Query 006669
Match_columns 636
No_of_seqs 430 out of 2561
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 05:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.2E-30 4.2E-35 276.8 23.5 264 367-631 47-336 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 2.5E-30 8.6E-35 284.7 22.3 281 353-634 3-365 (457)
3 3l6x_A Catenin delta-1; cateni 100.0 1.2E-29 4.1E-34 283.4 25.7 282 352-634 48-389 (584)
4 3nmz_A APC variant protein; pr 100.0 2.1E-29 7.3E-34 275.3 23.9 261 370-631 166-452 (458)
5 1xm9_A Plakophilin 1; armadill 100.0 5E-29 1.7E-33 274.3 26.1 285 350-636 42-456 (457)
6 3l6x_A Catenin delta-1; cateni 100.0 6.1E-28 2.1E-32 269.7 27.9 283 350-634 88-481 (584)
7 3now_A UNC-45 protein, SD10334 100.0 2E-27 6.9E-32 273.8 27.8 284 347-630 416-738 (810)
8 3nmw_A APC variant protein; AR 100.0 1.2E-27 4.1E-32 253.9 21.8 245 349-593 70-340 (354)
9 3nmz_A APC variant protein; pr 100.0 3E-27 1E-31 258.3 25.1 281 349-629 67-408 (458)
10 3ul1_B Importin subunit alpha- 99.9 1.6E-26 5.5E-31 257.8 27.1 280 350-629 98-387 (510)
11 3now_A UNC-45 protein, SD10334 99.9 1.2E-26 4.2E-31 267.3 25.2 283 350-633 493-786 (810)
12 3tpo_A Importin subunit alpha- 99.9 4.4E-26 1.5E-30 255.4 28.9 280 350-629 117-406 (529)
13 3ul1_B Importin subunit alpha- 99.9 6.3E-26 2.2E-30 253.0 27.7 279 353-631 58-347 (510)
14 4b8j_A Importin subunit alpha- 99.9 6.8E-25 2.3E-29 245.1 31.5 280 351-630 116-401 (528)
15 4hxt_A De novo protein OR329; 99.9 5.3E-25 1.8E-29 220.3 26.8 238 353-590 3-244 (252)
16 3tpo_A Importin subunit alpha- 99.9 1.3E-24 4.4E-29 243.5 30.1 282 349-630 159-450 (529)
17 4hxt_A De novo protein OR329; 99.9 1.1E-24 3.8E-29 217.9 26.5 238 394-631 2-243 (252)
18 4b8j_A Importin subunit alpha- 99.9 2.2E-24 7.4E-29 241.0 30.6 279 352-630 74-359 (528)
19 4db8_A Armadillo-repeat protei 99.9 4.1E-25 1.4E-29 222.1 22.3 235 353-587 13-251 (252)
20 4db8_A Armadillo-repeat protei 99.9 1.3E-24 4.4E-29 218.5 24.2 236 394-629 12-251 (252)
21 1wa5_B Importin alpha subunit; 99.9 9.6E-24 3.3E-28 236.1 31.6 279 351-629 129-412 (530)
22 1wa5_B Importin alpha subunit; 99.9 2.4E-23 8.2E-28 232.9 33.3 278 353-630 88-371 (530)
23 2jdq_A Importin alpha-1 subuni 99.9 3.2E-23 1.1E-27 225.5 31.6 277 352-629 64-347 (450)
24 2jdq_A Importin alpha-1 subuni 99.9 7.5E-23 2.6E-27 222.6 30.6 278 352-630 107-391 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 4.7E-23 1.6E-27 229.1 26.1 278 350-630 57-340 (529)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-22 3.9E-27 226.1 29.2 280 351-632 100-388 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 1.2E-22 4E-27 232.9 27.2 279 350-629 12-336 (644)
28 3tt9_A Plakophilin-2; cell adh 99.9 2.6E-23 8.8E-28 206.8 17.1 194 353-547 9-230 (233)
29 2z6h_A Catenin beta-1, beta-ca 99.9 8.1E-22 2.8E-26 225.9 29.6 280 351-632 97-385 (644)
30 3tt9_A Plakophilin-2; cell adh 99.9 1.3E-22 4.3E-27 201.9 17.5 193 395-588 9-230 (233)
31 2z6g_A B-catenin; FULL-length, 99.9 1.7E-21 5.8E-26 227.9 26.3 271 353-631 116-391 (780)
32 3opb_A SWI5-dependent HO expre 99.9 1E-21 3.5E-26 222.5 22.5 283 348-630 372-729 (778)
33 2z6g_A B-catenin; FULL-length, 99.9 2E-21 6.7E-26 227.3 25.7 277 350-629 190-472 (780)
34 4db6_A Armadillo repeat protei 99.9 3.4E-21 1.2E-25 188.1 22.0 195 393-587 11-209 (210)
35 4db6_A Armadillo repeat protei 99.9 3.9E-21 1.3E-25 187.7 22.1 196 352-547 12-210 (210)
36 3opb_A SWI5-dependent HO expre 99.8 3.7E-19 1.3E-23 201.7 21.9 274 353-628 335-682 (778)
37 1xqr_A HSPBP1 protein; armadil 99.8 3.2E-18 1.1E-22 176.9 23.0 221 408-628 54-286 (296)
38 2kr4_A Ubiquitin conjugation f 99.8 2.7E-20 9.2E-25 155.7 5.8 74 252-326 9-82 (85)
39 2kre_A Ubiquitin conjugation f 99.8 4.5E-20 1.5E-24 159.0 6.6 74 251-325 23-96 (100)
40 1wgm_A Ubiquitin conjugation f 99.8 5.7E-20 1.9E-24 157.7 7.2 76 251-327 16-92 (98)
41 2f42_A STIP1 homology and U-bo 99.8 4.9E-20 1.7E-24 174.1 6.7 76 252-327 101-176 (179)
42 1xqr_A HSPBP1 protein; armadil 99.8 1.1E-17 3.9E-22 172.7 24.8 235 352-587 28-287 (296)
43 1t1h_A Gspef-atpub14, armadill 99.7 5.5E-18 1.9E-22 139.4 6.5 75 253-327 4-78 (78)
44 2c2l_A CHIP, carboxy terminus 99.7 2.3E-17 8E-22 169.1 12.3 77 251-327 202-278 (281)
45 2yu4_A E3 SUMO-protein ligase 99.7 1.5E-17 5.3E-22 141.7 4.5 73 253-325 3-84 (94)
46 3m62_A Ubiquitin conjugation f 99.5 1.8E-15 6.1E-20 173.3 5.6 75 251-326 885-960 (968)
47 2bay_A PRE-mRNA splicing facto 99.5 8.8E-16 3E-20 119.4 1.2 55 257-312 3-58 (61)
48 3grl_A General vesicular trans 99.5 7.8E-13 2.7E-17 146.6 23.4 277 351-631 20-344 (651)
49 3ztg_A E3 ubiquitin-protein li 99.5 5.9E-14 2E-18 119.0 6.6 75 252-326 8-85 (92)
50 3grl_A General vesicular trans 99.4 6.8E-11 2.3E-15 131.2 25.0 278 351-628 59-393 (651)
51 3fl2_A E3 ubiquitin-protein li 99.3 3.4E-13 1.2E-17 120.9 4.0 70 254-323 49-119 (124)
52 3htk_C E3 SUMO-protein ligase 99.3 3.1E-13 1.1E-17 133.4 3.8 71 253-323 177-251 (267)
53 1z6u_A NP95-like ring finger p 99.3 1E-12 3.4E-17 121.7 4.1 69 254-322 75-144 (150)
54 3ltm_A Alpha-REP4; protein eng 99.3 3.3E-10 1.1E-14 110.2 19.7 190 350-590 17-206 (211)
55 1oyz_A Hypothetical protein YI 99.2 3.8E-10 1.3E-14 114.7 20.6 224 353-627 24-248 (280)
56 3ltj_A Alpharep-4; protein eng 99.2 8.8E-10 3E-14 106.2 20.7 187 349-586 11-197 (201)
57 3ltm_A Alpha-REP4; protein eng 99.2 5.5E-10 1.9E-14 108.5 19.0 188 393-631 18-205 (211)
58 2y43_A E3 ubiquitin-protein li 99.2 8.2E-12 2.8E-16 107.2 4.9 70 254-324 19-89 (99)
59 3l11_A E3 ubiquitin-protein li 99.2 5.2E-12 1.8E-16 111.6 2.2 70 253-322 11-87 (115)
60 2ckl_A Polycomb group ring fin 99.2 1.3E-11 4.5E-16 107.7 4.3 69 253-322 11-84 (108)
61 3lrq_A E3 ubiquitin-protein li 99.2 1.2E-11 4E-16 106.4 3.7 70 254-323 19-89 (100)
62 3ltj_A Alpharep-4; protein eng 99.2 2E-09 7E-14 103.7 20.0 185 394-629 14-198 (201)
63 2egp_A Tripartite motif-contai 99.1 2.2E-12 7.4E-17 105.8 -1.3 64 253-316 8-77 (79)
64 2ecw_A Tripartite motif-contai 99.1 9.6E-12 3.3E-16 103.3 1.8 64 253-316 15-83 (85)
65 2ckl_B Ubiquitin ligase protei 99.1 2.1E-11 7.2E-16 114.8 3.7 69 254-322 51-121 (165)
66 1jm7_B BARD1, BRCA1-associated 99.1 2E-11 7E-16 108.1 3.1 68 254-324 19-87 (117)
67 3hct_A TNF receptor-associated 99.1 2.2E-11 7.7E-16 108.0 3.3 68 253-320 14-81 (118)
68 1oyz_A Hypothetical protein YI 99.1 7.7E-09 2.6E-13 105.0 22.4 201 391-629 20-221 (280)
69 2ecv_A Tripartite motif-contai 99.1 1.6E-11 5.5E-16 101.9 1.5 64 253-316 15-83 (85)
70 2ecy_A TNF receptor-associated 99.1 7.5E-11 2.6E-15 93.2 5.2 54 253-306 11-64 (66)
71 2yur_A Retinoblastoma-binding 99.1 8.1E-11 2.8E-15 95.3 4.8 52 252-303 10-63 (74)
72 4ayc_A E3 ubiquitin-protein li 99.1 5.9E-11 2E-15 108.3 3.9 64 255-321 51-114 (138)
73 2csy_A Zinc finger protein 183 99.1 7.3E-11 2.5E-15 97.3 3.8 59 253-313 11-69 (81)
74 1jm7_A BRCA1, breast cancer ty 99.0 7.3E-11 2.5E-15 103.5 3.7 68 255-322 19-88 (112)
75 4fdd_A Transportin-1; heat rep 99.0 1.2E-09 4.2E-14 128.6 15.0 271 352-629 174-471 (852)
76 2ysl_A Tripartite motif-contai 99.0 1.7E-10 6E-15 92.9 4.9 55 252-306 15-71 (73)
77 2djb_A Polycomb group ring fin 99.0 2.9E-10 9.9E-15 91.4 5.4 57 253-310 11-68 (72)
78 1rmd_A RAG1; V(D)J recombinati 99.0 9.2E-11 3.1E-15 103.7 2.4 67 253-319 19-86 (116)
79 1g25_A CDK-activating kinase a 99.0 3E-10 1E-14 89.3 4.7 55 256-310 2-61 (65)
80 4fdd_A Transportin-1; heat rep 99.0 3.8E-09 1.3E-13 124.4 16.3 272 353-630 129-430 (852)
81 2ysj_A Tripartite motif-contai 99.0 3.3E-10 1.1E-14 88.5 4.4 46 253-298 16-63 (63)
82 3hcs_A TNF receptor-associated 98.9 2.4E-10 8.4E-15 108.0 3.3 68 253-320 14-81 (170)
83 3knv_A TNF receptor-associated 98.9 1.6E-10 5.3E-15 105.7 0.8 66 253-318 27-101 (141)
84 1b3u_A Protein (protein phosph 98.9 5.6E-08 1.9E-12 108.5 20.4 266 353-629 282-548 (588)
85 1b3u_A Protein (protein phosph 98.9 3E-08 1E-12 110.7 17.7 263 353-629 325-587 (588)
86 3ng2_A RNF4, snurf, ring finge 98.8 9.1E-10 3.1E-14 88.1 2.9 58 253-311 6-70 (71)
87 4gmo_A Putative uncharacterize 98.8 2.4E-08 8.1E-13 114.8 15.1 195 434-628 33-257 (684)
88 2ecj_A Tripartite motif-contai 98.8 2.5E-09 8.6E-14 81.8 4.4 46 253-298 11-58 (58)
89 1ibr_B P95, importin beta-1 su 98.8 2.5E-08 8.4E-13 107.9 13.0 272 353-630 129-438 (462)
90 2d8t_A Dactylidin, ring finger 98.8 1.5E-09 5.1E-14 87.0 2.2 51 254-305 12-62 (71)
91 2ct2_A Tripartite motif protei 98.8 5E-09 1.7E-13 87.4 5.1 53 253-305 11-69 (88)
92 2vgl_B AP-2 complex subunit be 98.8 4.2E-07 1.4E-11 102.6 22.0 263 352-627 121-417 (591)
93 1e4u_A Transcriptional repress 98.7 7.4E-09 2.5E-13 84.4 5.2 55 253-307 7-65 (78)
94 2xeu_A Ring finger protein 4; 98.7 2.1E-09 7.2E-14 83.9 1.9 55 256-311 2-63 (64)
95 4gmo_A Putative uncharacterize 98.7 6.2E-08 2.1E-12 111.4 14.6 191 395-586 35-257 (684)
96 2ea6_A Ring finger protein 4; 98.7 6.7E-09 2.3E-13 82.3 3.6 51 253-304 11-68 (69)
97 2ect_A Ring finger protein 126 98.6 2.8E-08 9.6E-13 80.9 5.0 57 253-310 11-70 (78)
98 2vgl_B AP-2 complex subunit be 98.6 5.6E-07 1.9E-11 101.6 17.1 253 352-629 13-268 (591)
99 4ap4_A E3 ubiquitin ligase RNF 98.5 3E-08 1E-12 89.2 2.6 55 255-310 5-66 (133)
100 1qgr_A Protein (importin beta 98.5 1.9E-06 6.6E-11 100.9 18.7 273 352-630 172-480 (876)
101 2ecm_A Ring finger and CHY zin 98.5 5.8E-08 2E-12 73.2 3.0 47 256-303 4-54 (55)
102 2ep4_A Ring finger protein 24; 98.5 1.1E-07 3.7E-12 76.6 4.6 52 253-305 11-65 (74)
103 2ecn_A Ring finger protein 141 98.5 2.7E-08 9.2E-13 79.2 0.8 52 253-306 11-62 (70)
104 1qgr_A Protein (importin beta 98.5 4.1E-06 1.4E-10 98.1 19.8 272 353-630 129-438 (876)
105 1chc_A Equine herpes virus-1 r 98.5 7.4E-08 2.5E-12 76.1 3.3 48 256-304 4-52 (68)
106 1bor_A Transcription factor PM 98.4 3.7E-08 1.3E-12 74.9 1.3 46 255-304 4-49 (56)
107 1w63_A Adapter-related protein 98.4 6.4E-06 2.2E-10 93.5 19.5 250 352-628 107-378 (618)
108 1w63_A Adapter-related protein 98.4 1.2E-05 4.1E-10 91.2 21.6 250 353-629 143-414 (618)
109 1iym_A EL5; ring-H2 finger, ub 98.4 1.7E-07 5.7E-12 70.7 3.5 47 255-302 3-53 (55)
110 2l0b_A E3 ubiquitin-protein li 98.4 2.5E-07 8.4E-12 77.8 4.2 50 254-304 37-89 (91)
111 1v87_A Deltex protein 2; ring- 98.4 2.4E-07 8.1E-12 81.2 4.3 50 255-304 23-94 (114)
112 2bpt_A Importin beta-1 subunit 98.4 4.7E-06 1.6E-10 97.4 16.7 270 353-629 370-668 (861)
113 3b2a_A TON_1937, putative unch 98.3 4.3E-05 1.5E-09 74.0 19.7 220 351-581 32-255 (265)
114 2bpt_A Importin beta-1 subunit 98.3 1.1E-05 3.9E-10 94.1 19.1 273 352-630 134-441 (861)
115 2kiz_A E3 ubiquitin-protein li 98.3 4.6E-07 1.6E-11 71.7 5.0 50 254-304 11-63 (69)
116 4ic3_A E3 ubiquitin-protein li 98.3 9.8E-08 3.3E-12 77.0 0.8 45 255-304 22-67 (74)
117 2y1n_A E3 ubiquitin-protein li 98.3 1.9E-07 6.3E-12 98.2 2.9 50 257-306 332-381 (389)
118 1x4j_A Ring finger protein 38; 98.3 2.8E-07 9.6E-12 74.3 2.6 49 255-304 21-72 (75)
119 1ibr_B P95, importin beta-1 su 98.3 8.1E-06 2.8E-10 87.9 14.5 232 352-588 172-438 (462)
120 1u6g_C TIP120 protein, CAND1; 98.2 2.5E-06 8.4E-11 104.4 9.9 272 352-630 6-285 (1230)
121 2qk2_A LP04448P; mini spindles 98.2 1.3E-05 4.5E-10 79.3 13.2 182 439-629 19-205 (242)
122 2qk2_A LP04448P; mini spindles 98.2 8.9E-06 3E-10 80.6 11.9 181 356-547 19-206 (242)
123 4ap4_A E3 ubiquitin ligase RNF 98.1 5E-07 1.7E-11 81.0 1.7 57 254-311 69-132 (133)
124 2ecg_A Baculoviral IAP repeat- 98.1 7.9E-07 2.7E-11 71.8 1.7 45 255-304 23-68 (75)
125 1wim_A KIAA0161 protein; ring 98.1 8E-07 2.7E-11 75.1 1.8 67 255-322 3-83 (94)
126 2vgl_A Adaptor protein complex 98.1 0.00049 1.7E-08 78.0 25.0 253 353-628 147-432 (621)
127 3b2a_A TON_1937, putative unch 98.0 0.00011 3.6E-09 71.3 15.6 220 395-627 34-259 (265)
128 1u6g_C TIP120 protein, CAND1; 97.9 3.8E-05 1.3E-09 93.8 13.6 229 352-590 48-287 (1230)
129 2vje_A E3 ubiquitin-protein li 97.9 3.5E-06 1.2E-10 65.7 2.5 48 255-303 6-56 (64)
130 2ecl_A Ring-box protein 2; RNF 97.9 5.4E-06 1.8E-10 67.9 3.4 48 256-304 14-76 (81)
131 2vgl_A Adaptor protein complex 97.9 0.0014 4.7E-08 74.2 24.3 253 353-629 112-398 (621)
132 2vje_B MDM4 protein; proto-onc 97.9 4.2E-06 1.4E-10 65.0 2.5 47 257-304 7-56 (63)
133 1te4_A Conserved protein MTH18 97.9 2.6E-06 8.8E-11 76.2 1.1 120 393-543 11-130 (131)
134 2qk1_A Protein STU2; STU2P, XM 97.9 0.00021 7.2E-09 71.3 14.9 190 440-630 21-221 (249)
135 3t6p_A Baculoviral IAP repeat- 97.8 3.6E-06 1.2E-10 87.9 0.9 46 254-304 292-338 (345)
136 2yho_A E3 ubiquitin-protein li 97.8 3.3E-06 1.1E-10 68.8 0.4 45 255-304 16-61 (79)
137 1te4_A Conserved protein MTH18 97.8 4.1E-06 1.4E-10 74.9 0.6 119 353-503 13-131 (131)
138 3dad_A FH1/FH2 domain-containi 97.8 0.0016 5.5E-08 66.8 19.6 178 441-618 124-325 (339)
139 1ho8_A Vacuolar ATP synthase s 97.8 0.0012 4E-08 71.0 19.4 230 398-628 171-475 (480)
140 2qk1_A Protein STU2; STU2P, XM 97.7 0.00011 3.6E-09 73.5 9.9 188 357-546 21-220 (249)
141 3dpl_R Ring-box protein 1; ubi 97.7 2.7E-05 9.2E-10 67.1 4.0 47 256-303 36-100 (106)
142 3dad_A FH1/FH2 domain-containi 97.6 0.001 3.5E-08 68.2 15.6 148 480-627 122-284 (339)
143 2ea5_A Cell growth regulator w 97.5 6.2E-05 2.1E-09 59.3 4.2 45 255-304 13-58 (68)
144 2iw3_A Elongation factor 3A; a 97.5 0.0089 3.1E-07 70.3 24.0 262 351-630 53-325 (986)
145 1ho8_A Vacuolar ATP synthase s 97.4 0.0085 2.9E-07 64.4 19.9 229 357-587 172-476 (480)
146 2db0_A 253AA long hypothetical 97.4 0.085 2.9E-06 49.3 23.6 211 394-627 32-244 (253)
147 2d8s_A Cellular modulator of i 97.4 0.00011 3.9E-09 59.7 4.0 51 254-304 12-70 (80)
148 4ady_A RPN2, 26S proteasome re 97.3 0.019 6.6E-07 66.9 22.4 234 353-628 430-675 (963)
149 3tjz_B Coatomer subunit gamma; 97.1 0.0039 1.3E-07 65.2 13.6 217 352-594 104-323 (355)
150 4a0k_B E3 ubiquitin-protein li 97.1 6.8E-05 2.3E-09 65.6 0.0 45 258-303 49-111 (117)
151 2iw3_A Elongation factor 3A; a 97.0 0.0073 2.5E-07 71.0 16.0 261 353-631 15-282 (986)
152 2db0_A 253AA long hypothetical 97.0 0.21 7.2E-06 46.6 23.9 213 350-586 30-245 (253)
153 3tjz_B Coatomer subunit gamma; 96.9 0.024 8.4E-07 59.1 17.0 243 354-628 70-315 (355)
154 4ffb_C Protein STU2; tubulin f 96.4 0.096 3.3E-06 52.4 16.8 185 357-547 14-213 (278)
155 4ady_A RPN2, 26S proteasome re 96.3 0.33 1.1E-05 56.7 22.5 237 351-627 471-717 (963)
156 2fv2_A RCD1 required for cell 96.2 0.39 1.3E-05 47.1 19.1 227 353-585 4-266 (268)
157 4ffb_C Protein STU2; tubulin f 96.1 0.089 3E-06 52.7 15.0 188 437-631 12-214 (278)
158 1upk_A MO25 protein; transfera 95.9 0.33 1.1E-05 49.7 17.4 197 353-549 79-286 (341)
159 3oc3_A Helicase MOT1, MOT1; re 95.3 0.033 1.1E-06 60.5 8.1 243 353-625 175-432 (800)
160 3ebb_A Phospholipase A2-activa 95.3 0.51 1.8E-05 48.0 16.6 186 396-582 105-301 (304)
161 2ct0_A Non-SMC element 1 homol 95.1 0.018 6.1E-07 45.8 3.9 47 258-304 16-64 (74)
162 1vyx_A ORF K3, K3RING; zinc-bi 95.0 0.014 4.8E-07 44.4 3.0 47 257-303 6-58 (60)
163 2of3_A ZYG-9; multifunctional 94.9 0.49 1.7E-05 47.1 15.0 178 357-546 51-236 (266)
164 3vk6_A E3 ubiquitin-protein li 94.8 0.012 4.2E-07 48.9 2.3 51 259-309 3-54 (101)
165 1wa5_C Importin alpha RE-expor 94.3 0.96 3.3E-05 53.5 18.1 251 367-627 376-668 (960)
166 3ebb_A Phospholipase A2-activa 93.8 1.1 3.6E-05 45.6 14.9 137 488-626 160-303 (304)
167 2of3_A ZYG-9; multifunctional 93.4 1.4 4.7E-05 43.9 14.4 184 399-596 51-245 (266)
168 2fv2_A RCD1 required for cell 93.3 0.74 2.5E-05 45.2 11.9 145 370-515 74-234 (268)
169 3k1l_B Fancl; UBC, ring, RWD, 93.1 0.015 5.2E-07 59.4 -0.4 48 257-304 308-373 (381)
170 1lrv_A LRV, leucine-rich repea 92.7 0.082 2.8E-06 52.2 4.3 67 522-624 175-241 (244)
171 3oc3_A Helicase MOT1, MOT1; re 92.0 0.41 1.4E-05 52.1 8.9 212 395-627 175-402 (800)
172 1wa5_C Importin alpha RE-expor 91.9 9.7 0.00033 44.8 21.8 218 363-585 416-668 (960)
173 3i2d_A E3 SUMO-protein ligase 91.1 0.14 4.9E-06 53.0 4.0 64 256-319 248-315 (371)
174 2jun_A Midline-1; B-BOX, TRIM, 91.0 0.1 3.5E-06 43.8 2.4 34 256-289 2-38 (101)
175 2x1g_F Cadmus; transport prote 90.9 8.9 0.00031 45.0 20.0 132 447-588 476-616 (971)
176 2f31_A Diaphanous protein homo 89.8 9.1 0.00031 37.0 15.7 175 357-533 5-215 (233)
177 2x1g_F Cadmus; transport prote 89.5 16 0.00054 42.8 20.6 211 406-629 476-722 (971)
178 3eg5_B Protein diaphanous homo 88.7 19 0.00063 37.6 18.2 177 355-533 69-281 (383)
179 4fo9_A E3 SUMO-protein ligase 88.0 0.41 1.4E-05 49.4 4.7 64 255-318 213-280 (360)
180 2f31_A Diaphanous protein homo 87.8 5.1 0.00017 38.8 12.3 129 491-619 69-218 (233)
181 3u0r_A Apoptosis inhibitor 5; 87.3 6 0.0002 42.4 13.1 128 479-625 32-159 (507)
182 3eg5_B Protein diaphanous homo 86.7 9.4 0.00032 39.9 14.4 142 475-616 108-281 (383)
183 3u0r_A Apoptosis inhibitor 5; 86.3 17 0.00059 38.9 15.9 171 353-542 30-202 (507)
184 1lrv_A LRV, leucine-rich repea 85.1 0.64 2.2E-05 45.7 4.2 44 479-540 197-240 (244)
185 2x19_B Importin-13; nuclear tr 84.8 15 0.00051 42.9 16.6 153 362-526 459-621 (963)
186 2bnx_A Diaphanous protein homo 84.7 29 0.00098 36.2 17.0 175 357-533 9-219 (386)
187 2x19_B Importin-13; nuclear tr 84.6 12 0.00042 43.6 15.7 173 445-627 459-644 (963)
188 2bnx_A Diaphanous protein homo 84.4 11 0.00037 39.5 13.6 129 490-618 72-221 (386)
189 3c2g_A SYS-1 protein; beta-cat 83.4 12 0.0004 38.4 12.3 109 418-527 266-377 (619)
190 4hat_C Exportin-1; heat repeat 83.1 6.9 0.00024 46.5 12.6 141 447-590 465-621 (1023)
191 3m1i_C Exportin-1; heat repeat 81.3 28 0.00095 41.3 17.2 222 350-588 14-264 (1049)
192 4hat_C Exportin-1; heat repeat 78.9 12 0.00042 44.3 12.8 141 364-508 465-621 (1023)
193 2kre_A Ubiquitin conjugation f 77.0 1.1 3.7E-05 37.5 2.1 33 257-291 63-95 (100)
194 3nw0_A Non-structural maintena 76.5 1.8 6E-05 42.4 3.8 47 258-304 181-229 (238)
195 3l9t_A Putative uncharacterize 75.7 30 0.001 33.4 12.2 142 439-599 75-219 (240)
196 3gjx_A Exportin-1; transport, 75.1 1E+02 0.0035 36.6 19.2 222 350-588 26-276 (1073)
197 3m1i_C Exportin-1; heat repeat 75.0 97 0.0033 36.5 19.3 138 447-587 465-618 (1049)
198 1upk_A MO25 protein; transfera 73.7 82 0.0028 32.0 22.6 237 390-629 74-332 (341)
199 3ibv_A Exportin-T; karyopherin 70.5 1.7E+02 0.0058 34.3 19.8 193 354-555 42-272 (980)
200 1lsh_A Lipovitellin (LV-1N, LV 69.9 1.3E+02 0.0046 35.6 18.7 241 354-627 313-596 (1056)
201 3qml_C Protein SLS1, nucleotid 69.8 51 0.0017 33.1 12.5 145 437-586 24-188 (315)
202 3ibv_A Exportin-T; karyopherin 69.4 1.8E+02 0.0061 34.1 21.4 208 365-589 21-262 (980)
203 3mjh_B Early endosome antigen 67.9 0.46 1.6E-05 31.4 -1.8 19 256-274 4-22 (34)
204 1x5b_A Signal transducing adap 67.5 14 0.00049 33.5 7.6 73 351-423 51-125 (163)
205 1wgm_A Ubiquitin conjugation f 67.0 2.4 8.3E-05 35.2 2.0 33 257-291 57-89 (98)
206 2kkx_A Uncharacterized protein 66.2 2.9 9.8E-05 34.5 2.2 49 255-304 25-79 (102)
207 1mhq_A ADP-ribosylation factor 65.5 18 0.00061 32.4 7.6 73 351-423 37-116 (148)
208 1juq_A ADP-ribosylation factor 62.2 17 0.00058 33.4 7.0 73 351-423 49-128 (171)
209 3ldz_A STAM-1, signal transduc 61.6 17 0.00058 32.1 6.7 73 351-423 41-114 (140)
210 3qml_C Protein SLS1, nucleotid 61.0 1.4E+02 0.0048 29.9 14.9 145 478-628 24-188 (315)
211 3c2g_A SYS-1 protein; beta-cat 59.3 58 0.002 33.4 10.6 127 499-626 265-400 (619)
212 3ldz_A STAM-1, signal transduc 58.4 13 0.00046 32.8 5.4 70 559-628 43-113 (140)
213 3a6p_A Exportin-5; exportin-5, 58.3 1.3E+02 0.0045 36.1 15.9 218 354-589 13-278 (1204)
214 2kr4_A Ubiquitin conjugation f 57.6 3.4 0.00012 33.2 1.2 32 257-290 48-79 (85)
215 1x5b_A Signal transducing adap 57.3 17 0.00059 33.0 6.1 70 559-628 53-124 (163)
216 3l9t_A Putative uncharacterize 56.5 64 0.0022 31.1 10.1 138 401-556 78-218 (240)
217 1lsh_A Lipovitellin (LV-1N, LV 56.4 1.9E+02 0.0065 34.2 16.6 164 396-589 393-578 (1056)
218 3g2s_A C-terminal fragment of 54.9 33 0.0011 30.6 7.4 73 351-423 47-126 (149)
219 1mhq_A ADP-ribosylation factor 54.4 20 0.00069 32.0 5.9 70 559-628 39-115 (148)
220 2jvx_A NF-kappa-B essential mo 53.2 3.1 0.00011 26.1 0.2 17 255-271 1-17 (28)
221 1vdy_A Hypothetical protein (R 50.9 41 0.0014 29.7 7.2 74 559-632 50-133 (140)
222 1t1h_A Gspef-atpub14, armadill 50.4 6.8 0.00023 30.4 1.9 33 257-291 43-75 (78)
223 1juq_A ADP-ribosylation factor 50.3 19 0.00065 33.0 5.2 70 559-628 51-127 (171)
224 3g2s_A C-terminal fragment of 45.8 31 0.0011 30.8 5.7 70 559-628 49-125 (149)
225 2bay_A PRE-mRNA splicing facto 44.4 10 0.00036 28.3 2.0 39 292-331 3-44 (61)
226 3gae_A Protein DOA1; UFD3, CDC 44.4 29 0.001 33.9 5.8 127 411-546 71-217 (253)
227 2f42_A STIP1 homology and U-bo 44.3 6.6 0.00023 36.4 1.0 31 259-291 143-173 (179)
228 3zyq_A Hepatocyte growth facto 43.4 44 0.0015 32.0 6.8 73 351-423 44-118 (226)
229 2yu4_A E3 SUMO-protein ligase 41.5 14 0.00048 30.0 2.5 34 256-291 47-83 (94)
230 1dvp_A HRS, hepatocyte growth 40.0 51 0.0018 31.2 6.7 73 351-423 41-115 (220)
231 1elk_A Target of MYB1; superhe 39.9 72 0.0025 28.5 7.3 73 351-423 52-130 (157)
232 6rxn_A Rubredoxin; electron tr 38.6 8.9 0.0003 27.1 0.7 13 253-265 26-38 (46)
233 2c2l_A CHIP, carboxy terminus 38.3 11 0.00039 36.8 1.8 31 259-291 245-275 (281)
234 4rxn_A Rubredoxin; electron tr 34.2 11 0.00039 27.5 0.7 14 253-266 32-45 (54)
235 1e8j_A Rubredoxin; iron-sulfur 33.6 13 0.00045 26.9 1.0 14 253-266 32-45 (52)
236 1dvp_A HRS, hepatocyte growth 31.7 60 0.0021 30.7 5.7 70 559-628 43-114 (220)
237 3o2t_A Symplekin; heat repeat, 31.2 3.1E+02 0.011 28.4 11.3 106 476-585 63-181 (386)
238 3pst_A Protein DOA1; protein d 30.7 2.9E+02 0.0099 29.0 11.0 128 411-547 243-390 (425)
239 2kn9_A Rubredoxin; metalloprot 29.7 16 0.00056 29.0 1.0 14 253-266 56-69 (81)
240 3zyq_A Hepatocyte growth facto 29.3 62 0.0021 30.9 5.3 69 395-463 46-117 (226)
241 1yk4_A Rubredoxin, RD; electro 29.3 15 0.00053 26.6 0.7 14 253-266 31-44 (52)
242 2v3b_B Rubredoxin 2, rubredoxi 28.8 16 0.00054 26.9 0.7 14 253-266 32-45 (55)
243 3gjx_A Exportin-1; transport, 26.8 8.4E+02 0.029 28.7 17.4 180 437-632 30-239 (1073)
244 3gae_A Protein DOA1; UFD3, CDC 26.4 66 0.0023 31.3 5.0 101 487-590 101-220 (253)
245 1dx8_A Rubredoxin; electron tr 26.3 18 0.00063 27.9 0.7 14 253-266 36-49 (70)
246 1elk_A Target of MYB1; superhe 23.9 1.1E+02 0.0038 27.2 5.6 70 559-628 54-129 (157)
247 1s24_A Rubredoxin 2; electron 23.6 22 0.00077 28.7 0.7 14 253-266 64-77 (87)
248 2xqn_T Testin, TESS; metal-bin 22.8 39 0.0013 28.7 2.3 47 255-304 28-75 (126)
