMEARENAAATLFSLSLL-DE--------NKIIIGAS----GAIPALVDLLQNGSTRG 492 (636)
Q Consensus 431 I~~-----~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~--------~~~~i~~~----g~i~~Lv~LL~~~~~~~ 492 (636)
+++ ...+..|+++|.+ ++....|+..+.-|..+ ++ +...+.+. ..+|.|++-.+..+...
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI 339 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence 332 1234556666655 66677788888777655 22 11222222 35677777777766678
Q ss_pred HHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Q 006669 493 RKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLASNP 548 (636)
Q Consensus 493 k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 548 (636)
|.+-+.||.++..+-+....+-+ ...+|.|++-|.-++..++..++.+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88899999999876664444444 558899999998888899999999999888754
No 226
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.32 E-value=0.38 Score=35.95 Aligned_cols=45 Identities=18% Similarity=0.365 Sum_probs=24.5
Q ss_pred cccCccchhhccCCee-cCCCch--hhhHHH-HHHHcCCCCCCCCCCcc
Q 006669 257 DFLCPISLELMRDPVI-VATGQT--YERSYI-QRWIDCGNVTCPKTQQK 301 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~-~~~G~t--~~r~~I-~~w~~~~~~~cP~~~~~ 301 (636)
.+.||||.+.|+-||= ..|-|. ||-... +.....+.-.||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 4689999999999996 677665 776443 33344455679999864
No 227
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.23 E-value=0.26 Score=51.98 Aligned_cols=60 Identities=25% Similarity=0.564 Sum_probs=45.7
Q ss_pred ccCccchhhccCC-----eecCCCchhhhHHHHHHHcC-CCCCCCCCCcccccCCcccchhHHHHH
Q 006669 258 FLCPISLELMRDP-----VIVATGQTYERSYIQRWIDC-GNVTCPKTQQKLEHLTLTPNYVLRSLI 317 (636)
Q Consensus 258 f~CPis~~~m~dP-----v~~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~l~pn~~lr~lI 317 (636)
-+||||++-..=| |++.|||-|--.||++|+-. -...||.|.-.-....+.+.+++|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 5799999877544 57899999999999999931 123599997766667777877776553
No 228
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=88.18 E-value=4.3 Score=38.91 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC---------CChHHHHHHHHHHHHh
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTT---------DDVMTQEHAVTAILNL 421 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s---------~d~~~~e~Av~aL~nL 421 (636)
.....+++.+.+..... ..+..|+..-+.++ .--..+.+.||+..|+.+|.. .+...+..++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45777888887765433 45555554443333 335566778999999998852 3456788899999998
Q ss_pred hhCcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHcc
Q 006669 422 SIYENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLS 463 (636)
Q Consensus 422 s~~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 463 (636)
..+..+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 887777777776 789999999999999999999999988765
No 229
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.10 E-value=43 Score=36.31 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=74.1
Q ss_pred CCHHHHHHhhcCC---ChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHh-cC---cHHHHHHHHHHHHHccCC
Q 006669 394 GAIPVLVNLLTTD---DVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILR-AG---SMEARENAAATLFSLSLL 465 (636)
Q Consensus 394 g~i~~Lv~lL~s~---d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~-~~---~~e~~~~Aa~~L~~Ls~~ 465 (636)
.....|...+++. .+.+-..|+.++..+-. +|..-..+.++|.++.+++.+. .+ +.++...--.+|..|+.+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 3455566666653 35677888888888877 4556777888999999999888 54 677777777888889999
Q ss_pred CchhHHHHhcCchHHHHhhhccC
Q 006669 466 DENKIIIGASGAIPALVDLLQNG 488 (636)
Q Consensus 466 ~~~~~~i~~~g~i~~Lv~LL~~~ 488 (636)
......+.+.+.++.+++++.+.
T Consensus 186 ~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 186 NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHHHhcChHHHHHHHhCCH
Confidence 99999998899999999887653
No 230
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=87.88 E-value=13 Score=43.66 Aligned_cols=263 Identities=16% Similarity=0.129 Sum_probs=152.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHH
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLI 431 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I 431 (636)
++.....++....+.+..++.....++.. +...+..+.....+|.+-.+....+..++...+....+++- .+ +..-
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~t 434 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERT 434 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcC
Confidence 44455556555555555555555555432 22334444555556777777766677677666666666643 12 1100
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK 510 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~ 510 (636)
-.-.++.++..++...++++.+-...+..+-... ...........++.++++-.....+.+......+..++...+
T Consensus 435 -i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-- 511 (759)
T KOG0211|consen 435 -ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-- 511 (759)
T ss_pred -ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--
Confidence 0224566666777778888888887776554333 334455556778888888777788888888888888776543
Q ss_pred HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHH---HHHHHHHHhhc
Q 006669 511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKE---NAAAILLSLCK 587 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke---~A~~~L~~L~~ 587 (636)
..+.+.-..+.+..-+.+....+.+.|...|..++..-. .+.- ....++.++.....++-..|. .++..|..++.
T Consensus 512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 333333333333333444455677778777777765322 1111 113355555555443333333 34444444443
Q ss_pred cChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 588 RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 588 ~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
..+.....++.+..+..+..+.+|-+++..|..+.+
T Consensus 590 ------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 590 ------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred ------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 223333457777788888888888888877776644
No 231
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.40 E-value=16 Score=40.17 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=85.8
Q ss_pred chHHHHhhhccCCHHHHHHHHHHHHhhhhc-c--------ch-----HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 006669 477 AIPALVDLLQNGSTRGRKDAATALFNLCIY-M--------GN-----KGRAVRAGIISALLKMLTDSRNCMVDEALTILS 542 (636)
Q Consensus 477 ~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~-~--------~n-----~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~ 542 (636)
.+..|++++.+ +.....|+.++.-|... + .+ |+++.. -++|.|++.....+.+.+..-+.+|.
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 45667777765 55666777777766554 1 12 333333 37888888887777778888899999
Q ss_pred HHhcChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHH
Q 006669 543 VLASNPEAKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTE 607 (636)
Q Consensus 543 ~La~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~ 607 (636)
.+..+-...-.+-+ ...+|.|++-|...++..+..+..+|..+....++....-++ ..++.|++
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 88886443333333 347899999998888899999999999998877654444222 34555544
No 232
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.36 E-value=1.9 Score=40.62 Aligned_cols=143 Identities=20% Similarity=0.150 Sum_probs=90.7
Q ss_pred hHHHHHHHhc--CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHH
Q 006669 437 IPSIVQILRA--GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRA 513 (636)
Q Consensus 437 I~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~l 513 (636)
+..++.-|.. .+++++..+.-++..+- +..+.... .-.-+.+-.++..++.+....+..++..|-.... -...+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4445555543 46677777777776662 22222222 1122233334444444567777777777654443 34444
Q ss_pred -HHhchHHHHHHHhc--CCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CHH-HHHHHHHHHH
Q 006669 514 -VRAGIISALLKMLT--DSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LPR-NKENAAAILL 583 (636)
Q Consensus 514 -v~~g~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~-~ke~A~~~L~ 583 (636)
...|..+.++.++. ..+......++.+|..=|.+...|..|.+ .+++-|-++++.+ ++. .|..|+-+|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 45899999999998 67888888999999999998888888876 5688888888644 455 5666665554
No 233
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=87.30 E-value=31 Score=40.53 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=111.6
Q ss_pred HHHHccCC-CchhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHH--HHHHHhcC-CCHH
Q 006669 458 TLFSLSLL-DENKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIIS--ALLKMLTD-SRNC 532 (636)
Q Consensus 458 ~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~--~Lv~lL~~-~~~~ 532 (636)
+|+++... .+++..+.+.|++..+...++.- +......++..+.|++...+.+........+. .+-.++.. .+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45565543 45778888899999999998854 56788899999999987766544333211121 23334433 3336
Q ss_pred HHHHHHHHHHHHhcChhh------H----HHHH--------------hcCcHHH-HHHHHcC-CCHHHHHHHHHHHHHhh
Q 006669 533 MVDEALTILSVLASNPEA------K----IAIV--------------KASTIPV-LIVLLRT-GLPRNKENAAAILLSLC 586 (636)
Q Consensus 533 ~~~~Al~~L~~La~~~~~------~----~~i~--------------~~g~i~~-Lv~lL~~-~s~~~ke~A~~~L~~L~ 586 (636)
....|+++|+.+..+.+. + +.+. ....+.+ +..++.. .++.....|++++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 677889999888764221 1 1111 1112222 4445543 46788899999999999
Q ss_pred ccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHh
Q 006669 587 KRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHL 627 (636)
Q Consensus 587 ~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l 627 (636)
..+++++..+...|+++.+..+... ....++..+...+...
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 9999999999999999988877533 3555566666665544
No 234
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.26 E-value=1.1 Score=29.63 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669 518 IISALLKMLTDSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 547 (636)
++|.+++++.|+++.++..|+.+|..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 235
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.20 E-value=9.7 Score=45.26 Aligned_cols=254 Identities=19% Similarity=0.249 Sum_probs=151.5
Q ss_pred HHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCc----
Q 006669 373 VAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGS---- 448 (636)
Q Consensus 373 l~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~---- 448 (636)
..+|-.+-|.+.+|...+.++.++..++.++-++ +-+...+.++..|-..+..+ +...-+-.+|..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 4567778889999999999999888888888432 22333344444443321110 01122445677777641
Q ss_pred --------HHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhcc----------CCHHHHHHHHHHHHhh-----h
Q 006669 449 --------MEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQN----------GSTRGRKDAATALFNL-----C 504 (636)
Q Consensus 449 --------~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~----------~~~~~k~~A~~aL~nL-----~ 504 (636)
.........+++.+... ...+...++++++..|...|.. ++..+...-...|+.+ |
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 12344556677766544 3456777888888888776642 1222222233344332 4
Q ss_pred hccchHHHHH-------------Hhc---------hHHHHHHHh-cC-CCHHHHH--HHHHHHHHHhc------Chh---
Q 006669 505 IYMGNKGRAV-------------RAG---------IISALLKML-TD-SRNCMVD--EALTILSVLAS------NPE--- 549 (636)
Q Consensus 505 ~~~~n~~~lv-------------~~g---------~v~~Lv~lL-~~-~~~~~~~--~Al~~L~~La~------~~~--- 549 (636)
.++.|+.++- +.| .|..|.++- .. .++.+.. .|+.-+-.+-. .|.
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 4455654432 222 222222221 11 1222221 22222222211 122
Q ss_pred --hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhh---hcCCHHHHHHHHHHH
Q 006669 550 --AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELT---KSGTERAKRKATSLL 624 (636)
Q Consensus 550 --~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll---~~g~~~~k~kA~~lL 624 (636)
..+.|..+|++..|+..+-...|+.+-.-...|-.+.+.++.+....-..|.++.|++++ .+|+...--.|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 356788899999999988778898888889999999999998888888899999999886 357777777777777
Q ss_pred HHhhccc
Q 006669 625 EHLRKLP 631 (636)
Q Consensus 625 ~~l~~~~ 631 (636)
.+|+-++
T Consensus 978 emLgayr 984 (2799)
T KOG1788|consen 978 EMLGAYR 984 (2799)
T ss_pred HHHhhcc
Confidence 7776543
No 236
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=0.42 Score=50.54 Aligned_cols=49 Identities=14% Similarity=0.393 Sum_probs=40.7
Q ss_pred CCcccCccchhhccCCe-----e---cCCCchhhhHHHHHHHcCCC------CCCCCCCcccc
Q 006669 255 PADFLCPISLELMRDPV-----I---VATGQTYERSYIQRWIDCGN------VTCPKTQQKLE 303 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv-----~---~~~G~t~~r~~I~~w~~~~~------~~cP~~~~~l~ 303 (636)
-.++.|=||++...+++ . .+|.|+||-.||.+|-.... +.||.|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46899999999999988 5 67999999999999974332 56999987653
No 237
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=0.44 Score=52.95 Aligned_cols=40 Identities=30% Similarity=0.529 Sum_probs=33.4
Q ss_pred CCCcccCccchhhc----cCCeecCCCchhhhHHHHHHHcCCCCCCC
Q 006669 254 IPADFLCPISLELM----RDPVIVATGQTYERSYIQRWIDCGNVTCP 296 (636)
Q Consensus 254 ~p~~f~CPis~~~m----~dPv~~~~G~t~~r~~I~~w~~~~~~~cP 296 (636)
..+-++|+||...+ ..||.+-||||.||.|.+.-+. .+||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 34557899998777 6799999999999999998774 5677
No 238
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=86.92 E-value=28 Score=37.51 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CChHHHHHHHHHHHHhhh-CcchHHH-HHHhCChH
Q 006669 366 VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----DDVMTQEHAVTAILNLSI-YENNKGL-IMLAGAIP 438 (636)
Q Consensus 366 ~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----~d~~~~e~Av~aL~nLs~-~~~~k~~-I~~~G~I~ 438 (636)
.++..+|+++|.++..++...|....+......+++.+.. ....++..=+..|.-|+. ....+.. +.+.++++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 4677789999999999999999998888766666665532 112233344455554444 3444544 55689999
Q ss_pred HHHHHHhcC---------c------HHHHHHHHHHHHHccCCC
Q 006669 439 SIVQILRAG---------S------MEARENAAATLFSLSLLD 466 (636)
Q Consensus 439 ~Lv~lL~~~---------~------~e~~~~Aa~~L~~Ls~~~ 466 (636)
.+...|.+. + ......+..++||+..+.
T Consensus 191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 999998531 1 123456778899987654
No 239
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=86.64 E-value=21 Score=43.34 Aligned_cols=225 Identities=16% Similarity=0.219 Sum_probs=125.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHh---cc-ChhhHHHHHhcCCHHHHHHhhcCCCh-HHHHHHHHHHHHhhh----
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLS---KR-STDNRIIIADAGAIPVLVNLLTTDDV-MTQEHAVTAILNLSI---- 423 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La---~~-~~~~r~~i~e~g~i~~Lv~lL~s~d~-~~~e~Av~aL~nLs~---- 423 (636)
.+|.++.++..+..++|..|+..|..+- +. .+.+-..+.| =..|.|-.++...++ .++..-+..|..|++
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 5778888888889999999988877643 22 2222222222 235566666654232 233222333333332
Q ss_pred --------------CcchH-HHHH----------HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc---
Q 006669 424 --------------YENNK-GLIM----------LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS--- 475 (636)
Q Consensus 424 --------------~~~~k-~~I~----------~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--- 475 (636)
++.+- .... ..++=..++.+|....+-++..-+..|.-|+ ...++.
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ksN 615 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKSN 615 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhcccc
Confidence 11010 0000 0011112223333333444443333333332 223332
Q ss_pred -CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Q 006669 476 -GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAI 554 (636)
Q Consensus 476 -g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i 554 (636)
-.++.|+..|.+.++..+..-...|..+|.+-+- +-++.+.+|.|.+-|.+..+.+...|+.+|..|+...--+...
T Consensus 616 D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~ 693 (1431)
T KOG1240|consen 616 DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA 693 (1431)
T ss_pred cchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH
Confidence 3577788888887776665544455544443322 2356778999999999999999999999999999854433221
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 555 VKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 555 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
+- ..+....-+|-..+..+|..++.++.....
T Consensus 694 v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 694 VK-DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HH-HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 11 233344445667888999999999987654
No 240
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.30 E-value=14 Score=42.89 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=96.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhc
Q 006669 438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAG 517 (636)
Q Consensus 438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g 517 (636)
.-|..+|.+.....+..|..-+..+-...++ -...+|..|..+.+.+.++|+..-..|..-+-.+++-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence 3456677766555555566554444333322 1246788888888888888886655554444433332222
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHH
Q 006669 518 IISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACIS 597 (636)
Q Consensus 518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~ 597 (636)
-|..+-+-|.++++.++.-|+.+|..+-. -++..-.+..+-+.....++.+|..|+-++-.|-+-+++....+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL- 181 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL- 181 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-
Confidence 35566677888888888888887764422 11111112223334445667777777777777766666554433
Q ss_pred HcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 598 RLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 598 ~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
++.+-.|+.+.++.+--.|..+-..+
T Consensus 182 ----~e~I~~LLaD~splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 182 ----EEVIKKLLADRSPLVVGSAVMAFEEV 207 (968)
T ss_pred ----HHHHHHHhcCCCCcchhHHHHHHHHh
Confidence 33444555555555555555554433
No 241
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.26 E-value=14 Score=41.71 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
.++..++.+....+..+|..|++.|-.+++++++.-..++ ..|+.+|.++++.....+=.+|..|...+.
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~----- 128 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDP----- 128 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-H-----
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCc-----
Confidence 4788999999999999999999999999999888877775 589999998887666555556655544211
Q ss_pred HHhCChHHHHHHHh---cCcHHHHHHHHHHHH
Q 006669 432 MLAGAIPSIVQILR---AGSMEARENAAATLF 460 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~---~~~~e~~~~Aa~~L~ 460 (636)
.+.+..+...+. +++..+|+.+...|.
T Consensus 129 --k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 129 --KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 233444444443 567778888887774
No 242
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=0.35 Score=50.61 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=42.9
Q ss_pred cccCccchhhccC---CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669 257 DFLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT 306 (636)
Q Consensus 257 ~f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 306 (636)
-+.|-||++.|.| |++.|+|++|--.+|.+|-..++-.||.++..+..+.
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 3789999999966 9999999999999999998765688999988776543
No 243
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.05 E-value=2 Score=42.93 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHhc-------hHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhh--HHHHHhcCc
Q 006669 490 TRGRKDAATALFNLCIYMGNKGRAVRAG-------IISALLKMLTD-SRNCMVDEALTILSVLASNPEA--KIAIVKAST 559 (636)
Q Consensus 490 ~~~k~~A~~aL~nL~~~~~n~~~lv~~g-------~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~--~~~i~~~g~ 559 (636)
-.-+..|+.+|..||..+.|-.-++..+ .+..|++++.. ++.-.+|-|+.+|.+||...+. +....+.++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3468899999999999888866555433 66777888755 7888999999999999996554 344456789
Q ss_pred HHHHHHHHcCC
Q 006669 560 IPVLIVLLRTG 570 (636)
Q Consensus 560 i~~Lv~lL~~~ 570 (636)
|..|+.++...
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 244
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=86.03 E-value=30 Score=38.84 Aligned_cols=227 Identities=12% Similarity=0.060 Sum_probs=136.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-----------c
Q 006669 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-----------E 425 (636)
Q Consensus 357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-----------~ 425 (636)
..+...+.+.+.|..|..++..+..-....-..+.|.-......+.+++.+.++...|+..-..++.. +
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p 305 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 34445567788888888888876543333344555655566677788888877776666544333321 1
Q ss_pred ----chHH--HHHHhCChHHHHHHHhcC-------cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHH
Q 006669 426 ----NNKG--LIMLAGAIPSIVQILRAG-------SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRG 492 (636)
Q Consensus 426 ----~~k~--~I~~~G~I~~Lv~lL~~~-------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~ 492 (636)
.|.. .-.-+..+|.|+.+|... ++.....|..+|--.+.... ..|.+. .+..+-.-+++.+...
T Consensus 306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~~p-Vl~FvEqni~~~~w~n 382 (858)
T COG5215 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIMRP-VLGFVEQNIRSESWAN 382 (858)
T ss_pred cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhHHH-HHHHHHHhccCchhhh
Confidence 0000 111234788999998652 35566666666665544322 223332 2222223456678889
Q ss_pred HHHHHHHHHhhhhccc--hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh-cCcHHHHHHH-Hc
Q 006669 493 RKDAATALFNLCIYMG--NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK-ASTIPVLIVL-LR 568 (636)
Q Consensus 493 k~~A~~aL~nL~~~~~--n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~l-L~ 568 (636)
++.|+.|+......+. .+..++ ..++|.+..++.+..--+++.+.+++..++.+- ..+++ .|-++..+.- +.
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~li 458 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLI 458 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHh
Confidence 9999999988754331 233334 468999999998877778888999999988742 12222 2333333321 21
Q ss_pred --CCCHHHHHHHHHHHHHhhccCh
Q 006669 569 --TGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 569 --~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
..+|....++.+...++..+-+
T Consensus 459 Gl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 459 GLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred hhhccchHHhhhHHHHHhHHHhhh
Confidence 2457777788888888776543
No 245
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.96 E-value=11 Score=42.64 Aligned_cols=130 Identities=24% Similarity=0.319 Sum_probs=82.5
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHh
Q 006669 478 IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVK 556 (636)
Q Consensus 478 i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~ 556 (636)
...++...+ |+...|+.|+..|.....+-+.- +..++.+++++..+.+..++..|+..|-.+|.+ ++....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 344444444 67889999998887765544332 233677899999999999999999999999985 4555554
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHHHH
Q 006669 557 ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK---SGTERAKRKATSLLE 625 (636)
Q Consensus 557 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~---~g~~~~k~kA~~lL~ 625 (636)
+..|+++|.+.++.....+-.+|..|...++.. .+..|...+. ++++.+|+++...|+
T Consensus 98 ---aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ---ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 458888998887777777777777777655432 3344444443 678888888776664
No 246
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.93 E-value=0.25 Score=55.96 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=41.4
Q ss_pred cccCccchhhccCCee---cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669 257 DFLCPISLELMRDPVI---VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL 307 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~---~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 307 (636)
.=.||+|..-+.|-.+ .+|+|-||-.||..|.. ...+||+++..+....+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheeee
Confidence 4579999999988655 68999999999999997 46899999987765443
No 247
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=85.65 E-value=0.7 Score=34.08 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=21.6
Q ss_pred Cccchhhc--cCCeec--CCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669 260 CPISLELM--RDPVIV--ATGQTYERSYIQRWIDCGNVTCPKTQQKL 302 (636)
Q Consensus 260 CPis~~~m--~dPv~~--~~G~t~~r~~I~~w~~~~~~~cP~~~~~l 302 (636)
||+|.+.| +|-.+. +||..++|-|..+-...++..||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888 443344 56888999987776666678999999865
No 248
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.61 E-value=57 Score=37.84 Aligned_cols=127 Identities=19% Similarity=0.146 Sum_probs=81.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhh-hccCCHHHHHHHHHHHHhhhhccchHHHHHHh
Q 006669 438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDL-LQNGSTRGRKDAATALFNLCIYMGNKGRAVRA 516 (636)
Q Consensus 438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~L-L~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~ 516 (636)
+.+-+++.+.++-.|...+-++..- ... -++.++|..|++. +.+++.+++..|..+|.-.+..+++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alA-y~G-----Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------- 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALA-YVG-----TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------- 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHH-Hhc-----cCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-------
Confidence 3444455555666666555444321 111 1334678888888 6678999999999999988766543
Q ss_pred chHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669 517 GIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584 (636)
Q Consensus 517 g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 584 (636)
.++..|++|+. -++.++--|+.+|..-|.....+++|- .+.+ +......-+|+.|+-++..