249 1weo_A Cellulose synthase, cat 22.5 75 0.0026 25.6 3.5 46 258-303 17-69 (93)
250 2xpp_A IWS1, ECU08_0440; trans 22.4 4E+02 0.014 23.4 8.7 80 546-629 49-136 (145)
251 3l3f_X Protein DOA1, DOA1/UFD3 21.2 1.1E+02 0.0038 31.5 5.5 127 411-546 180-326 (362)
252 2cs3_A Protein C14ORF4, MY039 21.0 89 0.0031 24.6 3.6 42 256-297 14-63 (93)
253 2kw6_A Cyclin-dependent kinase 20.8 69 0.0023 24.1 2.8 41 50-101 15-56 (65)
254 1m3v_A FLIN4, fusion of the LI 20.6 47 0.0016 28.1 2.3 51 255-306 30-83 (122)
255 2nz7_A NOD1, caspase recruitme 20.4 1.3E+02 0.0045 24.6 4.9 79 34-131 12-91 (98)
256 2jne_A Hypothetical protein YF 20.4 30 0.001 28.4 0.8 41 258-304 33-73 (101)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.2e-30 Score=276.84 Aligned_cols=264 Identities=21% Similarity=0.262 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----------CChHHHHHHHHHHHHhhhCc-chHHHHHH-
Q 006669 367 EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----------DDVMTQEHAVTAILNLSIYE-NNKGLIML- 433 (636)
Q Consensus 367 ~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----------~d~~~~e~Av~aL~nLs~~~-~~k~~I~~- 433 (636)
..+..|++.|.+++.+ +++|..+.+.|+++.|+.+|.+ .++.++++|+++|.||+..+ .++..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455799999999974 8999999999999999999953 23678999999999999854 47877765
Q ss_pred hCChHHHHHHHhcCcHHHHHHHHHHHHHccCC--CchhHHHHhcCchHHHHhhh-ccCCHHHHHHHHHHHHhhhh-ccch
Q 006669 434 AGAIPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLL-QNGSTRGRKDAATALFNLCI-YMGN 509 (636)
Q Consensus 434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL~~-~~~n 509 (636)
.|+|+.|+.+|++++++++++|+++|.||+.. +++|..|.+.|++++|+++| +++++..++.|+.+|+||+. ++++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 56799999999999999999999999999985 46899999999999999975 56789999999999999998 6688
Q ss_pred HHHHH-HhchHHHHHHHhcCCCH----HHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 006669 510 KGRAV-RAGIISALLKMLTDSRN----CMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA 580 (636)
Q Consensus 510 ~~~lv-~~g~v~~Lv~lL~~~~~----~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~ 580 (636)
+..++ ..|+++.|+++|.+.++ .+++.|+++|.||+. +++++..+.+.|+++.|+++|++++..++++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 88888 69999999999987544 589999999999995 8899999999999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 581 ILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 581 ~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
+|.+|+..+++.+..+.+.|+++.|+.++.++++++++.|.++|++|....
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999888999999999999999999999999999999999999998754
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.5e-30 Score=284.70 Aligned_cols=281 Identities=22% Similarity=0.243 Sum_probs=245.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~~I 431 (636)
.++.|++.|++++++.|..|+..|++++.+++.++..+.+.|+||.|+.+|+++++.+++.|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 489999999999999999999999999988888898999999999999999999999999999999999985 8999999
Q ss_pred HHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc--------cC--------CHHHHH
Q 006669 432 MLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ--------NG--------STRGRK 494 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~--------~~--------~~~~k~ 494 (636)
++.|+|++|+++|+ +++++++++|+++|+||+..++++..+++ |++++|+.+|. ++ +....+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999999999999 99999999993 22 345566
Q ss_pred HHHHHHHhhhhccchHHHHHHh-chHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC--------------------
Q 006669 495 DAATALFNLCIYMGNKGRAVRA-GIISALLKMLTD------SRNCMVDEALTILSVLASN-------------------- 547 (636)
Q Consensus 495 ~A~~aL~nL~~~~~n~~~lv~~-g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~-------------------- 547 (636)
+|+++|+||+.+++++..+++. |+++.|+.+|.+ .+..+++.|+.+|.+|+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999988889999997 999999999974 4567889999999999732
Q ss_pred -------------------------------hhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccChHH---
Q 006669 548 -------------------------------PEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDTEN--- 592 (636)
Q Consensus 548 -------------------------------~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~~~--- 592 (636)
+++.+.+++.|+++.|+.+|.++ ++..++.|+++|.++|.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 12333455667899999999754 6999999999999999865432
Q ss_pred H-H-HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcccccc
Q 006669 593 L-A-CISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQ 634 (636)
Q Consensus 593 ~-~-~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~~ 634 (636)
. . .+.+.|+++.|+.++.++++++++.|.++|+++.+..+.+
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~ 365 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH
Confidence 1 2 3346899999999999999999999999999998866543
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.2e-29 Score=283.40 Aligned_cols=282 Identities=22% Similarity=0.261 Sum_probs=244.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC--cchHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY--ENNKG 429 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~--~~~k~ 429 (636)
..++.||++|.+++.+.|..|+..|++++..++++|..|++.|+||.||.+|++++..++++|+++|.||+.+ +++|.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 4699999999999999999999999999998999999999999999999999999999999999999999984 89999
Q ss_pred HHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc------------------cCCH
Q 006669 430 LIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ------------------NGST 490 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~------------------~~~~ 490 (636)
.|++.|+|++|+.+|++ ++.+++++|+++|++||..+++|..|++ +++++|++++. ..+.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999998 5789999999999999999999999995 57999999872 1146
Q ss_pred HHHHHHHHHHHhhhhccch-HHHHHH-hchHHHHHHHhcC------CCHHHHHHHHHHHHHHhcChh-------------
Q 006669 491 RGRKDAATALFNLCIYMGN-KGRAVR-AGIISALLKMLTD------SRNCMVDEALTILSVLASNPE------------- 549 (636)
Q Consensus 491 ~~k~~A~~aL~nL~~~~~n-~~~lv~-~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~~~------------- 549 (636)
.++++|+++|+||+.++++ |..+++ .|+++.|+.++.+ .+...++.|+++|+||+...+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999999998754 888888 5778899999863 467899999999999997521
Q ss_pred -------------hHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhccCh----HHHHHHHHcCChHHHHHhhhc
Q 006669 550 -------------AKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDT----ENLACISRLGAVIPLTELTKS 611 (636)
Q Consensus 550 -------------~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~----~~~~~i~~~G~i~~L~~Ll~~ 611 (636)
+.+.+++.++|+.|+.+|+ +.++.++++|+++|.+||.++. ..+..+.+.|+++.|+.|+.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 2223344466788999996 4579999999999999998652 223344567899999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccccc
Q 006669 612 GTERAKRKATSLLEHLRKLPQLQ 634 (636)
Q Consensus 612 g~~~~k~kA~~lL~~l~~~~~~~ 634 (636)
+++.+++.|.++|++|......+
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~ 389 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNK 389 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCH
T ss_pred CCHHHHHHHHHHHHHHhCChhHH
Confidence 99999999999999998866543
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=275.27 Aligned_cols=261 Identities=21% Similarity=0.264 Sum_probs=235.4
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----------CChHHHHHHHHHHHHhhhCcc-hHHHHHH-hCC
Q 006669 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----------DDVMTQEHAVTAILNLSIYEN-NKGLIML-AGA 436 (636)
Q Consensus 370 ~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----------~d~~~~e~Av~aL~nLs~~~~-~k~~I~~-~G~ 436 (636)
..|++.|.+++. ++++|..+.+.|++++|+.+|.. .++.++++|+++|.||+.+++ ++..+.. .|+
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 389999999986 58999999999999999999952 236789999999999998554 6777765 667
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCC--CchhHHHHhcCchHHHHhhh-ccCCHHHHHHHHHHHHhhhh-ccchHHH
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLL-QNGSTRGRKDAATALFNLCI-YMGNKGR 512 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL~~-~~~n~~~ 512 (636)
|+.|+.+|++++++++++|+++|.||+.. +++|..|.+.|++++|+++| .++++.+++.|+.+|+||+. +++++..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999985 46889999999999999975 56788999999999999998 6688998
Q ss_pred HH-HhchHHHHHHHhcCCCH----HHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669 513 AV-RAGIISALLKMLTDSRN----CMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583 (636)
Q Consensus 513 lv-~~g~v~~Lv~lL~~~~~----~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 583 (636)
++ ..|+++.|+++|.+.+. .+++.|+++|.||+. +++++..+.+.|+++.|+.+|++++..++++|+++|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 88 69999999999987544 489999999999995 8889999999999999999999999999999999999
Q ss_pred HhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 584 SLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 584 ~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
+++..+++.+..+++.|+++.|+.++.++++.+++.|.++|++|....
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999888999999999999999999999999999999999999998654
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=5e-29 Score=274.35 Aligned_cols=285 Identities=22% Similarity=0.212 Sum_probs=250.6
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhhCcchH
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSIYENNK 428 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~~~~k 428 (636)
+.++++.|++.|++++++.|..|+..|++|+.+++++|..|++.|+||.|+.+|+ +++++++++|+++|.||+.+++++
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 4568999999999999999999999999999988999999999999999999999 889999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHh--------cC--------cHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhccC---
Q 006669 429 GLIMLAGAIPSIVQILR--------AG--------SMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQNG--- 488 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~--------~~--------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~~--- 488 (636)
..+++ |+++.|+.+|. ++ ++++..+|+++|+||+..++++..+.+. |++++|+.+|+++
T Consensus 122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence 99999 99999999993 33 3455669999999999988889999998 9999999888631
Q ss_pred --------------------------------------------------------------------------------
Q 006669 489 -------------------------------------------------------------------------------- 488 (636)
Q Consensus 489 -------------------------------------------------------------------------------- 488 (636)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred ----------------CHHHHHHHHHHHHhhhhccchH-----HHHH-HhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 489 ----------------STRGRKDAATALFNLCIYMGNK-----GRAV-RAGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 489 ----------------~~~~k~~A~~aL~nL~~~~~n~-----~~lv-~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
++..++.|+++|.||+..+... ..++ ++|++|.|+++|.+++.+++..|+++|.||+.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 2455667889999998765331 2234 58999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCC------HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC-CHHHHHH
Q 006669 547 NPEAKIAIVKASTIPVLIVLLRTGL------PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG-TERAKRK 619 (636)
Q Consensus 547 ~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g-~~~~k~k 619 (636)
+++.+..|.. |+++.|+++|..++ +.+...++.+|.+++..+++....+.+.|++++|+.++.++ +++++++
T Consensus 361 ~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~ 439 (457)
T 1xm9_A 361 HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439 (457)
T ss_dssp SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHH
Confidence 9888877754 79999999998763 35777899999999998999999999999999999999999 9999999
Q ss_pred HHHHHHHhhcccccccC
Q 006669 620 ATSLLEHLRKLPQLQQV 636 (636)
Q Consensus 620 A~~lL~~l~~~~~~~~~ 636 (636)
|.++|.++..+.+++.+
T Consensus 440 A~~~L~~~~~~~~l~~~ 456 (457)
T 1xm9_A 440 ARLLLSDMWSSKELQGV 456 (457)
T ss_dssp HHHHHHTTSSSTTCSSC
T ss_pred HHHHHHHHHcchhhhcc
Confidence 99999999998888753
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=6.1e-28 Score=269.67 Aligned_cols=283 Identities=22% Similarity=0.233 Sum_probs=241.3
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcch
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENN 427 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~ 427 (636)
+.++|+.||++|++++.++|..|+.+|++|+.+ +++||..|++.|+||.|+.+|++ .+..++++|+.+|+|||.++++
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 446899999999999999999999999999985 69999999999999999999997 5788999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHh------------------cCcHHHHHHHHHHHHHccCCCc-hhHHHHhc-CchHHHHhhhcc
Q 006669 428 KGLIMLAGAIPSIVQILR------------------AGSMEARENAAATLFSLSLLDE-NKIIIGAS-GAIPALVDLLQN 487 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~------------------~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~-g~i~~Lv~LL~~ 487 (636)
|..|++ |+|++|+++|. ..+.+++++|+++|+||+..++ ++..|.+. |+++.||.++++
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999996 57999999862 1247899999999999998875 47777776 666677776642
Q ss_pred --------------------------------------------------------------------------CCHHHH
Q 006669 488 --------------------------------------------------------------------------GSTRGR 493 (636)
Q Consensus 488 --------------------------------------------------------------------------~~~~~k 493 (636)
.++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 134455
Q ss_pred HHHHHHHHhhhhccc-----hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc
Q 006669 494 KDAATALFNLCIYMG-----NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR 568 (636)
Q Consensus 494 ~~A~~aL~nL~~~~~-----n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~ 568 (636)
++|++||.|||.... ++..+.+.|+++.|++||.+.+..+++.|+++|.||+.++.++..| ..|++|.||.+|.
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence 566666666665431 2333345789999999999999999999999999999999988877 6799999999998
Q ss_pred CC--------CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcccccc
Q 006669 569 TG--------LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG--TERAKRKATSLLEHLRKLPQLQ 634 (636)
Q Consensus 569 ~~--------s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g--~~~~k~kA~~lL~~l~~~~~~~ 634 (636)
++ +..+...|+++|.||+..++++...+.+.|+++.|+.++.++ .+.+++.|.++|.+|..+.+++
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr 481 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR 481 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHH
Confidence 76 467888999999999999999999999999999999999987 8999999999999999877664
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=2e-27 Score=273.82 Aligned_cols=284 Identities=14% Similarity=0.154 Sum_probs=254.3
Q ss_pred cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-----------------------------hhH---HHHHhcC
Q 006669 347 VSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRST-----------------------------DNR---IIIADAG 394 (636)
Q Consensus 347 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-----------------------------~~r---~~i~e~g 394 (636)
+..+.+.++.|+++|++++...+..|+..|.+++...+ .++ ..++++|
T Consensus 416 lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 416 LIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 34467899999999999999999999999999997542 223 6788999
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH-
Q 006669 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG- 473 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~- 473 (636)
++|.|+.+|+++++.++++|+++|.||+.+++++..+++.|++++|+.+|+++++..+++|+++|.+|+...+....+.
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 9999999999999999999999999999988899999999999999999999999999999999999987654433221
Q ss_pred --hcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669 474 --ASGAIPALVDLLQNG-STRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE 549 (636)
Q Consensus 474 --~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~ 549 (636)
..|++++|+.+|..+ +...+..|+++|.||+..+ +++..++++|+++.|+++|.+.+..++..|+.+|.||+.+++
T Consensus 576 ~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence 137999999999865 4556779999999999875 678999999999999999999999999999999999999999
Q ss_pred hHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 550 AKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR-LGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 550 ~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~-~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
.+..+.+ .|+++.|+.++.+.+..+++.|+++|.+++.+++..+..+++ .|+++.|+.++.+++..+++.|.++|.++
T Consensus 656 ~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 656 VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 9888886 689999999999999999999999999999988888888888 89999999999999999999999999998
Q ss_pred hcc
Q 006669 628 RKL 630 (636)
Q Consensus 628 ~~~ 630 (636)
...
T Consensus 736 ~~~ 738 (810)
T 3now_A 736 INA 738 (810)
T ss_dssp HTT
T ss_pred HhC
Confidence 653
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=1.2e-27 Score=253.90 Aligned_cols=245 Identities=20% Similarity=0.221 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCChHHHHHHHH
Q 006669 349 GDVVAIEALVRKLSS-----------RSVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLLTTDDVMTQEHAVT 416 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s-----------~~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL~s~d~~~~e~Av~ 416 (636)
.+.++++.|+..|.+ .+++.|..|+..|.+|+..++.+|..+.. .|+||.|+.+|++++.++++.|++
T Consensus 70 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 149 (354)
T 3nmw_A 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 149 (354)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHH
Confidence 345689999999952 24678999999999999988889988865 466999999999999999999999
Q ss_pred HHHHhhhC--cchHHHHHHhCChHHHHHHH-hcCcHHHHHHHHHHHHHccC-CCchhHHHH-hcCchHHHHhhhccCCH-
Q 006669 417 AILNLSIY--ENNKGLIMLAGAIPSIVQIL-RAGSMEARENAAATLFSLSL-LDENKIIIG-ASGAIPALVDLLQNGST- 490 (636)
Q Consensus 417 aL~nLs~~--~~~k~~I~~~G~I~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~LL~~~~~- 490 (636)
+|.||+.. +++|..|.+.|+|++|+++| ++++.+++++|+.+|+||+. .++++..|+ ..|+++.|+.+|..+++
T Consensus 150 aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~ 229 (354)
T 3nmw_A 150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229 (354)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence 99999984 57899999999999999975 56789999999999999998 668899998 56999999999987754
Q ss_pred ---HHHHHHHHHHHhhhh----ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHH
Q 006669 491 ---RGRKDAATALFNLCI----YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPV 562 (636)
Q Consensus 491 ---~~k~~A~~aL~nL~~----~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~ 562 (636)
.+++.|+++|.||+. +++++..++++|+++.|+++|.+++..+++.|+++|+||+. +++++..+.+.|+|+.
T Consensus 230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~ 309 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM 309 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence 589999999999996 67889999999999999999999999999999999999994 7889999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhccChHHH
Q 006669 563 LIVLLRTGLPRNKENAAAILLSLCKRDTENL 593 (636)
Q Consensus 563 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~ 593 (636)
|+++|+++++++++.|+++|.+|+.+++...
T Consensus 310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 310 LKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999877543
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=258.35 Aligned_cols=281 Identities=20% Similarity=0.210 Sum_probs=245.2
Q ss_pred CCHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCH----------HHHHHhhcCC
Q 006669 349 GDVVAIEALVRKLSS------------RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAI----------PVLVNLLTTD 406 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s------------~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i----------~~Lv~lL~s~ 406 (636)
...+.+|.||+.|+. ++++.+.+|+++|.+++..+++......+.|++ +.+++++.+.
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 456789999999986 337999999999999999998888888888887 6677777654
Q ss_pred C--hH-----HHH-------HHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhc-----------CcHHHHHHHHHHHHH
Q 006669 407 D--VM-----TQE-------HAVTAILNLSIYENNKGLIMLAGAIPSIVQILRA-----------GSMEARENAAATLFS 461 (636)
Q Consensus 407 d--~~-----~~e-------~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~-----------~~~e~~~~Aa~~L~~ 461 (636)
. .+ +.+ +|+++|.|++.++++|..|.+.|++++|+.+|.. .++.++.+|+++|.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 2 11 344 9999999999999999999999999999999952 247789999999999
Q ss_pred ccCCCc-hhHHHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhc--cchHHHHHHhchHHHHHHHh-cCCCHHHHHH
Q 006669 462 LSLLDE-NKIIIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIY--MGNKGRAVRAGIISALLKML-TDSRNCMVDE 536 (636)
Q Consensus 462 Ls~~~~-~~~~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~--~~n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~ 536 (636)
|+..++ ++..+... |+||+|+.+|++++++++..|+++|.||+.. +++|..+++.|+|+.|+++| .+.+..+++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 998876 66666554 7799999999999999999999999999985 46889999999999999985 5578899999
Q ss_pred HHHHHHHHhc-ChhhHHHHH-hcCcHHHHHHHHcCCCH----HHHHHHHHHHHHhhc---cChHHHHHHHHcCChHHHHH
Q 006669 537 ALTILSVLAS-NPEAKIAIV-KASTIPVLIVLLRTGLP----RNKENAAAILLSLCK---RDTENLACISRLGAVIPLTE 607 (636)
Q Consensus 537 Al~~L~~La~-~~~~~~~i~-~~g~i~~Lv~lL~~~s~----~~ke~A~~~L~~L~~---~~~~~~~~i~~~G~i~~L~~ 607 (636)
|+.+|+||+. +++++..|. ..|+++.|+.+|.++++ .++++|+++|.+|+. .+++++..+.+.|+++.|+.
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 9999999999 778898888 68999999999987654 489999999999997 68889999999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHhhc
Q 006669 608 LTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 608 Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
++.+++..+++.|.++|.+|..
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHcCCChHHHHHHHHHHHHHHc
Confidence 9999999999999999999984
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=1.6e-26 Score=257.83 Aligned_cols=280 Identities=18% Similarity=0.230 Sum_probs=251.8
Q ss_pred CHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cch
Q 006669 350 DVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENN 427 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~ 427 (636)
+.|.+|.||++|++ .+++.|..|+++|.+++.++++++..+++.|+||.|+.+|++++..+++.|+++|.||+.+ +..
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 45789999999975 5689999999999999999999999999999999999999999999999999999999984 677
Q ss_pred HHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHH
Q 006669 428 KGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALF 501 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~ 501 (636)
+..+.+.|++++|+.+|.+. ......+++++|.+++........+.. .++++.|+.++.+++++++..|+++|.
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88999999999999999764 346788999999999887655444433 489999999999999999999999999
Q ss_pred hhhhccchH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 006669 502 NLCIYMGNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAA 579 (636)
Q Consensus 502 nL~~~~~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~ 579 (636)
+|+....++ ..+++.|+++.|+++|.+.+..++..|+.+|.|++.. +..+..+.+.|+++.|+.+|.+.++.+++.|+
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 999877655 4556799999999999999999999999999999874 55677888999999999999999999999999
Q ss_pred HHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 580 AILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 580 ~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
++|.+++.++++....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999864
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=1.2e-26 Score=267.28 Aligned_cols=283 Identities=14% Similarity=0.126 Sum_probs=254.4
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG 429 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~ 429 (636)
+.++++.|+++|+++++.+|..|++.|.+++. ++++|..+++.|++|+|+.+|.+++...+++|+++|.||+.+.+...
T Consensus 493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 493 NEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 44689999999999999999999999999996 67899999999999999999999999999999999999998543332
Q ss_pred HH---HHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669 430 LI---MLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504 (636)
Q Consensus 430 ~I---~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~ 504 (636)
.+ ...|++++|+.+|.++ +...+..|+++|.||+..+ +++..|.+.|+++.|+.+|.++++.+++.|+++|.||+
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 22 1246999999999876 4566778999999999874 67889999999999999999999999999999999999
Q ss_pred hccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHH
Q 006669 505 IYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAI 581 (636)
Q Consensus 505 ~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~ 581 (636)
.+++.+..+++ .|+++.|+.++.+.+..++..|+++|++|+. +++....+++ .|+++.|+.+|.+++...++.|+++
T Consensus 652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 99888888886 7999999999999999999999999999999 7888888888 8999999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHcCChHHHHHhhhcC---CHHHHHHHHHHHHHhhccccc
Q 006669 582 LLSLCKRDTENLACISRLGAVIPLTELTKSG---TERAKRKATSLLEHLRKLPQL 633 (636)
Q Consensus 582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g---~~~~k~kA~~lL~~l~~~~~~ 633 (636)
|.|++.++++....+.+.|++++|..+++.. ++++.+.|..+|+.+-++-.+
T Consensus 732 L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 9999988888889999999999999998654 789999999999999766543
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=4.4e-26 Score=255.42 Aligned_cols=280 Identities=18% Similarity=0.226 Sum_probs=253.0
Q ss_pred CHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch
Q 006669 350 DVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN 427 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~ 427 (636)
+.+.++.||+.|+. .+++.|..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+++|.||+. ++.+
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 45689999999974 568999999999999999999999999999999999999999999999999999999998 5678
Q ss_pred HHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHH
Q 006669 428 KGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALF 501 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~ 501 (636)
+..+.+.|++++|+.+|..+ ......+++++|.+++........+.. .+++|.|+.++.+++++++.+|+++|.
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999764 346788999999999887655444433 489999999999999999999999999
Q ss_pred hhhhccchH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 006669 502 NLCIYMGNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAA 579 (636)
Q Consensus 502 nL~~~~~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~ 579 (636)
+|+...+++ ..+++.|+++.|+++|.+.+..++..|+.+|.|++.. +.....+.+.|+++.|+.+|.++++.++..|+
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~ 356 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 356 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence 999877654 4566799999999999999999999999999999874 55677888999999999999999999999999
Q ss_pred HHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 580 AILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 580 ~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
++|.+++.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999864
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=6.3e-26 Score=253.00 Aligned_cols=279 Identities=20% Similarity=0.228 Sum_probs=247.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH-hccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhh-CcchHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSL-SKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSI-YENNKG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L-a~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~-~~~~k~ 429 (636)
.++.+|+.+.|.+.+.|..|+..+|.+ +++.......+++.|+||.||.+|++ +++.+|.+|+++|.||+. +++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 589999999999999999999999975 55444456789999999999999975 558999999999999987 677888
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCC-----HHHHHHHHHHHHhh
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGS-----TRGRKDAATALFNL 503 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~-----~~~k~~A~~aL~nL 503 (636)
.+++.|+||.|+.+|++++.++++.|+++|+||+.+. +++..+.+.|++++|+.+|...+ ......++++|.|+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 56788888899999999998653 45788999999999
Q ss_pred hhccchHHHH-HHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh-HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHH
Q 006669 504 CIYMGNKGRA-VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA-KIAIVKASTIPVLIVLLRTGLPRNKENAAAI 581 (636)
Q Consensus 504 ~~~~~n~~~l-v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~-~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~ 581 (636)
+.+......+ ...|++|.|++++.+.+.+++..|+++|.+|+..+.. ...+.+.|+++.|+.+|.+.++.++..|+.+
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9877654444 3478999999999999999999999999999987654 5567789999999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 582 LLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
|.+++..+......+.+.|+++.|+.++.++++.+++.|.++|.+|....
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~ 347 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 99999999899999999999999999999999999999999999997643
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=6.8e-25 Score=245.08 Aligned_cols=280 Identities=19% Similarity=0.262 Sum_probs=256.2
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH
Q 006669 351 VVAIEALVRKLSSRS-VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK 428 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k 428 (636)
.+.++.|++.|++++ ++.+..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 357999999999887 99999999999999998899999999999999999999999999999999999999984 5678
Q ss_pred HHHHHhCChHHHHHHH-hcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 429 GLIMLAGAIPSIVQIL-RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
..+.+.|+++.|+.+| .+.++.++.+|+++|.+|+............|+++.|+.+|.++++.++..|+++|.+|+...
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999 566899999999999999987655555566799999999999999999999999999999877
Q ss_pred chH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 006669 508 GNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLS 584 (636)
Q Consensus 508 ~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~ 584 (636)
+++ ..+++.|+++.|+.+|.+.+..++..|+.+|.+|+. .+.....+.+.|+++.|+.+|.++ ++.++..|+++|.+
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 654 567789999999999999999999999999999998 456777888999999999999988 89999999999999
Q ss_pred hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
++..++.....+...|+++.|+.++.++++.+++.|.++|.++...
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9998888888999999999999999999999999999999998764
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=5.3e-25 Score=220.29 Aligned_cols=238 Identities=29% Similarity=0.329 Sum_probs=222.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~~I 431 (636)
.++.|++.|.+++++.+..|+..|.+++..+++++..+.+.|+++.|+.+|++++..++..|+.+|.||+.+ ++++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 589999999999999999999999999998888999999999999999999999999999999999999996 8889999
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHcc-CCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-h
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLS-LLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-N 509 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n 509 (636)
.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.++.++++.++..++++|.||+...+ +
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 556788888889999999999999999999999999999998654 4
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669 510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 588 (636)
+..+++.|+++.|++++.+.++.++..|+.+|.+|+. +++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 5788899999999999999999999999999999998 566788889999999999999999999999999999999976
Q ss_pred Ch
Q 006669 589 DT 590 (636)
Q Consensus 589 ~~ 590 (636)
.+
T Consensus 243 ~~ 244 (252)
T 4hxt_A 243 GW 244 (252)
T ss_dssp CB
T ss_pred CC
Confidence 53
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=1.3e-24 Score=243.48 Aligned_cols=282 Identities=19% Similarity=0.233 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC-----hHHHHHHHHHHHHhhh
Q 006669 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD-----VMTQEHAVTAILNLSI 423 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d-----~~~~e~Av~aL~nLs~ 423 (636)
.+.++++.|+.+|.+++.+++..|+++|.+++.+++++|..+.+.|+++.|+.+|...+ ...+.+++++|.|++.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 34568999999999999999999999999999999999999999999999999998654 3467899999999998
Q ss_pred CcchH-HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH-HHHhcCchHHHHhhhccCCHHHHHHHHHHHH
Q 006669 424 YENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAATALF 501 (636)
Q Consensus 424 ~~~~k-~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~ 501 (636)
+.... ......|+++.|+.+|.+++++++..|+++|.+++..+..+. .+...|+++.|+.+|.+++..++..++.+|.
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 65443 333447899999999999999999999999999998776554 4566799999999999999999999999999
Q ss_pred hhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 006669 502 NLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAA 579 (636)
Q Consensus 502 nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~ 579 (636)
|++... .++..+++.|+++.|+.+|.+++..++..|+++|.||+. +++.+..+.+.|++|.|+.++.+++..++..|+
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~ 398 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA 398 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence 998765 557788899999999999999999999999999999998 455677888999999999999999999999999
Q ss_pred HHHHHhhcc-ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 580 AILLSLCKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 580 ~~L~~L~~~-~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
++|.+++.+ +++.+..+++.|++++|+.++.+.++.+...+..+|.+|-+.
T Consensus 399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999875 567788899999999999999999999999999999988653
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1.1e-24 Score=217.94 Aligned_cols=238 Identities=28% Similarity=0.314 Sum_probs=222.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-chHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE-NNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKII 471 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~-~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~ 471 (636)
|+++.|+.+|.++++.++..|+.+|.+++... +++..+.+.|+++.|+.+|++++++++..|+++|.+++.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67899999999999999999999999999854 5889999999999999999999999999999999999988 678888
Q ss_pred HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh-hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hh
Q 006669 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLC-IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PE 549 (636)
Q Consensus 472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~-~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~ 549 (636)
+.+.|+++.|+.+|+++++.++..|+++|.||+ ..++++..+++.|+++.|++++.+.++.++..|+.+|.+|+.. ++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 4557888999999999999999999999999999999999984 55
Q ss_pred hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 550 AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 550 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
.+..+.+.|+++.|+.++.++++.++..|+++|.+++..++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 56788899999999999999999999999999999999888999999999999999999999999999999999999986
Q ss_pred cc
Q 006669 630 LP 631 (636)
Q Consensus 630 ~~ 631 (636)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=2.2e-24 Score=240.99 Aligned_cols=279 Identities=21% Similarity=0.233 Sum_probs=252.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCC-hHHHHHHHHHHHHhhhC-cchH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTTDD-VMTQEHAVTAILNLSIY-ENNK 428 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s~d-~~~~e~Av~aL~nLs~~-~~~k 428 (636)
..++.|++.|.+++++.+..|+..|+.+..... .++..+.+.|++|.|+.+|.+++ +.++..|+++|.+++.. ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 358999999999999999999999999865543 67888899999999999999876 99999999999999994 7888
Q ss_pred HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhh-ccCCHHHHHHHHHHHHhhhhc
Q 006669 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLL-QNGSTRGRKDAATALFNLCIY 506 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL~~~ 506 (636)
..+++.|+++.|+.+|.++++++++.|+++|.+|+... .++..+...|++++|+.+| .+.++.++..|+++|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999998764 4678888889999999999 566899999999999999988
Q ss_pred cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 507 ~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
.++.......|+++.|+++|.+.+..++..|+++|.+|+..++.+ ..+.+.|+++.|+.+|.+.++.++..|+++|.++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 666666667999999999999999999999999999999876654 5778899999999999999999999999999999
Q ss_pred hccChHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcc
Q 006669 586 CKRDTENLACISRLGAVIPLTELTKSG-TERAKRKATSLLEHLRKL 630 (636)
Q Consensus 586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~~ 630 (636)
+.+++.....+.+.|+++.|+.++.++ ++.+++.|.++|.+|...
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 998888888899999999999999999 999999999999999753
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=4.1e-25 Score=222.14 Aligned_cols=235 Identities=25% Similarity=0.313 Sum_probs=218.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I 431 (636)
..+.+++.|.+++++.+..|+..|+++...+.+++..+.+.|+++.|+.+|+++++.++..|+.+|.|++. +++++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 48899999999999999999999977655577889999999999999999999999999999999999998 68889999
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh-HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-ch
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK-IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GN 509 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n 509 (636)
.+.|+++.|+.+|++++++++..|+++|.+|+..++++ ..+.+.|+++.|+.+|.++++.++..|+++|.||+... ++
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999999988 78888899999999999999999999999999999865 56
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
+..+++.|+++.|++++.+++..++..|+.+|.+|+. +++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 7778889999999999999999999999999999995 66778888999999999999999999999999999999985
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.3e-24 Score=218.49 Aligned_cols=236 Identities=25% Similarity=0.331 Sum_probs=219.7
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccC-CCchhHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSL-LDENKII 471 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~ 471 (636)
...+.++..|++++++++..|+.+|.++.. +++++..+.+.|+++.|+.+|++++++++..|+++|.+++. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 468899999999999999999999977554 67778889999999999999999999999999999999997 5678888
Q ss_pred HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hh
Q 006669 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PE 549 (636)
Q Consensus 472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~ 549 (636)
+.+.|+++.|+.+|+++++.++..|+++|.||+...+++ ..+++.|+++.|+++|.+++..++..|+++|.+|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999888 8889999999999999999999999999999999984 56
Q ss_pred hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 550 AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 550 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
.+..+.+.|+++.|+.++.++++.+++.|+++|.+++..+++....+.+.|+++.|+.++.++++.+++.|.++|.+|.+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 77788889999999999999999999999999999999899999999999999999999999999999999999999875
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=9.6e-24 Score=236.07 Aligned_cols=279 Identities=18% Similarity=0.211 Sum_probs=255.0
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH
Q 006669 351 VVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK 428 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k 428 (636)
.+.++.|++.|.++ +++++..|+..|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 35799999999987 899999999999999998888999999999999999999999999999999999999985 6778
Q ss_pred HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
..+...|+++.|+.+|.+.+++++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+...
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88889999999999999999999999999999999765 44455556799999999999999999999999999999765
Q ss_pred -chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 508 -GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 508 -~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
+....+++.|+++.|+.+|.+.+..++..|+.+|.+++.. +.....+.+.|+++.|+.+|.++++.++..|+++|.++
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4577788899999999999999999999999999999975 55667778889999999999999999999999999999
Q ss_pred hccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
+..+++....+++.|+++.|+.++.++++.++..|.++|.++..
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 99888888888899999999999999999999999999999965
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=2.4e-23 Score=232.86 Aligned_cols=278 Identities=19% Similarity=0.226 Sum_probs=252.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCC-ChHHHHHHHHHHHHhhhC-cchHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNLSIY-ENNKG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~e~g~i~~Lv~lL~s~-d~~~~e~Av~aL~nLs~~-~~~k~ 429 (636)
.++.|++.|++++++.+..|+..|+.+... +..++..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.. ++.+.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 489999999999999999999999998643 345667788999999999999987 899999999999999984 56778
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM- 507 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~- 507 (636)
.+++.|+++.|+.+|+++++++++.|+++|.+|+... +++..+...|+++.|+.++.+.++.++..|+++|.+|+.+.
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence 8889999999999999999999999999999999874 57788888899999999999989999999999999999876
Q ss_pred chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
++.......|+++.|+.+|.+.+..++..|+++|.+|+.. ++....+.+.|+++.|+.+|.+.++.++..|+++|.+++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 5666667789999999999999999999999999999985 556778888999999999999999999999999999999
Q ss_pred ccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 587 KRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 587 ~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
.+++.....+...|+++.|+.++.++++.++..|.++|.++...
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 98888888889999999999999999999999999999999754
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=3.2e-23 Score=225.48 Aligned_cols=277 Identities=17% Similarity=0.197 Sum_probs=250.1
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHH
Q 006669 352 VAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKG 429 (636)
Q Consensus 352 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~ 429 (636)
+.++.|++.|+++ +++.+..|+..|.+++..+++++..+.+.|++|.|+.+|+++++.+++.|+.+|.+++.+ +..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 5799999999998 899999999999999998888888888999999999999999999999999999999985 56788
Q ss_pred HHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCC--chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669 430 LIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLD--ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY 506 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~ 506 (636)
.+.+.|+++.|+.+|.+ .+.+++..|+++|.+++... ..+..+. .++++.|+.++.++++.++..++++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 68999999999999998664 2222222 68999999999999999999999999999986
Q ss_pred c-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669 507 M-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584 (636)
Q Consensus 507 ~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 584 (636)
. +++..+++.|+++.|+++|.+.+..++..|+.+|.+++...+ ....+.+.|+++.|+.+|.++++..+..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5 567778889999999999999999999999999999998644 45667888999999999999899999999999999
Q ss_pred hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888888899999999999999999999999999999964
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=7.5e-23 Score=222.59 Aligned_cols=278 Identities=21% Similarity=0.227 Sum_probs=249.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCc--chH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYE--NNK 428 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~--~~k 428 (636)
+.++.|++.|++++++++..|+..|.+++..+++++..+.+.|+++.|+.+|.+ .+..++..|+.+|.+|+.+. ..+
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 579999999999999999999999999999888999999999999999999985 68999999999999999743 333
Q ss_pred HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
..+. .|+++.|+.++++++++++..++++|.+|+... +++..+...|+++.|+.+|.+.++.++..|+++|.+|+...
T Consensus 187 ~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 265 (450)
T 2jdq_A 187 FAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265 (450)
T ss_dssp GGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence 3333 789999999999999999999999999999865 45666777899999999999999999999999999999876
Q ss_pred ch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 508 GN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 508 ~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
+. ...+++.|+++.|++++.+++..++..|+++|.+++. +++....+.+.|+++.|+.+|.++++.++..|+++|.++
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 345 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55 4557788999999999999999999999999999996 567777888899999999999999999999999999999
Q ss_pred hcc-ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 586 CKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 586 ~~~-~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
+.. +++....+.+.|+++.|+.++.++++++++.|.++|.++...
T Consensus 346 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 346 TSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 976 667777788999999999999999999999999999988653
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=4.7e-23 Score=229.13 Aligned_cols=278 Identities=26% Similarity=0.285 Sum_probs=248.7
Q ss_pred CHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cch
Q 006669 350 DVVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENN 427 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~ 427 (636)
..+.++.|++.|.++ +++.+..|+..|++++.. ++++..+.+.|++|.|+.+|+++++.++..|+.+|.||+.+ +..
T Consensus 57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch
Confidence 346899999999754 899999999999999974 66999999999999999999999999999999999999985 567
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccCC-HHHHHHHHHHHHhhhh
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNGS-TRGRKDAATALFNLCI 505 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~~-~~~k~~A~~aL~nL~~ 505 (636)
+..+.+.|+++.|+.+|++++++.+..++.+|.+++.. ++++..+.+.|+++.|+.+|++++ ...+..++.+|.||+.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999875 568888899999999999999875 4556678889999999
Q ss_pred ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 506 YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 506 ~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
+++++..+++.|+++.|++++.+.+..++..++++|.+|+....... ...++++.|+.++.+.++.+++.|+++|.+|
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998654322 1237899999999999999999999999999
Q ss_pred hccChHHHHHHHHcCChHHHHHhhhc-C-CHHHHHHHHHHHHHhhcc
Q 006669 586 CKRDTENLACISRLGAVIPLTELTKS-G-TERAKRKATSLLEHLRKL 630 (636)
Q Consensus 586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~-g-~~~~k~kA~~lL~~l~~~ 630 (636)
+.++++.+..+.+.|+++.|+.++.+ + .+.++..|..+|.+|...
T Consensus 294 ~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 99888899999999999999999976 3 379999999999999753
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=1.1e-22 Score=226.08 Aligned_cols=280 Identities=21% Similarity=0.199 Sum_probs=250.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKG 429 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~ 429 (636)
.+.++.|++.|++++++.+..|+..|.+++..++.++..+.+.|++|.|+.+|.+++..++..++.+|.+|+. +++++.
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~ 179 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3679999999999999999999999999999888889999999999999999999999999999999999998 578899
Q ss_pred HHHHhCChHHHHHHHhcCc-HHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669 430 LIMLAGAIPSIVQILRAGS-MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~ 508 (636)
.+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.++++..+..++++|.||+...+
T Consensus 180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 9999999999999999875 566778899999999999999999999999999999999999999999999999997654
Q ss_pred hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHh
Q 006669 509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRT--GLPRNKENAAAILLSL 585 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L 585 (636)
... ...|+++.|++++.+.++.++..|+++|.+|+.+ ++++..+.+.|+++.|+++|.+ .++.+++.|+.+|.++
T Consensus 260 ~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 260 KQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp TCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 322 2358999999999999999999999999999986 5689999999999999999975 3379999999999999
Q ss_pred hccChH---HHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcccc
Q 006669 586 CKRDTE---NLACISRLGAVIPLTELTKSGT-ERAKRKATSLLEHLRKLPQ 632 (636)
Q Consensus 586 ~~~~~~---~~~~i~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~~~ 632 (636)
+.++++ .+..+.+.|+++.|+.++.+++ +.+++.|.++|.++....+
T Consensus 338 ~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence 987543 4667889999999999999876 5999999999999986543
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=232.89 Aligned_cols=279 Identities=23% Similarity=0.230 Sum_probs=245.7
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhhCcch
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTTD-DVMTQEHAVTAILNLSIYENN 427 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s~-d~~~~e~Av~aL~nLs~~~~~ 427 (636)
+.+.++.|+.+|+++++.++..|+..|.+++.++ .++..+... |+++.|+++|.+. ++.++..|+.+|.+|+.++++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3457999999999999999999999999999865 467767654 8999999999865 899999999999999998889
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh-
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI- 505 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~- 505 (636)
+..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ +.+..+.+.|+++.|+.+|++++++.+..++.+|.+|+.
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998774 566777788999999999999999888889999999996
Q ss_pred ccchHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH-----------------
Q 006669 506 YMGNKGRAVRAGIISALLKMLTDS-RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL----------------- 567 (636)
Q Consensus 506 ~~~n~~~lv~~g~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL----------------- 567 (636)
+++++..+++.|+++.|++++.+. ....++.++.+|.+|+.+++++..+.+.|+++.|+.++
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 567899999999999999999874 46778899999999999999999998888777776554
Q ss_pred ----------------------cCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CC-HHHHHHHHHH
Q 006669 568 ----------------------RTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GT-ERAKRKATSL 623 (636)
Q Consensus 568 ----------------------~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~-~~~k~kA~~l 623 (636)
.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++.+ ++ +.++..|..+
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 44567778888888888888778888889999999999999987 43 7999999999
Q ss_pred HHHhhc
Q 006669 624 LEHLRK 629 (636)
Q Consensus 624 L~~l~~ 629 (636)
|.+|..
T Consensus 331 L~nL~~ 336 (644)
T 2z6h_A 331 LRHLTS 336 (644)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 999975
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=206.84 Aligned_cols=194 Identities=19% Similarity=0.227 Sum_probs=176.0
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669 353 AIEALVRKLSSRSV--EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~--~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~ 429 (636)
.++.||+.|.++++ +.|..|+..|++++..++++|..+.+.|+||.||.+|+++++.+|+.|+++|.||+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 59999999999988 889999999999999999999999999999999999999999999999999999998 689999
Q ss_pred HHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc---c-------------CCHHH
Q 006669 430 LIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ---N-------------GSTRG 492 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~---~-------------~~~~~ 492 (636)
.|.+.|+|++|+++|++ ++.+++++|+.+|++||..+++|..|++. ++++|++++. . .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 99999999999999984 78999999999999999999999999874 7999999763 1 14689
Q ss_pred HHHHHHHHHhhhhcc-chHHHHHH-hchHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC
Q 006669 493 RKDAATALFNLCIYM-GNKGRAVR-AGIISALLKMLTD------SRNCMVDEALTILSVLASN 547 (636)
Q Consensus 493 k~~A~~aL~nL~~~~-~n~~~lv~-~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~ 547 (636)
+.+|..+|+||+..+ ++|..+.+ .|+|+.|+.+++. .+...+|.|+.+|.||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999855 88999988 5789999999964 3567899999999999864
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=8.1e-22 Score=225.91 Aligned_cols=280 Identities=21% Similarity=0.192 Sum_probs=249.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKG 429 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~ 429 (636)
.+.++.|++.|+++++..+..|+..|.+++..++.++..+.+.|+++.|+.+|+++++.++..++.+|.+|+. +++++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 176 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4679999999999999999999999999998888889899999999999999999998888889999999997 788899
Q ss_pred HHHHhCChHHHHHHHhcCc-HHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669 430 LIMLAGAIPSIVQILRAGS-MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~ 508 (636)
.+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.+++...+..++++|.||+....