T Consensus 589 -~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~---lLep---l~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 589 -QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN---LLEP---LTSDPVDFVRQGALIALAM 650 (929)
T ss_pred -hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH---HHhh---hhcChHHHHHHHHHHHHHH
Confidence 45666778865 678888888889998888766666542 1222 3334445667777655544
No 249
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.52 E-value=0.54 Score=47.97 Aligned_cols=43 Identities=28% Similarity=0.592 Sum_probs=35.8
Q ss_pred cccCccchhhccC---CeecCCCchhhhHHHHHHHcCCC--CCCCCCC
Q 006669 257 DFLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGN--VTCPKTQ 299 (636)
Q Consensus 257 ~f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~--~~cP~~~ 299 (636)
-|.||+..+.-+| |+++.|||..-..+...--.+|. +.||-|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3899999999977 99999999999999888776664 4488773
No 250
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.23 E-value=0.51 Score=49.50 Aligned_cols=53 Identities=26% Similarity=0.400 Sum_probs=47.0
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN 310 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 310 (636)
.-.|.+++..+.|||-...|..|+-..|--|+.. +.+-|++++++...++++.
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKL 92 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceee
Confidence 3579999999999999999999999999999974 5678999999988888764
No 251
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=84.98 E-value=1.1 Score=33.28 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=30.4
Q ss_pred Cccchh--hccCCeecCCC-----chhhhHHHHHHHcC-CCCCCCCCC
Q 006669 260 CPISLE--LMRDPVIVATG-----QTYERSYIQRWIDC-GNVTCPKTQ 299 (636)
Q Consensus 260 CPis~~--~m~dPv~~~~G-----~t~~r~~I~~w~~~-~~~~cP~~~ 299 (636)
|-||++ --.+|.+.||. +.+=+.|+.+|+.. +..+||+|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 677775 33678888874 67999999999974 456899874
No 252
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=84.09 E-value=50 Score=34.48 Aligned_cols=198 Identities=14% Similarity=0.157 Sum_probs=137.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CC-HHHHHHhhcC-CC-hHHHHHHHHHHHHhhhCcch
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GA-IPVLVNLLTT-DD-VMTQEHAVTAILNLSIYENN 427 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~-i~~Lv~lL~s-~d-~~~~e~Av~aL~nLs~~~~~ 427 (636)
+....|++.+...+.+.+..++....++-+.....|...++. .. ...+-.++.. .+ +++--++-..|..-..++..
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~L 158 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFL 158 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 346667777777778888888777777765555555444432 11 2222233332 22 44444455556666667777
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch-hHHH-Hhc--CchHH-HHhhhccCCHHHHHHHHHHHHh
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIII-GAS--GAIPA-LVDLLQNGSTRGRKDAATALFN 502 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i-~~~--g~i~~-Lv~LL~~~~~~~k~~A~~aL~n 502 (636)
.+.|.++.-.......+..++-++...|..+...+-..+.. ...+ ... ..++. --.++++++.-++..+..+|..
T Consensus 159 akiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ 238 (342)
T KOG1566|consen 159 AKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGE 238 (342)
T ss_pred HHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHH
Confidence 88888888888888888888888888888888887544432 2222 222 22233 5567888999999999999999
Q ss_pred hhhccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669 503 LCIYMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPE 549 (636)
Q Consensus 503 L~~~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~ 549 (636)
+-...+|...+.. ...+..++.+|++.+..++-+|..+.+....+|.
T Consensus 239 llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 239 LLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 9998888776654 4688899999999999999999999998888654
No 253
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=84.07 E-value=14 Score=43.42 Aligned_cols=186 Identities=18% Similarity=0.235 Sum_probs=122.6
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 354 IEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 354 i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
+..+.+.+.. .++.++..++.-+.++++.-.. .....+.++.+..+...+...+++.|+..+.++...-....- .
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~ 313 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-V 313 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-h
Confidence 4445555543 4566777777778777764332 555567888899988877778999999888887652111101 1
Q ss_pred HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc--cchH
Q 006669 433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY--MGNK 510 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~--~~n~ 510 (636)
..-..+.++.....+++..+...+.....|+..=+- ..+....+++...+++....+++..++.-...++.+ .+.+
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 133567788888888888888888887777532111 233335677788888876666776666655555543 3445
Q ss_pred HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 006669 511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La 545 (636)
..+....++|.+-.+..+.+..+....+.....++
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~ 426 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLS 426 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccC
Confidence 66666667888888888888777777766666654
No 254
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.97 E-value=0.69 Score=47.57 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=35.4
Q ss_pred Cccchhhc--cCCee--cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669 260 CPISLELM--RDPVI--VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL 307 (636)
Q Consensus 260 CPis~~~m--~dPv~--~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 307 (636)
||+|++.| +|--+ -+||...||-|....-..-+..||.|+....+..+
T Consensus 17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 99999999 55444 46788888888554444446789999998877554
No 255
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.71 E-value=0.34 Score=48.35 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=42.6
Q ss_pred CcccCccchhhccCCe----------ecCCCchhhhHHHHHHHcCC-CCCCCCCCcccccCCccc
Q 006669 256 ADFLCPISLELMRDPV----------IVATGQTYERSYIQRWIDCG-NVTCPKTQQKLEHLTLTP 309 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv----------~~~~G~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~~l~p 309 (636)
++=.|.+|++-+.+.| .++|||.|---||..|+--| ..|||-|++..+...+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhcc
Confidence 4557999988876655 68999999999999999766 468999988776544433
No 256
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.66 E-value=1.9 Score=28.47 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 560 IPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 560 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
+|.+++++.+.++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999998875
No 257
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.50 E-value=2.3 Score=46.28 Aligned_cols=177 Identities=18% Similarity=0.100 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhhhCcchHHHH-HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-----Cc---hhHHHHhcCchHH
Q 006669 410 TQEHAVTAILNLSIYENNKGLI-MLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-----DE---NKIIIGASGAIPA 480 (636)
Q Consensus 410 ~~e~Av~aL~nLs~~~~~k~~I-~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-----~~---~~~~i~~~g~i~~ 480 (636)
+...|+.++.-+..++..+... .-..+...+...|.+..-..++.+++++.|++.. +. ....+.. -.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence 3455666666666666654433 3456677777777776778899999999998531 11 1111110 11222
Q ss_pred HHhhhc---cCCHHHHHHHHHHHHhhhhccc----hHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHH
Q 006669 481 LVDLLQ---NGSTRGRKDAATALFNLCIYMG----NKGRAVRAGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKI 552 (636)
Q Consensus 481 Lv~LL~---~~~~~~k~~A~~aL~nL~~~~~----n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~ 552 (636)
++..-. -...+++.+|..+|.|+...-. ---..+..|.+..+..-. ......++.+|+.++.||-+++...-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 222211 1256889999999999864321 111122233333333332 23577889999999999999876522
Q ss_pred H-H-HhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhc
Q 006669 553 A-I-VKASTIPVLIVLLRT-GLPRNKENAAAILLSLCK 587 (636)
Q Consensus 553 ~-i-~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~ 587 (636)
. + ....+++.|..++.+ .+-++|-+|+++|..-..
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 2 1 223457888888875 567888888888875554
No 258
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=83.05 E-value=65 Score=36.34 Aligned_cols=112 Identities=19% Similarity=0.146 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch
Q 006669 352 VAIEALVRKLSSRS----VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN 427 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~----~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~ 427 (636)
-+.-.|++.+.+.. .-....-++.+..+.+.++..+..+ .|.|-.-|++.-..++-+++.++..++...-
T Consensus 223 ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv- 296 (898)
T COG5240 223 MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV- 296 (898)
T ss_pred HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-
Confidence 34556666665543 1112223445555666666555443 3555556665556677778887777765210
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI 470 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 470 (636)
-.... ...+..|-.+|++.....|-.|.++|-.|+.....+.
T Consensus 297 ~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 297 GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 11111 1245666667778888889999999999987654433
No 259
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.93 E-value=83 Score=36.81 Aligned_cols=69 Identities=22% Similarity=0.206 Sum_probs=48.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc
Q 006669 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE 467 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~ 467 (636)
..+.+=++|++....+..+|..++.+|... +-..+. -++..|-.++.+...-.|-.|.++|..++....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 345555667777888888888888888641 111111 156666677778888899999999999987654
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=82.75 E-value=52 Score=38.96 Aligned_cols=225 Identities=18% Similarity=0.141 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHH--HhCChHHH
Q 006669 364 RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIM--LAGAIPSI 440 (636)
Q Consensus 364 ~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~--~~G~I~~L 440 (636)
..+....+|...+...+.....+...+.. .....++.+.- ..+.++..|+.++.-.++. ..+. ..+.+..|
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDGL 535 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHHHH
Confidence 34555556666666555543333322211 12333444433 3344556666665554421 1111 24556666
Q ss_pred HHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc--cCCHHHHHHHHHHHHhhhhccchHHHHHHhch
Q 006669 441 VQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ--NGSTRGRKDAATALFNLCIYMGNKGRAVRAGI 518 (636)
Q Consensus 441 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~--~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~ 518 (636)
..+....+.++..--..+|......+.......++-..|..+.+.- +.+|.+...+-..+..|+....|...+.+ -.
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HH
Confidence 6666556677777777788877666554444455556666666543 34566777777777777765555544444 37
Q ss_pred HHHHHHHhcCCC----HHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHH-HcCCCHHHHHHHHHHHHHhhccChHH
Q 006669 519 ISALLKMLTDSR----NCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVL-LRTGLPRNKENAAAILLSLCKRDTEN 592 (636)
Q Consensus 519 v~~Lv~lL~~~~----~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~l-L~~~s~~~ke~A~~~L~~L~~~~~~~ 592 (636)
+|.++..|..+. .++...|+.+|..+..+ |.-.....-.-++|.+.+. +++++..+-+++-.+|..+...+.+.
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 999999996644 77888889999877663 2222222222456777664 56677888889999999888776654
Q ss_pred HHH
Q 006669 593 LAC 595 (636)
Q Consensus 593 ~~~ 595 (636)
...
T Consensus 695 ~~t 697 (1005)
T KOG2274|consen 695 LLT 697 (1005)
T ss_pred HHh
Confidence 443
No 261
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.74 E-value=13 Score=36.81 Aligned_cols=146 Identities=12% Similarity=0.073 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhc---C--cHHHHHHHHHHHHHccCCCc-hh-HHHHhcCchHHHHh
Q 006669 411 QEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRA---G--SMEARENAAATLFSLSLLDE-NK-IIIGASGAIPALVD 483 (636)
Q Consensus 411 ~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~---~--~~e~~~~Aa~~L~~Ls~~~~-~~-~~i~~~g~i~~Lv~ 483 (636)
.-+|+.+|--++.+++.|..+.++..--.+-..|.. . -.-.|..+.+++..|..+++ +. ..+.....+|-++.
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 456777777788899999888876543334444432 2 24567889999999987764 33 33445589999999
Q ss_pred hhccCCHHHHHHHHHHHHhhhhccchHHHHHH--------hchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHHHH
Q 006669 484 LLQNGSTRGRKDAATALFNLCIYMGNKGRAVR--------AGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAI 554 (636)
Q Consensus 484 LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~--------~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i 554 (636)
++..|+.-.+.-|+..+..+..++.+-+.+.+ ..++..++.-+ +.++..+...++.+-..||..|..|..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 99999988888888887777666655433322 12333333333 3477888899999999999999988876
Q ss_pred Hh
Q 006669 555 VK 556 (636)
Q Consensus 555 ~~ 556 (636)
..
T Consensus 277 ~~ 278 (315)
T COG5209 277 SS 278 (315)
T ss_pred hc
Confidence 43
No 262
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=82.54 E-value=0.79 Score=44.91 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=41.5
Q ss_pred cccCccchhhccCCee-cCCCchhhhHHHHHHHcC-CCCCCC--CCCcccccCCcccc
Q 006669 257 DFLCPISLELMRDPVI-VATGQTYERSYIQRWIDC-GNVTCP--KTQQKLEHLTLTPN 310 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~-~~~~cP--~~~~~l~~~~l~pn 310 (636)
+.+||||.+..--|.+ ..|+|.|+|..|+++... ....|| .|.+......++..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d 246 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCD 246 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhh
Confidence 4699999999999987 689999999999999873 234588 46666655555543
No 263
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.32 E-value=0.92 Score=47.69 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=35.6
Q ss_pred CcccCccchhhc---cCCe-ecCCCchhhhHHHHHHHcCCC--CCCCCCCcccccCCc
Q 006669 256 ADFLCPISLELM---RDPV-IVATGQTYERSYIQRWIDCGN--VTCPKTQQKLEHLTL 307 (636)
Q Consensus 256 ~~f~CPis~~~m---~dPv-~~~~G~t~~r~~I~~w~~~~~--~~cP~~~~~l~~~~l 307 (636)
-.-.|.||-+.. +|-- +-.|||+|.--|.++||.... .+||+|+..++....
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 344688886654 2211 234999999999999997432 579999955554443
No 264
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=82.30 E-value=0.72 Score=48.50 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=40.5
Q ss_pred cCccchhhccCCeecCCCchhhhHHHHHHHcC-CCCCCCCCCcccccCC
Q 006669 259 LCPISLELMRDPVIVATGQTYERSYIQRWIDC-GNVTCPKTQQKLEHLT 306 (636)
Q Consensus 259 ~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~ 306 (636)
+|-||-+==+|--+=||||-.|-.|+..|.++ ++.+||.|+-.+..+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 69999988888888899999999999999964 4789999987665433
No 265
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=80.68 E-value=0.48 Score=54.79 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=39.5
Q ss_pred ccCccchhhccCCeecCCCchhhhHHHHHHHcC-CCCCCCCCCcccccCC
Q 006669 258 FLCPISLELMRDPVIVATGQTYERSYIQRWIDC-GNVTCPKTQQKLEHLT 306 (636)
Q Consensus 258 f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~ 306 (636)
+.|++|.+ ..+||+++|||-+|+.|+.+-++. +...||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 889999999999999999888763 3346999877665433
No 266
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.49 E-value=8 Score=36.33 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=85.7
Q ss_pred HHHHHHhhc--CCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHH
Q 006669 396 IPVLVNLLT--TDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIII 472 (636)
Q Consensus 396 i~~Lv~lL~--s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i 472 (636)
+..++..|. ...++++-.+.-++..+- +..+....+ -+-..+-..+..++.+....+..++..|-... +-...+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 344555554 345667777777776663 222332222 11223333444445556677777777775443 334444
Q ss_pred H-hcCchHHHHhhhc--cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC-CCHH-HHHHHHHHHHH
Q 006669 473 G-ASGAIPALVDLLQ--NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNC-MVDEALTILSV 543 (636)
Q Consensus 473 ~-~~g~i~~Lv~LL~--~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~-~~~~Al~~L~~ 543 (636)
. ..|.++.++.++. ..+......++.+|..=|. ++++...+...+++.|-++++. .++. ++..|+-+|..
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 4 4599999999998 5567777777777766554 5566666666679999999954 4454 56666666543
No 267
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=79.53 E-value=89 Score=33.11 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=110.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhh-Cc-chHHHHHH--hCChHHHHHHHhcC----c---------HHHHHHHHHH
Q 006669 396 IPVLVNLLTTDDVMTQEHAVTAILNLSI-YE-NNKGLIML--AGAIPSIVQILRAG----S---------MEARENAAAT 458 (636)
Q Consensus 396 i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~-~~k~~I~~--~G~I~~Lv~lL~~~----~---------~e~~~~Aa~~ 458 (636)
++.+-+.|++........++..|.++.. +. .....+.. .--.+.+.+++... . +.+|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888988888888899999999987 33 33444443 22345556665311 1 2778888887
Q ss_pred HHHccCC--CchhHHHHhc-CchHHHHhhhccCCHHHHHHHHHHHHh-hhhcc----chHHHHHHhchHHHHHHHhcCCC
Q 006669 459 LFSLSLL--DENKIIIGAS-GAIPALVDLLQNGSTRGRKDAATALFN-LCIYM----GNKGRAVRAGIISALLKMLTDSR 530 (636)
Q Consensus 459 L~~Ls~~--~~~~~~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~n-L~~~~----~n~~~lv~~g~v~~Lv~lL~~~~ 530 (636)
+..+... ...+..+... +.+..+..-|...++.+....+.+|.. +..+. ..|..+....++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 7776443 3355555555 789999999998889999999998885 43332 23666777789999999776655
Q ss_pred H----HHHHHHHHHHHHHhcChhh
Q 006669 531 N----CMVDEALTILSVLASNPEA 550 (636)
Q Consensus 531 ~----~~~~~Al~~L~~La~~~~~ 550 (636)
+ .+.+.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 5 8889999999999986653
No 268
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.38 E-value=1.1 Score=52.00 Aligned_cols=44 Identities=14% Similarity=0.523 Sum_probs=32.4
Q ss_pred cCccchhhcc--CCee-----cCCCchhhhHHHHHHHcC-CCCCCCCCCccc
Q 006669 259 LCPISLELMR--DPVI-----VATGQTYERSYIQRWIDC-GNVTCPKTQQKL 302 (636)
Q Consensus 259 ~CPis~~~m~--dPv~-----~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~l 302 (636)
-||||.-++. |--+ ..|-|.|--+|+-+||.. |+.+||.||..+
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 6999988874 3211 235567888999999974 678899998654
No 269
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=79.37 E-value=52 Score=38.75 Aligned_cols=192 Identities=15% Similarity=0.108 Sum_probs=118.0
Q ss_pred HHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHHHhCChH--HHHHHHhcCc-HH
Q 006669 375 EIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIP--SIVQILRAGS-ME 450 (636)
Q Consensus 375 ~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~--~Lv~lL~~~~-~e 450 (636)
.|+....+++++...+.+.|++..+..++.. ...+.+..++..+.|++...+++...+....+. .+-..+...+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 8889999999999999999999999999986 456788999999999998666655554433333 2223444444 47
Q ss_pred HHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHH-HHHHhc-C
Q 006669 451 ARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISA-LLKMLT-D 528 (636)
Q Consensus 451 ~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~-Lv~lL~-~ 528 (636)
.-.+|+.+|..+..+.+. ....+.- ..+......++... .....+.+-...+.+ +..++. +
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r-----------~~~~~~l~e~i~~~---~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFR-----------NSVNELLVEAISRW---LTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccch-----------HHHHHHHHHHhhcc---CccceeehhhhhcchhHHHHhccc
Confidence 788888888887665443 1111111 11122222222222 112222222222222 444443 3
Q ss_pred CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHH
Q 006669 529 SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAILL 583 (636)
Q Consensus 529 ~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~ 583 (636)
..++..--|++++.++.. ++++...+...|+++.+...-.. .....++.+..++-
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 566777788889988887 56677777778888887664432 23455555555543
No 270
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.06 E-value=74 Score=31.91 Aligned_cols=137 Identities=19% Similarity=0.194 Sum_probs=83.0
Q ss_pred HHHHHH-hhcCCChHHHHHHHHHHHHhhhCc-chHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH
Q 006669 396 IPVLVN-LLTTDDVMTQEHAVTAILNLSIYE-NNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG 473 (636)
Q Consensus 396 i~~Lv~-lL~s~d~~~~e~Av~aL~nLs~~~-~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~ 473 (636)
++.|+. +-+..+++.+...+.+|..++.++ .+...+ +..|..+...+..+...-+.+.+..+-..++ +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 344444 334577889999999999999876 333322 3444445555556554445555555532221 111
Q ss_pred hcCchHHHHhh--hc------cC--CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHH
Q 006669 474 ASGAIPALVDL--LQ------NG--STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKML-TDSRNCMVDEALTILS 542 (636)
Q Consensus 474 ~~g~i~~Lv~L--L~------~~--~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~Al~~L~ 542 (636)
+.+..++.. ++ ++ ..+.....+.++..+|...+++ -...++.+...| .+.++.....++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333433333 11 11 2344555567888888877772 234678888888 6788888899999999
Q ss_pred HHhc
Q 006669 543 VLAS 546 (636)
Q Consensus 543 ~La~ 546 (636)
.||.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 9993
No 271
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=78.60 E-value=36 Score=40.51 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=108.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcC---CHHHHHHhhc-CCChHHHHHHHHHHHHhhh-CcchHHH
Q 006669 356 ALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG---AIPVLVNLLT-TDDVMTQEHAVTAILNLSI-YENNKGL 430 (636)
Q Consensus 356 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g---~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~-~~~~k~~ 430 (636)
.+-..+.+.++..+.+|+..+.....+.. .....+ .+..++.... ..+..+.-.|+..|..++. ....-.
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~- 331 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR- 331 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH-
Confidence 45556678899999999999888775432 122223 3333333332 2344555666777777765 111111
Q ss_pred HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh-cc-c
Q 006669 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI-YM-G 508 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~-~~-~ 508 (636)
=...+..+.+++-+..--.+++..+..++-...... .....++.+.+.++++++..+......+..... .. .