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence 9999999999999999875 678889999999999999999999999999999999999999999999999999997653
Q ss_pred hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCC-C-HHHHHHHHHHHHHh
Q 006669 509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTG-L-PRNKENAAAILLSL 585 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~-s-~~~ke~A~~~L~~L 585 (636)
.. ....++++.|+++|.+.+..+++.|+++|.+|+.. ++++..+.+.|+++.|+.+|.+. + +.+++.|+.+|.+|
T Consensus 257 ~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 257 KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp TC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 32 22248999999999999999999999999999985 57888999999999999999863 3 79999999999999
Q ss_pred hccCh---HHHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcccc
Q 006669 586 CKRDT---ENLACISRLGAVIPLTELTKSGT-ERAKRKATSLLEHLRKLPQ 632 (636)
Q Consensus 586 ~~~~~---~~~~~i~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~~~ 632 (636)
+..++ ..+..+...|+++.|+.++.+.+ +.+++.|.++|.+|....+
T Consensus 335 ~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp TSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred hcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 97654 23455788999999999999875 6999999999999986543
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=201.85 Aligned_cols=193 Identities=17% Similarity=0.225 Sum_probs=173.9
Q ss_pred CHHHHHHhhcCCCh--HHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhH
Q 006669 395 AIPVLVNLLTTDDV--MTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKI 470 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~--~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~ 470 (636)
.+|.||.+|+++++ .++..|+..|.+|+. +++++..|.+.|+||+||.+|+++++++++.|+++|.||+.. ++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999888 889999999999997 788999999999999999999999999999999999999984 67999
Q ss_pred HHHhcCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhc----C------------CCHHH
Q 006669 471 IIGASGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT----D------------SRNCM 533 (636)
Q Consensus 471 ~i~~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~----~------------~~~~~ 533 (636)
.|.+.|+||+|+++|+ .++..+++.|+.+|+||+..+++|..+++. ++++|++++. . .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999999875 6999998763 1 25689
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHhc-CcHHHHHHHHcCC------CHHHHHHHHHHHHHhhcc
Q 006669 534 VDEALTILSVLAS-NPEAKIAIVKA-STIPVLIVLLRTG------LPRNKENAAAILLSLCKR 588 (636)
Q Consensus 534 ~~~Al~~L~~La~-~~~~~~~i~~~-g~i~~Lv~lL~~~------s~~~ke~A~~~L~~L~~~ 588 (636)
.+.|..+|.||+. ++++|..|.+. |+|+.|+.+++.+ +.+.+|+|+.+|.||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999988 67999999985 6789999999852 468899999999999864
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=1.7e-21 Score=227.86 Aligned_cols=271 Identities=24% Similarity=0.256 Sum_probs=232.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.++.+++.|.+++.+.+..++..++.. ++..+. .|++|.|+.+|.++++.++++|+.+|.+|+.++.++..+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~ 188 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 588999999999988888888888744 344554 7999999999999999999999999999999888888887
Q ss_pred H-hCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-h
Q 006669 433 L-AGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-N 509 (636)
Q Consensus 433 ~-~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n 509 (636)
. .|+++.|+++|+++ +++++.+|+.+|++|+..++++..+++.|+++.|+.+|+++++.++..|+++|.||+...+ .
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 5 58999999999876 8999999999999999998899999999999999999999999999999999999998764 5
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhc
Q 006669 510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGL-PRNKENAAAILLSLCK 587 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~ 587 (636)
+..+++.|+++.|+++|.+.+..+...++.+|.+++. +++++..+.+.|+++.|+.+|++++ ...++.|+.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 6666689999999999999899999999999999996 6889999999999999999999766 4566788999999996
Q ss_pred cChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 588 RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 588 ~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
.+..+..+++.|+++.|+.++.++++..++.|.++|.+|.+..
T Consensus 349 -~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 349 -CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp -STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 5577888899999999999999999999999999999987643
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1e-21 Score=222.54 Aligned_cols=283 Identities=16% Similarity=0.132 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCh-------------------------------------h-hHH
Q 006669 348 SGDVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRST-------------------------------------D-NRI 388 (636)
Q Consensus 348 ~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~-------------------------------------~-~r~ 388 (636)
..+.+.++.|++.+++ .+......++..|.+++...+ + ++.
T Consensus 372 ~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~ 451 (778)
T 3opb_A 372 RSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEK 451 (778)
T ss_dssp HHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHH
Confidence 3466778999999985 666678888888888875221 1 577
Q ss_pred HHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHH---HHHHHHHHHHHccCC
Q 006669 389 IIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSME---ARENAAATLFSLSLL 465 (636)
Q Consensus 389 ~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e---~~~~Aa~~L~~Ls~~ 465 (636)
.+.++|+||.|+.+++++++.+++.|+++|.||+.++++|..++++|++++|+.+|.+++.. .+.+|+.+|.+|+..
T Consensus 452 ~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis 531 (778)
T 3opb_A 452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF 531 (778)
T ss_dssp HTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999988654 899999999999876
Q ss_pred CchhHHHHh---cCchHHHHhhhccC--CH------------HHHHHHHHHHHhhhhccch-----HHHHHHh-chHHHH
Q 006669 466 DENKIIIGA---SGAIPALVDLLQNG--ST------------RGRKDAATALFNLCIYMGN-----KGRAVRA-GIISAL 522 (636)
Q Consensus 466 ~~~~~~i~~---~g~i~~Lv~LL~~~--~~------------~~k~~A~~aL~nL~~~~~n-----~~~lv~~-g~v~~L 522 (636)
.+....+.. .|++++|++||..+ .. ..+..|+.||.||+..++| |.++++. |+++.|
T Consensus 532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 655554432 29999999999832 11 3488999999999998743 7889984 999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhc------CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHH
Q 006669 523 LKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKA------STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC 595 (636)
Q Consensus 523 v~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~------g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 595 (636)
.++|.+++..++..|+.++.||+.+++++ ..+... +.++.|+.++.+++..+|..|+++|.+++..++..+..
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 99999999999999999999999999875 344322 24889999999999999999999999998888888888
Q ss_pred HHHc-CChHHHHHhhhc--CCHHHHHHHHHHHHHhhcc
Q 006669 596 ISRL-GAVIPLTELTKS--GTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 596 i~~~-G~i~~L~~Ll~~--g~~~~k~kA~~lL~~l~~~ 630 (636)
+++. ++++.|+.++++ .++.++..+..++.+|..+
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 8876 899999999999 8999999999999999863
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=2e-21 Score=227.31 Aligned_cols=277 Identities=26% Similarity=0.298 Sum_probs=246.9
Q ss_pred CHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cch
Q 006669 350 DVVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENN 427 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~ 427 (636)
..+.++.|++.|+++ +.+.+..|+..|++++. +.+++..+.+.|+|+.|+.+|+++++.++..|+.+|.||+.+ +..
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 456899999999755 89999999999999997 467899999999999999999999999999999999999985 566
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccCCH-HHHHHHHHHHHhhhh
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNGST-RGRKDAATALFNLCI 505 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~~~-~~k~~A~~aL~nL~~ 505 (636)
+..+.+.|+++.|+.+|++++..++..++.+|.+|+.. ++++..+.+.|+++.|+.+|++++. ..+..++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 77788899999999999999999999999999999864 5688888888999999999998764 456678999999999
Q ss_pred ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 506 YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 506 ~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
+..++..+++.|+++.|+.++.+.+..++..|+++|.+|+...... ....++++.|+.+|.+.++.+++.|+++|.+|
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999989999999999999999865331 11246899999999999999999999999999
Q ss_pred hccChHHHHHHHHcCChHHHHHhhhc-CC-HHHHHHHHHHHHHhhc
Q 006669 586 CKRDTENLACISRLGAVIPLTELTKS-GT-ERAKRKATSLLEHLRK 629 (636)
Q Consensus 586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~-~~~k~kA~~lL~~l~~ 629 (636)
+.++++.+..+.+.|+++.|+.++.+ ++ +.++..|..+|.+|..
T Consensus 427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 99888899999999999999999986 43 4899999999999975
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=3.4e-21 Score=188.09 Aligned_cols=195 Identities=25% Similarity=0.288 Sum_probs=179.9
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccC-CCchhH
Q 006669 393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSL-LDENKI 470 (636)
Q Consensus 393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~~~ 470 (636)
.|..+.|+.+|+++++.++..|+.+|.+|+. +++++..+.+.|+++.|+.+|++++++++..|+++|.+++. .++++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4789999999999999999999999999996 67788899999999999999999999999999999999995 456788
Q ss_pred HHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-h
Q 006669 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-P 548 (636)
Q Consensus 471 ~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~ 548 (636)
.+.+.|+++.|+.+|.++++.++..|+++|.||+... +++..+++.|+++.|++++.+++..++..|+++|.+++.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 8888999999999999999999999999999999765 4567788999999999999999999999999999999997 7
Q ss_pred hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 549 EAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 549 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
+.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 788889999999999999999999999999999999985
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=3.9e-21 Score=187.72 Aligned_cols=196 Identities=24% Similarity=0.313 Sum_probs=181.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGL 430 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~ 430 (636)
+..+.|+.+|++.+++.+..|+..|.+++..+++++..+.+.|+++.|+.+|+++++.+++.|+.+|.||+. ++.++..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 457889999999999999999999999998899999999999999999999999999999999999999996 6788899
Q ss_pred HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc-cc
Q 006669 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MG 508 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~-~~ 508 (636)
+.+.|+++.|+.+|+++++.++..|+++|.+|+..++ .+..+.+.|+++.|+.+|+++++.++..|+++|.||+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 9999999999999999999999999999999997654 556777889999999999999999999999999999987 56
Q ss_pred hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669 509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 547 (636)
++..+++.|+++.|++++.+.+..+++.|+.+|.+|+.+
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 788888999999999999999999999999999999863
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.7e-19 Score=201.68 Aligned_cols=274 Identities=16% Similarity=0.168 Sum_probs=227.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcc----
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYEN---- 426 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~---- 426 (636)
.++.+++.|.+++.+.+..|+..|..++. +++.|..+++. |+++.|+.++++ .+..+...++.+|.||+.+.+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 57788888888887889999999999997 56778888774 779999999985 788899999999999986211
Q ss_pred -----------------------------------hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHH
Q 006669 427 -----------------------------------NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKII 471 (636)
Q Consensus 427 -----------------------------------~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 471 (636)
++..+.++|+++.|+.+++++++.+++.|+++|.+|+.+.++|..
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~ 493 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ 493 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455667899999999999999999999999999999999999999
Q ss_pred HHhcCchHHHHhhhccCCHH---HHHHHHHHHHhhhhccchHHHHH--H-hchHHHHHHHhcC-CC-H------------
Q 006669 472 IGASGAIPALVDLLQNGSTR---GRKDAATALFNLCIYMGNKGRAV--R-AGIISALLKMLTD-SR-N------------ 531 (636)
Q Consensus 472 i~~~g~i~~Lv~LL~~~~~~---~k~~A~~aL~nL~~~~~n~~~lv--~-~g~v~~Lv~lL~~-~~-~------------ 531 (636)
+++.|++++|+.+|.+++.. ++..|+.||.+|....+....+- . .|+|++|+++|.. +. .
T Consensus 494 lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~ 573 (778)
T 3opb_A 494 LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573 (778)
T ss_dssp HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence 99999999999999988654 89999999999987655443331 1 4899999999972 11 1
Q ss_pred HHHHHHHHHHHHHhcCh-----hhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHH-HHHHHc-----
Q 006669 532 CMVDEALTILSVLASNP-----EAKIAIVKA-STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENL-ACISRL----- 599 (636)
Q Consensus 532 ~~~~~Al~~L~~La~~~-----~~~~~i~~~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~-~~i~~~----- 599 (636)
--+..|+.+|.|||+.+ +.|..|++. |+++.|..+|.+.++.++..|++++.||+. +++.+ ..+...
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchh
Confidence 12678999999999986 347888885 999999999999999999999999999997 44433 233221
Q ss_pred -CChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 600 -GAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 600 -G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
+.++.|+.|+.+++...|+.|.++|.++.
T Consensus 653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 653 LRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 23789999999999999999999999984
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=3.2e-18 Score=176.87 Aligned_cols=221 Identities=19% Similarity=0.127 Sum_probs=185.0
Q ss_pred hHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHH-HHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhh
Q 006669 408 VMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQ-ILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLL 485 (636)
Q Consensus 408 ~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL 485 (636)
.+.+..|+..|.+++.+.++...+.+.|++++|+. +|+++++++++.|+++|.+++.++ +++..+.+.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 35677888999999988889998999999999999 999999999999999999998765 4777888889999999999
Q ss_pred ccC-CHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHH
Q 006669 486 QNG-STRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPV 562 (636)
Q Consensus 486 ~~~-~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~ 562 (636)
+++ +..+++.|+++|.||+.+. ++...++++|+++.|+.+|.+++..++..|+++|.+|+. .++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 7899999999999999765 456778889999999999999999999999999999987 5778899999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHc--CChHHH---HHhhhcC--CHHHHHHHHHHHHHhh
Q 006669 563 LIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRL--GAVIPL---TELTKSG--TERAKRKATSLLEHLR 628 (636)
Q Consensus 563 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~--G~i~~L---~~Ll~~g--~~~~k~kA~~lL~~l~ 628 (636)
|+.+|.+.++.+++.|+.+|.+++...+......... .....| .+-++.. .....++|..++..+-
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998765554443321 111111 2223322 4677888988888664
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.80 E-value=2.7e-20 Score=155.69 Aligned_cols=74 Identities=30% Similarity=0.385 Sum_probs=69.5
Q ss_pred CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhccc
Q 006669 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNI 326 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~ 326 (636)
..+|++|.||||+++|+|||+++|||+|||.||++|+.. +.+||.|++++....+.||..++++|+.|+..|+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 467999999999999999999999999999999999984 68999999999999999999999999999988753
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.80 E-value=4.5e-20 Score=158.97 Aligned_cols=74 Identities=30% Similarity=0.402 Sum_probs=69.8
Q ss_pred CCCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcc
Q 006669 251 VLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHN 325 (636)
Q Consensus 251 ~~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~ 325 (636)
...+|++|.||||+++|+|||+++|||||||.||++||. ++.+||.|++++...+++||..+++.|+.|+..|+
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 346799999999999999999999999999999999998 47899999999999999999999999999999876
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.80 E-value=5.7e-20 Score=157.71 Aligned_cols=76 Identities=29% Similarity=0.392 Sum_probs=71.0
Q ss_pred CCCCCCcccCccchhhccCCeecCCC-chhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669 251 VLIIPADFLCPISLELMRDPVIVATG-QTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE 327 (636)
Q Consensus 251 ~~~~p~~f~CPis~~~m~dPv~~~~G-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~ 327 (636)
...+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++....++||+.+++.|+.|+..++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 34679999999999999999999999 99999999999985 679999999999999999999999999999998754
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.79 E-value=4.9e-20 Score=174.07 Aligned_cols=76 Identities=29% Similarity=0.415 Sum_probs=71.4
Q ss_pred CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE 327 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~ 327 (636)
..+|++|+||||+++|+|||+++|||||||.||++|+..++.+||+|++++...+++||+.++++|+.|+..||+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 4679999999999999999999999999999999999875568999999999999999999999999999999864
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.79 E-value=1.1e-17 Score=172.75 Aligned_cols=235 Identities=17% Similarity=0.176 Sum_probs=190.1
Q ss_pred HHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhcCCChHHHHHHHHHH
Q 006669 352 VAIEALVRKLSSR------------SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN-LLTTDDVMTQEHAVTAI 418 (636)
Q Consensus 352 ~~i~~Lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~-lL~s~d~~~~e~Av~aL 418 (636)
..++..++.|.++ +.+.+..|+..|..+.. +.+|...+...|++|.|+. +|.++++.+++.|+++|
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3466677777664 23578889999999996 6678888999999999999 99999999999999999
Q ss_pred HHhhh-CcchHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccCCHHHHHH
Q 006669 419 LNLSI-YENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKD 495 (636)
Q Consensus 419 ~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~ 495 (636)
.|++. ++..+..+++.|++++|+.+|+++ +..++.+|+++|.+++.... ....+...|+++.|+.+|++++..+++.
T Consensus 107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~ 186 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK 186 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 99998 567888999999999999999975 78999999999999987654 4566777899999999999999999999
Q ss_pred HHHHHHhhhhc-cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHhc-CcHHHH----HHHHc
Q 006669 496 AATALFNLCIY-MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP-EAKIAIVKA-STIPVL----IVLLR 568 (636)
Q Consensus 496 A~~aL~nL~~~-~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~~~~~i~~~-g~i~~L----v~lL~ 568 (636)
|+++|.+|+.. ++.+..+++.|+++.|+.+|.+.+..+++.|+.+|.+|+... ......... ..+..+ .+-++
T Consensus 187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq 266 (296)
T 1xqr_A 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 266 (296)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHcc
Confidence 99999999876 467889999999999999999999999999999999999863 333333221 122222 22333
Q ss_pred C-C-CHHHHHHHHHHHHHhhc
Q 006669 569 T-G-LPRNKENAAAILLSLCK 587 (636)
Q Consensus 569 ~-~-s~~~ke~A~~~L~~L~~ 587 (636)
. . +....+.|..++-.+..
T Consensus 267 ~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 267 QHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp TCGGGHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHHHHcC
Confidence 2 2 35666777777765553
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.72 E-value=5.5e-18 Score=139.38 Aligned_cols=75 Identities=65% Similarity=1.150 Sum_probs=71.2
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE 327 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~ 327 (636)
.+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++....+.||+.++++|+.|.++|+++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 579999999999999999999999999999999999877899999999999999999999999999999999863
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=2.3e-17 Score=169.12 Aligned_cols=77 Identities=29% Similarity=0.415 Sum_probs=72.3
Q ss_pred CCCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669 251 VLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE 327 (636)
Q Consensus 251 ~~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~ 327 (636)
...+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+++++...++||..++++|++|+..||+.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 45789999999999999999999999999999999999877777999999999999999999999999999999864
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=141.72 Aligned_cols=73 Identities=29% Similarity=0.459 Sum_probs=64.8
Q ss_pred CCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcCC-----CCCCCCCCcc---cccCCcccchhHHHHHHHHHhh
Q 006669 253 IIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDCG-----NVTCPKTQQK---LEHLTLTPNYVLRSLISQWCTM 323 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~-----~~~cP~~~~~---l~~~~l~pn~~lr~lI~~w~~~ 323 (636)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+|+.+ +...++.||..++++|+.|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999996 99999999999999753 4689995554 8889999999999999999987
Q ss_pred cc
Q 006669 324 HN 325 (636)
Q Consensus 324 n~ 325 (636)
++
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 65
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.55 E-value=1.8e-15 Score=173.27 Aligned_cols=75 Identities=28% Similarity=0.376 Sum_probs=70.2
Q ss_pred CCCCCCcccCccchhhccCCeecCCC-chhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhccc
Q 006669 251 VLIIPADFLCPISLELMRDPVIVATG-QTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNI 326 (636)
Q Consensus 251 ~~~~p~~f~CPis~~~m~dPv~~~~G-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~ 326 (636)
...+|++|+||||+++|+|||++|+| +||||++|++|+.. +.+||.|++++++..++||+++|+.|++||..++.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999998 79999999999986 67999999999999999999999999999998763
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.54 E-value=8.8e-16 Score=119.38 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=50.3
Q ss_pred cccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchh
Q 006669 257 DFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~ 312 (636)
.|.||||+++|+|||+. ++||+|||.+|++|+.. +.+||+|++++...+++||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 99999999999999985 457999999999999999864
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.52 E-value=7.8e-13 Score=146.59 Aligned_cols=277 Identities=19% Similarity=0.211 Sum_probs=221.7
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhh-Ccc
Q 006669 351 VVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSI-YEN 426 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~-~~~ 426 (636)
..+|+.|+..+.+. -.+.|+.|+..|+.+++. ++..+. .++++.|+..|+. .|.++...++.+|.++.. +++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 45799999999765 478899999999999974 444444 5679999999986 578888899999988765 221
Q ss_pred -----------------hHHHH-HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--hhHHHHhc-CchHHHHhhh
Q 006669 427 -----------------NKGLI-MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--NKIIIGAS-GAIPALVDLL 485 (636)
Q Consensus 427 -----------------~k~~I-~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~-g~i~~Lv~LL 485 (636)
+...+ .+.+.|+.|+.+|.+.+..+|.+++.+|..|+.... +...|... ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 11222 347889999999999999999999999999987654 56677766 9999999999
Q ss_pred ccCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCC----CHHHHHHHHHHHHHHhc-ChhhHHHHHhcCc
Q 006669 486 QNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDS----RNCMVDEALTILSVLAS-NPEAKIAIVKAST 559 (636)
Q Consensus 486 ~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~ 559 (636)
.+.....+-.++..|.+|+..+.+.++++. .|+++.|+.++..+ ...+++.++.+|.||.. ++.++..+.+.|+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999999999999999999999988888887 69999999999763 34688999999999998 5669999999999
Q ss_pred HHHHHHHHcCCCH------HHHHH---HHHHHHHhhcc------ChHHHHHHHHcCChHHHHHhhhcC--CHHHHHHHHH
Q 006669 560 IPVLIVLLRTGLP------RNKEN---AAAILLSLCKR------DTENLACISRLGAVIPLTELTKSG--TERAKRKATS 622 (636)
Q Consensus 560 i~~Lv~lL~~~s~------~~ke~---A~~~L~~L~~~------~~~~~~~i~~~G~i~~L~~Ll~~g--~~~~k~kA~~ 622 (636)
++.|..++..+.+ ..-.+ +..++..|+.. .+.+...+.+.|++..|+.++... ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999975421 11223 66677777765 235677889999999999998764 5677888888
Q ss_pred HHHHhhccc
Q 006669 623 LLEHLRKLP 631 (636)
Q Consensus 623 lL~~l~~~~ 631 (636)
++..+.+-+
T Consensus 336 tla~~irgN 344 (651)
T 3grl_A 336 TVSEVIRGC 344 (651)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 888776543
No 49
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.46 E-value=5.9e-14 Score=118.97 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=67.2
Q ss_pred CCCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcC-CCCCCCCCCccc-ccCCcccchhHHHHHHHHHhhccc
Q 006669 252 LIIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDC-GNVTCPKTQQKL-EHLTLTPNYVLRSLISQWCTMHNI 326 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~-~~~~cP~~~~~l-~~~~l~pn~~lr~lI~~w~~~n~~ 326 (636)
..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.+|..++++|+.|...++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 35789999999999999999999 9999999999999964 457899999997 567899999999999999987754
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.37 E-value=6.8e-11 Score=131.16 Aligned_cols=278 Identities=14% Similarity=0.133 Sum_probs=216.0
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhccChh-----------------hH-HHHHhcCCHHHHHHhhcCCChHH
Q 006669 351 VVAIEALVRKLSS--RSVEERRAAVAEIRSLSKRSTD-----------------NR-IIIADAGAIPVLVNLLTTDDVMT 410 (636)
Q Consensus 351 ~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~-----------------~r-~~i~e~g~i~~Lv~lL~s~d~~~ 410 (636)
..+++.|+..|+. .+.+....++..|.++...+++ +. ..+.+.+.|+.|+.+|.+.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 4468899999975 4777888888988776543322 11 23345688999999999999999
Q ss_pred HHHHHHHHHHhhh-Ccc-hHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhc
Q 006669 411 QEHAVTAILNLSI-YEN-NKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQ 486 (636)
Q Consensus 411 ~e~Av~aL~nLs~-~~~-~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~ 486 (636)
+..++.+|..|+. .++ +++.|.. .++|+.|+.+|.+....+|..|+..|.+|+..+.+..+++.. |+++.|+.+++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998 444 7888885 699999999999989999999999999999988776666655 99999999998
Q ss_pred cCC----HHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCH------HHHHH---HHHHHHHHhcC-----
Q 006669 487 NGS----TRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRN------CMVDE---ALTILSVLASN----- 547 (636)
Q Consensus 487 ~~~----~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~------~~~~~---Al~~L~~La~~----- 547 (636)
... ..+..+++.+|.||..++ .|+..+.+.|.++.|..+|..+++ ....+ ++.++..|+..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 643 367889999999998876 588899999999999999964321 12233 66677777663
Q ss_pred --hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhccChHHHHHHHHcC-----ChHH----HHHhhhcC-C
Q 006669 548 --PEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLSLCKRDTENLACISRLG-----AVIP----LTELTKSG-T 613 (636)
Q Consensus 548 --~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G-----~i~~----L~~Ll~~g-~ 613 (636)
+.++.++.+.|+++.|++++... +..++..|+.++..++++++.....+.+.. ..+. |+.++.+. .
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 24678899999999999999864 578999999999999999998888876543 2233 33444443 4
Q ss_pred HHHHHHHHHHHHHhh
Q 006669 614 ERAKRKATSLLEHLR 628 (636)
Q Consensus 614 ~~~k~kA~~lL~~l~ 628 (636)
...|-.|...++..-
T Consensus 379 ~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 379 FVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777777553
No 51
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.34 E-value=3.4e-13 Score=120.94 Aligned_cols=70 Identities=17% Similarity=0.326 Sum_probs=63.9
Q ss_pred CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc-CCcccchhHHHHHHHHHhh
Q 006669 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH-LTLTPNYVLRSLISQWCTM 323 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~pn~~lr~lI~~w~~~ 323 (636)
+++++.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..++++++.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 467899999999999999999999999999999998767799999999987 7899999999999998743
No 52
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.1e-13 Score=133.38 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=64.2
Q ss_pred CCCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCC-CCCCCC--CCcccccCCcccchhHHHHHHHHHhh
Q 006669 253 IIPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCG-NVTCPK--TQQKLEHLTLTPNYVLRSLISQWCTM 323 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~-~~~cP~--~~~~l~~~~l~pn~~lr~lI~~w~~~ 323 (636)
....+|.||||+++|+|||+. .|||+|||.||.+||..+ ..+||+ |++.+...++.||..++++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 457899999999999999985 999999999999999863 468999 88999999999999999999999764
No 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.29 E-value=1e-12 Score=121.67 Aligned_cols=69 Identities=22% Similarity=0.445 Sum_probs=63.7
Q ss_pred CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccC-CcccchhHHHHHHHHHh
Q 006669 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL-TLTPNYVLRSLISQWCT 322 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~-~l~pn~~lr~lI~~w~~ 322 (636)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++... .+.+|..+++++..|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999997777999999999877 89999999999998874
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.25 E-value=3.3e-10 Score=110.18 Aligned_cols=190 Identities=21% Similarity=0.207 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG 429 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~ 429 (636)
+...++.|++.|+++++.++..|+..|..+.. ..+++.|+.+|.++++.++..|+.+|.++..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 44579999999999999999999999887753 3578999999999999999999999987752
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN 509 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n 509 (636)
.++++.|+..|++.++.++..|+.+|..+.. ...++.|+.++.+.++.++..|+.+|.++..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 4578999999999999999999999998743 3578999999999999999999999999842
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669 510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 589 (636)
..+++.|.+++.+.++.++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|..+..++
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3588999999999999999999999998853 346788889999899999999999999887654
Q ss_pred h
Q 006669 590 T 590 (636)
Q Consensus 590 ~ 590 (636)
+
T Consensus 206 ~ 206 (211)
T 3ltm_A 206 H 206 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.24 E-value=3.8e-10 Score=114.72 Aligned_cols=224 Identities=12% Similarity=0.054 Sum_probs=160.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.++.|++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++...+.....
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-- 90 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-- 90 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH--
Confidence 58899999999999999999999988762 23578899999999999999999999888643322111
Q ss_pred HhCChHHHH-HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669 433 LAGAIPSIV-QILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511 (636)
Q Consensus 433 ~~G~I~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~ 511 (636)
.++.+. .++++.++.++..++.+|.++...+.. ....+++.|+.++.+.++.++..|+.+|.++..
T Consensus 91 ---l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------ 157 (280)
T 1oyz_A 91 ---VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND------ 157 (280)
T ss_dssp ---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------
Confidence 223333 235667889999999999988532210 112467888888888888999999999888743
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE 591 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 591 (636)
.++++.|+.++.+++..++..|+.+|..+.... ..+++.|+.++.+.++.++..|+.+|..+..