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 112456788888887665555554444443332210 112456777888999999988886666654432 22 2
Q ss_pred hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
....-.-.+.++.++....|.+..++..|..+++.+-.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 22222335688889999989999999998888776654
No 272
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=78.55 E-value=32 Score=40.93 Aligned_cols=179 Identities=14% Similarity=0.142 Sum_probs=110.6
Q ss_pred HhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhh-hccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHH
Q 006669 444 LRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDL-LQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISAL 522 (636)
Q Consensus 444 L~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~L-L~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~L 522 (636)
+-+..+.-+..|+.-+................|.+-.++.. +.+.+..+...|+..|..++..-..-.+=...++.+.+
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~l 341 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSL 341 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchH
Confidence 33455666666665555443322200111111333344433 23456777788888887776533222222335688899
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCC
Q 006669 523 LKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGA 601 (636)
Q Consensus 523 v~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~ 601 (636)
++-+.+....+++.++.++-..+... .-....+.+...+.+++|..+..+...+.......+ ..+..---.++
T Consensus 342 ld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l 415 (815)
T KOG1820|consen 342 LDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL 415 (815)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence 99998888899999888887766611 112346677788899999999988777765554433 22222233456
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 602 VIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 602 i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
++.++....+.+..+|..|..++--+.
T Consensus 416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 416 VPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 888888888888899988887766553
No 273
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=78.45 E-value=0.61 Score=37.54 Aligned_cols=47 Identities=19% Similarity=0.483 Sum_probs=22.3
Q ss_pred cccCccchhhcc-C---Ceec----CCCchhhhHHHHHHHcC--CC--------CCCCCCCcccc
Q 006669 257 DFLCPISLELMR-D---PVIV----ATGQTYERSYIQRWIDC--GN--------VTCPKTQQKLE 303 (636)
Q Consensus 257 ~f~CPis~~~m~-d---Pv~~----~~G~t~~r~~I~~w~~~--~~--------~~cP~~~~~l~ 303 (636)
+..|+||.+... + |+++ .||++|=..|+.+||.. +. .+||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999988764 2 5543 57889999999999952 11 24999987764
No 274
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=78.22 E-value=1.7e+02 Score=35.61 Aligned_cols=216 Identities=17% Similarity=0.171 Sum_probs=123.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGL 430 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~ 430 (636)
..++.|+..|+..+..++..|++.+..++...| . .+++ .+|...+.++.- ++...--.|+.+|..|+...-....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 356677788888899999999999999998776 2 2332 245556665543 2344555788888888752110000
Q ss_pred HHHhCChHHHHHHHh----cC----cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHh-----hhccCCHHHHHHHH
Q 006669 431 IMLAGAIPSIVQILR----AG----SMEARENAAATLFSLSLLDENKIIIGASGAIPALVD-----LLQNGSTRGRKDAA 497 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~----~~----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-----LL~~~~~~~k~~A~ 497 (636)
.. ...+|.++.-|. .| ...+|..|+.+++.++...+.... + +.+..|.. .+=+.....+..|.
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l--~-p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL--K-PVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh--h-HHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 00 123344444342 11 245788888888888654332100 0 12222221 12233556777788
Q ss_pred HHHHhhhhccchH--------------------------HHHHH-hchHHHHHHHh-----cCCCHHHHHHHHHHHHHHh
Q 006669 498 TALFNLCIYMGNK--------------------------GRAVR-AGIISALLKML-----TDSRNCMVDEALTILSVLA 545 (636)
Q Consensus 498 ~aL~nL~~~~~n~--------------------------~~lv~-~g~v~~Lv~lL-----~~~~~~~~~~Al~~L~~La 545 (636)
.|+.......+|. ..+.+ .|...++++-+ ..-+..+++.+..+|..|+
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 8887665443332 11111 34444555443 2247788999999999987
Q ss_pred cChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHH
Q 006669 546 SNPEAKIAIVKASTIPVLIVLLRTGLPRNKENA 578 (636)
Q Consensus 546 ~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A 578 (636)
... ..-...+.+++++....+.+...+.-+
T Consensus 573 ~~~---pk~~a~~~L~~lld~~ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 573 LTE---PKYLADYVLPPLLDSTLSKDASMRHGV 602 (1133)
T ss_pred Hhh---HHhhcccchhhhhhhhcCCChHHhhhh
Confidence 632 122344667888777766666555433
No 275
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.06 E-value=64 Score=33.08 Aligned_cols=211 Identities=16% Similarity=0.143 Sum_probs=119.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhhCcchHHHHHHh
Q 006669 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSIYENNKGLIMLA 434 (636)
Q Consensus 357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~~~~k~~I~~~ 434 (636)
|=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++..+..|........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~----- 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP----- 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----
Confidence 3456778889999999988887654433221 122235666666643 465556556777766664222111
Q ss_pred CChHHHHHH-Hhc-----CcHHHHHHHHHHHHHccCCCchhHHHHh--cCchHHHHhhhccC-CHHHHHHHHHHHHhhhh
Q 006669 435 GAIPSIVQI-LRA-----GSMEARENAAATLFSLSLLDENKIIIGA--SGAIPALVDLLQNG-STRGRKDAATALFNLCI 505 (636)
Q Consensus 435 G~I~~Lv~l-L~~-----~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~ 505 (636)
+....+++. .++ -....|...-.+|..|... +...+.. .+.+..+++.+... +|+....+...+..+..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 112222222 222 2345677777777777544 2333322 36778888887643 78888777777776654
Q ss_pred ccchHHHHHHhchHHHHHHHhcC-------C---CH-H-HHHHHHHHH-HHHhcChhhHHHHHhcCcHHHHHHHHcCCCH
Q 006669 506 YMGNKGRAVRAGIISALLKMLTD-------S---RN-C-MVDEALTIL-SVLASNPEAKIAIVKASTIPVLIVLLRTGLP 572 (636)
Q Consensus 506 ~~~n~~~lv~~g~v~~Lv~lL~~-------~---~~-~-~~~~Al~~L-~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~ 572 (636)
.-+. ...+.-+.+.+.. + ++ + ..+.-...| .-+++++.- ..-++|.|++-|.++++
T Consensus 154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 154 EFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSP 222 (262)
T ss_pred hccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCc
Confidence 4332 2233334444321 1 11 1 222222233 344444432 23568999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 006669 573 RNKENAAAILLSLCKR 588 (636)
Q Consensus 573 ~~ke~A~~~L~~L~~~ 588 (636)
.+|.-+..+|...+..
T Consensus 223 ~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 223 SVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876653
No 276
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.93 E-value=92 Score=36.13 Aligned_cols=115 Identities=18% Similarity=0.099 Sum_probs=76.6
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669 393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII 472 (636)
Q Consensus 393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 472 (636)
.|.+..|++...+.+..++...+.+|..++........-+-.+....+..-+....+.+|..|..+|..+=.++.+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 36677777878888999999999999888763222223333455666666677778899999999999986432210
Q ss_pred HhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHH
Q 006669 473 GASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAV 514 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv 514 (636)
+..+...++.++++. +++++..|+ .|++..+.....++
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIV 199 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHH
Confidence 114556778888765 678888654 45554444444444
No 277
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.92 E-value=12 Score=45.14 Aligned_cols=138 Identities=23% Similarity=0.184 Sum_probs=101.6
Q ss_pred CHHHHHHhhc----CCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCch
Q 006669 395 AIPVLVNLLT----TDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDEN 468 (636)
Q Consensus 395 ~i~~Lv~lL~----s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~ 468 (636)
..|.++...+ ..++++|..|.-+|..+.. +.+.+ ...++.|+.+|. ++++.+|.|+...++.++..-.|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4566677664 3678999999999988765 22222 234789999997 67899999999999988764332
Q ss_pred hHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 469 KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 469 ~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
-.. -.-+.|...|++.++.+++.|...|.+|-.++ +++ .|.++-+...|.++++++.+.|=....-|+.
T Consensus 995 lie----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIE----PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 111 23356677788899999999999999997754 444 6888888999999999998888755554444
No 278
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.61 E-value=61 Score=37.72 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=50.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHH
Q 006669 361 LSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSI 440 (636)
Q Consensus 361 L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~L 440 (636)
|..++..+|-..++.|..|- .++ +. ...+|.+..+|.+.++.++.+|+-++..+-+.- ..+ -..+-+.+
T Consensus 108 LQHPNEyiRG~TLRFLckLk--E~E----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L-~pDapeLi 176 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLK--EPE----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHL-IPDAPELI 176 (948)
T ss_pred ccCchHhhcchhhhhhhhcC--cHH----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhh-cCChHHHH
Confidence 44445555544455444442 121 12 246788888999999999999998887665420 001 12222333
Q ss_pred HHHH-hcCcHHHHHHHHHHHHHc
Q 006669 441 VQIL-RAGSMEARENAAATLFSL 462 (636)
Q Consensus 441 v~lL-~~~~~e~~~~Aa~~L~~L 462 (636)
-+.| ...++..+.||--.|+..
T Consensus 177 ~~fL~~e~DpsCkRNAFi~L~~~ 199 (948)
T KOG1058|consen 177 ESFLLTEQDPSCKRNAFLMLFTT 199 (948)
T ss_pred HHHHHhccCchhHHHHHHHHHhc
Confidence 3443 334677777766555543
No 279
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=77.52 E-value=19 Score=36.78 Aligned_cols=136 Identities=17% Similarity=0.046 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHhhhhccchHHHHHHhc--hHHHHHHHhcCC----CHHHHHHHHHHHHHHhcChh-hH-HHHHhcCc
Q 006669 488 GSTRGRKDAATALFNLCIYMGNKGRAVRAG--IISALLKMLTDS----RNCMVDEALTILSVLASNPE-AK-IAIVKAST 559 (636)
Q Consensus 488 ~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g--~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~~~~-~~-~~i~~~g~ 559 (636)
.++..+..+++++.|+-.+..++..+.+.. .+...+..+... +..++-.+..++.|++..-- .+ ..-.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 467888899999999999888888887743 344444434333 56777778888889976211 11 00011123
Q ss_pred HHHHHHHH-cC-CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHH
Q 006669 560 IPVLIVLL-RT-GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK-SGTERAKRKATSL 623 (636)
Q Consensus 560 i~~Lv~lL-~~-~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~l 623 (636)
+..+++.+ .. .+++..-.++-+|.+|+..++.........|+...+..... ...++.++-+..+
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 45555533 22 46788888888999998766555555555666666665554 4578888877653
No 280
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=77.51 E-value=15 Score=29.85 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 006669 534 VDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAILLSLCKRDTENLACISRLGA 601 (636)
Q Consensus 534 ~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~ 601 (636)
...|++++.++++.+.+...+-+.+.++.++++... +....|--|..+|..++. +.+.+..+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 457999999999999999888888999999999875 457788888888876665 5566666666553
No 281
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.25 E-value=17 Score=42.50 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=102.1
Q ss_pred hcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHH
Q 006669 445 RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLK 524 (636)
Q Consensus 445 ~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~ 524 (636)
.++-+.++-.+...|..+....+.+..+...+.+...++.|++.++-+--+|...+..||-- ....++|-|.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 33445677788888888887776667777779999999999998888888888877777643 22446666666
Q ss_pred H-hcC--CC-HHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHc
Q 006669 525 M-LTD--SR-NCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRL 599 (636)
Q Consensus 525 l-L~~--~~-~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~ 599 (636)
. ... .. .+.+-..-.++.++... .+-...-. +-.+...+..++++....|..+.+++.++|....-...... .
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ 887 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-H 887 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-H
Confidence 3 322 11 22222333444444331 11000000 11233444444544456688888889888875432222211 1
Q ss_pred CChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 006669 600 GAVIPLTELTK-SGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 600 G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~~ 629 (636)
.+...++.+.+ +|..-+||.|.-++..+-+
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 13334444443 5678888888888876643
No 282
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.15 E-value=1.4 Score=46.15 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=36.0
Q ss_pred CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL 302 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l 302 (636)
...|..-.|-||.+-..|-+.+||||+.| |+.-. .....||+|++..
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs--~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS--KHLPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHH--hhCCCCchhHHHH
Confidence 34566778999999999999999999988 54322 2346699998754
No 283
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=77.11 E-value=2.8 Score=42.73 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=37.0
Q ss_pred Cccch-hhccCCee----cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669 260 CPISL-ELMRDPVI----VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL 307 (636)
Q Consensus 260 CPis~-~~m~dPv~----~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 307 (636)
||+|. +...+|.+ =+|||+.|-+|.-.-|..|...||.|+..+....+
T Consensus 3 Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 3 CPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 77774 33344433 38999999999999999999999999987765444
No 284
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=76.93 E-value=1.1e+02 Score=32.55 Aligned_cols=154 Identities=15% Similarity=0.081 Sum_probs=108.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc-cChhhHHHHHhc-C-CHHHHHHhhcCC-----C--------hHHHHHHHHH
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSK-RSTDNRIIIADA-G-AIPVLVNLLTTD-----D--------VMTQEHAVTA 417 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~-~~~~~r~~i~e~-g-~i~~Lv~lL~s~-----d--------~~~~e~Av~a 417 (636)
++.+.+.|++........+++-|..+.. .+......+... + -.+.+.+++... + +.++.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6667778888887788888888888877 554555555443 3 355666666321 1 2788888888
Q ss_pred HHHhhh--CcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHH-ccCCC----chhHHHHhcCchHHHHhhhccCC
Q 006669 418 ILNLSI--YENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFS-LSLLD----ENKIIIGASGAIPALVDLLQNGS 489 (636)
Q Consensus 418 L~nLs~--~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~----~~~~~i~~~g~i~~Lv~LL~~~~ 489 (636)
++.+.. ++..+..+.+ .+.+..+.+-|..+++++......+|.. +..++ ..|..+.....+..|+.+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 877766 4556776765 5678888888888889999999988885 43333 34566666778888998776655
Q ss_pred H----HHHHHHHHHHHhhhhcc
Q 006669 490 T----RGRKDAATALFNLCIYM 507 (636)
Q Consensus 490 ~----~~k~~A~~aL~nL~~~~ 507 (636)
+ .+...+-..|..+|.++
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 5 67777777787777654
No 285
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.57 E-value=1.1e+02 Score=37.01 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=65.7
Q ss_pred chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHc---CCCHHHHHHHHHHHH
Q 006669 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLR---TGLPRNKENAAAILL 583 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~---~~s~~~ke~A~~~L~ 583 (636)
+.+.++..+|++..|++++....+.+.-+-+..|..++. +|.+.+.....|++..|++++. +++...-.+|..++-
T Consensus 899 pdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIve 978 (2799)
T KOG1788|consen 899 PDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVE 978 (2799)
T ss_pred chHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHH
Confidence 347889999999999999988889999899999999988 5678877778899999999885 455556667777777
Q ss_pred Hhhc
Q 006669 584 SLCK 587 (636)
Q Consensus 584 ~L~~ 587 (636)
.||.
T Consensus 979 mLga 982 (2799)
T KOG1788|consen 979 MLGA 982 (2799)
T ss_pred HHhh
Confidence 7765
No 286
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.50 E-value=52 Score=41.18 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHH-hcChhhHHHHHhcCcHHHHHHHH
Q 006669 489 STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVL-ASNPEAKIAIVKASTIPVLIVLL 567 (636)
Q Consensus 489 ~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L-a~~~~~~~~i~~~g~i~~Lv~lL 567 (636)
+...|+-|+.-+..++.....+.+=.-...||.|.+.=.|++..++ .|..-+|+. ...+...-.-.-..++.-|+.-|
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 4455555665555555433222111113467777777667777765 455555554 33322211111124556666666
Q ss_pred cCCCHHHHHHHHHHHHHhhccCh
Q 006669 568 RTGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 568 ~~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
.+...++||.++-+|..|-.+.+
T Consensus 1049 t~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCC
Confidence 67779999999999999987643
No 287
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=1.6 Score=45.33 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=38.8
Q ss_pred CCC--CcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669 253 IIP--ADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL 302 (636)
Q Consensus 253 ~~p--~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l 302 (636)
..| +|=+||||..---..|+.||||.-|..||.+++- |.+.|=.|+...
T Consensus 416 ~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv 466 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTV 466 (489)
T ss_pred CCCCcccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEeccee
Confidence 445 6789999988778899999999999999999986 355565554433
No 288
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.36 E-value=15 Score=33.95 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|+++++.++..|+..|-.+.++. ..-...+++.+++..|+.++. ..++.++..++..+.+.+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999864 444566777889999999887 4567889999999988875
No 289
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.04 E-value=17 Score=32.95 Aligned_cols=73 Identities=22% Similarity=0.185 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcC---CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTT---DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s---~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|-+.|+++++.++..|+..|-.+.+.... -...+....++..|++++.. .++.++..++..+.+.+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999987644 45666666777889998875 467899999999988875
No 290
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=75.95 E-value=28 Score=32.76 Aligned_cols=143 Identities=18% Similarity=0.142 Sum_probs=77.0
Q ss_pred ChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHH
Q 006669 436 AIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV 514 (636)
Q Consensus 436 ~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv 514 (636)
.++.|..+|+++ ++..|..+.++|+.|-..|.++.+....+. +.-. -.+.+...... .+.+... ...-....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~---~l~~~~~-~~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDI---SLPMMGI-SPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhh---HHhhccC-CCchHHHH
Confidence 466778888876 699999999999999877777666433211 0000 00111111111 1111111 11223333
Q ss_pred HhchHHHHHHHhcCCCH-HHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 515 RAGIISALLKMLTDSRN-CMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 515 ~~g~v~~Lv~lL~~~~~-~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
-..++..|+++|++.+- .-...++.++.++......+..-.=.-++|.++..+++.++..+|.-..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44578889998877432 222345555555553322221111124789999999877777777655555444
No 291
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.50 E-value=23 Score=30.46 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHH-hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHh
Q 006669 367 EERRAAVAEIRSLSKRSTDNRIIIA-DAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILR 445 (636)
Q Consensus 367 ~~~~~Al~~L~~La~~~~~~r~~i~-e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~ 445 (636)
++|..|+..|..--.++--.-.-+. +.+.+..|+.-+..++...++.++..|..|..++.....+.+-|+...+-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4666776655432222211122222 335566677777777777889999999999999999998989998888665544
Q ss_pred cCcHHHHHHHHHH
Q 006669 446 AGSMEARENAAAT 458 (636)
Q Consensus 446 ~~~~e~~~~Aa~~ 458 (636)
.-++..+...-.+
T Consensus 82 ~~~~~~~~~id~i 94 (98)
T PF14726_consen 82 NVEPNLQAEIDEI 94 (98)
T ss_pred cCCHHHHHHHHHH
Confidence 4455544444333
No 292
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.27 E-value=10 Score=32.24 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~ 423 (636)
...+..+..|.++.+-+|-+++..|+.|..... ...+-..+.+..+...|+.+|+.+--+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 356778888999888899999999999987654 1112223556777888888999999999999999986
No 293
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=74.20 E-value=20 Score=42.37 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=95.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH--hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML--AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKII 471 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~--~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 471 (636)
..+|.|++...+.+...+-+-+.+|.++-.+-.. ..+.. ...+|.|++-|.-.+..++..+..++.-+..-.+ ..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~--tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE--TL 943 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc--cc
Confidence 5688888888766666666777777776653332 33332 4577888888888888888888888776533221 11
Q ss_pred HHhc--CchHHHHhhhccCC---HHHHHHHHHHHHhhhh-ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 006669 472 IGAS--GAIPALVDLLQNGS---TRGRKDAATALFNLCI-YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTI 540 (636)
Q Consensus 472 i~~~--g~i~~Lv~LL~~~~---~~~k~~A~~aL~nL~~-~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~ 540 (636)
+-+. ..+|.++.+=.+.+ ..++..|+.+|..|.. .+.+.-.-.+..++..|...|.++..-++++|+.+
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1111 35566666544433 5788999999999887 44444444556678888898988777778877654
No 294
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=73.69 E-value=25 Score=34.85 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CChHHHHHHHHHHHHhhhCcc--hHHHHHHhCChHHHH
Q 006669 369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----DDVMTQEHAVTAILNLSIYEN--NKGLIMLAGAIPSIV 441 (636)
Q Consensus 369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----~d~~~~e~Av~aL~nLs~~~~--~k~~I~~~G~I~~Lv 441 (636)
...|+..|.-++. .++.|..+.++-.--.|-.+|.. .....+..++.++..|.++++ ....+..-..+|..+
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3456666777775 67888888876543334444432 223466788888999988543 345555678999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--------CchHHHHh-hhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669 442 QILRAGSMEARENAAATLFSLSLLDENKIIIGAS--------GAIPALVD-LLQNGSTRGRKDAATALFNLCIYMGNKGR 512 (636)
Q Consensus 442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--------g~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~~~~n~~~ 512 (636)
+++..|+.-.+.-|+.++..+-.+|..-..|.+. ..+..++. +...++.+..+.++++-..||..+..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 9999998877877888887777777654444432 22333332 33456778888888888888876655554
Q ss_pred H
Q 006669 513 A 513 (636)
Q Consensus 513 l 513 (636)
+
T Consensus 276 L 276 (315)
T COG5209 276 L 276 (315)
T ss_pred H
Confidence 4
No 295
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.14 E-value=1.2e+02 Score=31.04 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=82.5
Q ss_pred CChHHHHHHHhcC--cHHHHHHHHHHHHHccCCCc--------hhHHHHhcCchHHHHhhhccCC----HHHHHHHHHHH
Q 006669 435 GAIPSIVQILRAG--SMEARENAAATLFSLSLLDE--------NKIIIGASGAIPALVDLLQNGS----TRGRKDAATAL 500 (636)
Q Consensus 435 G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~--------~~~~i~~~g~i~~Lv~LL~~~~----~~~k~~A~~aL 500 (636)
|..+.+..++-.| +....+.+..+|..|....+ ++..+.-.+.+|.++.-+.+++ .......+..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 6777777777666 55666677777777765432 2333333356777777776665 24455667777
Q ss_pred Hhhhhcc--chHHHHHH------------------------------hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Q 006669 501 FNLCIYM--GNKGRAVR------------------------------AGIISALLKMLTDSRNCMVDEALTILSVLASNP 548 (636)
Q Consensus 501 ~nL~~~~--~n~~~lv~------------------------------~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 548 (636)
..+|... ++-+++.. ..++..|+++|.++...++...+.+|..+-.+.
T Consensus 140 a~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~ 219 (262)
T PF14225_consen 140 AQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHV 219 (262)
T ss_pred HHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccc
Confidence 7776432 22222211 113444555665566666667777777666654
Q ss_pred hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 549 EAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 549 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
+.+.. ...+.+.+|++++++.- -..|..+|-+.