T Consensus 158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---- 221 (280)
T 1oyz_A 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---- 221 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----
Confidence 247888899888888888888888888874321 1356778888887788888888888887762
Q ss_pred HHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 592 NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 592 ~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
..+++.|..++.+.+ ++..|..+|..+
T Consensus 222 -------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 222 -------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp -------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred -------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 234555555554432 455555555544
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.22 E-value=8.8e-10 Score=106.25 Aligned_cols=187 Identities=21% Similarity=0.211 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK 428 (636)
Q Consensus 349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k 428 (636)
......+.+++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 345678999999999999999999999987753 2568999999999999999999999987642
Q ss_pred HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~ 508 (636)
..+++.|+..|.+.++.++..|+.+|..+.. ..+++.|+.++.+.++.++..|+.+|.++..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 3578999999999999999999999998742 3578999999999999999999999998842
Q ss_pred hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
..+++.|..++.+.+..++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998832 236788889998889999999999998764
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.21 E-value=5.5e-10 Score=108.54 Aligned_cols=188 Identities=20% Similarity=0.203 Sum_probs=159.5
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669 393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII 472 (636)
Q Consensus 393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 472 (636)
.+.++.|+..|.++++.++..|+..|..+.. .++++.|+..|.++++.++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4578999999999999999999999987643 4678999999999999999999999988742
Q ss_pred HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Q 006669 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI 552 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~ 552 (636)
.++++.|+.+|.+.++.++..|+.+|.++.. .++++.|++++.+++..++..|+.+|..+..
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 3678999999999999999999999998743 3588999999999999999999999998853
Q ss_pred HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 553 AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 553 ~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.+|..|..+|..+....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3578999999988899999999999998853 235778889999999999999999999887644
No 58
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.20 E-value=8.2e-12 Score=107.19 Aligned_cols=70 Identities=19% Similarity=0.353 Sum_probs=63.9
Q ss_pred CCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669 254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH 324 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n 324 (636)
+++++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|+.++...++.+|+.++++++.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 46789999999999999998 99999999999999984 579999999999889999999999999998654
No 59
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.17 E-value=5.2e-12 Score=111.58 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=61.6
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc-------CCcccchhHHHHHHHHHh
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH-------LTLTPNYVLRSLISQWCT 322 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~-------~~l~pn~~lr~lI~~w~~ 322 (636)
...++|.||||++.+.+||+++|||+||+.||.+|+..+..+||.|++.+.. ..+..|..+..+|++|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 3457899999999999999999999999999999998778899999998864 556678889999988863
No 60
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.16 E-value=1.3e-11 Score=107.73 Aligned_cols=69 Identities=10% Similarity=0.337 Sum_probs=61.2
Q ss_pred CCCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccC----CcccchhHHHHHHHHHh
Q 006669 253 IIPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL----TLTPNYVLRSLISQWCT 322 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~----~l~pn~~lr~lI~~w~~ 322 (636)
.+++++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|+..+... .+.+|..+.++++.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 347789999999999999998 99999999999999985 48899999998765 67899999999988753
No 61
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=106.44 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=62.4
Q ss_pred CCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhh
Q 006669 254 IPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTM 323 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~ 323 (636)
+.+++.||||++.|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+.+|..+..++++.-..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4678999999999999999 999999999999999987667999999999999999998888877766543
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.16 E-value=2e-09 Score=103.66 Aligned_cols=185 Identities=20% Similarity=0.204 Sum_probs=159.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG 473 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~ 473 (636)
+..+.++.+|.++++.++..|+.+|..+.. .++++.|+..|.++++.++..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 457889999999999999999999987653 3578999999999999999999999987742
Q ss_pred hcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Q 006669 474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIA 553 (636)
Q Consensus 474 ~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~ 553 (636)
..+++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.++.+.++.++..|+.+|..+..
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 3578999999999999999999999998743 3588999999999999999999999998853
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 554 IVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 554 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
...++.|+.++.+.++.++..|+.+|..+.. ..+++.|..++.++++.++..|..+|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578999999998899999999999998842 2267788889999999999999999998764
No 63
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=2.2e-12 Score=105.85 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=56.5
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCC------CCCCCCCCcccccCCcccchhHHHH
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG------NVTCPKTQQKLEHLTLTPNYVLRSL 316 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~------~~~cP~~~~~l~~~~l~pn~~lr~l 316 (636)
.+.+++.||||++.+.||++++|||+||+.||.+|+... ..+||.|++++...++.+|+.++++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 467889999999999999999999999999999999753 6789999999988888888776543
No 64
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=9.6e-12 Score=103.29 Aligned_cols=64 Identities=27% Similarity=0.545 Sum_probs=56.6
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC-----CCCCCCCCCcccccCCcccchhHHHH
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC-----GNVTCPKTQQKLEHLTLTPNYVLRSL 316 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-----~~~~cP~~~~~l~~~~l~pn~~lr~l 316 (636)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++....+.+|+.++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 46788999999999999999999999999999999976 26789999999998888888776543
No 65
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.12 E-value=2.1e-11 Score=114.82 Aligned_cols=69 Identities=23% Similarity=0.515 Sum_probs=61.6
Q ss_pred CCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccc-cCCcccchhHHHHHHHHHh
Q 006669 254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLE-HLTLTPNYVLRSLISQWCT 322 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~-~~~l~pn~~lr~lI~~w~~ 322 (636)
+.+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++. ...+.+|..+.++|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45678999999999999997 999999999999999977889999999984 4568899999999998854
No 66
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=2e-11 Score=108.11 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=62.4
Q ss_pred CCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669 254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH 324 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n 324 (636)
+.+++.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++...++.+|+.+++++..+....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 46789999999999999999 9999999999999997 78999999998889999999999999887653
No 67
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.11 E-value=2.2e-11 Score=108.01 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=62.0
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHH
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQW 320 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w 320 (636)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.++..+++.|.++
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 56789999999999999999999999999999999987666999999999988888998888888765
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.10 E-value=7.7e-09 Score=105.00 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=159.3
Q ss_pred HhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH
Q 006669 391 ADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI 470 (636)
Q Consensus 391 ~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 470 (636)
...+.++.|+..|.++++.++..|+.+|.++.. .++++.|+.+|+++++.++..|+.+|..+...+....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 345789999999999999999999999988762 3468899999999999999999999999864432211
Q ss_pred HHHhcCchHHHHh-hhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669 471 IIGASGAIPALVD-LLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE 549 (636)
Q Consensus 471 ~i~~~g~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~ 549 (636)
..++.|.. ++.+.++.++..++.+|.++....+. ....+++.|+.++.++++.++..|+.+|.++..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 12233332 35677899999999999998743321 123578999999999999999999999987653
Q ss_pred hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 550 AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 550 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
..+++.|+.++.+.++.++..|+.+|..+...++ .+++.|..++.+.++.+|..|..+|..+..
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 3589999999999999999999999998864433 256788889999999999999999998864
No 69
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.6e-11 Score=101.90 Aligned_cols=64 Identities=20% Similarity=0.489 Sum_probs=56.7
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC-----CCCCCCCCCcccccCCcccchhHHHH
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC-----GNVTCPKTQQKLEHLTLTPNYVLRSL 316 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-----~~~~cP~~~~~l~~~~l~pn~~lr~l 316 (636)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++.+...++.+|+.++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 56788999999999999999999999999999999975 36789999999998888888776543
No 70
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.5e-11 Score=93.15 Aligned_cols=54 Identities=11% Similarity=0.276 Sum_probs=48.7
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT 306 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 306 (636)
.+++++.||||++.++|||+++|||+|++.||.+|+..+..+||.|++++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 457889999999999999999999999999999999766788999999886644
No 71
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.07 E-value=8.1e-11 Score=95.27 Aligned_cols=52 Identities=29% Similarity=0.503 Sum_probs=46.1
Q ss_pred CCCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcCC-CCCCCCCCcccc
Q 006669 252 LIIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDCG-NVTCPKTQQKLE 303 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~-~~~cP~~~~~l~ 303 (636)
..+++++.||||++.|.|||+++ |||+||+.||.+|+... ..+||.|++++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 35688999999999999999999 99999999999999753 468999999754
No 72
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.06 E-value=5.9e-11 Score=108.30 Aligned_cols=64 Identities=19% Similarity=0.435 Sum_probs=52.4
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHH
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWC 321 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~ 321 (636)
.+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++.... +|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHHH
Confidence 467899999999999999999999999999999974 678999999886532 3555555666554
No 73
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.3e-11 Score=97.29 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=51.1
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhH
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~l 313 (636)
...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.+|..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHH
Confidence 34678999999999999999999999999999999974 678999999986 566677544
No 74
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=7.3e-11 Score=103.49 Aligned_cols=68 Identities=18% Similarity=0.402 Sum_probs=59.4
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCC--CCCCCCCCcccccCCcccchhHHHHHHHHHh
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG--NVTCPKTQQKLEHLTLTPNYVLRSLISQWCT 322 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~ 322 (636)
.+++.||||++.+.||++++|||+||+.||.+|+..+ ..+||.|+.++....+.+|..+.++++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999853 3589999999999899999877777776654
No 75
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.04 E-value=1.2e-09 Score=128.60 Aligned_cols=271 Identities=16% Similarity=0.096 Sum_probs=194.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD--AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK 428 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e--~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k 428 (636)
..++.+++.+++.+.++|..|+..|..+....+. .+.. ...++.|+.++.++++.++..|+.+|.+++.. +..-
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 4678888888889999999999999887754332 1111 24678888888888999999999999999873 2211
Q ss_pred HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhh-----------cc--------
Q 006669 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLL-----------QN-------- 487 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL-----------~~-------- 487 (636)
...+ .+.++.++.++.+.+.+++..|+.++..++.....+..+... ..++.++..+ .+
T Consensus 251 ~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 251 LPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 1111 246777888888888999999999999998655433332221 4566666666 22
Q ss_pred ---CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHH
Q 006669 488 ---GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLI 564 (636)
Q Consensus 488 ---~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv 564 (636)
.+...++.|+.+|..|+...+. .++ ..+++.+.+++.+.+...++.|+.+|.+++........-.-..+++.++
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 1234588888999888764432 122 3477888888888899999999999999998654321111235788899
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 565 VLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 565 ~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
..+.+.++.+|..|+++|.+++...+.......-.++++.|+..+.+.+++++..|.++|..+.+
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99988899999999999999886422211111122467888888888999999999999998864
No 76
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.7e-10 Score=92.87 Aligned_cols=55 Identities=20% Similarity=0.514 Sum_probs=48.4
Q ss_pred CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC--CCCCCCCCCcccccCC
Q 006669 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC--GNVTCPKTQQKLEHLT 306 (636)
Q Consensus 252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~--~~~~cP~~~~~l~~~~ 306 (636)
..+.+++.||||++.+.||++++|||+||+.||.+|+.. +..+||.|++++...+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 356789999999999999999999999999999999973 5678999999886544
No 77
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.9e-10 Score=91.43 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=50.8
Q ss_pred CCCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669 253 IIPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN 310 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 310 (636)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++...++.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 457889999999999999997 99999999999999975 6789999999987777655
No 78
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.00 E-value=9.2e-11 Score=103.68 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=55.6
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc-chhHHHHHHH
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP-NYVLRSLISQ 319 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~ 319 (636)
.++++|.||||++.|.|||+++|||+||+.||.+|+..++.+||.|+.++...++.+ +..+.+++.+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 345689999999999999999999999999999999876789999999998777654 4445555543
No 79
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=3e-10 Score=89.34 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=49.5
Q ss_pred CcccCccchh-hccCC----eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669 256 ADFLCPISLE-LMRDP----VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN 310 (636)
Q Consensus 256 ~~f~CPis~~-~m~dP----v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 310 (636)
+++.||||++ .+.+| ++++|||+|++.||.+|+..+..+||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777889999999988777765
No 80
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.98 E-value=3.8e-09 Score=124.39 Aligned_cols=272 Identities=14% Similarity=0.109 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHH--HH--hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRII--IA--DAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK 428 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~--i~--e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k 428 (636)
.++.|++.+.+++...+..|+..|..+++..+..-.. +. -...++.|+.++.+.++.++..|+.+|.++.......
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 6899999999999999999999999998754332110 00 1235777888888889999999999998877532221
Q ss_pred HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh--cCchHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA--SGAIPALVDLLQNGSTRGRKDAATALFNLCIY 506 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~ 506 (636)
..-.-.+.++.+...+.+++++++..|+.+|..++..... .+.. .+.++.++.++++.++.++..|+..+.+++..
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 1000135678888888888999999999999999764322 1211 15777888888888899999999999998865
Q ss_pred cchHHHHH--HhchHHHHHHHh-----------cC-----------CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHH
Q 006669 507 MGNKGRAV--RAGIISALLKML-----------TD-----------SRNCMVDEALTILSVLASNPEAKIAIVKASTIPV 562 (636)
Q Consensus 507 ~~n~~~lv--~~g~v~~Lv~lL-----------~~-----------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~ 562 (636)
...+..+- -...+|.++..+ .+ .+..++..|..+|..++..... .+.. ..++.
T Consensus 287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~ 363 (852)
T 4fdd_A 287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPL 363 (852)
T ss_dssp TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHH
Confidence 43333221 135678888877 22 1223567788888888764321 1211 35677
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 563 LIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 563 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
+..++.+.++..|+.|+.+|.+++.+.++.... .-.++++.|..++.+.++.+|..|.++|..+..+
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 778888888999999999999999876653332 2245788999999999999999999999988764
No 81
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.3e-10 Score=88.52 Aligned_cols=46 Identities=24% Similarity=0.621 Sum_probs=41.6
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC--CCCCCCCC
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC--GNVTCPKT 298 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~--~~~~cP~~ 298 (636)
.+.+++.||||++.+.|||+++|||+|++.||.+|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 56789999999999999999999999999999999974 45689986
No 82
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.95 E-value=2.4e-10 Score=108.02 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHH
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQW 320 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w 320 (636)
.++++|.||||+++|.|||.++|||+||+.||.+|+..+..+||.|+.++....+.++..+++.|.++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 56889999999999999999999999999999999987667999999999988888998888777653
No 83
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.92 E-value=1.6e-10 Score=105.70 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=54.3
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccc---------cCCcccchhHHHHHH
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE---------HLTLTPNYVLRSLIS 318 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~---------~~~l~pn~~lr~lI~ 318 (636)
.++++|.||||+++|.|||.++|||+||+.||.+|+..+..+||.|+.++. ...+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 467899999999999999999999999999999999877779999998643 223446666666554
No 84
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.89 E-value=5.6e-08 Score=108.46 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=189.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
.++.+++.++..+++++..|+..|..++..... .+....-...+|.+..++.+.++.++..++.+|..++..-... .
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~ 359 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--N 359 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--H
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--H
Confidence 578888899999999999999999988764321 1211222356788889999889999999999999887521111 1
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~ 511 (636)
.....++.+..++++.+++++..++.+|..+...-... ......+|.|..++.+.+++++..++.+|..++..-+..
T Consensus 360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~- 436 (588)
T 1b3u_A 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE- 436 (588)
T ss_dssp HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG-
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH-
Confidence 22347788889998888999999988887765322111 112356788888888888999999999998886432211
Q ss_pred HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE 591 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~ 591 (636)
.....+++.++..+.+.+..+++.|+.+|..++...... ......+|.|+.++.+.+...|..++.++..++..-+.
T Consensus 437 -~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~ 513 (588)
T 1b3u_A 437 -FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513 (588)
T ss_dssp -GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH
Confidence 122347788888898888899999999999887643221 11235677887777777788888888888887753221
Q ss_pred HHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 592 NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 592 ~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
......+++.|..++.+.++.+|..+.++|..+.+
T Consensus 514 ---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 514 ---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp ---HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 11234577888888888888888888888887765
No 85
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.88 E-value=3e-08 Score=110.73 Aligned_cols=263 Identities=15% Similarity=0.074 Sum_probs=195.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.++.+...+++.++.++..++..|..++..-.. .. .....+|.+..+++.+++.++..++.+|..+...-... . .
T Consensus 325 l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~-~ 399 (588)
T 1b3u_A 325 ILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q-L 399 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H-H
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-H-H
Confidence 567778888899999999999988888753211 11 12347888999999888999999999888876522111 1 1
Q ss_pred HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669 433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR 512 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~ 512 (636)
....++.+..++++.++.++..++.+|..++..-... ......++.+..++.+.+..++..|+.+|..++..-+..
T Consensus 400 ~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-- 475 (588)
T 1b3u_A 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE-- 475 (588)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--
Confidence 2346788888888889999999999999886321100 111246788888999989999999999999987654332
Q ss_pred HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHH
Q 006669 513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTEN 592 (636)
Q Consensus 513 lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~ 592 (636)
.....++|.|..++.+.+..++..++.++..++..-.. .......+|.|+..+....+.+|..++.+|..++..-+..
T Consensus 476 ~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh
Confidence 22356888899888888899999999999998874221 1223467899999998888999999999999998654332
Q ss_pred HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 593 LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 593 ~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
.....+++.|..+..+.+..+|..|..+|..+.+
T Consensus 554 ---~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 554 ---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp ---HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred ---hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 2224467778888888999999999999988764
No 86
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.85 E-value=9.1e-10 Score=88.05 Aligned_cols=58 Identities=21% Similarity=0.433 Sum_probs=51.4
Q ss_pred CCCCcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccch
Q 006669 253 IIPADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY 311 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~ 311 (636)
...+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|+.++....+.+++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 446789999999999999 89999999999999999975 47999999999888887764
No 87
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.83 E-value=2.4e-08 Score=114.85 Aligned_cols=195 Identities=15% Similarity=0.125 Sum_probs=153.9
Q ss_pred hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHH-hhhccCCHHHHHHHHHHHHhhhhcc--chH
Q 006669 434 AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALV-DLLQNGSTRGRKDAATALFNLCIYM--GNK 510 (636)
Q Consensus 434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv-~LL~~~~~~~k~~A~~aL~nL~~~~--~n~ 510 (636)
...|.+++..|++++++.|..|+.+|.+|+.+.+.+..+...+++..++ .+|.+.+..++..|+++|.||+... +.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3456778888999999999999999999998888888888888888764 5788889999999999999999764 567
Q ss_pred HHHHHhchHHHHHHHhcCCC---------------------HHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHc
Q 006669 511 GRAVRAGIISALLKMLTDSR---------------------NCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLR 568 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~~~---------------------~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~ 568 (636)
..+++.|++++|..++.... ..+.+.++.+|++||. +.+....+...++++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 88999999999999885310 1245678899999997 4556778888899999998885
Q ss_pred C---CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHh--hhcCCHHHHHHHHHHHHHhh
Q 006669 569 T---GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL--TKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 569 ~---~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~L--l~~g~~~~k~kA~~lL~~l~ 628 (636)
. .+..++..|+.+|..++..++.....+...|....+..+ +..+++..+.-+..+|.++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3 246889999999999999999888888877654322222 23444455677888888764
No 88
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.5e-09 Score=81.81 Aligned_cols=46 Identities=26% Similarity=0.720 Sum_probs=41.3
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC--CCCCCCCC
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC--GNVTCPKT 298 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~--~~~~cP~~ 298 (636)
.+.+++.||||++.+.+|++++|||+|++.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999999999999999999999999865 56789986
No 89
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.79 E-value=2.5e-08 Score=107.86 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=185.9
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhC-cc
Q 006669 353 AIEALVRKLSSR--SVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIY-EN 426 (636)
Q Consensus 353 ~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~-~~ 426 (636)
.++.|++.+.++ ++..+..|+..|..+++.. ++.-.... ...++.++.+|.+. ++.++..|+.++.++... ..
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 689999999988 8999999999999998643 21100001 13577888888877 689999999999986542 11
Q ss_pred hH-HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh--HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669 427 NK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK--IIIGASGAIPALVDLLQNGSTRGRKDAATALFNL 503 (636)
Q Consensus 427 ~k-~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL 503 (636)
+- ......-.++.+...+.+++++++..++.+|..+....... ..+ ..+.++.++..+++.++.++..|+..+.++
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 10 00011113455555666678999999999999886543211 111 115667777777888899999999998888
Q ss_pred hhccc------------------hHHHHHH---hchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHH
Q 006669 504 CIYMG------------------NKGRAVR---AGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIV 555 (636)
Q Consensus 504 ~~~~~------------------n~~~lv~---~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~ 555 (636)
+.... ....+++ ..++|.+++.+.+ .+...+..|..+|..++..-.. .+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~ 364 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV 364 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH
Confidence 75420 0011121 3467788888753 2346788889999888874321 222
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 556 KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 556 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
..+++.+...+.+.++..|+.|+.+|..++.+.. +..... -..+++.|..++.+.++.+|..|.++|..+..+
T Consensus 365 -~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2456777778888889999999999999997533 111111 146789999999999999999999999998764
No 90
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.5e-09 Score=86.95 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=45.5
Q ss_pred CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccC
Q 006669 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL 305 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 305 (636)
..+++.||||++.+.|||+++|||+|++.||.+|+.. +.+||+|++.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 3577999999999999999999999999999999975 47899999987643
No 91
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=5e-09 Score=87.41 Aligned_cols=53 Identities=21% Similarity=0.459 Sum_probs=47.0
Q ss_pred CCCCcccCccchhhccC----CeecCCCchhhhHHHHHHHcCC--CCCCCCCCcccccC
Q 006669 253 IIPADFLCPISLELMRD----PVIVATGQTYERSYIQRWIDCG--NVTCPKTQQKLEHL 305 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~ 305 (636)
.+.+++.||||++.+.+ |++++|||+||+.||.+|+..+ ..+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45788999999999999 9999999999999999999854 57899999987654
No 92
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.76 E-value=4.2e-07 Score=102.64 Aligned_cols=263 Identities=14% Similarity=0.128 Sum_probs=182.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcc-hHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYEN-NKGL 430 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~-~k~~ 430 (636)
..++.+.+.|.+.++.+|..|+.++..+.+.+++. +.+.+.++.|..+|.+.++.++.+|+.+|.+++.+.. ....
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 35677889999999999999999999998866552 2335778999999999999999999999999987432 1000
Q ss_pred HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc---c
Q 006669 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY---M 507 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~---~ 507 (636)
-...+.+..|+..+...++-.+...+.+|..+...++.. ....++.+..++++.++.++..|+.++.++... +
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC
Confidence 011234667777777788888888888888887543311 124678888888888899999999999998632 2
Q ss_pred chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-Chh------------------hHH-H---H---HhcC---
Q 006669 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPE------------------AKI-A---I---VKAS--- 558 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~------------------~~~-~---i---~~~g--- 558 (636)
+.....+-..+++.|+.++ +.++.++..|+..|..++. +|+ .|. + + ....
T Consensus 274 ~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~ 352 (591)
T 2vgl_B 274 SDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 352 (591)
T ss_dssp TBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHH
Confidence 2222222344667777665 4677888888888887764 111 111 1 1 1222
Q ss_pred -cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 559 -TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 559 -~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
.++.|..++.+.++..+..++..+..++...+.... ..++.|+.++....+.++..+...++.+
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 345566666677889999999999999987654332 2457777777777777766666666554
No 93
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.75 E-value=7.4e-09 Score=84.37 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=47.4
Q ss_pred CCCCcccCccchhhc--cCCeecC--CCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669 253 IIPADFLCPISLELM--RDPVIVA--TGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL 307 (636)
Q Consensus 253 ~~p~~f~CPis~~~m--~dPv~~~--~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 307 (636)
...+++.||||++.+ .||++.| |||+||+.||.+|+..+...||.|++++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 457889999999999 5777777 999999999999998777899999998876544
No 94
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.75 E-value=2.1e-09 Score=83.91 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=48.8
Q ss_pred CcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccch
Q 006669 256 ADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY 311 (636)
Q Consensus 256 ~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~ 311 (636)
+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|+.++...++.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 468899999999998 89999999999999999985 67999999999887776653
No 95
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.74 E-value=6.2e-08 Score=111.38 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=147.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHH-HHhcCcHHHHHHHHHHHHHccCCC--chhHH
Q 006669 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQ-ILRAGSMEARENAAATLFSLSLLD--ENKII 471 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~ 471 (636)
.|.+++..|++.++..+..|+.+|.||+.++..+..+...|+|..++. +|.+.+.+++..|+++|.||+... +.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 456677889999999999999999999998888999999999887665 677789999999999999998764 56778
Q ss_pred HHhcCchHHHHhhhccC--------------C-------HHHHHHHHHHHHhhhhccc-hHHHHHHhchHHHHHHHhcC-
Q 006669 472 IGASGAIPALVDLLQNG--------------S-------TRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKMLTD- 528 (636)
Q Consensus 472 i~~~g~i~~Lv~LL~~~--------------~-------~~~k~~A~~aL~nL~~~~~-n~~~lv~~g~v~~Lv~lL~~- 528 (636)
+.+.|++++|..+++.. . .....+++.+|.+||...+ ....+...+.++.|+..|.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 89999999999998631 1 1233467788899986553 45677788999999999844
Q ss_pred --CCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcH---HHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 529 --SRNCMVDEALTILSVLASN-PEAKIAIVKASTI---PVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 529 --~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
...++...|+.+|..++.. ++....+.+.+.. ..+..+.. .+...+..++.+|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence 4578999999999999985 5556667665532 33333333 33444667889998875
No 96
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=6.7e-09 Score=82.31 Aligned_cols=51 Identities=20% Similarity=0.427 Sum_probs=45.6
Q ss_pred CCCCcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 253 IIPADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
..++++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 457889999999999998 89999999999999999985 6789999988753
No 97
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.62 E-value=2.8e-08 Score=80.91 Aligned_cols=57 Identities=18% Similarity=0.360 Sum_probs=47.7
Q ss_pred CCCCcccCccchhhccCC---eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669 253 IIPADFLCPISLELMRDP---VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN 310 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dP---v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 310 (636)
...+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|+.++......+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 345678999999999877 44699999999999999974 5799999999887766554
No 98
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.60 E-value=5.6e-07 Score=101.62 Aligned_cols=253 Identities=17% Similarity=0.147 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHH-hccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSL-SKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKG 429 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L-a~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~ 429 (636)
+.+..+-+.|++++.+.+..++..+-.+ ..+.+ . ..+.+.+++++.+++...+..+..++.+++.. ++..
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~- 84 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-V------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA- 84 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-C------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-h------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-
Confidence 4578888999999988888887766544 33221 1 23567788999999999998888888887662 2211
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN 509 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n 509 (636)
.-++..+..-|.++++..+..|+.+|.++.. .+.. ...++.+..++.+.++.+++.|+.++.++....+.
T Consensus 85 ----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~ 154 (591)
T 2vgl_B 85 ----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ 154 (591)
T ss_dssp ----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC
T ss_pred ----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh
Confidence 1245666667778899999999999999862 2211 13457788999999999999999999999875433
Q ss_pred HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669 510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588 (636)
Q Consensus 510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 588 (636)
.+.+.+.++.|.++|.+.++.++..|+.+|..++...... ......+.+..|+..+...++..+...+.+|..++..
T Consensus 155 --~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 155 --MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp --CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC
T ss_pred --hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC
Confidence 2233688999999999999999999999999999854311 0001113466777777778888888888888888865
Q ss_pred ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 589 DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 589 ~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
++.... ..++.+..++++.++.++..|.+++..+..
T Consensus 233 ~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 233 DDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp SHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred ChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 554333 246677777888888888888888887753
No 99
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.51 E-value=3e-08 Score=89.22 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=48.9
Q ss_pred CCcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669 255 PADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN 310 (636)
Q Consensus 255 p~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn 310 (636)
++++.||||++.+.|| ++++|||+|++.||.+|+.. +.+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 6789999999999999 99999999999999999985 4699999999987666554
No 100
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.51 E-value=1.9e-06 Score=100.92 Aligned_cols=273 Identities=14% Similarity=0.107 Sum_probs=184.8
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch
Q 006669 352 VAIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN 427 (636)
Q Consensus 352 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~-~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~ 427 (636)
..++.+++.+.+. +.+++..|++.+..+...-..+-. .......++.+...+.+.+.+++..++.+|..+.. .+..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 3567778888776 688999999999987753221100 00111246677777777888999999999999886 3332
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-------------------hhHHHH--hcCchHHHHhhhc
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-------------------NKIIIG--ASGAIPALVDLLQ 486 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-------------------~~~~i~--~~g~i~~Lv~LL~ 486 (636)
-...+....++.++..+.+.+..++..|+.++..++.... ....+. -...++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 1222233667888887877788999999988888754310 000010 0235666777775
Q ss_pred c-------CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--hHHHHHhc
Q 006669 487 N-------GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE--AKIAIVKA 557 (636)
Q Consensus 487 ~-------~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~~~~i~~~ 557 (636)
. .+...++.|+.+|..++...+. .++ ..+++.+...+.+.+..+++.|+.+|..++.... ...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 3457888888999888754332 122 3567777888888899999999999999998532 222222 3
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHH--HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENL--ACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~--~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
..++.++..+.+.++.+|..|+++|.+++...+... ... -..+++.|+..+.+. ++++..|.++|..+.+.
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 578899999988889999999999999987543211 000 123466777777764 88999999999887653
No 101
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.48 E-value=5.8e-08 Score=73.24 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=41.7
Q ss_pred CcccCccchhhccC----CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 256 ADFLCPISLELMRD----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 256 ~~f~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.|+++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999977 8889999999999999999865 88999998764
No 102
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=76.58 Aligned_cols=52 Identities=17% Similarity=0.437 Sum_probs=44.6
Q ss_pred CCCCcccCccchhhccCCeec---CCCchhhhHHHHHHHcCCCCCCCCCCcccccC
Q 006669 253 IIPADFLCPISLELMRDPVIV---ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL 305 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~---~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 305 (636)
....+..||||++.+.+|+.+ +|||+|++.||.+|+.. +.+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 456788999999999888766 99999999999999985 45899999987653
No 103
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2.7e-08 Score=79.20 Aligned_cols=52 Identities=17% Similarity=0.439 Sum_probs=46.0
Q ss_pred CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669 253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT 306 (636)
Q Consensus 253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 306 (636)
...+++.||||++.+.+ ++++|||+|++.||.+|+. .+.+||.|++++....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 9999999999999999998 5789999998876544
No 104
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.46 E-value=4.1e-06 Score=98.15 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=185.1
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhC-c
Q 006669 353 AIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRIIIAD--AGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIY-E 425 (636)
Q Consensus 353 ~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~e--~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~-~ 425 (636)
.++.|++.+.++ ++..+..++..+..++..... ..+.. ...++.+...+..+ +..++..|+.+|.++... .
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 588999999988 899999999999999864211 11111 23566777778766 578999999999987652 1
Q ss_pred chH-HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh-HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669 426 NNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK-IIIGASGAIPALVDLLQNGSTRGRKDAATALFNL 503 (636)
Q Consensus 426 ~~k-~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL 503 (636)
.+- ........++.+...+.+.+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+.++
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 110 00111124566666666778899999999999886543211 1112225677777777777888999999888888
Q ss_pred hhccc---------------------hHHHHHHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHH
Q 006669 504 CIYMG---------------------NKGRAVRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIV 555 (636)
Q Consensus 504 ~~~~~---------------------n~~~lv~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~ 555 (636)
+.... +..+-.-..+++.+++.+.. .+..++..|..+|..++..... .+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~ 364 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH
Confidence 65320 00010113467888888852 3456778888888888764321 111
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 556 KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 556 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
. .+++.+...+.+.++..|+.|+.+|..++.... +...... ..+++.|+..+.+.++.+|..|.++|..+.+.
T Consensus 365 ~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 365 P-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp H-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 1 345666677777889999999999999997654 3333222 34788899999999999999999999988764
No 105
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.46 E-value=7.4e-08 Score=76.11 Aligned_cols=48 Identities=29% Similarity=0.455 Sum_probs=42.2
Q ss_pred CcccCccchhhccCC-eecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 256 ADFLCPISLELMRDP-VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 256 ~~f~CPis~~~m~dP-v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.+..||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 456799999999997 78999999999999999974 4799999988753
No 106
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=3.7e-08 Score=74.86 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=40.6
Q ss_pred CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.+++.||||++.+.||++++|||+|++.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467889999999999999999999999999873 5789999987754
No 107
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.42 E-value=6.4e-06 Score=93.45 Aligned_cols=250 Identities=14% Similarity=0.116 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGL 430 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~ 430 (636)
..+..+.+.|.++++.++..|++.|..+.. ++ +. ...++.+.++|.+.++.++..|+.++.++.. +++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 367788999999999999999999999873 22 22 2457889999999999999999999999987 44322
Q ss_pred HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc---------------CCHHHHHH
Q 006669 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN---------------GSTRGRKD 495 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~---------------~~~~~k~~ 495 (636)
.+.++.+..+|.+.++.++..|+.+|..++..+..... .-...++.++.+|.+ .++-.+..
T Consensus 178 ---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp ---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred ---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 25777888888888999999999999999865422111 112677888877763 26677777
Q ss_pred HHHHHHhhhhccchHHHHHHhchHHHHHHHhcC------CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC
Q 006669 496 AATALFNLCIYMGNKGRAVRAGIISALLKMLTD------SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT 569 (636)
Q Consensus 496 A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 569 (636)
.+.+|..++..++... ....+.|..++.. .+..++-.|+.++..+...+..+. .++..|..++.+
T Consensus 254 il~~L~~l~~~~~~~~----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~ 324 (618)
T 1w63_A 254 ILRLLRILGRNDDDSS----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLN 324 (618)
T ss_dssp HHHHHHHHTTTCHHHH----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCHHHH----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhC
Confidence 8888888876543211 1233333333321 223455555555555543322111 234455555555
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 570 ~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
.++.+|..|+..|..++...+.. ++ .....+...+.+.+..+|++|..+|..+.
T Consensus 325 ~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~ 378 (618)
T 1w63_A 325 NDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALV 378 (618)
T ss_dssp SSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 55555555555555555432221 11 12333444444444555555555544443
No 108
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.42 E-value=1.2e-05 Score=91.20 Aligned_cols=250 Identities=14% Similarity=0.074 Sum_probs=173.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch-HHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLI 431 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~-k~~I 431 (636)
.++.+.+.|++.++.++..|+.++..+.+.+++... +.++.+..+|...|+.++..|+.+|..++..... ...+
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~ 217 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF 217 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence 477888899999999999999999999987775432 5678888899889999999999999999864321 1112
Q ss_pred HHhCChHHHHHHHhc---------------CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc------cCCH
Q 006669 432 MLAGAIPSIVQILRA---------------GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ------NGST 490 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~------~~~~ 490 (636)
...++.++.+|+. .++-.+...+.+|..+...+... ....++.|..++. +.+.
T Consensus 218 --~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 218 --RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp --HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHH
T ss_pred --HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHH
Confidence 3678888888864 36778888889999887654321 1134445555543 1234
Q ss_pred HHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC
Q 006669 491 RGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG 570 (636)
Q Consensus 491 ~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~ 570 (636)
.+...|+.++.++...+ .+. ..++..|..++.+.++.++..|+..|..++.... .++. .....++..+.+.
T Consensus 292 aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d~ 362 (618)
T 1w63_A 292 AILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKDL 362 (618)
T ss_dssp HHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGSS
T ss_pred HHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccCC
Confidence 67778888888764321 122 2467788888887788888888888888876321 1222 3456777777777
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 571 LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 571 s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
+..+|..|+.+|..++... +...+ ++.|...+.+.+...|+.+...+..+..
T Consensus 363 d~~Ir~~alelL~~l~~~~--nv~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNGN--NIRGM-----MKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp CHHHHHHHHHHHHHHCCSS--STHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHcccc--cHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7888888888888888643 22222 3556666666677777777776666653
No 109
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.38 E-value=1.7e-07 Score=70.70 Aligned_cols=47 Identities=17% Similarity=0.520 Sum_probs=41.4
Q ss_pred CCcccCccchhhccC---CeecC-CCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669 255 PADFLCPISLELMRD---PVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQKL 302 (636)
Q Consensus 255 p~~f~CPis~~~m~d---Pv~~~-~G~t~~r~~I~~w~~~~~~~cP~~~~~l 302 (636)
.++..||||++.+.+ ++.++ |||.|++.||.+|+.. +.+||.|+.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 456789999999988 88887 9999999999999975 67899999865
No 110
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.35 E-value=2.5e-07 Score=77.76 Aligned_cols=50 Identities=14% Similarity=0.387 Sum_probs=43.8
Q ss_pred CCCcccCccchhhccC---CeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 254 IPADFLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 254 ~p~~f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
..++..||||++.+.+ ++.++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4567899999999988 888999999999999999974 5799999988754
No 111
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.35 E-value=2.4e-07 Score=81.22 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=42.9
Q ss_pred CCcccCccchhhccCCe------------------ecCCCchhhhHHHHHHHc----CCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRDPV------------------IVATGQTYERSYIQRWID----CGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv------------------~~~~G~t~~r~~I~~w~~----~~~~~cP~~~~~l~~ 304 (636)
+.+..||||++.|.+|+ +++|||.|++.||.+|+. ..+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 45679999999998886 789999999999999995 346789999987754
No 112
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.35 E-value=4.7e-06 Score=97.37 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=176.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch----
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN---- 427 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~---- 427 (636)
.++.+.+.+.+.++..+..|+..+..++.... +.-.... ...++.|+..+...++.++..++.+|.+++..-..
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 45566677788899999999999999986532 2111111 24688899999888999999999999988762110
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--hhHHHHh--cCchHHHHhhhccC--CHHHHHHHHHHHH
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--NKIIIGA--SGAIPALVDLLQNG--STRGRKDAATALF 501 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~LL~~~--~~~~k~~A~~aL~ 501 (636)
... -...++.++..+++. +.++..|+++|.+++..-. ....+.. ...++.|+.++.+. ++.++..++.+|.
T Consensus 449 ~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 449 QQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 111 123467777778765 8899999999998864211 0011111 24567778888743 3678999999999
Q ss_pred hhhhccchH-HHHHHhchHHHHHHHhcCC---------------CHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHH
Q 006669 502 NLCIYMGNK-GRAVRAGIISALLKMLTDS---------------RNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLI 564 (636)
Q Consensus 502 nL~~~~~n~-~~lv~~g~v~~Lv~lL~~~---------------~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv 564 (636)
.+....+.. ...+ ...++.+++.+.+. ...++..++.+|.+++..-... ... -...++.++
T Consensus 526 ~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~ 603 (861)
T 2bpt_A 526 TMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFF 603 (861)
T ss_dssp HHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHH
T ss_pred HHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHH
Confidence 987655432 2222 24667777776421 3345667888888887632211 001 124567778
Q ss_pred HHHcCCCH-HHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 565 VLLRTGLP-RNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 565 ~lL~~~s~-~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
..+...+. ..++.+..++..++...+....... ...++.|...+.+.++.++..|..++..+.+
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 88877666 7899998888888754333222211 2267788888877788889888888876654
No 113
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.33 E-value=4.3e-05 Score=73.97 Aligned_cols=220 Identities=17% Similarity=0.200 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK 428 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k 428 (636)
...+..|..+|...+..++..|+..|..+-+.- ..-+..+.+ ..++.++.++++.|..+.-.|+.+|..|-.+ +-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 346888999999999999999999999988763 223333333 5689999999999999999999999988763 3223
Q ss_pred HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~ 508 (636)
..+.. .+..++.++++++.-.+++|+..+..+......+ +.+..+..++.+.+.+.|..+++++.|++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 33322 2467888888999999999999999995444333 345678888888899999999999999987664
Q ss_pred hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHH
Q 006669 509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL--RTGLPRNKENAAAI 581 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL--~~~s~~~ke~A~~~ 581 (636)
+...+ .+++.-+-.+|.+.++.+++.|+.+|..+.+.|=-.+.+-+--.+-..++-| ..|.|..+..|-.+
T Consensus 183 D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 183 DSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp SCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred CHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 43322 2355557788888999999999999999998654322222222344444433 35778888777544
No 114
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.33 E-value=1.1e-05 Score=94.12 Aligned_cols=273 Identities=12% Similarity=0.100 Sum_probs=182.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHH--hcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhC-c
Q 006669 352 VAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIA--DAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIY-E 425 (636)
Q Consensus 352 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~--e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~-~ 425 (636)
..++.|++.+.++ ++..+..|+..+..+++.-......+. -...++.++..+.+. +..++..|+.+|.++... .
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999988 899999999999998864221100000 012456677777776 788999999999887431 1
Q ss_pred chH-HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch--hHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHh
Q 006669 426 NNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN--KIIIGASGAIPALVDLLQNGSTRGRKDAATALFN 502 (636)
Q Consensus 426 ~~k-~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~n 502 (636)
.+- ........++.+...+.+++++++..++.+|..+...... ...+ ....++.+...+.+.+..++..|+..+..
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 110 0000122456666777778899999999999988643221 1111 11456666677777889999999999988
Q ss_pred hhhccch------------------HHHHHHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHHhc
Q 006669 503 LCIYMGN------------------KGRAVRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIVKA 557 (636)
Q Consensus 503 L~~~~~n------------------~~~lv~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~~~ 557 (636)
++..... -...+ ..+++.++..|.+ .+..++..|..+|..++..-.. .+. .
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~ 368 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-E 368 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-H
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-H
Confidence 8754211 01111 4578888888864 2346778888899888864221 111 1
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
..++.+...+.+.++..|+.|+.+|..++.... +....... .+++.|+..+.+.++.+|..|.++|..+.++
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 245566666777789999999999999997643 33333322 4688888999999999999999988877654
No 115
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.33 E-value=4.6e-07 Score=71.74 Aligned_cols=50 Identities=18% Similarity=0.433 Sum_probs=42.3
Q ss_pred CCCcccCccchhhcc---CCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 254 IPADFLCPISLELMR---DPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 254 ~p~~f~CPis~~~m~---dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
...+..||||++.+. ++++++|||+|++.||.+|+.. +.+||.|+..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 356788999999884 5678999999999999999985 4679999988754
No 116
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.32 E-value=9.8e-08 Score=76.96 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=41.0
Q ss_pred CCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.+++.||||++.+.|||++||||+ ||+.|+.+| ..||.|++++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 456889999999999999999999 999999999 789999988754
No 117
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.31 E-value=1.9e-07 Score=98.17 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=45.1
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT 306 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 306 (636)
+..||||++.+.|||++||||+||+.||..|+..+..+||.|++++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 37999999999999999999999999999999866789999999886543
No 118
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=2.8e-07 Score=74.34 Aligned_cols=49 Identities=14% Similarity=0.446 Sum_probs=43.0
Q ss_pred CCcccCccchhhccCC---eecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRDP---VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~dP---v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.++..||||++.+.++ +.++|||.|++.||.+|+.. +.+||.|++.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4567899999999888 77999999999999999975 5789999988754
No 119
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.25 E-value=8.1e-06 Score=87.89 Aligned_cols=232 Identities=13% Similarity=0.128 Sum_probs=158.5
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch
Q 006669 352 VAIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN 427 (636)
Q Consensus 352 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~-~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~ 427 (636)
..++.++..+.+. +..+|..|++.+..+...-.++-. .....-.++.+...+.+.+..++..++.+|..+.. .+..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888887 789999999999886532111100 00001135666677777889999999999999886 2211
Q ss_pred -HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh------------------HHHHh---cCchHHHHhhh
Q 006669 428 -KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK------------------IIIGA---SGAIPALVDLL 485 (636)
Q Consensus 428 -k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~------------------~~i~~---~g~i~~Lv~LL 485 (636)
... +..+.++.++..+++.+.+++..|+.++..++...... ..+.+ ...+|.++..+
T Consensus 252 ~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 252 METY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp CTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 111 11155677777788888999999999888876432000 00111 23556666666
Q ss_pred ccC-------CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HHHHHh
Q 006669 486 QNG-------STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA--KIAIVK 556 (636)
Q Consensus 486 ~~~-------~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~ 556 (636)
.+. +...+..|+.+|..|+..-+. .++ ..+++.+.+.+.+.+...++.|+.+|..++..... -... -
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l 406 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V 406 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-H
Confidence 432 346788899999998765442 222 35778888889889999999999999999974321 1111 1
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669 557 ASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588 (636)
Q Consensus 557 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 588 (636)
..++|.++..|.+.++.+|..|+++|.+++..
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 46789999999998999999999999999864
No 120
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.20 E-value=2.5e-06 Score=104.45 Aligned_cols=272 Identities=11% Similarity=0.067 Sum_probs=184.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
..+..|++.+.+++.+.|..|...|.+..+.+...-..-.....++.|+..|.+.++.++..|+.+|.+++..-.. ..+
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 3588899999999999999999999876543211000000113467788889888999999999999999863221 111
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh------HHHHhcCchHHHHhhhc-cCCHHHHHHHHHHHHhhh
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK------IIIGASGAIPALVDLLQ-NGSTRGRKDAATALFNLC 504 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~ 504 (636)
...++.++..|.++++.+|..|+.+|..++..-... ..-.....+|.|+..+. +.++..+..|+.+|..++
T Consensus 85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 234567777777777888988888888875332111 01112357889999998 478899999999999987
Q ss_pred hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHH
Q 006669 505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL-PRNKENAAAILL 583 (636)
Q Consensus 505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~ 583 (636)
...+..-.-.-...++.|+..|.+.+..++..|+.+|..++...... + -...++.++..|.... +..+..++.++.
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 53221000011457788888888888999999999999999854322 1 2346888888886543 345667788887
Q ss_pred HhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 584 SLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 584 ~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
.++...+..... .-...++.+...+.+.++.+|+.|..++..+.+.
T Consensus 240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777644331110 0135688888888888889999999888877653
No 121
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.18 E-value=1.3e-05 Score=79.33 Aligned_cols=182 Identities=12% Similarity=0.093 Sum_probs=135.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHHHHh-cCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchHHHHHH
Q 006669 439 SIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGA-SGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNKGRAVR 515 (636)
Q Consensus 439 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~~~lv~ 515 (636)
.+.+.+.+.++..|..|+..|..+... ++... .. ...++.|..++. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 477778888999999999999988654 22100 01 145677888884 88999999999999999854322111122
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc-ChHH-H
Q 006669 516 AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR-DTEN-L 593 (636)
Q Consensus 516 ~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~-~~~~-~ 593 (636)
..+++.|++.+.+.+..+++.|..+|..++..... ...++.+...+.+.++.+|+.++..|..+... +++. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34899999999999999999999999999885431 13577888888888999999999999985443 3331 1
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669 594 ACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 594 ~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 629 (636)
.... ...++.|..++.+..+.+|..|..++..+.+
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1122 2478999999999999999999999988764
No 122
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.18 E-value=8.9e-06 Score=80.58 Aligned_cols=181 Identities=12% Similarity=0.128 Sum_probs=135.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhhC--cchHHHH
Q 006669 356 ALVRKLSSRSVEERRAAVAEIRSLSKRSTDNR-IIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSIY--ENNKGLI 431 (636)
Q Consensus 356 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r-~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~--~~~k~~I 431 (636)
.+.+.+.+.++..|..|+..|..+....+... ..+ ...++.|...+. ..+..++..|+.+|..|+.. +.....
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~- 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY- 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-
Confidence 37788889999999999999999887532210 000 124667888884 88999999999999999862 211111
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-h-
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-N- 509 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n- 509 (636)
-...++.++..+.+.+..++..|..+|..+...... ...++.+...+++.++.++..++..|..+....+ .
T Consensus 96 -~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 -ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp -HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 133688888889888999999999999998764321 1357788888998899999999999999644322 1
Q ss_pred -HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669 510 -KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 510 -~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 547 (636)
-...+ ..++|.|+.++.+.+..++..|..+|..++..
T Consensus 169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 12222 35899999999999999999999999988864
No 123
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.14 E-value=5e-07 Score=81.05 Aligned_cols=57 Identities=21% Similarity=0.444 Sum_probs=50.6
Q ss_pred CCCcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccch
Q 006669 254 IPADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY 311 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~ 311 (636)
.++++.||||++.+.+| +..+|||+|+..||.+|+.. +.+||+|+..+...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 35779999999999998 99999999999999999985 57999999999888877764
No 124
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=7.9e-07 Score=71.75 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=39.8
Q ss_pred CCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.+++.||||++.+.|||++||||+ ||+.|++++ ..||.|++++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 456789999999999999999999 999999753 789999998755
No 125
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=8e-07 Score=75.06 Aligned_cols=67 Identities=10% Similarity=0.300 Sum_probs=50.1
Q ss_pred CCcccCccchhhccCCeec---CCCchhhhHHHHHHHcC----C---CCCCCC--CCcc--cccCCcccchhHHHHHHHH
Q 006669 255 PADFLCPISLELMRDPVIV---ATGQTYERSYIQRWIDC----G---NVTCPK--TQQK--LEHLTLTPNYVLRSLISQW 320 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~---~~G~t~~r~~I~~w~~~----~---~~~cP~--~~~~--l~~~~l~pn~~lr~lI~~w 320 (636)
.+.|.||||++.+.+|+++ +|||.||+.|+++|+.. | ...||. |+.. ++...+ .+....+++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHH
Confidence 4578999999999999886 79999999999999863 3 246998 9887 544333 233345667777
Q ss_pred Hh
Q 006669 321 CT 322 (636)
Q Consensus 321 ~~ 322 (636)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 126
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.08 E-value=0.00049 Score=77.96 Aligned_cols=253 Identities=14% Similarity=0.094 Sum_probs=169.7
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669 353 AIEALVRKL--SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL 430 (636)
Q Consensus 353 ~i~~Lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~ 430 (636)
.++.+.+.| .+.++.++..|+.++..+.+.+++.- ...+.++.|..+|...|+.++.+|+.+|..++..... .
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~ 221 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E 221 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H
Confidence 456677888 78899999999999999988766432 1247899999999988999999999999998863221 1
Q ss_pred HHHhCChHHHHHHHh----cC-------------cHHHHHHHHHHHHHccCCCc--hhHHHHhcCchHHHHhhhcc----
Q 006669 431 IMLAGAIPSIVQILR----AG-------------SMEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQN---- 487 (636)
Q Consensus 431 I~~~G~I~~Lv~lL~----~~-------------~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~LL~~---- 487 (636)
+ ...++.+++.|+ .+ ++-.+.....+|..+...++ .+..+. ..+..++..+.+
T Consensus 222 ~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 222 F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKS 297 (621)
T ss_dssp H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSC
T ss_pred H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCccc
Confidence 1 134455555443 22 46788888888888775432 222222 233333332211
Q ss_pred -----CC--HHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcH
Q 006669 488 -----GS--TRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTI 560 (636)
Q Consensus 488 -----~~--~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i 560 (636)
.+ ..+...++.++..+...+ .+.. .++..|..+|.+.++.++..|+..|..++........+ . ...
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~-~~~ 370 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K-THI 370 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H-TTH
T ss_pred ccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H-HHH
Confidence 12 256677778887775211 2222 46778889998888999999999999998754322222 2 456
Q ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 561 PVLIVLLR-TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 561 ~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
..++..|. +.++.+|..|+.+|..++. +.+...+ +..|...+...+...++.+...+..+.
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI-----VAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 77888888 7888999999999999984 3454444 345566666667777766666555553
No 127
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.04 E-value=0.00011 Score=71.27 Aligned_cols=220 Identities=13% Similarity=0.052 Sum_probs=158.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhhC--cchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHH
Q 006669 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIY--ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKII 471 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~--~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~ 471 (636)
.+..|..+|+..|+.++.+|+.+|.++-+. ...+..+. ...++.+++++++.+..+...|+.+|..|-..-. ....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 456799999999999999999999999874 22333333 4578999999999999999999999999865432 1111
Q ss_pred HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Q 006669 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK 551 (636)
Q Consensus 472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~ 551 (636)
.. -.+.+|.+++.++++-....|+..+..|...... .+++..+.+++.+.+..++..++.+|.++++..+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 11 2457888999999999999999999998433222 246677888898899999999999999999854322
Q ss_pred HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh--HHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHh
Q 006669 552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT--ENLACISRLGAVIPLTELT-KSGTERAKRKATSLLEHL 627 (636)
Q Consensus 552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~--~~~~~i~~~G~i~~L~~Ll-~~g~~~~k~kA~~lL~~l 627 (636)
..+ .+.+.-+-++|++.++..++.|..+|..+....- +....+. ++....-.+. ..|.|..+.||...-..+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 111 1344556677898999999999999998876421 1111111 1222223444 569999999998776655
No 128
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.95 E-value=3.8e-05 Score=93.85 Aligned_cols=229 Identities=12% Similarity=0.121 Sum_probs=158.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH--
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK-- 428 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k-- 428 (636)
..++.|++.|.+.++++|..|+..|..++...+. ... ..++.|+..|.+++..++..|..+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~-----~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 4688899999999999999999999999865433 121 24677888888888889999999998887621111
Q ss_pred ----HHHHHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669 429 ----GLIMLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNL 503 (636)
Q Consensus 429 ----~~I~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL 503 (636)
..-.....++.|+..+. ++++..+..|+.+|..++........-.....++.|+..+.+.++.+++.|+.+|..+
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11112456888888888 4789999999999999863211000000124667788888888899999999999999
Q ss_pred hhccchHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHH
Q 006669 504 CIYMGNKGRAVRAGIISALLKMLTDS-RNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRTGLPRNKENAAA 580 (636)
Q Consensus 504 ~~~~~n~~~lv~~g~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~ke~A~~ 580 (636)
+...+.. +. ...++.+++.|.+. +...+..++.++..++..... .+.. ...++.++..+...++.+|+.|+.