T Consensus 220 d~~~~-~~~dlispllrlL~t~~---~~eAL~VLd~~ 252 (262)
T PF14225_consen 220 DMRSP-HGADLISPLLRLLQTDL---WMEALEVLDEI 252 (262)
T ss_pred cCCCC-cchHHHHHHHHHhCCcc---HHHHHHHHHHH
Confidence 44433 23346777777776542 22355555443
No 296
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.35 E-value=23 Score=32.81 Aligned_cols=73 Identities=10% Similarity=0.102 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|.++++.++..|+..|-.+.++... -...++...++..|++++.. .+..++...+..+...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999986543 35567777889999999987 678899999999988875
No 297
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.23 E-value=57 Score=34.03 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=76.4
Q ss_pred HHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc---CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhc
Q 006669 441 VQILRAGSMEARENAAATLFSLSLLDENKIIIGAS---GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAG 517 (636)
Q Consensus 441 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g 517 (636)
+..|.+.+++....+...+..|+..+. .+... ..|-.++.-+++....+.+.|+.++..+..+-.+.-.-.-.+
T Consensus 94 l~~L~s~dW~~~vdgLn~irrLs~fh~---e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 94 LKKLSSDDWEDKVDGLNSIRRLSEFHP---ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHhchHHHHHHhhhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666665554332 11111 355566666776666778888888888765544432222233
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669 518 IISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584 (636)
Q Consensus 518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 584 (636)
.+..|..--...+.-+++.|-.+|..+..+..-. -+++.|.-.+++..++++..++....+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 3333333333356678888888888777653322 235556666666777777666554433
No 298
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.23 E-value=23 Score=33.45 Aligned_cols=108 Identities=20% Similarity=0.207 Sum_probs=65.9
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchH----
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNK---- 510 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~---- 510 (636)
+..+..+|++.+++.+-.++..+.-+......-...... ..+..|+.+|+.. ++..++.++.+|..|...-.++
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 445667777777888877777776665543322222222 5788889999875 4567777887877765433332
Q ss_pred HHHHH---hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 511 GRAVR---AGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 511 ~~lv~---~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
.++.. .++++.+++++.+ ....+.++.+|..+-.
T Consensus 107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 23322 3466666666653 4555667777766654
No 299
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=70.74 E-value=6.6 Score=42.91 Aligned_cols=153 Identities=16% Similarity=0.093 Sum_probs=86.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-----CcchHHHHHH-hC-ChHHHHHHHh--c-CcHHHHHHHHHHHHHcc
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-----YENNKGLIML-AG-AIPSIVQILR--A-GSMEARENAAATLFSLS 463 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-----~~~~k~~I~~-~G-~I~~Lv~lL~--~-~~~e~~~~Aa~~L~~Ls 463 (636)
.+...+...|.+..-..++.+.+++.|++. -+..+..--. .| .+..++..-. + ....++.+|.+.|.|++
T Consensus 433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence 344455556655556788899999998874 1221111111 11 1222222211 1 24678889999999886
Q ss_pred CCCchhHH--H--HhcCchHHHHhh-hccCCHHHHHHHHHHHHhhhhccchHHHHH--HhchHHHHHHHhcC-CCHHHHH
Q 006669 464 LLDENKII--I--GASGAIPALVDL-LQNGSTRGRKDAATALFNLCIYMGNKGRAV--RAGIISALLKMLTD-SRNCMVD 535 (636)
Q Consensus 464 ~~~~~~~~--i--~~~g~i~~Lv~L-L~~~~~~~k~~A~~aL~nL~~~~~n~~~lv--~~g~v~~Lv~lL~~-~~~~~~~ 535 (636)
..-+.... . ...+.+..++.- ...+.-.++.+|+.++.||..+..-+-+-. ..-+.+.|..++.+ .+-.++.
T Consensus 513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi 592 (728)
T KOG4535|consen 513 QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI 592 (728)
T ss_pred HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence 43211110 0 011233333222 223467899999999999987664322111 23367888888876 5777888
Q ss_pred HHHHHHHHHhc
Q 006669 536 EALTILSVLAS 546 (636)
Q Consensus 536 ~Al~~L~~La~ 546 (636)
.|.++|..-..
T Consensus 593 ~AA~aL~vp~~ 603 (728)
T KOG4535|consen 593 RAAAALSVPGK 603 (728)
T ss_pred hhhhhhcCCCC
Confidence 88888876655
No 300
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.21 E-value=2.7 Score=44.14 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=36.8
Q ss_pred cccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 257 DFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.-.|=||+.--+|.+++||-|. .|..|-.. +.-.+..||+||++...
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~-Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKS-LRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHH-HHHhhcCCCccccchHh
Confidence 3579999999999999999997 67777543 33345679999997743
No 301
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.92 E-value=68 Score=37.03 Aligned_cols=107 Identities=19% Similarity=0.153 Sum_probs=76.3
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH------hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----
Q 006669 478 IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR------AGIISALLKMLTDSRNCMVDEALTILSVLASN---- 547 (636)
Q Consensus 478 i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~------~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~---- 547 (636)
+..++++|.+.+--.+-..+.++.|+..+.....++++ ...+..|++-+.+.++-++..|+.++..++.-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 45677888888877788888888998765444445554 23556666667788999999999999988873
Q ss_pred hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669 548 PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 548 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 589 (636)
+.-|..+ +...++-++..+.-+|.+|+.++..|-...
T Consensus 381 ~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 3344444 345566777777888999998887665433
No 302
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.91 E-value=22 Score=32.27 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=57.6
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhc---CCHHHHHHHHHHHHHhhc
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKS---GTERAKRKATSLLEHLRK 629 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~---g~~~~k~kA~~lL~~l~~ 629 (636)
++..|-+-|.++++..+..|+.+|-.+..+.+. ....+.....+..|..++.. .++.+++++..++.....
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 466777888889999999999999999988876 55566666777779998875 467899999998887654
No 303
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=68.57 E-value=30 Score=31.87 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC------CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTT------DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s------~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..+.+.|.++++.++..|+..|-.+.+.. ..-...++..+++..|++++.. .+..++...+..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999998854 3346677778889999999953 457888998888887764
No 304
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.48 E-value=36 Score=35.42 Aligned_cols=135 Identities=17% Similarity=0.196 Sum_probs=85.4
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh
Q 006669 478 IPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK 556 (636)
Q Consensus 478 i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~ 556 (636)
+...+..|.+.++..+.+++..|..|+.++. ....+. +.+|..+++-+++....+...|+.++..+.+.-... +.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--IDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3444556667788888889999999887764 222222 347777888888888888999999999887743221 111
Q ss_pred cCcHHHHH-HHHcCC---CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 006669 557 ASTIPVLI-VLLRTG---LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624 (636)
Q Consensus 557 ~g~i~~Lv-~lL~~~---s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 624 (636)
....++ .++..+ +.-+++.|-.+|..+..+-.. .-+++.|...++...++++.++....
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccc
Confidence 233333 344432 355788888888877753211 12345555556677777777776543
No 305
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=67.87 E-value=1.4e+02 Score=34.40 Aligned_cols=172 Identities=13% Similarity=0.090 Sum_probs=97.9
Q ss_pred hcCCChHHHHHHHHHHHHhhhCcchHHHHHH----hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--C
Q 006669 403 LTTDDVMTQEHAVTAILNLSIYENNKGLIML----AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS--G 476 (636)
Q Consensus 403 L~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~----~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g 476 (636)
+-.-..+.+.-|+.+|+-+..+...-..+.. +..+..++..++ +.+.-+.-++++|.|+-.+.-++..+... -
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~ 631 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLES 631 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3334566677777777777665544333332 234455555554 56777788999999998776665555443 1
Q ss_pred chHHHHhhhccC-CHHHHHHHHHHHHhhhh--ccchHHHHHHhchHHHHHHHhc---C--CCHHHHHHHHHHHHHHhcCh
Q 006669 477 AIPALVDLLQNG-STRGRKDAATALFNLCI--YMGNKGRAVRAGIISALLKMLT---D--SRNCMVDEALTILSVLASNP 548 (636)
Q Consensus 477 ~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~--~~~n~~~lv~~g~v~~Lv~lL~---~--~~~~~~~~Al~~L~~La~~~ 548 (636)
.+.++++. +.+ +...+..-++...|++. ...+-+ .|..+.|...+. . .+-+..-.++-+|.+|+..+
T Consensus 632 i~~~~~~~-~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 632 ILDPVIEA-SSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred Hhhhhhhh-hcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 22222222 222 34455555555556543 222211 334444444332 2 23334556788889999988
Q ss_pred hhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHH
Q 006669 549 EAKIAIVKASTIPVLIVLLRTG--LPRNKENAAA 580 (636)
Q Consensus 549 ~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~ 580 (636)
.....+...-.+..++.-+++. .+..+..|-.
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 8888888777788888888752 3555554443
No 306
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=67.47 E-value=32 Score=31.25 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCC--hHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTTDD--VMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s~d--~~~~e~Av~aL~nLs~ 423 (636)
+.++..|-+.|+++++.++..|+..|-.+.+.. ..-...+....++..|+.+++... +.++..++..+.+.+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999874 444566777788999999887643 3378888888877765
No 307
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=66.97 E-value=3 Score=31.63 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=30.2
Q ss_pred CccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccC
Q 006669 260 CPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL 305 (636)
Q Consensus 260 CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 305 (636)
|=.+...=+..++.||||..++.+..- +.-.-||.|+.++...
T Consensus 10 ~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 10 CVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFD 52 (55)
T ss_pred EEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCC
Confidence 444445556688999999999998322 2334599999988653
No 308
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=66.80 E-value=1.4e+02 Score=34.55 Aligned_cols=253 Identities=13% Similarity=0.144 Sum_probs=140.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCC
Q 006669 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGA 436 (636)
Q Consensus 357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~ 436 (636)
.+..+.-.+.+++..-...|..-.. .--+-++..-.+|.|+..+..++ .-...+..|+.+.+.-+... ...+.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l~---~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i 331 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRLD---NFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRI 331 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccch
Confidence 3445555666777665555554222 12223444455677777776666 23344455555544211111 45678
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHh
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRA 516 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~ 516 (636)
+|.|+.+.+..+..+|..-+.-+-.. .+..-..+.+...+|.+..-+.+.++-.++..+..+..|+..=..+ -+..
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~ 407 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNG 407 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcH
Confidence 99999999988877775433332222 1222345566678899999999999999999988888776422211 2222
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCc-HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHH
Q 006669 517 GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKAST-IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC 595 (636)
Q Consensus 517 g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~-i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 595 (636)
..+..+.++-.+.+.+++....-+|..++.+-.. ..+.++ +.....-+++.-...|..++..++..+..-.. . .
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~-~-~ 482 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ-S-E 482 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-h-h
Confidence 2344444444455666766666666666654211 112222 22333344544455667777777666543211 1 1
Q ss_pred HHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 006669 596 ISRLGAVIPLTELTKSGTERAKRKATSLLEH 626 (636)
Q Consensus 596 i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 626 (636)
+..-+.+.+.-+.-+.+..++..|-..++.
T Consensus 483 -va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 483 -VANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred -hhhhccccccccccCcccchhhHHHHHHHH
Confidence 122356666666666666667666666554
No 309
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=66.68 E-value=2.1e+02 Score=31.67 Aligned_cols=145 Identities=16% Similarity=0.061 Sum_probs=86.7
Q ss_pred hHHHHhhhcc-CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHH-HHHHHhcChhhHHHHH
Q 006669 478 IPALVDLLQN-GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALT-ILSVLASNPEAKIAIV 555 (636)
Q Consensus 478 i~~Lv~LL~~-~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~-~L~~La~~~~~~~~i~ 555 (636)
+..+++.|.+ .+...|+.|++.|..++.+...+-.=-..-+|..+++--.+..+++...|.. ++..++++..-+
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---- 406 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---- 406 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----
Confidence 3456777776 5778899999999999987654433333446777777777766665555443 445555543222
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 556 KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 556 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
.|..+..++.+.+...--.++..+..++..-...--.-+-....|.+++-..+.+..+|+.|...|-.|..
T Consensus 407 ---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 ---CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ---HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 23334444444333222334445555554322211122334678888888888888899888888876643
No 310
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.32 E-value=1.3 Score=45.00 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=31.0
Q ss_pred cccCccchhhccCCeecCCCch-hhhHHHHHHHcCCC--CCCCCCCccc
Q 006669 257 DFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGN--VTCPKTQQKL 302 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~--~~cP~~~~~l 302 (636)
+-+|-||++.-+|=|+++|||. .|-.| |. ..||+|++.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 7889999999999999999995 44444 32 2599998754
No 311
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.39 E-value=1.1e+02 Score=36.71 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=82.4
Q ss_pred CCHHHHHHhhcC--------CChHHHHHHHHHHHHhhh---CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHc
Q 006669 394 GAIPVLVNLLTT--------DDVMTQEHAVTAILNLSI---YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSL 462 (636)
Q Consensus 394 g~i~~Lv~lL~s--------~d~~~~e~Av~aL~nLs~---~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~L 462 (636)
|.++.++..|.+ .++.-.+-|+.++.+|+. ....-+-.++.=.++.+...++++..-.|..|++++...
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 667788888862 345667788888888874 112222233443456666667888888999999999999
Q ss_pred cCCC-chhHHHHhcCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchH-HHHHH--hchHHHHHHHhcC
Q 006669 463 SLLD-ENKIIIGASGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNK-GRAVR--AGIISALLKMLTD 528 (636)
Q Consensus 463 s~~~-~~~~~i~~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~-~~lv~--~g~v~~Lv~lL~~ 528 (636)
+..+ .+.... ..++......|. +..-.++..|+-||..+-.+.+.. .++-. -+.+..|+.+.+.
T Consensus 490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 8433 111111 134455555566 556789999999999987665433 33332 2344445555544
No 312
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.36 E-value=23 Score=32.74 Aligned_cols=71 Identities=11% Similarity=0.075 Sum_probs=59.1
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhh
Q 006669 558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLR 628 (636)
Q Consensus 558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~ 628 (636)
.++..|..-|.+.++.++-.|+.+|-.+..+.+. ...++.....+..|..++.. .++.++++...++....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3466777778888999999999999999988775 45577788899999999987 78899999988887664
No 313
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.04 E-value=1.7e+02 Score=36.98 Aligned_cols=181 Identities=20% Similarity=0.186 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH--hCChHHH
Q 006669 365 SVEERRAAVAEIRSLSKRSTDNRIIIAD--AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML--AGAIPSI 440 (636)
Q Consensus 365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e--~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~--~G~I~~L 440 (636)
.+..+.-|+.-+..+++.. +..+.- .-.||.|.+.=..++..+| .|++-++|--..+ .|..+-+ ...+.-|
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D-~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITD-SKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3555666776666666532 222221 1245666665555666655 5666677755422 1222211 3345555
Q ss_pred HHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhccCCHHHHH---HHHHHHHhhhhc-----cchHH
Q 006669 441 VQILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQNGSTRGRK---DAATALFNLCIY-----MGNKG 511 (636)
Q Consensus 441 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~~~~~~k~---~A~~aL~nL~~~-----~~n~~ 511 (636)
+.-|.+..+.+|+.++-+|..|-...++-...-.. .....+...+.+=...+++ .++.+|..||.. ++.+.
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 55566667999999999999997765433222111 3334444444332333333 345666666532 22244
Q ss_pred HHHHhchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcChhh
Q 006669 512 RAVRAGIISALLKM-LTDSRNCMVDEALTILSVLASNPEA 550 (636)
Q Consensus 512 ~lv~~g~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~ 550 (636)
.-+-+.++|.|++- +-+.-.+++..++.++..|+.+...
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 44444567776653 2256778899999999999986554
No 314
>PRK14707 hypothetical protein; Provisional
Probab=64.96 E-value=4.5e+02 Score=34.88 Aligned_cols=267 Identities=18% Similarity=0.107 Sum_probs=132.1
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHH
Q 006669 354 IEALVRKLSS--RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGL 430 (636)
Q Consensus 354 i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~ 430 (636)
+..|++-++. .+.+.+..+......++. ++..+..+ ..-+|..+++-++. ++...-.+|+..|.....++.....
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 4445555542 344445444444455554 33344333 34456677776654 4544556666666654444333333
Q ss_pred HHHhCChHHHHHHHhc-CcHHHHHHHHHHHH-HccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHh-hhhcc
Q 006669 431 IMLAGAIPSIVQILRA-GSMEARENAAATLF-SLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIYM 507 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~n-L~~~~ 507 (636)
-++.-.+...+.-|.. .+..+-.+|+..|. .|+....-+..+...+.-..|=.+-+=.+.++...|+..|.. |.. +
T Consensus 243 ~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d 321 (2710)
T PRK14707 243 ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-D 321 (2710)
T ss_pred hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-c
Confidence 3343344444444443 33334444444433 454333333333222221222112122345566666666654 433 3
Q ss_pred chHHHHHHhchHHHHHHHhcC-CCHHHHHHHH-HHHHHHhcChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 006669 508 GNKGRAVRAGIISALLKMLTD-SRNCMVDEAL-TILSVLASNPEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAILLS 584 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al-~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~ 584 (636)
..-..-.+.-.+.-.++-|+. ++......|. .+-..|+.+++-+..+- ..++..++.-+.. ........|+..|..
T Consensus 322 ~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~ 400 (2710)
T PRK14707 322 PELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAE 400 (2710)
T ss_pred HhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 322233333445555666654 4444444444 44457777777776664 3345555555543 333344455666655
Q ss_pred hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 006669 585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLL 624 (636)
Q Consensus 585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 624 (636)
=..++++-+..+-..|+-..|--|.+=.+..+.+.|++.|
T Consensus 401 ~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 401 HVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred HhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 4445777777776666666666666656555555555444
No 315
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.66 E-value=1.2e+02 Score=35.41 Aligned_cols=97 Identities=25% Similarity=0.278 Sum_probs=68.7
Q ss_pred CChHHHHHH-HhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHH
Q 006669 435 GAIPSIVQI-LRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGR 512 (636)
Q Consensus 435 G~I~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~ 512 (636)
++|..|+++ ...++.+++..|.-+|.-+...+. ...+..|++|.+. ++-++.-++.||.--|...+++..
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 456666766 455678899988888887765543 3557778888754 789999999999988887777654
Q ss_pred HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 006669 513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545 (636)
Q Consensus 513 lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La 545 (636)
+..|-.|..++..-++.-|+-+++.+.
T Consensus 626 ------i~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 626 ------INLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ------HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 334444555666667777777776554
No 316
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=64.61 E-value=1.9 Score=34.70 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=24.7
Q ss_pred cCCCchhhhHHHHHHHcC--CCCCCCCCCcccc
Q 006669 273 VATGQTYERSYIQRWIDC--GNVTCPKTQQKLE 303 (636)
Q Consensus 273 ~~~G~t~~r~~I~~w~~~--~~~~cP~~~~~l~ 303 (636)
=.|-|.|-+.||.+|.+. +...||.|||...
T Consensus 49 G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 49 GYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 367889999999999974 3456999998653
No 317
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.53 E-value=27 Score=32.21 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=58.6
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 006669 558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLRK 629 (636)
Q Consensus 558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~ 629 (636)
.++..|.+-|.++++..+-.|+.+|-.+..+.+. ....+...+.+..|..++.. .++.+++++..++..-..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3567778888889999999999999988888554 56677888899999999874 567899999988876653
No 318
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.81 E-value=65 Score=39.31 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=99.9
Q ss_pred chHHHHhhhcc----CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChhhH
Q 006669 477 AIPALVDLLQN----GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT-DSRNCMVDEALTILSVLASNPEAK 551 (636)
Q Consensus 477 ~i~~Lv~LL~~----~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~ 551 (636)
..|.+++..++ ++|..+..|..||+.+..-. ..+.+ ...|.|+..|. ++++.++.+++..+..++-.-.+-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHH-HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 44555566644 36788888888888875432 22222 25778888886 578888888888888887643221
Q ss_pred HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
.. -.-+.|...|+..++.+|..|+-+|.+|..++ .+.-.|.+..+...+.+++++++.-|...-+.|+
T Consensus 996 ie----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 996 IE----PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cc----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 11 23456777788889999999999999988753 4555788999999999999999999996666554
No 319
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=62.67 E-value=1.6e+02 Score=33.94 Aligned_cols=206 Identities=21% Similarity=0.221 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH----hcC---CHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIA----DAG---AIPVLVNLLTTDDVMTQEHAVTAILNLSIYE- 425 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~----e~g---~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~- 425 (636)
+-.|+..|..-+.+........+..-. .....|..+. .+| ++..+..++.+.... ...|..+|..|....
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~ 426 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLT-DDEAAQLLASLPFHVR 426 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcC
Confidence 455566665555444333333322221 1123333333 334 466667777654432 234555666655432
Q ss_pred chHHHHHHhCChHHHHHHHhc----CcHHHHHHHHHHHHHccC----CC------chhHHHHhcCchHHHHhhhc----c
Q 006669 426 NNKGLIMLAGAIPSIVQILRA----GSMEARENAAATLFSLSL----LD------ENKIIIGASGAIPALVDLLQ----N 487 (636)
Q Consensus 426 ~~k~~I~~~G~I~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~----~~------~~~~~i~~~g~i~~Lv~LL~----~ 487 (636)
..-..+ +..+..+++. .++.++..|+-++..|.. .. ...........++.|...+. .
T Consensus 427 ~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 501 (618)
T PF01347_consen 427 RPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR 501 (618)
T ss_dssp ---HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT
T ss_pred CCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 211222 3344445443 345566666666666632 21 01111122245666666665 3
Q ss_pred CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCC---CHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHH
Q 006669 488 GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS---RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLI 564 (636)
Q Consensus 488 ~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~---~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv 564 (636)
++...+..++.||.|+-. ...++.|...+.+. +..++-.|+.+|..++..... .+.+.|.