T Consensus 203 ~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 203 VMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8654432 22 34678888887543 234555677777777653211 1211 357889999998888889999999
Q ss_pred HHHHhhccCh
Q 006669 581 ILLSLCKRDT 590 (636)
Q Consensus 581 ~L~~L~~~~~ 590 (636)
++..++...+
T Consensus 278 ~l~~l~~~~~ 287 (1230)
T 1u6g_C 278 AFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHHCh
Confidence 8888876543
No 129
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.93 E-value=3.5e-06 Score=65.68 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCcccCccchhhccCCeec--CCCch-hhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 255 PADFLCPISLELMRDPVIV--ATGQT-YERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~--~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
+++..|+||++-..|++++ ||||. +|..|+.+|+.. +..||.|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4567899999999999988 99999 899999999974 578999999874
No 130
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=5.4e-06 Score=67.86 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=38.6
Q ss_pred CcccCccchhhccC--------------Ceec-CCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 256 ADFLCPISLELMRD--------------PVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 256 ~~f~CPis~~~m~d--------------Pv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
++-.|+||++.|.+ ++.+ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45568888888876 4454 59999999999999985 4699999988754
No 131
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.90 E-value=0.0014 Score=74.24 Aligned_cols=253 Identities=13% Similarity=0.113 Sum_probs=175.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL--TTDDVMTQEHAVTAILNLSI-YENNKG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL--~s~d~~~~e~Av~aL~nLs~-~~~~k~ 429 (636)
.+..+.+.|.++++.++-.|++.|.++.. ++ +.+ ..++.+.++| .+.++.++..|+.++..+.. +++..
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~- 183 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV- 183 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-
Confidence 56778889999999999999999999853 33 222 3457888899 78899999999999999887 33221
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc----cC-------------CHHH
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ----NG-------------STRG 492 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~----~~-------------~~~~ 492 (636)
-..+.++.+.++|.+.++.++.+|+.+|..++..+.. . -...++.++..|. .+ ++=.
T Consensus 184 --~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 184 --PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp --CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred --CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 1247899999999888999999999999998754421 1 1134455554443 21 4567
Q ss_pred HHHHHHHHHhhhhcc--chHHHHHHhchHHHHHHHhcC-C----------CHHHHHHHHHHHHHHhcChhhHHHHHhcCc
Q 006669 493 RKDAATALFNLCIYM--GNKGRAVRAGIISALLKMLTD-S----------RNCMVDEALTILSVLASNPEAKIAIVKAST 559 (636)
Q Consensus 493 k~~A~~aL~nL~~~~--~n~~~lv~~g~v~~Lv~lL~~-~----------~~~~~~~Al~~L~~La~~~~~~~~i~~~g~ 559 (636)
+...+..|..++..+ +.+..+.+ .+..++..+.+ + ...+.-+|+.++..+...++... .+
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~ 330 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA 330 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence 777778887776532 22333332 44444443322 1 22677788888888875443332 34
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 006669 560 IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK-SGTERAKRKATSLLEHLRK 629 (636)
Q Consensus 560 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~~ 629 (636)
+..|..+|.+.++.+|-.|+..|..++...+. ..+++ .....++..+. +.+..+|.+|..+|-.+..
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVK-THIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 66788888878899999999999999987642 11222 24566667677 8888999999998887754
No 132
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.90 E-value=4.2e-06 Score=65.01 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=41.6
Q ss_pred cccCccchhhccCCeec--CCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 257 DFLCPISLELMRDPVIV--ATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~--~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
+..|+||++-.+|++++ ||||. +|+.|+.+|+.. +..||.|++++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 45699999999999998 99998 999999999975 4789999998753
No 133
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.88 E-value=2.6e-06 Score=76.22 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=91.9
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669 393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII 472 (636)
Q Consensus 393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 472 (636)
...++.|+.+|.++++.++..|+.+|.++.. ..++.|+..|++.++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 3567889999999999999988888876532 136889999999999999999999998752
Q ss_pred HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006669 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSV 543 (636)
Q Consensus 473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~ 543 (636)
..+++.|+.+|.+.++.++..|+.+|.++. ...+++.|++++.+.+..++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999875 23578999999988888999999888764
No 134
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00021 Score=71.32 Aligned_cols=190 Identities=9% Similarity=0.116 Sum_probs=135.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHH-ccCC-CchhHHHHh-cCchHHHHhhh-ccCCHHHHHHHHHHHHhhhhccc--hHHHH
Q 006669 440 IVQILRAGSMEARENAAATLFS-LSLL-DENKIIIGA-SGAIPALVDLL-QNGSTRGRKDAATALFNLCIYMG--NKGRA 513 (636)
Q Consensus 440 Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~-~~~~~~i~~-~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL~~~~~--n~~~l 513 (636)
+.+.+.+.++.-|..|+..|.. +... .+....... ...+..|...+ ++.+..++..|+.+|..|+..-. .-..-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4456678899999999999999 7632 211100111 14567778888 67889999999999999985332 11101
Q ss_pred HHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH--hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-
Q 006669 514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV--KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT- 590 (636)
Q Consensus 514 v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~--~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~- 590 (636)
...-++|.+++.+.+....+++.+..+|..++.+-+- .... -...++.|+..|.+.++.+|+.++.+|..++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 1123799999999998899999999999888873210 0000 01256788888888899999999999998886554
Q ss_pred --HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669 591 --ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 591 --~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 630 (636)
......+....++.|..++.+.++.+|..|..+|..+.+.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2222323256899999999999999999999999987653
No 135
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.80 E-value=3.6e-06 Score=87.87 Aligned_cols=46 Identities=11% Similarity=0.274 Sum_probs=41.5
Q ss_pred CCCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 254 IPADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 254 ~p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
+.+++.||||++.+.|||++||||+ ||+.|+.+| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3567899999999999999999999 999999988 679999988754
No 136
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.80 E-value=3.3e-06 Score=68.77 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=40.0
Q ss_pred CCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.++..||||++.+.|||++||||. ||+.|+.+|. .||.|++++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 455689999999999999999999 9999999874 89999998765
No 137
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.77 E-value=4.1e-06 Score=74.87 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
.++.++..|++.++.++..|+..|..+.. ..++.|+.+|.++++.++..|+.+|.++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 47778889998888888888777665432 136899999999999999999999988753
Q ss_pred HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669 433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNL 503 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL 503 (636)
..+++.|+..|++.++.++..|+++|..+. ...+++.|+.++++.++.++..|+.+|.++
T Consensus 72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 235889999999999999999999999875 234688999999988999999999998754
No 138
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.77 E-value=0.0016 Score=66.78 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=133.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHH-ccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH-hch
Q 006669 441 VQILRAGSMEARENAAATLFS-LSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGI 518 (636)
Q Consensus 441 v~lL~~~~~e~~~~Aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~ 518 (636)
++.|.+++.+.+..+..-|.. ++.+.+....++..+++..|+.+..+++......+++|+.+|..+..+-.-++. ...
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f 203 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT 203 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence 455666776777777777776 566778888999999999999999999999999999999999888777666664 678
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHhc--------C--cHHHHHHHHc---CCCHHHHHHHHHHHHH
Q 006669 519 ISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVKA--------S--TIPVLIVLLR---TGLPRNKENAAAILLS 584 (636)
Q Consensus 519 v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~--------g--~i~~Lv~lL~---~~s~~~ke~A~~~L~~ 584 (636)
|..++.++.+.+..++..|+++|..++.+.+ +...+.++ | ....|+.+|. +++...+.+|...+-.
T Consensus 204 I~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~ 283 (339)
T 3dad_A 204 IQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK 283 (339)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 9999999988889999999999999988554 33322221 1 3789999997 5678999999988876
Q ss_pred hhccCh--H----HHHHHHHcCChHHHHHhhhc-CC-HHHHH
Q 006669 585 LCKRDT--E----NLACISRLGAVIPLTELTKS-GT-ERAKR 618 (636)
Q Consensus 585 L~~~~~--~----~~~~i~~~G~i~~L~~Ll~~-g~-~~~k~ 618 (636)
+..+.+ + ....+.+.|.-..+...+.. |+ +..++
T Consensus 284 lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 284 TLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 655433 3 22234456666677776665 33 34443
No 139
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.76 E-value=0.0012 Score=71.02 Aligned_cols=230 Identities=14% Similarity=0.157 Sum_probs=159.9
Q ss_pred HHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHHHhC--ChHHHHHHHhc---------------C--cHHHHHHHHH
Q 006669 398 VLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIMLAG--AIPSIVQILRA---------------G--SMEARENAAA 457 (636)
Q Consensus 398 ~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G--~I~~Lv~lL~~---------------~--~~e~~~~Aa~ 457 (636)
.++..|+. .+...+.-++.+|-.|...+..|..+.+.+ .+++++.+++. + ....+.+++-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 45566665 345567788999999998889998887643 46777665542 1 3567899999
Q ss_pred HHHHccCCCchhHHHHhcCch--HHHHhhhccC-CHHHHHHHHHHHHhhhhccc-hH----H-HHHHhchHHHHHHHhcC
Q 006669 458 TLFSLSLLDENKIIIGASGAI--PALVDLLQNG-STRGRKDAATALFNLCIYMG-NK----G-RAVRAGIISALLKMLTD 528 (636)
Q Consensus 458 ~L~~Ls~~~~~~~~i~~~g~i--~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~-n~----~-~lv~~g~v~~Lv~lL~~ 528 (636)
+++-||+.++....+...+.. +.|+++++.. ..++.+-++.+|.||..... +. . .++..++ +.+++.|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998877777666543 6777778765 47888899999999976541 21 2 2233445 445566643
Q ss_pred ---CCHHHHHHHHHHHHHH-------hcC---------------hhhHH-H--------HHhc--CcHHHHHHHHcC---
Q 006669 529 ---SRNCMVDEALTILSVL-------ASN---------------PEAKI-A--------IVKA--STIPVLIVLLRT--- 569 (636)
Q Consensus 529 ---~~~~~~~~Al~~L~~L-------a~~---------------~~~~~-~--------i~~~--g~i~~Lv~lL~~--- 569 (636)
.++++.+.--.+...| ++. |..+. . +.+. ..+..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 5666665443333222 211 11111 1 2122 257889999974
Q ss_pred -------CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 570 -------GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 570 -------~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
.++.+..-|+.=|..++++.|..+..+-+.|+-..++.|+.+.++.+|..|..++..+-
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 24666777888889999999999988889999999999999999999999998887664
No 140
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00011 Score=73.50 Aligned_cols=188 Identities=5% Similarity=0.104 Sum_probs=131.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHh-cCCHHHHHHhh-cCCChHHHHHHHHHHHHhhhCc---chH-H
Q 006669 357 LVRKLSSRSVEERRAAVAEIRS-LSKRSTDNRIIIAD-AGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYE---NNK-G 429 (636)
Q Consensus 357 Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~e-~g~i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~~~---~~k-~ 429 (636)
+.+.+.+.++..|..|+..|.. +..+.+.......+ ...+..|...+ ...+..++..|+.+|..|+..- ... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4567789999999999999999 87543221100001 12356777788 5778889999999999998621 211 2
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~ 508 (636)
.. .-.++.+++.+++....++..+..+|..+...- .....-.-...++.|+..|++.++.+|..++.+|..+....+
T Consensus 101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 11 225788888888888888888888877775421 111000011366788888888899999999999999876543
Q ss_pred hH-HH---HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 509 NK-GR---AVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 509 n~-~~---lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
.. .. .+...++|.|.+++.+.+..+++.|..+|..++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 21 22 2224699999999999999999999999988876
No 141
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.66 E-value=2.7e-05 Score=67.05 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=39.8
Q ss_pred CcccCccchhhccCC------------------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 256 ADFLCPISLELMRDP------------------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 256 ~~f~CPis~~~m~dP------------------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
++-.|+||++.|.+| +..+|||.|.+.||.+|+.. +.+||.|++.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 345799999999877 44899999999999999985 689999998753
No 142
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.62 E-value=0.001 Score=68.24 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=121.0
Q ss_pred HHHhhhccCCHHHHHHHHHHHHh-hhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh-c
Q 006669 480 ALVDLLQNGSTRGRKDAATALFN-LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK-A 557 (636)
Q Consensus 480 ~Lv~LL~~~~~~~k~~A~~aL~n-L~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~-~ 557 (636)
.+++-|.+++.+.++.++.-|.. +.....-...++..+++..|+.+....+..+..+++.+|.+|..+.+|...+++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34455667788889988888888 555567789999999999999999889999999999999999999999988875 4
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH--------cC--ChHHHHHhhh---cCCHHHHHHHHHHH
Q 006669 558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR--------LG--AVIPLTELTK---SGTERAKRKATSLL 624 (636)
Q Consensus 558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~--------~G--~i~~L~~Ll~---~g~~~~k~kA~~lL 624 (636)
.+|..+..++.+....+...|.++|..+|..++.+...+.+ .| -.+.|+.+++ +++...+.+|..++
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 68999999998877888999999999999887644443322 12 3778999997 67889999988887
Q ss_pred HHh
Q 006669 625 EHL 627 (636)
Q Consensus 625 ~~l 627 (636)
.-+
T Consensus 282 N~l 284 (339)
T 3dad_A 282 NKT 284 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 143
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=6.2e-05 Score=59.27 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=39.8
Q ss_pred CCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
.++..|+||++-..|||++||||. ||..|++. ...||.|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 457889999999999999999999 99999984 4789999988754
No 144
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.53 E-value=0.0089 Score=70.27 Aligned_cols=262 Identities=16% Similarity=0.184 Sum_probs=183.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh---hHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh--Cc
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD---NRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI--YE 425 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~---~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~--~~ 425 (636)
.+.+..|.+.++..... +.|+..+..++..... .-..++ +.+|.++..+......++..|-.++..+.. ++
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~ 128 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH
Confidence 35677777777664333 7888888888854321 112222 567888888877778888888878777765 33
Q ss_pred chHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHh
Q 006669 426 NNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQNGSTRGRKDAATALFN 502 (636)
Q Consensus 426 ~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~n 502 (636)
... ...+|.|+..|.++ -+..+..|+.++..|+... ..+++.. ..||.+-+.+-+..+++++.|..++..
T Consensus 129 ~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~ 201 (986)
T 2iw3_A 129 VAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTK 201 (986)
T ss_dssp GGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHH
Confidence 222 23578999988776 5999999999999998654 4555544 788999999988899999999999999
Q ss_pred hhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 006669 503 LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582 (636)
Q Consensus 503 L~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L 582 (636)
+|..-+|+.. ...||.|++.+.+++. +.+++..|..-..-.+.-.... +-.+|.|.+=|...+...+..++-++
T Consensus 202 ~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 202 ATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVII 275 (986)
T ss_dssp HGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEE
Confidence 9877666543 3578999999987643 4455555543332222111110 01367777777777888899999999
Q ss_pred HHhhc--cChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcc
Q 006669 583 LSLCK--RDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLRKL 630 (636)
Q Consensus 583 ~~L~~--~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~ 630 (636)
-|||. ++|.....++ ...+|-|...... .+|.+|+.|..++..|.+.
T Consensus 276 ~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99997 3454444443 4577888776655 6899999999999988653
No 145
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.40 E-value=0.0085 Score=64.39 Aligned_cols=229 Identities=14% Similarity=0.153 Sum_probs=150.0
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcC--CHHHHHHhhcC---------------C--ChHHHHHHHH
Q 006669 357 LVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAG--AIPVLVNLLTT---------------D--DVMTQEHAVT 416 (636)
Q Consensus 357 Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g--~i~~Lv~lL~s---------------~--d~~~~e~Av~ 416 (636)
++..|.+. +.+.+.-++..|..|.+ .++.|..+.+.+ .++.++.+++. + ...++.+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 44455542 34556678888888886 578888887653 36777654431 1 2456899999
Q ss_pred HHHHhhhCcchHHHHHHhCCh--HHHHHHHhcC-cHHHHHHHHHHHHHccCCC--chh---H-HHHhcCchHHHHhhhcc
Q 006669 417 AILNLSIYENNKGLIMLAGAI--PSIVQILRAG-SMEARENAAATLFSLSLLD--ENK---I-IIGASGAIPALVDLLQN 487 (636)
Q Consensus 417 aL~nLs~~~~~k~~I~~~G~I--~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~--~~~---~-~i~~~g~i~~Lv~LL~~ 487 (636)
+++-|+.+++....+...+.. +.|+.+++.. -..+..-+.++|.|+.... +.. . .+...++ .++++.|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999988777777666533 5677778765 4788889999999997764 112 2 2222344 456666654
Q ss_pred C---CHHHHHHHHH-------HHHhhhhccc------------------------hHHHHHH--hchHHHHHHHhcC---
Q 006669 488 G---STRGRKDAAT-------ALFNLCIYMG------------------------NKGRAVR--AGIISALLKMLTD--- 528 (636)
Q Consensus 488 ~---~~~~k~~A~~-------aL~nL~~~~~------------------------n~~~lv~--~g~v~~Lv~lL~~--- 528 (636)
. +++...+.-. .+..|+..++ |-.++-+ ..++..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 3 4444333221 1122222211 1122222 1278889999963
Q ss_pred -------CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 529 -------SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 529 -------~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
.++.+..-|+.=+..++. +|.+|..+-+.|+=..+.++|.+.++.+|-+|..++-.+..
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 245566667777777777 78899888888988888999999999999999988876543
No 146
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.085 Score=49.26 Aligned_cols=211 Identities=15% Similarity=0.189 Sum_probs=145.1
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHH
Q 006669 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKII 471 (636)
Q Consensus 394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 471 (636)
..+..++.+|..+-..+|.||+.++.+++. .++....+. ..|+-+++ +......+.-+.+++-++.... .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence 356788999986668899999999999987 555444332 33444444 4566666667777777764322 1
Q ss_pred HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Q 006669 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK 551 (636)
Q Consensus 472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~ 551 (636)
+++ +.+|.+..=.+-|+++.+.+...+|..+...++.-. .+++.-+..|+.+++..-+-.|+..+..+.. +.
T Consensus 104 ~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltskd~~Dkl~aLnFi~alGe---n~ 175 (253)
T 2db0_A 104 LVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSKNREDKLTALNFIEAMGE---NS 175 (253)
T ss_dssp HHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---TT
T ss_pred HHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc---cC
Confidence 111 355666666677899999999999999876554322 3456678889988776555555555554443 33
Q ss_pred HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
..-+ .-.+|.|..+|...+.-++..|+.+|.+++..++..+..+.. -++-+.+.++-++.+....|..+
T Consensus 176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHH
Confidence 2222 257899999999999999999999999999998886554432 23334567777887777776654
No 147
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00011 Score=59.71 Aligned_cols=51 Identities=16% Similarity=0.304 Sum_probs=42.3
Q ss_pred CCCcccCccchhhc--cCCeecCCC-----chhhhHHHHHHHcCC-CCCCCCCCccccc
Q 006669 254 IPADFLCPISLELM--RDPVIVATG-----QTYERSYIQRWIDCG-NVTCPKTQQKLEH 304 (636)
Q Consensus 254 ~p~~f~CPis~~~m--~dPv~~~~G-----~t~~r~~I~~w~~~~-~~~cP~~~~~l~~ 304 (636)
..++..|+||++-+ .+|++.||+ |.|-+.||++|+... ..+||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999776 579999996 999999999999754 4689999998754
No 148
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.28 E-value=0.019 Score=66.86 Aligned_cols=234 Identities=17% Similarity=0.112 Sum_probs=153.5
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC
Q 006669 353 AIEALVRKLSSRS--------VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY 424 (636)
Q Consensus 353 ~i~~Lv~~L~s~~--------~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~ 424 (636)
.+..|...|.+.+ ..++..|+-.|....-++. +. .+++.|..+|..++....+.|+.+|..+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4555555565433 3455555555555432221 11 1356788888777766666666666655332
Q ss_pred cchHHHHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc-CCHHHHHHHHHHHHh
Q 006669 425 ENNKGLIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN-GSTRGRKDAATALFN 502 (636)
Q Consensus 425 ~~~k~~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~-~~~~~k~~A~~aL~n 502 (636)
..|.. ++..|+..+.+ .+..++..++-.|..+... +...++.+++.|.. .++-++..++.++..
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG--------RQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22222 24556665543 4667888888888776543 33577888888874 577788877777776
Q ss_pred hhhccchHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHH
Q 006669 503 LCIYMGNKGRAVRAGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL-RTGLPRNKENAAA 580 (636)
Q Consensus 503 L~~~~~n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~ke~A~~ 580 (636)
-+...+|. .+|+.|++.+ .+.+..++..|+..|+.++...+ ..++.++.+| ++.++.+|..|+.
T Consensus 569 AyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555553 2556566665 45678899999999998876432 4577787755 5678999999999
Q ss_pred HHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 581 ILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 581 ~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
+|..+|.+++. ..+++.|..+..+.++.+++.|...|..+-
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 99999986652 124567777888889999999998888774
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.15 E-value=0.0039 Score=65.16 Aligned_cols=217 Identities=10% Similarity=0.081 Sum_probs=132.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
-++..|.+.+.++++..+-.|++.|..+...+ --. ...+.+.+.|.+.++.++..|+-+...|.... .+.+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH
Confidence 35788999999999999999999999987532 222 23466778888999999999999988887532 2222
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC---CHHHHHHHHHHHHhhhhccc
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG---STRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~---~~~~k~~A~~aL~nL~~~~~ 508 (636)
.+.++.+-+++.+.++-++.+|..+|..+...+.. ++..|+.-+..+ ++-++..-+..+..++..++
T Consensus 175 --~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 175 --KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp --HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred --HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 36899999999999999999999999999765421 344455555443 34444444555545544321
Q ss_pred hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669 509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588 (636)
Q Consensus 509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 588 (636)
. -.....++.+...|++.++.++-+|+.++..+...+.. .. ..++..|..++.+.++..|=.|+..|..+...
T Consensus 245 ~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 245 G---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ---------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred h---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 0 11234566677778888999999999999888663322 11 23456666778788888888888888888876
Q ss_pred ChHHHH
Q 006669 589 DTENLA 594 (636)
Q Consensus 589 ~~~~~~ 594 (636)
.|....
T Consensus 318 ~P~~v~ 323 (355)
T 3tjz_B 318 HPSAVT 323 (355)
T ss_dssp ------
T ss_pred CcHHHH
Confidence 665443
No 150
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.13 E-value=6.8e-05 Score=65.57 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=0.0
Q ss_pred ccCccchhhccCCee------------------cCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 258 FLCPISLELMRDPVI------------------VATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 258 f~CPis~~~m~dPv~------------------~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
-.|+||++.|.+|.+ .+|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 479999999987532 589999999999999985 678999998653
No 151
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.05 E-value=0.0073 Score=70.99 Aligned_cols=261 Identities=16% Similarity=0.144 Sum_probs=170.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch---HH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN---KG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~---k~ 429 (636)
.+..+++.++..+...+..|+..+..+...+...+ ....+.+..|.+.+...... +.|+.++..|+..... .+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 45557777776666667778888887765332111 11135667777777643333 9999999999853211 12
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhcc
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYM 507 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~ 507 (636)
... -+.++.++....+....++..|..++..+... +.+.. ...+|.|+..|.++ .+..|..|+.++..|+...
T Consensus 91 ~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 91 PYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred cch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 111 25677777777666677777766666655321 22221 34678999988765 6899999999999998655
Q ss_pred chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
+..-...=..+||.+.+.+-+..+++...|..++..+|..-+|+.. ...||.|++.+...+. ...++..|..-+.
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tf 240 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTF 240 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCee
Confidence 3222222256999999999999999999999999999986555432 3679999999977643 3344555543332
Q ss_pred cCh--HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 588 RDT--ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 588 ~~~--~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
-.. .-.-.+ .+|.|..=+...+...+||++-+..+|++..
T Consensus 241 v~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 241 VAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp CSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred EeeecchhHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 111 111111 2556666667778889999999999999864
No 152
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.21 Score=46.64 Aligned_cols=213 Identities=14% Similarity=0.179 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhh-Ccch
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSI-YENN 427 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~-~~~~ 427 (636)
+...+..++..|...-+.+|..|+..+..+++.-++...-+ +..|+-+++ ++..........++..++. .|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 55678899999999999999999999999998877665443 355666664 4555554556677777775 3332
Q ss_pred HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~ 507 (636)
-. +.+|.+..=.+-|++.++.+...+|..+...+. ..+ .+.+..+..++.+.+..-+..|+..+..| .
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~--~~v~rdi~smltskd~~Dkl~aLnFi~al---G 172 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLM--ASIVRDFMSMLSSKNREDKLTALNFIEAM---G 172 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTC---C
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHH---h
Confidence 11 234555555567899999999999998865432 111 14566777888877765565555555444 5
Q ss_pred chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
+|.-+-+. -.+|.|..+|.+.+.-++..|+.+|.+++. ++.-|..+. .-++-+...|.-++......|..+.
T Consensus 173 en~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 173 ENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp TTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 56555553 478999999999999999999999999998 455444432 3344455666666666666665443
No 153
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.91 E-value=0.024 Score=59.13 Aligned_cols=243 Identities=13% Similarity=0.035 Sum_probs=149.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML 433 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~ 433 (636)
....++.+.+.+...++-.--.+..+++..++. | =++..|.+=+.++++-++-.|+.+|.++...+- -.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~~---- 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-LQ---- 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-HH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-HH----
Confidence 445677888999888887777777888763331 1 246778888889999999999999998865332 11
Q ss_pred hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHH
Q 006669 434 AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA 513 (636)
Q Consensus 434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~l 513 (636)
...+.+...|.+.++-++..|+-+...|...... . . .+++..+-+++.+.++-+..+|+.+|+.+...+.
T Consensus 139 -~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----- 208 (355)
T 3tjz_B 139 -AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--V-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR----- 208 (355)
T ss_dssp -HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--H-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-----
T ss_pred -HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--H-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-----
Confidence 1345566777888999999999999988655432 2 2 2689999999999999999999999999976441
Q ss_pred HHhchHHHHHHHhcCC---CHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669 514 VRAGIISALLKMLTDS---RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 514 v~~g~v~~Lv~lL~~~---~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
.++..|+..+... ++-..-.-+.++..++...+. -.....++.|...|++.++.+.=.|+.++..+...+.
T Consensus 209 ---~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~ 282 (355)
T 3tjz_B 209 ---LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA 282 (355)
T ss_dssp ---HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC------
T ss_pred ---HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH
Confidence 1445555555432 222222222333222222100 0123456667777788888898889999987754222
Q ss_pred HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 591 ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 591 ~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
. . ...++..|..++.+.++.+|=-|...|..+.