T Consensus 502 ~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~ 564 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILL 564 (618)
T ss_dssp T-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHH
T ss_pred cCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHH
Confidence 456778888999999853 23778888888664 667777888888877553211 1234566
Q ss_pred HHHcCC--CHHHHHHHHHHHH
Q 006669 565 VLLRTG--LPRNKENAAAILL 583 (636)
Q Consensus 565 ~lL~~~--s~~~ke~A~~~L~ 583 (636)
.++... ++++|-.|..+|.
T Consensus 565 ~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 565 PIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHHH-TTS-HHHHHHHHHHHH
T ss_pred HHhcCCCCChhHHHHHHHHHH
Confidence 666543 3566666654443
No 320
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.48 E-value=41 Score=31.78 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=70.4
Q ss_pred CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhc--hHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC----h
Q 006669 476 GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAG--IISALLKMLTD-SRNCMVDEALTILSVLASN----P 548 (636)
Q Consensus 476 g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g--~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~----~ 548 (636)
..+..+..+|++.++..+..++..+.-++...+ ...+.+.| -+..|+.+|.. .+..+.+.|+.+|..|... +
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567788888888888877777777665432 45555533 67778888876 5667788888888888663 4
Q ss_pred hhHHHHHhc---CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669 549 EAKIAIVKA---STIPVLIVLLRTGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 549 ~~~~~i~~~---g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
+-..++.-. +.++.++.++.. +...+.++.+|..+....|
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 433333221 234445555443 4556677777776655443
No 321
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.05 E-value=98 Score=34.97 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=64.8
Q ss_pred hcCchHHHHhh-hccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhH
Q 006669 474 ASGAIPALVDL-LQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAK 551 (636)
Q Consensus 474 ~~g~i~~Lv~L-L~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~ 551 (636)
+.|++..|++. +.+++.++++.|+.||.-.|..+.+ .++..+++|.+ .+..++.-..-+|..-|.....+
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 34788888888 7788999999999999998876643 56667788865 56666655666666666644333
Q ss_pred HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669 552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584 (636)
Q Consensus 552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 584 (636)
.+ +..|-.++...+.-+|+.|.-++..
T Consensus 621 ~a------~diL~~L~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 621 VA------TDILEALMYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred HH------HHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 22 3334445555666677766555543
No 322
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=60.93 E-value=7.1 Score=31.85 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=25.4
Q ss_pred cCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 273 VATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 273 ~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
=-|.|.|--.||++|++. ...||..+|+..
T Consensus 52 G~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred EecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 368899999999999986 678999988753
No 323
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=60.16 E-value=5.4 Score=34.72 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=29.8
Q ss_pred CcccCccchhhccCCeecCCCc------hhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 256 ADFLCPISLELMRDPVIVATGQ------TYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~G~------t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
+.+.||||+++-..-|++-+.. -||..++.+-...| ..=|.+|+++..
T Consensus 39 e~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~ 92 (113)
T PF06416_consen 39 EHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITP 92 (113)
T ss_dssp HHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----T
T ss_pred HHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCCh
Confidence 5589999999999999987654 59999999888754 345777776654
No 324
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=59.80 E-value=64 Score=37.31 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=84.2
Q ss_pred CChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhh-hccCCHHHHHHHHHHHHhhhhccchHHHH
Q 006669 435 GAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDL-LQNGSTRGRKDAATALFNLCIYMGNKGRA 513 (636)
Q Consensus 435 G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~L-L~~~~~~~k~~A~~aL~nL~~~~~n~~~l 513 (636)
.+++.|..-++..+...++.++..+-..+..-+ ...+..-.+|.|-.+ ++..+..++.+++.++..+. +...+.
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKA 463 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHH
Confidence 445666666677788888888888887765433 233334455666555 23456788889999988887 222222
Q ss_pred HHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCC
Q 006669 514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL 571 (636)
Q Consensus 514 v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s 571 (636)
.-...+.++.+-....++.++-..+.+..++.....++..+....++|.++-+...+.
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 1122344455555567888888888888888774444345555678888888776654
No 325
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.74 E-value=1.4e+02 Score=37.59 Aligned_cols=143 Identities=11% Similarity=0.128 Sum_probs=91.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHcc-CCCchhHHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLS-LLDENKIII 472 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i 472 (636)
+.+..++..|..+.+.++..|+.+|.++...+.. .+.....-..+-.-+...+..+|+.|+..++... ..++...+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 4567778888877789999999999998763321 1111222223334455667889999999988542 33332222
Q ss_pred HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 006669 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La 545 (636)
+...+.+-+.+....+++.+...+..+|...++-..+++. ...++.-..+++..+.+.+..++.++=
T Consensus 893 ----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~--cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 893 ----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDM--CAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred ----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHH--HHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 3345556666777889999999999999887776665542 222333333344447777777777663
No 326
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=59.33 E-value=36 Score=31.33 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=56.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKS------GTERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~------g~~~~k~kA~~lL~~l~ 628 (636)
++..|..-|.++++...-.|+.+|-.+..+.+. ....+...+.+.-|+.++.. .++.++.+...++..-.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 466777888889999999999999999887765 55677788889999999853 46789999888887654
No 327
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=58.69 E-value=61 Score=38.51 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=90.8
Q ss_pred CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH--hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Q 006669 476 GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR--AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIA 553 (636)
Q Consensus 476 g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~--~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~ 553 (636)
..+|.|++.....+...|.+=+.+|.++-.+-+- ..+.. ....|.|++-|.-++..++-.++.++.-+....+....
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 5788888888866667777788888887664443 33332 45788888888777777777777777655542222111
Q ss_pred HHhcCcHHHHHHHHcCCC---HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 006669 554 IVKASTIPVLIVLLRTGL---PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATS 622 (636)
Q Consensus 554 i~~~g~i~~Lv~lL~~~s---~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~ 622 (636)
---.-.||.++.+=.+.+ ..+|+-|...|..|...-|...-.--+..++..|...+.+.---+|+.|..
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 111234666666555433 568999999999999855533333333345556666665554455665554
No 328
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.43 E-value=63 Score=37.26 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=68.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh------cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh---
Q 006669 520 SALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK------ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT--- 590 (636)
Q Consensus 520 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~------~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~--- 590 (636)
..++.+|.+.+-.++-..+.+.+|+..+-.....+.+ ...+..|++-+...+|-+|.+|..++..+|.-+.
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 4577888777777777778888888764322223332 1234555555556789999999999988886443
Q ss_pred HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 591 ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 591 ~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
..+.++ +.....-+++.+..+|++|.+++.-|
T Consensus 382 ~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 382 GRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred chHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333333 33444567788899999999988644
No 329
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=58.22 E-value=34 Score=30.70 Aligned_cols=71 Identities=17% Similarity=0.342 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHH-HHHH-cCChHHHHHhhh-----cC---CHHHHHHHHHHHHHhhc
Q 006669 560 IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA-CISR-LGAVIPLTELTK-----SG---TERAKRKATSLLEHLRK 629 (636)
Q Consensus 560 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~-~i~~-~G~i~~L~~Ll~-----~g---~~~~k~kA~~lL~~l~~ 629 (636)
...|..-|...++.+|-+|+.+|..+|..++.... .+.+ ...|..+..+-. .| +..+|.+|.+++..|-.
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 45677777778899999999999999998775444 3432 345666666654 23 35779999999998864
Q ss_pred c
Q 006669 630 L 630 (636)
Q Consensus 630 ~ 630 (636)
.
T Consensus 120 ~ 120 (122)
T cd03572 120 Y 120 (122)
T ss_pred c
Confidence 3
No 330
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.10 E-value=9.4 Score=39.73 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=44.7
Q ss_pred cCccchhhcc------CCeecCCCchhhhHHHHHHHcCCCCCCCCCCccc--cc---CCcccchhHHHHHHHH
Q 006669 259 LCPISLELMR------DPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL--EH---LTLTPNYVLRSLISQW 320 (636)
Q Consensus 259 ~CPis~~~m~------dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l--~~---~~l~pn~~lr~lI~~w 320 (636)
.|-||.+-++ -|-++.||||+|-.|+.+-...+.-.||.|+.+. .. ..+..|+++-..|+..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3555555553 2667779999999999988887777899999884 22 3355677777777665
No 331
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=58.06 E-value=74 Score=29.92 Aligned_cols=143 Identities=14% Similarity=0.132 Sum_probs=78.6
Q ss_pred chHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Q 006669 477 AIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV 555 (636)
Q Consensus 477 ~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~ 555 (636)
.++.|..+|+++ ++..+..++++|..|-.-++.+-+.+..+.=.. .-.+.+....+..+ .+....+ .-++..
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~l---~~~~~~~-~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDISL---PMMGISP-SSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhHH---hhccCCC-chHHHH
Confidence 456677788766 689999999999999777776666443211000 00011111111111 1111111 222333
Q ss_pred hcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 556 KASTIPVLIVLLRTGL-PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 556 ~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
-..++..|+.+|+..+ ..-...++.++..+....+..+..... -++|.++..+++.++..++.--.-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3346788888888765 333445677776666443333332222 2788999999888777776654444433
No 332
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=58.05 E-value=4.7 Score=31.14 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.9
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHH
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRW 287 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w 287 (636)
...||+|++.++...+++. ...|..|++|
T Consensus 35 ~~~cP~~~~~~~~~~l~~~--~~l~~~i~~~ 63 (63)
T smart00504 35 HGTDPVTGQPLTHEDLIPN--LALKSAIQEW 63 (63)
T ss_pred CCCCCCCcCCCChhhceeC--HHHHHHHHhC
Confidence 4579999999977778887 8999999988
No 333
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=57.67 E-value=5.3 Score=32.27 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=25.6
Q ss_pred CcccCccchhhccCCeecCCCchhhhHHHHHHHcCC
Q 006669 256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG 291 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~ 291 (636)
....||+|.+.+..-.++|+ .-.|..|++|+..+
T Consensus 38 ~~~~~P~t~~~l~~~~l~pn--~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 38 NGGTDPFTRQPLSESDLIPN--RALKSAIEEWCAEN 71 (73)
T ss_dssp TSSB-TTT-SB-SGGGSEE---HHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCcCCcccceEC--HHHHHHHHHHHHHc
Confidence 56789999998877778888 89999999999764
No 334
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=56.92 E-value=1.8e+02 Score=33.49 Aligned_cols=129 Identities=20% Similarity=0.171 Sum_probs=70.9
Q ss_pred HHHHHhhcC----CChHHHHHHHHHHHHhhh--Ccc--------hHHHHHHhCChHHHHHHHh----cCcHHHHHHHHHH
Q 006669 397 PVLVNLLTT----DDVMTQEHAVTAILNLSI--YEN--------NKGLIMLAGAIPSIVQILR----AGSMEARENAAAT 458 (636)
Q Consensus 397 ~~Lv~lL~s----~d~~~~e~Av~aL~nLs~--~~~--------~k~~I~~~G~I~~Lv~lL~----~~~~e~~~~Aa~~ 458 (636)
..+..++.+ .++.+...|+-++..|.. ... .+........++.+...|. .++.+.+..++.+
T Consensus 434 ~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 513 (618)
T PF01347_consen 434 KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKA 513 (618)
T ss_dssp HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Confidence 334445543 334556666666666643 111 1111222345666666665 3456777888888
Q ss_pred HHHccCCCchhHHHHhcCchHHHHhhhccC---CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHH
Q 006669 459 LFSLSLLDENKIIIGASGAIPALVDLLQNG---STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCM 533 (636)
Q Consensus 459 L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~---~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~ 533 (636)
|+|+-. ...++.|..++... +...+..|+.||..+....+. -+.+.|..++.+ .+.++
T Consensus 514 LgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~Ev 576 (618)
T PF01347_consen 514 LGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEV 576 (618)
T ss_dssp HHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHH
T ss_pred hhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhH
Confidence 888842 24677788877765 678888999999887543322 244556777755 45566
Q ss_pred HHHHHHHHH
Q 006669 534 VDEALTILS 542 (636)
Q Consensus 534 ~~~Al~~L~ 542 (636)
+-.|..+|.
T Consensus 577 RiaA~~~lm 585 (618)
T PF01347_consen 577 RIAAYLILM 585 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655554443
No 335
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=56.36 E-value=9.5 Score=39.11 Aligned_cols=43 Identities=28% Similarity=0.556 Sum_probs=35.2
Q ss_pred cccCccchhhc----cCCeecCCCchhhhHHHHHHHcCCCCCCCCCCc
Q 006669 257 DFLCPISLELM----RDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQ 300 (636)
Q Consensus 257 ~f~CPis~~~m----~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~ 300 (636)
++-|||+.+-+ .+|...+|||+--..+.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 45599999887 568889999998877777777666 99999976
No 336
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=56.01 E-value=6.6 Score=29.67 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=22.2
Q ss_pred CcccCccchhhccCCeecCCCchhhhHHHHHHHcC-CCCCCCCCCc
Q 006669 256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC-GNVTCPKTQQ 300 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-~~~~cP~~~~ 300 (636)
+.|.||.|++-+.. ..+.+-+.+++..+ ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 46999999883221 13444444444433 2456999975
No 337
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.04 E-value=3.7e+02 Score=30.68 Aligned_cols=177 Identities=21% Similarity=0.144 Sum_probs=88.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHH----HHHh---CChHHHHHHHhcCcH---HHHHHHHHHHHHccC
Q 006669 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL----IMLA---GAIPSIVQILRAGSM---EARENAAATLFSLSL 464 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~----I~~~---G~I~~Lv~lL~~~~~---e~~~~Aa~~L~~Ls~ 464 (636)
.+-.|+++|+.-+.+..+....-+.. .. ...+.. +... .++..+.+.++++.. ++...-..++..+..
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~ 389 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARY 389 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc
Confidence 45567777776555444444333322 10 122222 2223 366777777777632 222221222222211
Q ss_pred CCchhHHHHhcCchHHHHhhhccC----CHHHHHHHHHHHHhhh----hccchHHHHHHhchHHHHHHHhcC----CCHH
Q 006669 465 LDENKIIIGASGAIPALVDLLQNG----STRGRKDAATALFNLC----IYMGNKGRAVRAGIISALLKMLTD----SRNC 532 (636)
Q Consensus 465 ~~~~~~~i~~~g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~----~~~~n~~~lv~~g~v~~Lv~lL~~----~~~~ 532 (636)
.+. ..+..+.+++.+. ++..+..|+.++++|. ...+.+...+....++.|.+.|.. .+..
T Consensus 390 Pt~--------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 390 PTE--------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred CCH--------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 111 3456666776643 3456666666666664 333222222333466777766632 2333
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc-C--CCHHHHHHHHHHHHHhhccChH
Q 006669 533 MVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR-T--GLPRNKENAAAILLSLCKRDTE 591 (636)
Q Consensus 533 ~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~--~s~~~ke~A~~~L~~L~~~~~~ 591 (636)
-+-.++.+|.|+... ..++.+..++. . .++..|-.|+.+|..+....++
T Consensus 462 ~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 462 EIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR 513 (574)
T ss_pred heeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch
Confidence 334456666655441 23455555554 2 3468888999999887754443
No 338
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=54.84 E-value=1.4e+02 Score=25.72 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=52.4
Q ss_pred HhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 006669 515 RAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582 (636)
Q Consensus 515 ~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 582 (636)
..+.+..|++-+..++....+.++..|..|..+|.+...+.+-|++.-|-++=...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35677778888877777789999999999999999999999999988866665555565555444443
No 339
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=54.55 E-value=41 Score=30.77 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCC-ChH---HHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTTD-DVM---TQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s~-d~~---~~e~Av~aL~nLs~ 423 (636)
..++..|-+.|.++++.++..|+..|-.+.++. +.-+..+....++..|..++.+. ... +++.++..|...+.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999876 44456666667888899988643 333 78888888877764
No 340
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.14 E-value=2.2e+02 Score=31.73 Aligned_cols=225 Identities=14% Similarity=0.041 Sum_probs=118.9
Q ss_pred cCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHH
Q 006669 404 TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGAS-GAIPAL 481 (636)
Q Consensus 404 ~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~L 481 (636)
.+++...+.-|+..|.|++..-..+..-...-.+..++.-|.++ +.++...|..+|..+...-.+....--- .+.-.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 34566778889999999887522222222333456666666555 6788888888888776543333222111 333445
Q ss_pred HhhhccCCHHHHHHHHHHHHhhhhccchHH--HHHH--hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH--
Q 006669 482 VDLLQNGSTRGRKDAATALFNLCIYMGNKG--RAVR--AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV-- 555 (636)
Q Consensus 482 v~LL~~~~~~~k~~A~~aL~nL~~~~~n~~--~lv~--~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~-- 555 (636)
..+..+.+++.+.+|..+...|+...+... .+.+ .+...+++-.+.+.++.+ ..|+......|.-.-++++..
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l~rke~~~~ 426 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNLVRKELYHL 426 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchhHHHHHHHH
Confidence 566777788899998888888876655433 3333 122233444455555533 345555544444222222211
Q ss_pred ---------------------hc-CcHHHHHHHHc-------CCC-HHHHHHHHHHHHHhhcc-ChHHHHHHHHcCChHH
Q 006669 556 ---------------------KA-STIPVLIVLLR-------TGL-PRNKENAAAILLSLCKR-DTENLACISRLGAVIP 604 (636)
Q Consensus 556 ---------------------~~-g~i~~Lv~lL~-------~~s-~~~ke~A~~~L~~L~~~-~~~~~~~i~~~G~i~~ 604 (636)
+. ...+-+..++. +.+ +.+++.|+..--+..-+ .++.+..+-..-....
T Consensus 427 ~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ 506 (533)
T KOG2032|consen 427 FQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSS 506 (533)
T ss_pred HhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Confidence 10 01122222221 122 23343333333222221 1122222222224566
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 605 LTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 605 L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
|..+-+..-+.+++.|..++..+.+
T Consensus 507 ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 507 LSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHccCCCchhHHHHHHHhhhHhh
Confidence 7777778889999999998887654
No 341
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.95 E-value=1e+02 Score=35.74 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=72.1
Q ss_pred hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHH
Q 006669 434 AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA 513 (636)
Q Consensus 434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~l 513 (636)
+|.+..+++-..+.+..+|.+.+.+|.-++....-...-.-.+....+...+.+..+.++..|+.+|..+-..+.+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 34455555555667889999999999988763222222333456677777788888999999999998886432110
Q ss_pred HHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhh
Q 006669 514 VRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEA 550 (636)
Q Consensus 514 v~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~ 550 (636)
+..++..++.++.. ++++++..|+ .+++-++..
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsT 194 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNST 194 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCccc
Confidence 12356677788854 7888877665 455544443
No 342
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=53.50 E-value=52 Score=29.86 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=55.1
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhcC-C-HHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKSG-T-ERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~g-~-~~~k~kA~~lL~~l~ 628 (636)
++..|-+-|.++++..+..|+.+|-.+..+.+. ...++...+.+..|..++... + +.+++++..++..-.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999888654 556777888999999988763 3 348898888877654
No 343
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=51.84 E-value=3.8e+02 Score=29.81 Aligned_cols=179 Identities=13% Similarity=0.188 Sum_probs=96.7
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhccC-----hhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCc
Q 006669 353 AIEALVRKLSSR-SVEERRAAVAEIRSLSKRS-----TDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYE 425 (636)
Q Consensus 353 ~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~-----~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~ 425 (636)
.+..++..++.. ..+.+..|+..|..+...+ +++...| +..++..|+. .+...++.|+.+|..+..+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~i-----L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEI-----LLLLLEVLSDSEDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHH-----HHHHHHHHccchhhHHHHHHHHHHHHHHHhc
Confidence 455666666654 5677888999888776554 2222222 3457777775 67888999999999988754
Q ss_pred chHHHHHH--hCChHHHHHHHhcCcHHHHHHHH-HHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHh
Q 006669 426 NNKGLIML--AGAIPSIVQILRAGSMEARENAA-ATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN 502 (636)
Q Consensus 426 ~~k~~I~~--~G~I~~Lv~lL~~~~~e~~~~Aa-~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~n 502 (636)
..+ +.+ .-+|..+++.-++...++...|. .++.-++..+.... |..+..++...+...-..++..+..
T Consensus 362 ~~~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 362 PAR--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTK 432 (516)
T ss_pred hHh--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHH
Confidence 322 211 12344444444444443333333 33333433332211 1222233333333222233333444
Q ss_pred hhhccchHHHHHH--hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 503 LCIYMGNKGRAVR--AGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 503 L~~~~~n~~~lv~--~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
|+..-. ...+.. ..+.|.+++--.+.+..++..|+.+|..+..
T Consensus 433 l~e~l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 433 LFERLS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHhhcC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 432111 122211 4578888888888888888888888876544
No 344
>PRK14707 hypothetical protein; Provisional
Probab=51.47 E-value=7.4e+02 Score=33.11 Aligned_cols=271 Identities=14% Similarity=0.070 Sum_probs=134.6
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHH-HhhhCcchHH
Q 006669 353 AIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAIL-NLSIYENNKG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~-nLs~~~~~k~ 429 (636)
.|..+++-++. ++......|+..|...-.+...- .+-.+.-.|...++.|+. .+...-.+|+.+|. .|+.+...+.
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l-~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~ 284 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADESRL-RNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRK 284 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHH-HHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence 46666666653 22233444555555433333333 333344456666666653 55556666666665 3544444444
Q ss_pred HHHHhCChHHHHHHHh-cCc-HHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc-CCHHHHHHHHHHHHh-hhh
Q 006669 430 LIMLAGAIPSIVQILR-AGS-MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN-GSTRGRKDAATALFN-LCI 505 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~-~~~-~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~-~~~~~k~~A~~aL~n-L~~ 505 (636)
.+-..+ +...+.-|. -.+ ...+..|..+-..|..+.+-+..+- .-.+...+.-|.. .+......|+.+|.. |+.
T Consensus 285 al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 285 ALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred hcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 332222 222233232 233 4444444455455655443332221 1222233333332 234455566666654 444
Q ss_pred ccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHH-HHhcChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHH
Q 006669 506 YMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILS-VLASNPEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAIL 582 (636)
Q Consensus 506 ~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~-~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L 582 (636)
.++-+..+ +.-.|..+++-|+. ++......|...|+ .+..+++-+..+-. ..|..++.-|.. ....+...|+..|
T Consensus 363 d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 363 DPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP-QGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred CHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 44444433 33455566666654 55556666666664 66777777777644 445555554443 4455556677777
Q ss_pred HHhhccChHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhh
Q 006669 583 LSLCKRDTENLACISRLGAVIPLTELTKSG-TERAKRKATSLLEHLR 628 (636)
Q Consensus 583 ~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~ 628 (636)
..-..++.+-++.+--.++...|-.+.+=. ++..++.|..+...|.
T Consensus 441 A~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 441 AGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 665556777776665455555555555443 3444444444444443
No 345
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.14 E-value=64 Score=36.35 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=63.5
Q ss_pred hchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhccChHHH
Q 006669 516 AGIISALLKM-LTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAILLSLCKRDTENL 593 (636)
Q Consensus 516 ~g~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~ 593 (636)
.|+|..|+.. +++.+++++..|+.+|.-+|-. +...++..+++|.. .++.+|-..+-+|.--|.+.+...
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec--------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 4577788887 6778999999999999877764 23566777777764 467888777778877777665432
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 594 ACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 594 ~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
. +..|-.|+.+.++-+|+.|.-++.++
T Consensus 622 a-------~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 622 A-------TDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred H-------HHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 2 23333444455555555554444433
No 346
>PF04641 Rtf2: Rtf2 RING-finger
Probab=50.63 E-value=15 Score=37.60 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=30.7
Q ss_pred cccCccchhhccCCeec-CCCchhhhHHHHHHHcCC
Q 006669 257 DFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCG 291 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~ 291 (636)
-++|+||++.+.+||+. .-|+-|....|-.|+-..
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 47899999999999864 679999999999998643
No 347
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.23 E-value=5.5e+02 Score=31.22 Aligned_cols=232 Identities=16% Similarity=0.153 Sum_probs=122.6
Q ss_pred HHHHHHHHhc------C--CCHHHHHHHHHHHHHHhcc---ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHh
Q 006669 353 AIEALVRKLS------S--RSVEERRAAVAEIRSLSKR---STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNL 421 (636)
Q Consensus 353 ~i~~Lv~~L~------s--~~~~~~~~Al~~L~~La~~---~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nL 421 (636)
.++++++-|. . .++..+..|+..+..++.. .... +...+.-.++.+...++++-...+..|++.+...
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPY-KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCch-HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 4556666665 1 2344455677776666521 1111 2233444577778888888888999999999999
Q ss_pred hh-CcchHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCc-hhHHHHhc--CchHHHHhhhccCCHHHHHHH
Q 006669 422 SI-YENNKGLIMLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDE-NKIIIGAS--GAIPALVDLLQNGSTRGRKDA 496 (636)
Q Consensus 422 s~-~~~~k~~I~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~--g~i~~Lv~LL~~~~~~~k~~A 496 (636)
+. +=.+.... ..++......|. +....++..|+-+|..+-++.+ +..++... +.++.|+.+.+.-.-+.....
T Consensus 490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 84 22222222 234566677777 5567899999999998766554 44555544 566677777665432222222
Q ss_pred HHHHHhhhhccch-HHHHHH--hchHHHHHHHhcC------CCHHHHHHHHHHHHHHhc---ChhhHHHHHh---cCcHH
Q 006669 497 ATALFNLCIYMGN-KGRAVR--AGIISALLKMLTD------SRNCMVDEALTILSVLAS---NPEAKIAIVK---ASTIP 561 (636)
Q Consensus 497 ~~aL~nL~~~~~n-~~~lv~--~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~---~~~~~~~i~~---~g~i~ 561 (636)
+..+- +...+. ....++ ........+.+.. .+.+-.-.|.++|..+.+ .-+....+.. ...+|
T Consensus 568 me~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22111 111211 111111 2244445555542 122222345555554433 2223333322 22345
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669 562 VLIVLLRTGLPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 562 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 589 (636)
.+-.+|.+.-...-+.+..+...++...
T Consensus 646 vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 646 VIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 5555565554556666777776665544
No 348
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.93 E-value=36 Score=31.15 Aligned_cols=70 Identities=24% Similarity=0.170 Sum_probs=55.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhcC-CHH---HHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKSG-TER---AKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~g-~~~---~k~kA~~lL~~l~ 628 (636)
++..|..-|.++++..+..|+.+|-.+..+.+. ....+.....+..|..++.+. +.. +++++..++....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 456777788889999999999999999988764 455666777889999988763 444 8999888887654
No 349
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=49.15 E-value=99 Score=35.84 Aligned_cols=131 Identities=11% Similarity=0.130 Sum_probs=86.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHH-HhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQI-LRAGSMEARENAAATLFSLSLLDENKIII 472 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 472 (636)
..+|.|...++..+..+|+.++..+-..+..-+ -..++.-.+|.|-.+ ++..+..++.+++.++..+. +.....
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKA 463 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHH
Confidence 457788888888999999999999998887322 233444556666665 34457888999999998887 111111
Q ss_pred HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCC
Q 006669 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~ 529 (636)
.-..-+.++..-.+..++......+.+..++.....+...++...++|.++.+...+
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 111233444444445577777777777777766555545555667888888876543
No 350
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.02 E-value=19 Score=38.56 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=29.0
Q ss_pred CCcccCccchhhc---cCCeecCCCchhhhHHHHHHHc
Q 006669 255 PADFLCPISLELM---RDPVIVATGQTYERSYIQRWID 289 (636)
Q Consensus 255 p~~f~CPis~~~m---~dPv~~~~G~t~~r~~I~~w~~ 289 (636)
..-|.|.||.+-. .+-+.+||+|.||++|...|++
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 3458999998765 3456799999999999999985
No 351
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.86 E-value=93 Score=35.31 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=73.0
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669 393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII 472 (636)
Q Consensus 393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 472 (636)
+|.+..+++-+.+.|..++...+.+|.-++..-..-....-.|.+..|.+-+-...+.+|..|..+|..+-....|-.-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 3677888888889999999999999998886444333444566677777766667788999999999887433222111
Q ss_pred HhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccch
Q 006669 473 GASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGN 509 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n 509 (636)
.....|+.++++. +.+++.. +|.|+...+..
T Consensus 169 ---~~~n~l~~~vqnDPS~EVRr~---allni~vdnsT 200 (885)
T COG5218 169 ---RIVNLLKDIVQNDPSDEVRRL---ALLNISVDNST 200 (885)
T ss_pred ---HHHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCc
Confidence 1223566777754 4566664 45566544443
No 352
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=47.74 E-value=80 Score=26.77 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669 519 ISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE 591 (636)
Q Consensus 519 v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 591 (636)
....+..+.++...++..++..|..|....+ ...+...+++..+...|+...+-+--+|+..|..|+...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3445666778888899999999999988766 11222235667777888888899999999999999986665
No 353
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=47.46 E-value=17 Score=38.00 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=42.4
Q ss_pred CCCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHH
Q 006669 253 IIPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQ 319 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~ 319 (636)
...+=+-||||.+.|.=|.. =++||..|-+|=. .-...||.|+.++.+. -+++..++++.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~~---R~~amEkV~e~ 104 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGNI---RCRAMEKVAEA 104 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCccccccccH---HHHHHHHHHHh
Confidence 34556899999999999988 4679998888733 2356799999888632 33444444443
No 354
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=4.7e+02 Score=29.29 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhhCcchHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSIYENNKGL 430 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~~~~k~~ 430 (636)
+.+..+.+..++++...+..|++.|.+.+..-++....-.. -.+..++.-|. ..+.+++-.++.+|.-+.....++.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~- 335 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD- 335 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc-
Confidence 35666777778888888999999999998764443332221 23444555443 3557888888888877765333222
Q ss_pred HHHhCChHH---HHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH--Hhc--CchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669 431 IMLAGAIPS---IVQILRAGSMEARENAAATLFSLSLLDENKIII--GAS--GAIPALVDLLQNGSTRGRKDAATALFNL 503 (636)
Q Consensus 431 I~~~G~I~~---Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i--~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL 503 (636)
.+.+.++. +..+..+.+++++.+|...+..|+.....+.++ .+. +...+|+..+.+.++.+- .|+......
T Consensus 336 -l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~ 413 (533)
T KOG2032|consen 336 -LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRT 413 (533)
T ss_pred -hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHh
Confidence 12333333 334456678899999988888886554333322 221 344556666676666433 355555554
Q ss_pred hh
Q 006669 504 CI 505 (636)
Q Consensus 504 ~~ 505 (636)
|.
T Consensus 414 c~ 415 (533)
T KOG2032|consen 414 CY 415 (533)
T ss_pred cC
Confidence 43
No 355
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=44.43 E-value=15 Score=39.22 Aligned_cols=37 Identities=27% Similarity=0.557 Sum_probs=26.3
Q ss_pred CeecCCCchhhh-----HHHHHHHcC------------CCCCCCCCCcccccCC
Q 006669 270 PVIVATGQTYER-----SYIQRWIDC------------GNVTCPKTQQKLEHLT 306 (636)
Q Consensus 270 Pv~~~~G~t~~r-----~~I~~w~~~------------~~~~cP~~~~~l~~~~ 306 (636)
|..-+|++-||| +|+.+||.+ |..+||.||.++.-.+
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 344577777765 789999853 3457999999876544
No 356
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.02 E-value=5.9e+02 Score=30.15 Aligned_cols=206 Identities=17% Similarity=0.159 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC---cchHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY---ENNKG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~---~~~k~ 429 (636)
....+...++++....+..|... +...+|-+- .-.+..|+.+.+.....-...++.+|-.|.++ |+-|-
T Consensus 197 d~k~l~siiSsGT~~DkitA~~L---lvqesPvh~-----lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKL 268 (988)
T KOG2038|consen 197 DAKWLYSIISSGTLTDKITAMTL---LVQESPVHN-----LKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKL 268 (988)
T ss_pred hHHHHHHHHhcCcchhhhHHHHH---hhcccchhH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhh
Confidence 35667777888877777666543 333333221 23456777777665444444555555555442 22122
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN 509 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n 509 (636)
..+..-.+..|. +....-+.-..|.. +..-++.-..+|..|..+-.+.=+.++..|+..+++|..+.+.
T Consensus 269 k~f~qrp~~~l~----~~~~~~k~Ll~Wyf-------E~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE 337 (988)
T KOG2038|consen 269 KYFSQRPLLELT----NKRLRDKILLMWYF-------EHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE 337 (988)
T ss_pred HHHhhChhhhcc----ccccccceehHHHH-------HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH
Confidence 222211110000 00000001111111 1111222234677777776666688999999999999877765
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHH-hcChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhh
Q 006669 510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVL-ASNPEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLSLC 586 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L-a~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~ 586 (636)
.... .+..||.-|.++...+...|...|.+| +.||.-+..+ +..+..++... +.+.+=+|+-.|..+.
T Consensus 338 qE~~----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 338 QENN----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV-----IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHH----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh-----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 4433 466688888888888888888777766 5577655444 34555556544 3555667777776543
No 357
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=43.81 E-value=11 Score=43.26 Aligned_cols=65 Identities=17% Similarity=0.383 Sum_probs=47.0
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHH--cCCCCCCCCCCcccccCCcccchhHHHHHHH
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWI--DCGNVTCPKTQQKLEHLTLTPNYVLRSLISQ 319 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~--~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~ 319 (636)
..+..||||.+...+|+.+.|-|.||+.|+-.-| ..+...||+|................+++++
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence 4566799999999999999999999999987654 3445679999865544444333334444543
No 358
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=43.17 E-value=11 Score=38.71 Aligned_cols=26 Identities=12% Similarity=0.497 Sum_probs=19.0
Q ss_pred cccCccchhhcc---CCeecCCCchhhhH
Q 006669 257 DFLCPISLELMR---DPVIVATGQTYERS 282 (636)
Q Consensus 257 ~f~CPis~~~m~---dPv~~~~G~t~~r~ 282 (636)
.|.||+|.+.|. ....=++||+||.+
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 489999999984 23445668888766
No 359
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=42.31 E-value=11 Score=45.91 Aligned_cols=44 Identities=23% Similarity=0.524 Sum_probs=37.7
Q ss_pred CCcccCccchhhcc-CCeecCCCchhhhHHHHHHHcCCCCCCCCCC
Q 006669 255 PADFLCPISLELMR-DPVIVATGQTYERSYIQRWIDCGNVTCPKTQ 299 (636)
Q Consensus 255 p~~f~CPis~~~m~-dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~ 299 (636)
-..|.||||+++|+ ---+.-|||-||-.|+.-|... +..||+|.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 34569999999998 4567899999999999999985 67899986
No 360
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.95 E-value=1.5e+02 Score=33.82 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=51.7
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 516 AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 516 ~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
+|.+..+++-+.+.+..++..++.+|+.+..+-.-....+..|.+..|.+-+....+.+|..|+.+|..+-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 35666666666667888888899999888876655555566677777777776667788888888876553
No 361
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=39.79 E-value=22 Score=39.18 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=46.4
Q ss_pred hhhccCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 483 DLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 483 ~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
.+....+++.+..|..++.+++.+.+||.+.+. ...-..+++++..+.+++-+.+..+++.+-.
T Consensus 335 ~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 335 SLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 334456899999999999999999999887665 4455667777766666666666666655543
No 362
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=39.62 E-value=17 Score=38.60 Aligned_cols=43 Identities=14% Similarity=0.464 Sum_probs=35.0
Q ss_pred cccCccchhhc--cCC--eecCCCchhhhHHHHHHHc-CCCCCCCCCC
Q 006669 257 DFLCPISLELM--RDP--VIVATGQTYERSYIQRWID-CGNVTCPKTQ 299 (636)
Q Consensus 257 ~f~CPis~~~m--~dP--v~~~~G~t~~r~~I~~w~~-~~~~~cP~~~ 299 (636)
++.|-.|+|.+ +|- --+||.|.|--+|.+.++. .+..+||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 57899999987 332 2489999999999999985 4567899997
No 363
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=39.33 E-value=5.2e+02 Score=27.88 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhc---cCCHHHHHHHHHHHHhhhhccch-------------HH
Q 006669 450 EARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQ---NGSTRGRKDAATALFNLCIYMGN-------------KG 511 (636)
Q Consensus 450 e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~---~~~~~~k~~A~~aL~nL~~~~~n-------------~~ 511 (636)
..+..|+..|..|+...+ ..+... +.+..++.-.. +.+++.|..|+..+..|+..... -.
T Consensus 226 TrR~AA~dfl~~L~~~~~--~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFE--KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp SHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CcHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 345677778888864311 111111 22333222111 24678888888888888755422 22
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 582 (636)
.+...-++|-|. -=.+..+-++..|+..+......-. ++.+. +++|.++..|.+++.-+...|+.++
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 333333444443 1113566677788888877766422 22222 4799999999999888888887654
No 364
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=39.22 E-value=4.1e+02 Score=33.86 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=65.0
Q ss_pred CChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHH
Q 006669 435 GAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRA 513 (636)
Q Consensus 435 G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~l 513 (636)
+.+..++.+|..+...+|..|..+|.++...+... ......-.++-..+.+.+..+++.|+..+.....+. +--.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 34667777777777888888888888887665421 111122233334455667778888888777543322 22111
Q ss_pred HHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669 514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 514 v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 547 (636)
.-..+.+-+.++.-.++..++.+|..+|..
T Consensus 893 ----yY~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 893 ----YYDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred ----HHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 122344455567778888899999888874
No 365
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=38.93 E-value=37 Score=32.64 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=32.7
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc-chhHHHHHHHHHhh
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP-NYVLRSLISQWCTM 323 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~w~~~ 323 (636)
+..|.||-|..-+ ||+-. . +.++.||.|+.+|...+-.. ...+++.|.+.-..
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~eA-----~-~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFDEA-----M-EYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcEE----------eHHHH-----h-hcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 5788999886443 33322 1 24799999999987643321 23556666665444
No 366
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=38.86 E-value=2.6e+02 Score=28.89 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=49.0
Q ss_pred CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH--HHHHhchHHHHHH----Hhc--------CCCHHHHHHHHHHH
Q 006669 476 GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG--RAVRAGIISALLK----MLT--------DSRNCMVDEALTIL 541 (636)
Q Consensus 476 g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~--~lv~~g~v~~Lv~----lL~--------~~~~~~~~~Al~~L 541 (636)
-.+|+++.++.+.++..|..++.+|..+...-+... .+.+.|..+.+-+ .+. +.+..+...|..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 478999999999999999999999999876443322 2445664444333 333 34556777788888
Q ss_pred HHHhc
Q 006669 542 SVLAS 546 (636)
Q Consensus 542 ~~La~ 546 (636)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77754
No 367
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=38.62 E-value=4.5e+02 Score=26.88 Aligned_cols=215 Identities=12% Similarity=0.072 Sum_probs=118.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhc--CcHHHHHHHHHHHHHccCCCchhHHHHhc
Q 006669 399 LVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRA--GSMEARENAAATLFSLSLLDENKIIIGAS 475 (636)
Q Consensus 399 Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~ 475 (636)
|=..|.++|..++..|+..|.+... -+... ....-+..|+....+ .+......++..+..|.......... ..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence 4456788899999999998887654 22221 112224555555433 35555555566666654322211111 00
Q ss_pred CchHHHHhhhc--cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHH
Q 006669 476 GAIPALVDLLQ--NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKI 552 (636)
Q Consensus 476 g~i~~Lv~LL~--~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~ 552 (636)
..+..+.+-.. .-....+......|..|..+......-...+.+..+++.+.. .++.-.-.+..++..+...-+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-- 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-- 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence 12222222211 224567777778887776543222222234688888888865 6788777888877777653221
Q ss_pred HHHhcCcHHHHHHHHcC-------C---CH--HHHHHHHHHHH-HhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 006669 553 AIVKASTIPVLIVLLRT-------G---LP--RNKENAAAILL-SLCKRDTENLACISRLGAVIPLTELTKSGTERAKRK 619 (636)
Q Consensus 553 ~i~~~g~i~~Lv~lL~~-------~---s~--~~ke~A~~~L~-~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~k 619 (636)
......+.+.+.. . +| -+++.-...|. .+++ ++... .-+++.|++=+.++.+.+|.-
T Consensus 158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~fa-----~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPLFA-----PFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHhhH-----HHHHHHHHHHHcCCCcHHHHH
Confidence 2233444444431 1 11 13343334443 3443 33322 236788888888888889988
Q ss_pred HHHHHHHhhc
Q 006669 620 ATSLLEHLRK 629 (636)
Q Consensus 620 A~~lL~~l~~ 629 (636)
+..+|..+..
T Consensus 228 ~L~tL~~c~~ 237 (262)
T PF14500_consen 228 SLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHH
Confidence 8888876654
No 368
>PF14353 CpXC: CpXC protein
Probab=38.10 E-value=19 Score=32.43 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=30.2
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcC--CCCCCCCCCcccc
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDC--GNVTCPKTQQKLE 303 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~--~~~~cP~~~~~l~ 303 (636)
+.+||-|+..+.=.+-..-.-..+....++-++. ...+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3579999998865554333225666666666642 2357999998653
No 369
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=37.39 E-value=4.3e+02 Score=26.35 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=79.2
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHh
Q 006669 356 ALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLA 434 (636)
Q Consensus 356 ~Lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~ 434 (636)
.|+..+ +..+++.+...+..|..++.++..+... .+..|..+...++...+.-+...+..+....+ +..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f---- 73 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF---- 73 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----
Confidence 344433 4567888999999999999865222222 23455666665555555555666666554221 111
Q ss_pred CChHHHHHH--Hh------cC--cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh-ccCCHHHHHHHHHHHHhh
Q 006669 435 GAIPSIVQI--LR------AG--SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL-QNGSTRGRKDAATALFNL 503 (636)
Q Consensus 435 G~I~~Lv~l--L~------~~--~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL 503 (636)
+.+..++.. ++ ++ ..+.....+..+..++....+ --...++.+-..| ++.++..+..++.+|..|
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 223333322 11 11 345555556677777666554 1124667777788 677888888999999999
Q ss_pred h
Q 006669 504 C 504 (636)
Q Consensus 504 ~ 504 (636)
|
T Consensus 150 c 150 (234)
T PF12530_consen 150 C 150 (234)
T ss_pred H
Confidence 8
No 370
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=36.96 E-value=82 Score=26.82 Aligned_cols=57 Identities=7% Similarity=0.138 Sum_probs=40.3
Q ss_pred CCCccchhhHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 006669 32 NGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQASKRLLAV 97 (636)
Q Consensus 32 ~~~~~~rk~~~~l~rr~~ll~~l~eel~~~~~~~~~~~~~~~~~~~~~~l~eL~~al~~ak~Ll~~ 97 (636)
+.+.+.|+|-..|++++.-..++++.+...+ .....-......-...-++|+.|+..
T Consensus 6 ~~~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~---------Vlt~ee~e~I~~~~t~~~qAr~Lld~ 62 (94)
T cd08329 6 DDLSLIRKNRMALFQHLTSVLPILDSLLSAN---------VITEQEYDVIKQKTQTPLQARELIDT 62 (94)
T ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHHHHHcC---------CCCHHHHHHHHcCCChHHHHHHHHHH
Confidence 3456889999999999988999999998664 11323333333333345889999888
No 371
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.87 E-value=75 Score=29.58 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH
Q 006669 519 ISALLKMLTDSRNCMVDEALTILSV 543 (636)
Q Consensus 519 v~~Lv~lL~~~~~~~~~~Al~~L~~ 543 (636)
|.+|+++|.+.+..+...|..+|.+
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5556666655555555555555543
No 372
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.14 E-value=7e+02 Score=28.41 Aligned_cols=129 Identities=20% Similarity=0.132 Sum_probs=70.9
Q ss_pred hHHHHHHHhcC----cHHHHHHHHHHHHHcc----CCCchhHHHHhcCchHHHHhhhcc----CCHHHHHHHHHHHHhhh
Q 006669 437 IPSIVQILRAG----SMEARENAAATLFSLS----LLDENKIIIGASGAIPALVDLLQN----GSTRGRKDAATALFNLC 504 (636)
Q Consensus 437 I~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls----~~~~~~~~i~~~g~i~~Lv~LL~~----~~~~~k~~A~~aL~nL~ 504 (636)
+..+.++++++ .+.++..|.-++.++. ...+..........++.|.+.|.. ++...+...+.+|.|+-
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 44555666543 3455555665555553 222211111112356666666543 34555667788888875
Q ss_pred hccchHHHHHHhchHHHHHHHhc-C--CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHH
Q 006669 505 IYMGNKGRAVRAGIISALLKMLT-D--SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTG--LPRNKENA 578 (636)
Q Consensus 505 ~~~~n~~~lv~~g~v~~Lv~lL~-~--~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A 578 (636)
... .++.|...+. + .+..++-.|+.+|..++. ++. .+-+.|+.+.... ++++|-.|
T Consensus 475 ~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 475 HPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred Chh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHHH
Confidence 422 4555566654 2 456788899999998875 332 2234555656543 45666655
Q ss_pred HHHHH
Q 006669 579 AAILL 583 (636)
Q Consensus 579 ~~~L~ 583 (636)
..+|.
T Consensus 537 ~~~lm 541 (574)
T smart00638 537 VLVLM 541 (574)
T ss_pred HHHHH
Confidence 55553
No 373
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=36.04 E-value=29 Score=29.83 Aligned_cols=27 Identities=19% Similarity=0.591 Sum_probs=22.5
Q ss_pred CCCchhhhHHHHHHHcCCCCCCCCCCcc
Q 006669 274 ATGQTYERSYIQRWIDCGNVTCPKTQQK 301 (636)
Q Consensus 274 ~~G~t~~r~~I~~w~~~~~~~cP~~~~~ 301 (636)
.|+|.|--.||.+|++. +..||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 57899999999999985 5789987653
No 374
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=35.95 E-value=9.2e+02 Score=29.74 Aligned_cols=139 Identities=19% Similarity=0.107 Sum_probs=71.4
Q ss_pred cCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC----C----ch-hHHHHh
Q 006669 404 TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL----D----EN-KIIIGA 474 (636)
Q Consensus 404 ~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~----~----~~-~~~i~~ 474 (636)
.+-|..+++.+..+|.+|+... ......+.+++++.-.-+++...+.-..-+..++... . .. ...|..
T Consensus 554 ~HWd~~irelaa~aL~~Ls~~~---pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 554 CHWDVKIRELAAYALHKLSLTE---PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred ccccHHHHHHHHHHHHHHHHhh---HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 3468899999999999998732 1233457788888877666665554333222222111 1 00 011111
Q ss_pred c-CchHHHHhh-hccCC-HHHHHHHHHHHHhhhhccc-hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 475 S-GAIPALVDL-LQNGS-TRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 475 ~-g~i~~Lv~L-L~~~~-~~~k~~A~~aL~nL~~~~~-n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
. ..++++... +..|- .-.+...+..+.+++.++. -....+..+.-..+.+.+...+ .+++.|..++..+++
T Consensus 631 l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 0 123333222 22221 1223334455556654432 2333444444444555554444 778888888888876
No 375
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=35.76 E-value=76 Score=29.56 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 560 IPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 560 i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
|.+|+++|.+.++.....|+.+|.+.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 99999999888888888999999763
No 376
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.43 E-value=5e+02 Score=26.55 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=96.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-------ChhhHHHHHhcCCHHHHHHhhcCCCh----HHHHHHHHHHHHh
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKR-------STDNRIIIADAGAIPVLVNLLTTDDV----MTQEHAVTAILNL 421 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-------~~~~r~~i~e~g~i~~Lv~lL~s~d~----~~~e~Av~aL~nL 421 (636)
..+-+++.+.++.. ...++..|..|... +.++|-.+.=.+.+|.++.-+..+++ .....++..|..+
T Consensus 65 lq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~ 142 (262)
T PF14225_consen 65 LQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV 142 (262)
T ss_pred HHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence 34445666766543 23355555555432 22244444444567777777665551 2334455666666
Q ss_pred hhCcchHHHHHHhCChHHHHHHHhcCc----HHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHH
Q 006669 422 SIYENNKGLIMLAGAIPSIVQILRAGS----MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAA 497 (636)
Q Consensus 422 s~~~~~k~~I~~~G~I~~Lv~lL~~~~----~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~ 497 (636)
+.... ...+..++.....+. .+-...++..|.+--. +++ ....+..|+.+|.++.+-.+...+
T Consensus 143 a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 143 AEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHHHHH
Confidence 53111 122333333333321 2222333333332211 111 123566789999999999999999
Q ss_pred HHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 498 TALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 498 ~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
..|..+-..-+.+.. ...+.+.+|.+++..+ ....|+.+|.++..
T Consensus 210 ~iL~~ll~~~d~~~~-~~~dlispllrlL~t~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 210 QILKVLLPHVDMRSP-HGADLISPLLRLLQTD---LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHhccccCCCC-cchHHHHHHHHHhCCc---cHHHHHHHHHHHHh
Confidence 999988765554433 5566999999999654 34577777766543
No 377
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=35.38 E-value=1.5e+02 Score=31.44 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHccCCCchhHHHHhcC--chHHHHhhhccC---CHHHHHHHHHHHHhhhhccchHHHHHH-------hc
Q 006669 450 EARENAAATLFSLSLLDENKIIIGASG--AIPALVDLLQNG---STRGRKDAATALFNLCIYMGNKGRAVR-------AG 517 (636)
Q Consensus 450 e~~~~Aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~LL~~~---~~~~k~~A~~aL~nL~~~~~n~~~lv~-------~g 517 (636)
.+|..|..++.++.........+...+ .+..|+++++-+ +...+..|+.+|..++....-...++. +|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 355667788877777777666776664 999999999865 568899999999999886654444433 45
Q ss_pred hHHHHHHH
Q 006669 518 IISALLKM 525 (636)
Q Consensus 518 ~v~~Lv~l 525 (636)
+++.+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66665554
No 378
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=35.34 E-value=12 Score=32.14 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=28.7
Q ss_pred CCCCCCCCcccCccchhhccCCee--cCCCchhhhHHHH
Q 006669 249 PDVLIIPADFLCPISLELMRDPVI--VATGQTYERSYIQ 285 (636)
Q Consensus 249 ~~~~~~p~~f~CPis~~~m~dPv~--~~~G~t~~r~~I~ 285 (636)
.....+.++-.|++|++.+.++++ -|+||.|-..|+.
T Consensus 70 ~~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 70 SRSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 344567777889999999977665 6999988887764
No 379
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=35.11 E-value=17 Score=27.17 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=11.3
Q ss_pred CCCCcccCccchh
Q 006669 253 IIPADFLCPISLE 265 (636)
Q Consensus 253 ~~p~~f~CPis~~ 265 (636)
.+|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5799999999974
No 380
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=34.61 E-value=15 Score=34.26 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=17.6
Q ss_pred CcccCccchhhccCCeecCC
Q 006669 256 ADFLCPISLELMRDPVIVAT 275 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~ 275 (636)
++.+||||++.-.+.|++-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999999766
No 381
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.80 E-value=3.9e+02 Score=27.17 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=45.8
Q ss_pred HhchHHHHHHHhcCCCHH--------HHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHH
Q 006669 515 RAGIISALLKMLTDSRNC--------MVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL--PRNKENAAAILLS 584 (636)
Q Consensus 515 ~~g~v~~Lv~lL~~~~~~--------~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s--~~~ke~A~~~L~~ 584 (636)
+..+.+.++++++.++.- +.+.--.+|+.++. |-+..|.+++.+.. .-+|..|..+|..
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~-----------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD-----------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC-----------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 455889999998654321 22233333333333 55777777777653 5677888888888
Q ss_pred hhccChHHHHHHHH
Q 006669 585 LCKRDTENLACISR 598 (636)
Q Consensus 585 L~~~~~~~~~~i~~ 598 (636)
+...++..+..+++
T Consensus 140 l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 140 LVHEGPISREEVIQ 153 (249)
T ss_pred HHHcCCCCHHHHHH
Confidence 88777766666544
No 382
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=33.75 E-value=59 Score=28.52 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHH
Q 006669 368 ERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQ 411 (636)
Q Consensus 368 ~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~ 411 (636)
.....++.+..|+. .|+.-..+++.|+++.|+.+|.+++..+.
T Consensus 62 dLd~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 62 DLDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 34567788888886 56777788899999999999999886653
No 383
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=33.64 E-value=52 Score=29.98 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=33.7
Q ss_pred cccCccchhhccC--Cee-cCCCc------hhhhHHHHHHHcCCCCCCCCCCccc
Q 006669 257 DFLCPISLELMRD--PVI-VATGQ------TYERSYIQRWIDCGNVTCPKTQQKL 302 (636)
Q Consensus 257 ~f~CPis~~~m~d--Pv~-~~~G~------t~~r~~I~~w~~~~~~~cP~~~~~l 302 (636)
..-|.||.+-..+ -|+ +++|. -||-.|+++|- .++...|--+..-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~-~~~~rDPfnR~I~ 79 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR-RERNRDPFNRNIK 79 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH-hhccCCCcccceE
Confidence 5679999998876 555 77776 48899999996 3467788765543
No 384
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=33.47 E-value=5e+02 Score=25.94 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCC-------------CH-H----HHHHHHHHHHHHhcChhhH
Q 006669 490 TRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS-------------RN-C----MVDEALTILSVLASNPEAK 551 (636)
Q Consensus 490 ~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~-------------~~-~----~~~~Al~~L~~La~~~~~~ 551 (636)
..-...++..+..|...+++...+.+.+.++.+.+.|... ++ . +...=...|..++.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4455566667777777777777777888888887777432 11 1 1122256788899999999
Q ss_pred HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChH-HHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVI-PLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~-~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
..+-+.+....+..+....+. .....-+|.+|=-.. .|-.. .|-+.+.+++..+|..|+..|+.+-+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 999889999999998876532 122222333331111 12222 34466788999999999999987643
No 385
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=33.18 E-value=1.9e+02 Score=31.03 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=56.8
Q ss_pred HHHHhhhcc-CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCC-CH-HHHHHHHHHHHHHhcChhhHHHHH
Q 006669 479 PALVDLLQN-GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS-RN-CMVDEALTILSVLASNPEAKIAIV 555 (636)
Q Consensus 479 ~~Lv~LL~~-~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~-~~-~~~~~Al~~L~~La~~~~~~~~i~ 555 (636)
..+++=+.. .+..++..++.-|..-|..+..+..+.+.|.+..+++.+.+. +. ...-.++.++..++.....-..+.
T Consensus 24 ~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~ 103 (361)
T PF07814_consen 24 EYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLL 103 (361)
T ss_pred HHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhh
Confidence 334444442 356788889889999889889999999999999999999653 33 233334455555555443333333
Q ss_pred hcCcHHHHHHHHc
Q 006669 556 KASTIPVLIVLLR 568 (636)
Q Consensus 556 ~~g~i~~Lv~lL~ 568 (636)
+.+....++.++.
T Consensus 104 ~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 104 DRDSLRLLLKLLK 116 (361)
T ss_pred chhHHHHHHHHhc
Confidence 3344444455554
No 386
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=33.16 E-value=2e+02 Score=34.33 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred HhccChhhHHHHHhcCCHHHHHHhhc--------CCChHHHHHHHHHHHHhhhCcchHHHHHHh--------CChHHHHH
Q 006669 379 LSKRSTDNRIIIADAGAIPVLVNLLT--------TDDVMTQEHAVTAILNLSIYENNKGLIMLA--------GAIPSIVQ 442 (636)
Q Consensus 379 La~~~~~~r~~i~e~g~i~~Lv~lL~--------s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~--------G~I~~Lv~ 442 (636)
+++..-...+-+...|++..++.+.. +.-.+....|+.+|.-+..-+..+..++.+ .+|..|+.
T Consensus 586 f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~ 665 (1516)
T KOG1832|consen 586 FVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILD 665 (1516)
T ss_pred hhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEee
Q ss_pred HHhcC----cHHHHHHHHHHHHHccCCC-chhHHHHhc-Cc--hHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHH
Q 006669 443 ILRAG----SMEARENAAATLFSLSLLD-ENKIIIGAS-GA--IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV 514 (636)
Q Consensus 443 lL~~~----~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~-g~--i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv 514 (636)
.-... +++.++.|+.+|-|+...+ +++..+... |. =..=..+=+.......++.+.-.++-...+
T Consensus 666 ~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~n------- 738 (1516)
T KOG1832|consen 666 AANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGN------- 738 (1516)
T ss_pred cccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcC-------
Q ss_pred HhchHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcH
Q 006669 515 RAGIISALLKMLTD-----SRNCMVDEALTILSVLASNPEAKIAIVKASTI 560 (636)
Q Consensus 515 ~~g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i 560 (636)
++|..|+++|.- ....++..|+.+|.-|+.++..|+.+...-.+
T Consensus 739 --dGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 739 --DGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLV 787 (1516)
T ss_pred --ccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
No 387
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=33.08 E-value=4.5e+02 Score=25.22 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=81.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh
Q 006669 396 IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA 474 (636)
Q Consensus 396 i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 474 (636)
++.++++..+.+..++..|+..+.-.... -++. .-++|.++.+..++++.++..|...+..+....+.-....-
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56677777788888999888888544320 0001 12578888888888999999999999999765543222111
Q ss_pred cCchHHHHhhhcc--CCHH--H---HHHHHHHHHhhhh-ccchHHHHHHhchHHHHHHHhcC--------CCHHHHHHHH
Q 006669 475 SGAIPALVDLLQN--GSTR--G---RKDAATALFNLCI-YMGNKGRAVRAGIISALLKMLTD--------SRNCMVDEAL 538 (636)
Q Consensus 475 ~g~i~~Lv~LL~~--~~~~--~---k~~A~~aL~nL~~-~~~n~~~lv~~g~v~~Lv~lL~~--------~~~~~~~~Al 538 (636)
..++..-.++-+. ++.. . ...-+..|+.+.. +..+|.+++ ..|++.+.. ....-....+
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~~~~~~~~~~~~~~l~~~~ 159 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDFDLTKLSSESSPSDLDFLL 159 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHhhccccccccchhHHHHHH
Confidence 1233332222211 1111 1 4455666777665 234455554 445555533 1334455666
Q ss_pred HHHHHHhcC
Q 006669 539 TILSVLASN 547 (636)
Q Consensus 539 ~~L~~La~~ 547 (636)
.+..||+.-
T Consensus 160 Fla~nLA~l 168 (187)
T PF12830_consen 160 FLAENLATL 168 (187)
T ss_pred HHHHHHhcC
Confidence 666777763
No 388
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=32.35 E-value=4.6e+02 Score=30.54 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=85.2
Q ss_pred HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Q 006669 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK 551 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~ 551 (636)
.+.+.+|.|+.|++..+..++.. .|.++-.+-+ --..+++.-++|.+..-+.+.++.+++.++..+..|+..-..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 34578899999999877666653 3444432222 2456677789999999999999999999999999888743322
Q ss_pred HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCC-hHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGA-VIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~-i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
......+..+-.+-.......+.+..-+|..+.... ...++.++ +.+...-+++.-..+|..+...+..-..+
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l----~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL----AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeeccccccc----chhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 111111222222211223445555544444443321 11112222 23333444455555666666666665555
Q ss_pred ccc
Q 006669 631 PQL 633 (636)
Q Consensus 631 ~~~ 633 (636)
...
T Consensus 478 ~~~ 480 (690)
T KOG1243|consen 478 FDQ 480 (690)
T ss_pred cch
Confidence 433
No 389
>PLN02189 cellulose synthase
Probab=32.16 E-value=31 Score=41.72 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=34.2
Q ss_pred ccCccchhhcc----CCeecCC---CchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 258 FLCPISLELMR----DPVIVAT---GQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 258 f~CPis~~~m~----dPv~~~~---G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
-.|+||++-.- .-++++| |--.||.|.+.=.++|+..||.|+.+..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 36999988641 2234555 4458999997667789999999988775
No 390
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=32.01 E-value=2.2e+02 Score=24.73 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=49.1
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhh---hc---CCHHHHHHHHHHHHHh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELT---KS---GTERAKRKATSLLEHL 627 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll---~~---g~~~~k~kA~~lL~~l 627 (636)
++..|.+-|.+.++..+-.|+.+|-.++.++++ ....+.....+..++.+. .. .+..+|+++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455666777778899999999999999988764 444566665565555431 11 2678899999888754
No 391
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=31.99 E-value=3.6e+02 Score=27.74 Aligned_cols=69 Identities=25% Similarity=0.217 Sum_probs=41.8
Q ss_pred ChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH--HHHhcCchHHHHhhhc------------cCCHHHHHHHHHHHH
Q 006669 436 AIPSIVQILRAGSMEARENAAATLFSLSLLDENKI--IIGASGAIPALVDLLQ------------NGSTRGRKDAATALF 501 (636)
Q Consensus 436 ~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~LL~------------~~~~~~k~~A~~aL~ 501 (636)
.+|+++.++.+.+++.+..++.+|..+...-.... .+.+.|..+.+-+.+. +.+...-..+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 57888889988899999999999998865332222 2334454444333222 223445555556666
Q ss_pred hhh
Q 006669 502 NLC 504 (636)
Q Consensus 502 nL~ 504 (636)
.|+
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 653
No 392
>PRK06424 transcription factor; Provisional
Probab=31.05 E-value=1.3e+02 Score=27.84 Aligned_cols=58 Identities=16% Similarity=0.021 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHh------hc--CCCCcccChhHHHHHHHhcCc
Q 006669 138 DISEEVQEQVVLARSQLKRATERYGSMNSRNFFHA------LS--QPLEKEVSITNHEVKAKANHV 195 (636)
Q Consensus 138 ~~s~ev~e~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~l~~~~~~~~~ 195 (636)
|+.++..+.++.+-..++.++....-..++++..+ ++ ...+..|+.+.+.+|++.||+
T Consensus 73 d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgv 138 (144)
T PRK06424 73 KASDEDLDIVEDYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGI 138 (144)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCC
Confidence 66777777778788888888888888899999877 11 123367899999999999998
No 393
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.27 E-value=1.4e+02 Score=26.40 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=33.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh
Q 006669 518 IISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK 556 (636)
Q Consensus 518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~ 556 (636)
+|+.|+.-|.+.+.+++..|+.+|...|..+...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 678899999999999999999999999998866666554
No 394
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=30.26 E-value=47 Score=29.10 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHH
Q 006669 494 KDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMV 534 (636)
Q Consensus 494 ~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~ 534 (636)
...+..+..|+..++--..+++.|+++.|+++|...+.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 44567788888888889999999999999999987766543
No 395
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=30.19 E-value=3.6e+02 Score=30.23 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=67.7
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH----HHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhccC-
Q 006669 516 AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK----IAIVKASTIPVLIVLLRT-GLPRNKENAAAILLSLCKRD- 589 (636)
Q Consensus 516 ~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~----~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~- 589 (636)
.++|..+++.+. .+.+.+--+.++. +..++.. +.+.+.+.|+.|+.+|.. .++..+.+|+.+|..+..-+
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456666666663 3334444344333 2223333 344567999999999974 46778889998887764321
Q ss_pred ------------hHHHHHHHHcCChHHHHHhhh--cCCHHHHHHHHHHHHHhhcc
Q 006669 590 ------------TENLACISRLGAVIPLTELTK--SGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 590 ------------~~~~~~i~~~G~i~~L~~Ll~--~g~~~~k~kA~~lL~~l~~~ 630 (636)
..-...+.....+..|+..+- .++.....-..-++..|++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 122334556677888887665 45555566666677777664
No 396
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=30.15 E-value=4.2e+02 Score=28.54 Aligned_cols=132 Identities=18% Similarity=0.115 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHHHHccCCCchhHHHHhc--C-chHHHHhhhccC--CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHH
Q 006669 448 SMEARENAAATLFSLSLLDENKIIIGAS--G-AIPALVDLLQNG--STRGRKDAATALFNLCIYMGNKGRAVRAGIISAL 522 (636)
Q Consensus 448 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g-~i~~Lv~LL~~~--~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~L 522 (636)
+.+...+|..+|..+-...+....+-.. . .+...+..+.++ +.......+++|. ... -..+++....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~Q~-f~~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLS---DQK-FSPKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cCC-CCCcccchhhHHHH
Confidence 4577788999998887666544444333 1 345555555544 2333333344333 211 12223333344444
Q ss_pred HHHh---cC--CCHHHHHHHHHHHHHHhcChhhHHHHHh-c-CcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 523 LKML---TD--SRNCMVDEALTILSVLASNPEAKIAIVK-A-STIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 523 v~lL---~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~-~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
+..+ .+ ++..+..+.+.++.+|...... .|.+ . --++.++..+-+....++..|..++..+
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 4443 22 5667888899999988874332 2332 2 3577777766666666777666666544
No 397
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=30.06 E-value=30 Score=32.57 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL 307 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 307 (636)
-+..|.||-|..-+ ||+=.. +.+++||.|+.+|...+-
T Consensus 106 ~~~~Y~Cp~c~~r~----------tf~eA~------~~~F~Cp~Cg~~L~~~dn 143 (158)
T TIGR00373 106 NNMFFICPNMCVRF----------TFNEAM------ELNFTCPRCGAMLDYLDN 143 (158)
T ss_pred CCCeEECCCCCcEe----------eHHHHH------HcCCcCCCCCCEeeeccC
Confidence 36788999876433 333222 147999999998865443
No 398
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=30.00 E-value=20 Score=26.39 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=8.2
Q ss_pred CCCCcccCccchh
Q 006669 253 IIPADFLCPISLE 265 (636)
Q Consensus 253 ~~p~~f~CPis~~ 265 (636)
.+|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5799999999864
No 399
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=29.90 E-value=2.4e+02 Score=29.80 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhhccchHHHHHHhc--hHHHHHHHhcC---CCHHHHHHHHHHHHHHhcChhhHHHHHh-------cCc
Q 006669 492 GRKDAATALFNLCIYMGNKGRAVRAG--IISALLKMLTD---SRNCMVDEALTILSVLASNPEAKIAIVK-------AST 559 (636)
Q Consensus 492 ~k~~A~~aL~nL~~~~~n~~~lv~~g--~v~~Lv~lL~~---~~~~~~~~Al~~L~~La~~~~~~~~i~~-------~g~ 559 (636)
.+..|+..+..+........++...+ .+.-|++++.. ....++..|+.+|..++........|.+ .|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 45566666666666666777888766 99999999964 4677888999999999885443333332 355
Q ss_pred HHHHHH
Q 006669 560 IPVLIV 565 (636)
Q Consensus 560 i~~Lv~ 565 (636)
++.+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 666654
No 400
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=29.86 E-value=1.1e+03 Score=30.42 Aligned_cols=147 Identities=20% Similarity=0.235 Sum_probs=79.1
Q ss_pred hCChHHHHHH----HhcCcHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669 434 AGAIPSIVQI----LRAGSMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 434 ~G~I~~Lv~l----L~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~ 508 (636)
...++.++.+ |++.++.++.-+......+-.. +. ..+...+..|+..+.+|+......|+.+|..|+..+
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~- 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN- 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc-
Confidence 3556666655 5667777777666554444222 22 123347788999998888877789999999998643
Q ss_pred hHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHH-HHHcCCCHHHHH----HHHHHH
Q 006669 509 NKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLI-VLLRTGLPRNKE----NAAAIL 582 (636)
Q Consensus 509 n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv-~lL~~~s~~~ke----~A~~~L 582 (636)
...+.. +..+..+++.+.+=+..=......+|..|+........-++.. +..++ +.|.+.+++.|. .|+.++
T Consensus 505 -~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~de-l~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 505 -PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDE-LHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp -HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHH-HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHH-HHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 233333 3455556666655444445667788887775321111111111 34444 355556666554 344455
Q ss_pred HHhhc
Q 006669 583 LSLCK 587 (636)
Q Consensus 583 ~~L~~ 587 (636)
..++.
T Consensus 583 ~~la~ 587 (1426)
T PF14631_consen 583 KHLAA 587 (1426)
T ss_dssp HHTT-
T ss_pred HHHHH
Confidence 55554
No 401
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.42 E-value=3.9e+02 Score=24.92 Aligned_cols=82 Identities=27% Similarity=0.314 Sum_probs=56.8
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH-hcC-cHHHHHH-HHcCC--CHHHHHHHHHHHHH
Q 006669 510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV-KAS-TIPVLIV-LLRTG--LPRNKENAAAILLS 584 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~-~~g-~i~~Lv~-lL~~~--s~~~ke~A~~~L~~ 584 (636)
-..+++....+.|.+.+.+.+..+...++.++..+... .+..+. +-+ .+..++. ++.+. +..-|+.+..++..
T Consensus 66 l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~ 143 (168)
T PF12783_consen 66 LINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE 143 (168)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 34566677888899988777788999999999999853 233332 222 3566665 66643 34678899999999
Q ss_pred hhccChHHHH
Q 006669 585 LCKRDTENLA 594 (636)
Q Consensus 585 L~~~~~~~~~ 594 (636)
+|. +|....
T Consensus 144 l~~-~p~~l~ 152 (168)
T PF12783_consen 144 LCK-DPQFLV 152 (168)
T ss_pred HHh-ChhHHH
Confidence 997 444433
No 402
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=4e+02 Score=31.46 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=78.9
Q ss_pred cCCHHHHHHhhcC--------CChHHHHHHHHHHHHhhh--C-cchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHH
Q 006669 393 AGAIPVLVNLLTT--------DDVMTQEHAVTAILNLSI--Y-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS 461 (636)
Q Consensus 393 ~g~i~~Lv~lL~s--------~d~~~~e~Av~aL~nLs~--~-~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~ 461 (636)
.|.++.++..|.. +++...+.|+..+.++.. . +..-.-+++.=.++.++..+++...-.+..|+.++..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4788999999932 224445667777776654 2 2223334454456677777788888889999999988
Q ss_pred ccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH
Q 006669 462 LSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR 515 (636)
Q Consensus 462 Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~ 515 (636)
++.+= +..-.-..+.+.....+++.+..+...|+-||..+-.+.....++.+
T Consensus 487 ~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 487 IEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 85432 22222224566666777887788889999999888776655444443
No 403
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.47 E-value=31 Score=35.13 Aligned_cols=42 Identities=26% Similarity=0.481 Sum_probs=32.6
Q ss_pred CcccCccchhhccCCeecCC----Cchhh----hHHHHHHHcCCCCCCCC
Q 006669 256 ADFLCPISLELMRDPVIVAT----GQTYE----RSYIQRWIDCGNVTCPK 297 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~----G~t~~----r~~I~~w~~~~~~~cP~ 297 (636)
.-++|-+|.|-+.|.=++.| +|.|| |.+|.+....|..+||.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 34999999999999877665 67777 66677766677777884
No 404
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.19 E-value=3.8e+02 Score=23.23 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhc------CCChHHHHHHHHHHHHh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLT------TDDVMTQEHAVTAILNL 421 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~------s~d~~~~e~Av~aL~nL 421 (636)
...+..|.+.|.+.++.++..|+..|..+.++.. .....+.....+..++++.. ..+..+++.+..++...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3568889999999999999999999999998643 34445555555555554311 12456677776665443
No 405
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=28.04 E-value=3.1e+02 Score=29.23 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC-------ChHHHHHHHHHHHHhhhCcc
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-------DVMTQEHAVTAILNLSIYEN 426 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~-------d~~~~e~Av~aL~nLs~~~~ 426 (636)
...+.+.+.+.+...+..|+..|+.=+. - ...+|.++.++... +.......+..+..|..++.
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~tD~g----l------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRTDPG----L------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCCC----c------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 3445555555666666666655433221 0 13577787777532 34445555566666666555
Q ss_pred hHHHHHHhCChHHHHHHHh----------cCcHHHHHHHHHHHHHccC
Q 006669 427 NKGLIMLAGAIPSIVQILR----------AGSMEARENAAATLFSLSL 464 (636)
Q Consensus 427 ~k~~I~~~G~I~~Lv~lL~----------~~~~e~~~~Aa~~L~~Ls~ 464 (636)
..-..--.-.+|.++..+- ...+..|..|+.+|..++.
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4332222336677776652 1236899999999998863
No 406
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=27.51 E-value=4.4e+02 Score=24.13 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHH-HHHhhcC---CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPV-LVNLLTT---DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~-Lv~lL~s---~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|-+.|.+ .++.++..|+..|-.+.+... .-...|+...++.. |++++.. .+..++...+..+.+.+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4678999999984 588899999999999988643 33556777788887 9999863 234788888888888765
No 407
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=27.04 E-value=37 Score=32.54 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=30.9
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc-chhHHHHHHHH
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP-NYVLRSLISQW 320 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~w 320 (636)
+..|.||.|.--+ +|+..+ . .+++||.|+..+...+..+ ...+.+.+.+.
T Consensus 111 ~~~y~C~~~~~r~----------sfdeA~-----~-~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l 161 (176)
T COG1675 111 NNYYVCPNCHVKY----------SFDEAM-----E-LGFTCPKCGEDLEEYDSSEEIEELESELDEL 161 (176)
T ss_pred CCceeCCCCCCcc----------cHHHHH-----H-hCCCCCCCCchhhhccchHHHHHHHHHHHHH
Confidence 5678999876543 555553 3 2489999999886654433 23344444444
No 408
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=26.84 E-value=37 Score=31.46 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHH-cCCCCCCCCCCcccccC
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWI-DCGNVTCPKTQQKLEHL 305 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~-~~~~~~cP~~~~~l~~~ 305 (636)
...|.||-|+..+ .-.-..... ..|.+.||.|+..+...
T Consensus 97 ~~~Y~Cp~C~~~y------------~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPNCQSKY------------TFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcCCCCEe------------eHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 5678999766544 221112221 13458899999988543
No 409
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.82 E-value=37 Score=39.81 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCc
Q 006669 254 IPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQ 300 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~ 300 (636)
|-+.-.|..|.-.+.=|++ -.|||.|-+.|.+ .+...||+|.-
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3344467777777666876 8999999999977 56788999965
No 410
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.22 E-value=75 Score=33.77 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=52.8
Q ss_pred HHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--CCChHHHHHHHHHHHHhhh-CcchHHHHHH
Q 006669 371 AAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT--TDDVMTQEHAVTAILNLSI-YENNKGLIML 433 (636)
Q Consensus 371 ~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~--s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~ 433 (636)
+..+.|..|+..++++...+.+.|+++.+++-.. ..+|-+++..+.++.+|.. +.+|++.|.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 3566888899889999999999999999887543 3568999999999999998 6788888765
No 411
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.16 E-value=1.1e+03 Score=27.79 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=83.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHH-HhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQI-LRAGSMEARENAAATLFSLSLLDENKIII 472 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 472 (636)
.-|.-|+.+|.+.+....+.+-..+..+...+... -.+..||+. +..++. .++.+|..+-. +..|.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t~s~----~~~~il~~~~~-P~~K~-- 70 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLSTNSQ----RALEILVGVQE-PHDKH-- 70 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhcCcH----HHHHHHHhcCC-ccHHH--
Confidence 34677999999999888888887776554322111 124556654 444543 24445544321 11121
Q ss_pred HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch-HHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHHHHHhc
Q 006669 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN-KGRAVRAGIISALLKMLT-DSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~ 546 (636)
.+..|=+.+. .+..+..++..|..+...++. --.+++...++.|++.|. +.+..++..|+.+|..|--
T Consensus 71 ----~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 71 ----LFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred ----HHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 2222333333 456788899999998876654 566777889999999885 4677777788777776644
No 412
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.02 E-value=1.2e+03 Score=27.67 Aligned_cols=142 Identities=19% Similarity=0.179 Sum_probs=81.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHccCC--Cc-hhH---HHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669 439 SIVQILRAGSMEARENAAATLFSLSLL--DE-NKI---IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR 512 (636)
Q Consensus 439 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~-~~~---~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~ 512 (636)
.|.+-|+-.+.+++.+|+..++++-.. ++ .+. .+.+ .-..-|..||.+.-+.++..|..-+....+ --..
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fWe 253 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS---KFWE 253 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHHH
Confidence 344455667899999999999998433 21 222 2332 345678888988877777666554433221 1122
Q ss_pred HHHhchHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 513 AVRAGIISALLKMLTD-----SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 513 lv~~g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
++-..++..|+..+.+ ...+++-....-|-.+..+|..-..+- -++|.|-..|+..+.++|-.++.+|..+=
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 2223333333333322 233444445555666666655443331 24566666677788899988888887664
No 413
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=24.99 E-value=3.9e+02 Score=35.11 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=78.9
Q ss_pred CCChHHHHHHHHHHHHhhhCcchHHHH----HHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchH
Q 006669 405 TDDVMTQEHAVTAILNLSIYENNKGLI----MLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIP 479 (636)
Q Consensus 405 s~d~~~~e~Av~aL~nLs~~~~~k~~I----~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~ 479 (636)
+.+..+...|+..|..|+..--.+..+ .....+.++..++.+. +.++++..+.++.++...... .| + .+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~--nI-k-SGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN--NV-K-SGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh--hh-h-cCcH
Confidence 456677888899898988721112221 1245778888888754 689999999999987543221 11 2 2456
Q ss_pred HHHhhhc----cCCHHHHHHHHHHHHhhhhccch------HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 006669 480 ALVDLLQ----NGSTRGRKDAATALFNLCIYMGN------KGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVL 544 (636)
Q Consensus 480 ~Lv~LL~----~~~~~~k~~A~~aL~nL~~~~~n------~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L 544 (636)
.+..++. +.++.....|-..+..+....-. ...+ ...|..|.++... .+..+.-.|+..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 6666665 33566666666666655432110 1111 2345555555543 2455666777778766
No 414
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.52 E-value=3.7e+02 Score=23.87 Aligned_cols=103 Identities=24% Similarity=0.271 Sum_probs=60.8
Q ss_pred CchHHHHhhhccCCHHHHHHHHHHHHhhhhc-----c----chHHHHHH-------hchHHHHHHHhcCCC----HHHHH
Q 006669 476 GAIPALVDLLQNGSTRGRKDAATALFNLCIY-----M----GNKGRAVR-------AGIISALLKMLTDSR----NCMVD 535 (636)
Q Consensus 476 g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~-----~----~n~~~lv~-------~g~v~~Lv~lL~~~~----~~~~~ 535 (636)
..++.++.+++. ++......+..|..+... + ..|..-+. ..++..+.+.+.... ..+..
T Consensus 26 ~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 466777777766 455555666665554311 0 11222111 234445555554322 78888
Q ss_pred HHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 006669 536 EALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582 (636)
Q Consensus 536 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 582 (636)
.++.++....... .-..+.+...++.+..+|.. +..++.|+.+|
T Consensus 105 ~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWISWI-PIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 9999999888843 33455566789999998844 44477777765
No 415
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.87 E-value=2.6e+02 Score=26.88 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=51.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669 518 IISALLKMLTDSRNCMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE 591 (636)
Q Consensus 518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 591 (636)
.++.++++..+.+..++..|+.++..+.. +|. .++|.|+-+..+.++.++..|...+..+....+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 45566777777888888888888887665 221 2688899988888899999999999999876553
No 416
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=23.84 E-value=51 Score=25.00 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=7.2
Q ss_pred ccCccchhhc
Q 006669 258 FLCPISLELM 267 (636)
Q Consensus 258 f~CPis~~~m 267 (636)
..||+|+.-=
T Consensus 5 i~CP~CgnKT 14 (55)
T PF14205_consen 5 ILCPICGNKT 14 (55)
T ss_pred EECCCCCCcc
Confidence 5799998543
No 417
>PRK00420 hypothetical protein; Validated
Probab=23.50 E-value=39 Score=29.87 Aligned_cols=28 Identities=21% Similarity=0.384 Sum_probs=18.0
Q ss_pred ccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 258 FLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 258 f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
-.||.|+-.+.. .. .|...||.|+..+.
T Consensus 24 ~~CP~Cg~pLf~---lk---------------~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 24 KHCPVCGLPLFE---LK---------------DGEVVCPVHGKVYI 51 (112)
T ss_pred CCCCCCCCccee---cC---------------CCceECCCCCCeee
Confidence 459999865522 12 35677899987553
No 418
>PLN02436 cellulose synthase A
Probab=22.89 E-value=57 Score=39.67 Aligned_cols=44 Identities=23% Similarity=0.383 Sum_probs=33.5
Q ss_pred cCccchhhc-----cCCeecCC---CchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 259 LCPISLELM-----RDPVIVAT---GQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 259 ~CPis~~~m-----~dPv~~~~---G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
.|.||++-. -|| +++| |--.||.|.+.=.++|+..||.|+.+..
T Consensus 38 iCqICGD~Vg~t~dGe~-FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEP-FVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCE-EEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 699998764 233 4555 4458999997667789999999988775
No 419
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.17 E-value=8 Score=30.97 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=21.2
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
+..||.|.+.|. ..+|+.+|-.|-..+-. ...||.|+++|.-
T Consensus 1 e~~CP~C~~~L~----~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELE----WQGGHYHCEACQKDYKK--EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEE----EETTEEEETTT--EEEE--EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccE----EeCCEEECcccccccee--cccCCCcccHHHH
Confidence 457999988762 23367777776433221 3569999998864
No 420
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=22.15 E-value=7.7e+02 Score=31.83 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=71.6
Q ss_pred CCHHHHHH----hhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh
Q 006669 394 GAIPVLVN----LLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK 469 (636)
Q Consensus 394 g~i~~Lv~----lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~ 469 (636)
...+.++. +|.+.++.+++-+......+-..-+. .....+|..|+..+.+|+..-...|..+|..|+.. +.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~--~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK--NP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--cH
Confidence 44555554 45678888888888877777663321 22334677888888888766667899999999853 33
Q ss_pred HHHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 470 IIIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 470 ~~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
..+... ..+..+++.+.+-+....+.....|..|+...
T Consensus 506 ~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 506 SELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 444443 67778888888777766677788888887654
No 421
>PHA02862 5L protein; Provisional
Probab=21.97 E-value=66 Score=29.61 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred CccchhhccCCeecCCCc-----hhhhHHHHHHHcC-CCCCCCCCCcccccCCcccchhHHHHHHHHHh
Q 006669 260 CPISLELMRDPVIVATGQ-----TYERSYIQRWIDC-GNVTCPKTQQKLEHLTLTPNYVLRSLISQWCT 322 (636)
Q Consensus 260 CPis~~~m~dPv~~~~G~-----t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~ 322 (636)
|=||.+-=.|. .-||.- -.-++|+++|++. +..+||.|+.++..... .+...+|..
T Consensus 5 CWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~------yKpf~kW~~ 66 (156)
T PHA02862 5 CWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT------YVSFKKWNW 66 (156)
T ss_pred EEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc------cccHHHhhc
Confidence 66666553232 345422 2458899999974 55679999988754322 234566753
No 422
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.95 E-value=4.4e+02 Score=24.14 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=52.0
Q ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHH-HHHhhhc---CCHHHHHHHHHHHHHhhc
Q 006669 559 TIPVLIVLLRT-GLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIP-LTELTKS---GTERAKRKATSLLEHLRK 629 (636)
Q Consensus 559 ~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~-L~~Ll~~---g~~~~k~kA~~lL~~l~~ 629 (636)
++..|-+-|.. .++.....|+.+|-.+..+.+. ...++.....+.- |+.++.. ....++.+...+++....
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45566666654 4788888899999888888764 4557777888886 8988863 235889888888876653
No 423
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=21.93 E-value=94 Score=29.17 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=32.2
Q ss_pred cccCccchhhccCCeecCCCc-----hhhhHHHHHHHcC-CCCCCCCCCccccc
Q 006669 257 DFLCPISLELMRDPVIVATGQ-----TYERSYIQRWIDC-GNVTCPKTQQKLEH 304 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~-----t~~r~~I~~w~~~-~~~~cP~~~~~l~~ 304 (636)
+..|=||.+-. ++..-||.- ..-++|+++|.+. +...||.|+.++.-
T Consensus 8 ~~~CRIC~~~~-~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEY-DVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCC-CCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 44577887664 244456633 3468999999975 45679999988754
No 424
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=21.70 E-value=8.3e+02 Score=26.01 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=55.8
Q ss_pred chHHHHhhhccC-------CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC----------CCHHHHHHHHH
Q 006669 477 AIPALVDLLQNG-------STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD----------SRNCMVDEALT 539 (636)
Q Consensus 477 ~i~~Lv~LL~~~-------~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~----------~~~~~~~~Al~ 539 (636)
.+|.++..+.++ +.......+..+..|..++.-.-...=+-.+|.++..+.. .+..+++.|..
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 445555555432 2334444555666666555433332223467777766522 34578999999
Q ss_pred HHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CH-HHHHHHHHHHHHhh
Q 006669 540 ILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LP-RNKENAAAILLSLC 586 (636)
Q Consensus 540 ~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~-~~ke~A~~~L~~L~ 586 (636)
+|..+|..-.....-+...++..+.+.+... .+ ...=-|+..|..|.
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 9999987322111111222334555555432 22 22444555555443
No 425
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.63 E-value=62 Score=35.89 Aligned_cols=63 Identities=17% Similarity=0.047 Sum_probs=37.4
Q ss_pred HHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 566 LLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 566 lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
+....+++.++.|..++.+++......+..+-....-..+++++....+++-+.|..++..+-
T Consensus 336 ~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 336 LCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 334567888888888888887654333323333444455566666666666555555555443
No 426
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.61 E-value=92 Score=25.01 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=26.5
Q ss_pred chhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhH
Q 006669 277 QTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313 (636)
Q Consensus 277 ~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~l 313 (636)
+|||..|-+.-+ +..||.|+-.|......|.-.|
T Consensus 29 cTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 29 CTFCADCAENRL---HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred eehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHH
Confidence 499999988766 4689999988877777775443
No 427
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=20.98 E-value=60 Score=32.32 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=32.9
Q ss_pred cccCccch-hhccCCee----cC-CCchhhhHHHHHHHcCCCCCCC--CCCc
Q 006669 257 DFLCPISL-ELMRDPVI----VA-TGQTYERSYIQRWIDCGNVTCP--KTQQ 300 (636)
Q Consensus 257 ~f~CPis~-~~m~dPv~----~~-~G~t~~r~~I~~w~~~~~~~cP--~~~~ 300 (636)
+-.||||. +..-+|.+ -| |=|..|-+|.-+.|..|...|| -|+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 44699995 45556654 23 7788999999999999999999 4543
No 428
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=69 Score=34.82 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=24.3
Q ss_pred cccCccch-hhccC---CeecCCCchhhhHHHHHHHc
Q 006669 257 DFLCPISL-ELMRD---PVIVATGQTYERSYIQRWID 289 (636)
Q Consensus 257 ~f~CPis~-~~m~d---Pv~~~~G~t~~r~~I~~w~~ 289 (636)
...|+||. +.+.. ..+.-|||-||..|..+++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 46799998 33322 12466999999999999986
No 429
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=20.65 E-value=2.2e+02 Score=29.52 Aligned_cols=55 Identities=25% Similarity=0.394 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC--------------hhhHHHHHhcCCHHHHHHhhc
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS--------------TDNRIIIADAGAIPVLVNLLT 404 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~--------------~~~r~~i~e~g~i~~Lv~lL~ 404 (636)
....+..+++.|.+.+...+..|++.|..++.+. ..|-..+.+.|+++.|+.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567889999999999999999999999887542 244556778899999998885
No 430
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.51 E-value=2.4e+02 Score=24.82 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=30.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHH
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACI 596 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i 596 (636)
+|+.|+.-|...++.+...|..+|...|... .....+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~ 45 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYL 45 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHH
Confidence 5788999999999999999999999999865 444443
No 431
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.28 E-value=60 Score=39.52 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=33.1
Q ss_pred cCccchhhc-----cCCeecCC---CchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 259 LCPISLELM-----RDPVIVAT---GQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 259 ~CPis~~~m-----~dPv~~~~---G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
.|.||++-. -|| ++.| |--.||.|.+-=.++|+..||.|+.+..
T Consensus 19 iCqICGD~vg~~~~Ge~-FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEP-FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCE-EEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 599998754 334 3555 4448999997667789999999987765
Done!