T Consensus 283 ~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 283 K----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp ----------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred H----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1 1 1345677888888888888877766555543
No 154
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.096 Score=52.43 Aligned_cols=185 Identities=14% Similarity=0.179 Sum_probs=122.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhH--HH-HHhcC-CHHHHHHhhcCCChHHHHHHHHHHHHhhhCc----chH
Q 006669 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNR--II-IADAG-AIPVLVNLLTTDDVMTQEHAVTAILNLSIYE----NNK 428 (636)
Q Consensus 357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r--~~-i~e~g-~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~----~~k 428 (636)
|-+.|.+.++..|.+|+..|..+....+... .. +...+ ..+.+-..+...+..++..++.+|..+...- ..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 6689999999999999999988765432111 11 11122 3455667787788899999999988776521 112
Q ss_pred HH--HHHhCChHHHHHH-HhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669 429 GL--IMLAGAIPSIVQI-LRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI 505 (636)
Q Consensus 429 ~~--I~~~G~I~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~ 505 (636)
.. ..-...++.|++- |.++...++..|..++..+........ ..++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 21 1224467777764 666778888888888877653322111 134566677788899999999999988754
Q ss_pred ccch----HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669 506 YMGN----KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 506 ~~~n----~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 547 (636)
..+. -...+ ..+++.+..++.+.+..+++.|..++..+-..
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3211 11112 23566778888899999999999999887664
No 155
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.31 E-value=0.33 Score=56.66 Aligned_cols=237 Identities=16% Similarity=0.060 Sum_probs=148.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-cCCChHHHHHHHHHHHHhhhCcchHH
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKG 429 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~~~~~k~ 429 (636)
...++.|...|...+...+..|+..|..+-.+.. |.. ++..|+..+ ...+..++..++..|..+...
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g----- 538 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG----- 538 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence 3456777777776666555566666665532221 111 234555544 345667777777777766542
Q ss_pred HHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhcc
Q 006669 430 LIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~ 507 (636)
+...++.+++.|.. .++.+|..++.++.--.....+ ..+|+.|++.+. +.+..++..|+.+|..+....
T Consensus 539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 23457788888875 4677777776666533222222 135566777665 446788999999998876554
Q ss_pred chHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669 508 GNKGRAVRAGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586 (636)
Q Consensus 508 ~n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 586 (636)
+ ..++.++++| .+.++.++..|..+|..++...... .++..|..+.+...+.++.+|+.+|..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3 3566777755 4588999999999999998643322 23556777788888999999999999887
Q ss_pred ccChHH----HHHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHh
Q 006669 587 KRDTEN----LACISRLGAVIPLTELTKS--GTERAKRKATSLLEHL 627 (636)
Q Consensus 587 ~~~~~~----~~~i~~~G~i~~L~~Ll~~--g~~~~k~kA~~lL~~l 627 (636)
....+. ...+ ...|.....+ .++.++-.|.-++-.+
T Consensus 676 ~gtnna~~~rva~~-----l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 676 IQQTEKLNPQVADI-----NKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TTCCTTTCTTHHHH-----HHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred cCCccccchHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 654332 2222 3335555544 3556666665555544
No 156
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.21 E-value=0.39 Score=47.13 Aligned_cols=227 Identities=17% Similarity=0.172 Sum_probs=150.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhh-------cCCC-----hHHHHHHHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLL-------TTDD-----VMTQEHAVTAIL 419 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL-------~s~d-----~~~~e~Av~aL~ 419 (636)
.+..++..|.++ +.++.|+.+|..--..-++---.+=. .|.+..|+.=. +.+. ..-.-+|+..|-
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 355666666644 45777777766543322333333333 36666664422 1111 122356677777
Q ss_pred HhhhCcchHHHHHHhCChHHHHHHHhcCc-----HHHHHHHHHHHHHccCCCc--hhHHHHhcCchHHHHhhhccCCHHH
Q 006669 420 NLSIYENNKGLIMLAGAIPSIVQILRAGS-----MEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQNGSTRG 492 (636)
Q Consensus 420 nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~LL~~~~~~~ 492 (636)
-++.+++.+..+.++...--|...|+..+ .-.|..+.++++.|...++ .-..+.+.+.+|..+..+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 78889999999999987777777887542 4578899999999976544 3344556799999999999999999
Q ss_pred HHHHHHHHHhhhhccchHHHHHH--------hchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHHHHHhc------
Q 006669 493 RKDAATALFNLCIYMGNKGRAVR--------AGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAIVKA------ 557 (636)
Q Consensus 493 k~~A~~aL~nL~~~~~n~~~lv~--------~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~------ 557 (636)
|.-|...+..+..++.+-..+.. ..++..+|.-+ .+++..+....+.+-..|+.++.+++++...
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999988776655443332 22333334333 4589999999999999999999999887641
Q ss_pred -CcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 558 -STIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 558 -g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
|.+.. ++ .+++.+|..-...+.|+
T Consensus 242 d~tf~~---~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQ---VL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHH---HH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHHH---HH-hcCHHHHHHHHHHHHhc
Confidence 22222 22 24566666655555554
No 157
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.089 Score=52.66 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=122.8
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCCCc---hhHHHHh-c-CchHHHHhhhccCCHHHHHHHHHHHHhhhhccc---
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLLDE---NKIIIGA-S-GAIPALVDLLQNGSTRGRKDAATALFNLCIYMG--- 508 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~~~~i~~-~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~--- 508 (636)
+| +-+-|.+.++..|..|...|..+..... ....... . ...+.+-..+.+.+..+...++.+|..++....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 5567888899999999988877643211 1111111 1 344556667788899999999998887764321
Q ss_pred -hHH--HHHHhchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669 509 -NKG--RAVRAGIISALLKM-LTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584 (636)
Q Consensus 509 -n~~--~lv~~g~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~ 584 (636)
.+. ...-..+++.|++- +.+....+++.|..++..++........ ++..++..+.+.+|+++..++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 122 22335678888876 7788889999999988877653322222 23455566778899999999888877
Q ss_pred hhcc-ChHH--HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669 585 LCKR-DTEN--LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631 (636)
Q Consensus 585 L~~~-~~~~--~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 631 (636)
+... +... ....+ ..+++.+..++.+.++.+|..|..++-.+.++.
T Consensus 166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 6542 1111 11111 124567788889999999999999998887753
No 158
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.85 E-value=0.33 Score=49.67 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=147.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhc-CCChHHHHHHHHHHHHhhhCcchHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA--GAIPVLVNLLT-TDDVMTQEHAVTAILNLSIYENNKG 429 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~--g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~~~~k~ 429 (636)
.+..|+..|..-+.+.+..+......+-+.....+-..++. .--..|..++. .+++++--++-..|+....++....
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 46667777778888999999888888877655443222211 11122222222 2456667778888999888999888
Q ss_pred HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hh-HHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NK-IIIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCI 505 (636)
Q Consensus 430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~-~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~ 505 (636)
.|...+.+-.+.+.+..++-++...|..++..|-..+. -. ..+... ..+...-.||.+++.-++..++..|..|..
T Consensus 159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLl 238 (341)
T 1upk_A 159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLL 238 (341)
T ss_dssp HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 88888888899999999999999999999998754433 12 222222 456677789999999999999999999999
Q ss_pred ccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669 506 YMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPE 549 (636)
Q Consensus 506 ~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~ 549 (636)
...|...+.. ..-+..++.+|++.+..++-+|..+......+|.
T Consensus 239 dr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 239 DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred CchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 9888766654 4578889999999999999999999998887654
No 159
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.35 E-value=0.033 Score=60.48 Aligned_cols=243 Identities=13% Similarity=0.132 Sum_probs=150.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhc-------CCC---hHHHHHHHHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA--GAIPVLVNLLT-------TDD---VMTQEHAVTAILN 420 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~--g~i~~Lv~lL~-------s~d---~~~~e~Av~aL~n 420 (636)
..+.|+..|-++.+++|--|+-.||.+.+............ ...-.|+-+|. ..| +.++|.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56788899999999999999999999876543110000111 11222333231 122 5789999999988
Q ss_pred hhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH-hcCchHHHHhhhccCCHHHHHHHHHH
Q 006669 421 LSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG-ASGAIPALVDLLQNGSTRGRKDAATA 499 (636)
Q Consensus 421 Ls~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~LL~~~~~~~k~~A~~a 499 (636)
+ .+-... ..++..++..+....++++..+.-.|.++ .+ .+. -.+.++.++.-|.+.+.+++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~D---LL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KE---FVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GG---GCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HH---HHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 632111 23444445445677899999999999998 11 111 13677888888888899999999999
Q ss_pred HHhhhhccchHHHHHHhchHHHHHHHhcCC--CHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH
Q 006669 500 LFNLCIYMGNKGRAVRAGIISALLKMLTDS--RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKEN 577 (636)
Q Consensus 500 L~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~--~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~ 577 (636)
|.-++ .++... .++..+-+.|.+- =..........|+.|++.+.. +-.....||.|.-++++.-..+|..
T Consensus 323 LiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99988 222222 2344445555431 112233456677777776632 1112367899999999999999999
Q ss_pred HHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 006669 578 AAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLE 625 (636)
Q Consensus 578 A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~ 625 (636)
++.+|..+. ++.....+ ...++-..++.+++.+..+-+
T Consensus 395 VL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 999998776 22221111 113344556666666665553
No 160
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.27 E-value=0.51 Score=48.02 Aligned_cols=186 Identities=11% Similarity=0.034 Sum_probs=109.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHH-HHHh----cCcHHHHHHHHHHHHHccCCCchhH
Q 006669 396 IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIV-QILR----AGSMEARENAAATLFSLSLLDENKI 470 (636)
Q Consensus 396 i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv-~lL~----~~~~e~~~~Aa~~L~~Ls~~~~~~~ 470 (636)
+..+.+++ +-..+.+--++.+++-+..++.....+.+.+.-..++ .++. .+.+..+.-+++++.|+-.....+.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 34455555 3334445556666665555555444444322223333 2222 2346668889999999988887777
Q ss_pred HHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhhccch-HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 006669 471 IIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN-KGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLAS 546 (636)
Q Consensus 471 ~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~ 546 (636)
.+... ..++.+...+...+...+..+++.++|++...-+ +..-....++..+..++.. .+.+....++.+|.+|..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 76653 4555555555556888999999999999864211 1000011244445555543 678899999999999997
Q ss_pred ChhhHHHHHhcCcHHHHHH-HHcC-CCHHHHHHHHHHH
Q 006669 547 NPEAKIAIVKASTIPVLIV-LLRT-GLPRNKENAAAIL 582 (636)
Q Consensus 547 ~~~~~~~i~~~g~i~~Lv~-lL~~-~s~~~ke~A~~~L 582 (636)
.+.....+.+.-.+...+. +... ..+++.+.|..+|
T Consensus 264 ~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 264 DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 6554445554433444343 3333 3466777665554
No 161
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.07 E-value=0.018 Score=45.76 Aligned_cols=47 Identities=15% Similarity=0.342 Sum_probs=36.7
Q ss_pred ccCccchhhccCCee-cCCCchhhhHHHHHHHcCC-CCCCCCCCccccc
Q 006669 258 FLCPISLELMRDPVI-VATGQTYERSYIQRWIDCG-NVTCPKTQQKLEH 304 (636)
Q Consensus 258 f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~-~~~cP~~~~~l~~ 304 (636)
-.|+||.+++..=+. ..|||.|=..||.+||... ..+||.|+.....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 469999888853222 3799999999999999753 4789999987653
No 162
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.98 E-value=0.014 Score=44.38 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=38.3
Q ss_pred cccCccchhhccCCeecCCCc-----hhhhHHHHHHHcC-CCCCCCCCCcccc
Q 006669 257 DFLCPISLELMRDPVIVATGQ-----TYERSYIQRWIDC-GNVTCPKTQQKLE 303 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~-----t~~r~~I~~w~~~-~~~~cP~~~~~l~ 303 (636)
.-.|.||++-..+|.+.||.. .|=+.|+++|++. ++.+||+|+.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 346999988878888889643 6889999999974 6789999998764
No 163
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.95 E-value=0.49 Score=47.10 Aligned_cols=178 Identities=12% Similarity=0.124 Sum_probs=114.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcC-CHHHHHHhhcCCChHHHHHHHHHHHHhhh---CcchHHHHH
Q 006669 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG-AIPVLVNLLTTDDVMTQEHAVTAILNLSI---YENNKGLIM 432 (636)
Q Consensus 357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g-~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~---~~~~k~~I~ 432 (636)
+...|-+.+...+.+|+..|......++ +.++...+ .++++.--+.+.++.+...++.+|..+.. ....+-.-.
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 4555666788888888888887654443 23332211 23333323335688888887777766532 111110011
Q ss_pred H-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669 433 L-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511 (636)
Q Consensus 433 ~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~ 511 (636)
+ .-.+|.|++-+..+...+|..+-.++..+... ..-...++.+++-+++.+.+.+..++..+.++-...+-.
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 1 23578888888776777888777777666421 111135566777778889999999999998875444332
Q ss_pred HHHHhchH---HHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669 512 RAVRAGII---SALLKMLTDSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 512 ~lv~~g~v---~~Lv~lL~~~~~~~~~~Al~~L~~La~ 546 (636)
...++ +.+..++.+.+..+++.|+.++..+-.
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 24478 999999999999999999998875544
No 164
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.80 E-value=0.012 Score=48.90 Aligned_cols=51 Identities=8% Similarity=0.161 Sum_probs=40.1
Q ss_pred cCccchhhccC-CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669 259 LCPISLELMRD-PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP 309 (636)
Q Consensus 259 ~CPis~~~m~d-Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p 309 (636)
.||+|.-.... ..++||+|.||..|+..|...+..+||.|+.+....+..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 46766655543 4579999999999999999888899999999886644433
No 165
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.27 E-value=0.96 Score=53.45 Aligned_cols=251 Identities=10% Similarity=0.105 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc------CCChHHHHHHHHHHHHhhhCcchHHHHHHh-----C
Q 006669 367 EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT------TDDVMTQEHAVTAILNLSIYENNKGLIMLA-----G 435 (636)
Q Consensus 367 ~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~------s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~-----G 435 (636)
..+..|...|..++.... ..+.. -.++.+-..+. +.+...++.|+.++..++..-..+..-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 346677778888886543 11211 12333444454 456788899999999887421100000000 1
Q ss_pred ChH----HHHHHHhcC---cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669 436 AIP----SIVQILRAG---SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 436 ~I~----~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~ 508 (636)
..+ .++..|.+. .+.+|..|+++|...+..- .... -...++.++..|.+.++.++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 111 233335555 7899999999999987642 1111 12567888888888889999999999999986421
Q ss_pred ---------hHHHHHH--hchHHHHHHHhcCCC---HH--HHHHHHHHHHHHhcCh--hhHHHHHhcCcHHHHHHHHc--
Q 006669 509 ---------NKGRAVR--AGIISALLKMLTDSR---NC--MVDEALTILSVLASNP--EAKIAIVKASTIPVLIVLLR-- 568 (636)
Q Consensus 509 ---------n~~~lv~--~g~v~~Lv~lL~~~~---~~--~~~~Al~~L~~La~~~--~~~~~i~~~g~i~~Lv~lL~-- 568 (636)
.+..+.. ..+++.|+.++.... .. ..+.++.+|..++..- +....+ ...++.|+..+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Confidence 1332322 346667777776531 11 2245556665554311 111100 113444544443
Q ss_pred --C-CCHHHHHHHHHHHHHhhcc-ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669 569 --T-GLPRNKENAAAILLSLCKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627 (636)
Q Consensus 569 --~-~s~~~ke~A~~~L~~L~~~-~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 627 (636)
+ .++..+..+..+|..++.. +++....+ ....++.+..++..........+..++..+
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 2 2456666677777777665 33333333 233567777777665444444455554444
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.85 E-value=1.1 Score=45.64 Aligned_cols=137 Identities=10% Similarity=0.063 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhhhhccchHHHHHH--hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh---hHHHHHhcCcHHH
Q 006669 488 GSTRGRKDAATALFNLCIYMGNKGRAVR--AGIISALLKMLTDSRNCMVDEALTILSVLASNPE---AKIAIVKASTIPV 562 (636)
Q Consensus 488 ~~~~~k~~A~~aL~nL~~~~~n~~~lv~--~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~---~~~~i~~~g~i~~ 562 (636)
+++..+..+++++.|+..+...+..+.. ..++..+...+.+.+..++..+..++.|++...- ..+.. ...+..
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~ 237 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL 237 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence 3566788899999999988888877765 3456666666666788888888999999987311 11111 113444
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHH
Q 006669 563 LIVLLRT-GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEH 626 (636)
Q Consensus 563 Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~ 626 (636)
+..++.. .+++..-.++.+|.+|...+++....+...|+...+-.+... ..+++.+.|..+|..
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 4555553 456777778888888887776666666666766666666654 467788888777654
No 167
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.38 E-value=1.4 Score=43.88 Aligned_cols=184 Identities=11% Similarity=0.065 Sum_probs=114.4
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHH----HhcCcHHHHHHHHHHHHHccC---CCchhHH
Q 006669 399 LVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQI----LRAGSMEARENAAATLFSLSL---LDENKII 471 (636)
Q Consensus 399 Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~l----L~~~~~e~~~~Aa~~L~~Ls~---~~~~~~~ 471 (636)
+...|.+.|...+..|+..|..... .+...+.. .+..+++- +.+.++.+...+..+|..+.. ..+++..
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4444555666666666666655432 12222211 22333332 235567777777766666521 1112211
Q ss_pred HHh-cCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Q 006669 472 IGA-SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA 550 (636)
Q Consensus 472 i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~ 550 (636)
-.+ .-.+|.|++-+.+....++..+-.++..++... --..+++.+++-+.+.+...++.++..+..+-.....
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 111 247899999998888888888777776665311 1123667778888889999999999999888653221
Q ss_pred HHHHHhcCcH---HHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHH
Q 006669 551 KIAIVKASTI---PVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACI 596 (636)
Q Consensus 551 ~~~i~~~g~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i 596 (636)
. ...++ +.+..++.+.+..+|+.|..++..+....++.....
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1 23467 999999999899999999999988776555444433
No 168
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.29 E-value=0.74 Score=45.21 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC-----hHHHHHHHHHHHHhhhC--cchHHHHHHhCChHHHHH
Q 006669 370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD-----VMTQEHAVTAILNLSIY--ENNKGLIMLAGAIPSIVQ 442 (636)
Q Consensus 370 ~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d-----~~~~e~Av~aL~nLs~~--~~~k~~I~~~G~I~~Lv~ 442 (636)
..|+..+.-+|. +++.|..+.++...-.|-.+|...+ ...+-.++.++..|.+. ++.-..+.+.+.||..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 456666777785 7889999999987777888886543 35677888888999883 344566678899999999
Q ss_pred HHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-C-------chHHHHh-hhccCCHHHHHHHHHHHHhhhhccchHHHH
Q 006669 443 ILRAGSMEARENAAATLFSLSLLDENKIIIGAS-G-------AIPALVD-LLQNGSTRGRKDAATALFNLCIYMGNKGRA 513 (636)
Q Consensus 443 lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g-------~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~~~~n~~~l 513 (636)
.+..|+.-.+.-|.-++..+-.++..-..+... . .+..+|. +.++.+++..+..+++-..|+.+...|..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999988777655555432 1 2222332 334568899999999988898877666655
Q ss_pred HH
Q 006669 514 VR 515 (636)
Q Consensus 514 v~ 515 (636)
-.
T Consensus 233 ~~ 234 (268)
T 2fv2_A 233 RQ 234 (268)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 169
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.05 E-value=0.015 Score=59.42 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=37.7
Q ss_pred cccCccchhhccC----Cee----cCCCchhhhHHHHHHHcCCC----------CCCCCCCccccc
Q 006669 257 DFLCPISLELMRD----PVI----VATGQTYERSYIQRWIDCGN----------VTCPKTQQKLEH 304 (636)
Q Consensus 257 ~f~CPis~~~m~d----Pv~----~~~G~t~~r~~I~~w~~~~~----------~~cP~~~~~l~~ 304 (636)
..-|+||...+.+ |.. ..|||.|-..||.+|+.+.. .+||-|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3469999999877 433 47899999999999997421 469999998753
No 170
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.65 E-value=0.082 Score=52.19 Aligned_cols=67 Identities=18% Similarity=0.010 Sum_probs=42.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 006669 522 LLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGA 601 (636)
Q Consensus 522 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~ 601 (636)
|..++.+.+..++..++..| ..+.|..++...++.++..++..+-
T Consensus 175 l~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------ 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS------------------ 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC------------------
T ss_pred HHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC------------------
Confidence 33455666666666555432 2355666677777777777776641
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHH
Q 006669 602 VIPLTELTKSGTERAKRKATSLL 624 (636)
Q Consensus 602 i~~L~~Ll~~g~~~~k~kA~~lL 624 (636)
.+.|..| ++.+..+++.|...|
T Consensus 220 ~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHc-cCCCHHHHHHHHHHh
Confidence 3566667 888888888876543
No 171
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.05 E-value=0.41 Score=52.15 Aligned_cols=212 Identities=13% Similarity=0.097 Sum_probs=133.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHH---h--------cC--cHHHHHHHHHHHH
Q 006669 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQIL---R--------AG--SMEARENAAATLF 460 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL---~--------~~--~~e~~~~Aa~~L~ 460 (636)
....|+.-|-++..+++--|+.+|+.+.. +............ ...++++ . ++ -..+|+.|+.+|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 34556666677899999999999999876 3211111111111 3333333 1 11 3579999999999
Q ss_pred HccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 006669 461 SLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTI 540 (636)
Q Consensus 461 ~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~ 540 (636)
.+...++. ...+..|+..+....++++.-++-.|..+ .+-... =.++++.++.-|.+.+++++..|+.+
T Consensus 254 aL~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 254 RIYPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp HHTTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 98222322 34556666666777899999999999988 111101 25688889999999999999999999
Q ss_pred HHHHhcChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 006669 541 LSVLASNPEAKIAIVKASTIPVLIVLLRTGL--PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKR 618 (636)
Q Consensus 541 L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s--~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~ 618 (636)
|.-++ .++....+ +..+-+.|...+ ..........|..||..++. .......+|.|+-++...-..+|.
T Consensus 323 LiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 323 LCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp HTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHHH
T ss_pred hhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHHH
Confidence 99888 33332222 233334443211 11233455677777776531 111246789999999999999999
Q ss_pred HHHHHHHHh
Q 006669 619 KATSLLEHL 627 (636)
Q Consensus 619 kA~~lL~~l 627 (636)
.+..+|..+
T Consensus 394 AVL~TL~tf 402 (800)
T 3oc3_A 394 SILNMVKNL 402 (800)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHHHH
Confidence 888776543
No 172
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.91 E-value=9.7 Score=44.76 Aligned_cols=218 Identities=11% Similarity=0.143 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHH---h-cCCHH----HHHHhhcCC---ChHHHHHHHHHHHHhhhCcchHHHH
Q 006669 363 SRSVEERRAAVAEIRSLSKRSTDNRIIIA---D-AGAIP----VLVNLLTTD---DVMTQEHAVTAILNLSIYENNKGLI 431 (636)
Q Consensus 363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~---e-~g~i~----~Lv~lL~s~---d~~~~e~Av~aL~nLs~~~~~k~~I 431 (636)
+.++..++.|+..+..++.........+. . ....+ .++..|.+. ++.++..|+++|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 56778888999999998753110000000 0 01122 234445555 7889999999999998632 1221
Q ss_pred HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc---------hhHHHHhc--CchHHHHhhhccCC---HH--HHHH
Q 006669 432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE---------NKIIIGAS--GAIPALVDLLQNGS---TR--GRKD 495 (636)
Q Consensus 432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---------~~~~i~~~--g~i~~Lv~LL~~~~---~~--~k~~ 495 (636)
-...++.++..|.+.+..++..|+.+|.+++...+ .+..+... ..++.|+.++.... +. ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23356778888877789999999999999876421 13333321 45566667776641 11 2345
Q ss_pred HHHHHHhhhhcc-chHHHHHHhchHHHHHHHh----cC-CCHHHHHHHHHHHHHHhcC--hhhHHHHHhcCcHHHHHHHH
Q 006669 496 AATALFNLCIYM-GNKGRAVRAGIISALLKML----TD-SRNCMVDEALTILSVLASN--PEAKIAIVKASTIPVLIVLL 567 (636)
Q Consensus 496 A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL----~~-~~~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL 567 (636)
++.+|..++... +.-.... ...++.|+..+ .+ .+......++.+|..++.. ++....+ ....+|.+..+|
T Consensus 573 l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL 650 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHH
Confidence 666666654321 1111111 12444455444 22 3556666677787777664 3332222 335567777777
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 006669 568 RTGLPRNKENAAAILLSL 585 (636)
Q Consensus 568 ~~~s~~~ke~A~~~L~~L 585 (636)
........+.+..++..+
T Consensus 651 ~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HTTCTTTHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHH
Confidence 654444455555554443
No 173
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.06 E-value=0.14 Score=52.99 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=50.5
Q ss_pred CcccCccchhhccCCee-cCCCch--hhhHHHHHHHc-CCCCCCCCCCcccccCCcccchhHHHHHHH
Q 006669 256 ADFLCPISLELMRDPVI-VATGQT--YERSYIQRWID-CGNVTCPKTQQKLEHLTLTPNYVLRSLISQ 319 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~-~~~G~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~ 319 (636)
-.+.||+|...|..|+- ..|.|. ||...+-+... .+.-.||+|.+.+...++.....+.+++.+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 45899999999999996 789887 99888766654 455679999999988888776666555543
No 174
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.98 E-value=0.1 Score=43.83 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=29.4
Q ss_pred CcccCccchh-hccCCee--cCCCchhhhHHHHHHHc
Q 006669 256 ADFLCPISLE-LMRDPVI--VATGQTYERSYIQRWID 289 (636)
Q Consensus 256 ~~f~CPis~~-~m~dPv~--~~~G~t~~r~~I~~w~~ 289 (636)
+++.|+||.+ ...+||. +.||++||+.+++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4678999996 4799999 99999999999998543
No 175
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.85 E-value=8.9 Score=44.99 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh---c--cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHH
Q 006669 447 GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL---Q--NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISA 521 (636)
Q Consensus 447 ~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL---~--~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~ 521 (636)
.++..++.|+.++..++..-.... ...++.++.++ . +.++.++..++++|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 467789999999999875422111 13344444433 2 3478999999999998875422211211 236677
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcc
Q 006669 522 LLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRTG--LPRNKENAAAILLSLCKR 588 (636)
Q Consensus 522 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~ 588 (636)
|+..| + +.+...|+.++.+++.. .+..+.. ...+..+..++..+ +...++.+..++..+...
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 77777 3 67889999999999953 3333432 24556666777663 477888888888877654
No 176
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.78 E-value=9.1 Score=36.97 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=102.5
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC----C-------ChHHHHHHHHHHHHhhh
Q 006669 357 LVRKLSSRS-VEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTT----D-------DVMTQEHAVTAILNLSI 423 (636)
Q Consensus 357 Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s----~-------d~~~~e~Av~aL~nLs~ 423 (636)
.++.|++.. .+...+-+..|+..-+.++ .--..+ ..+|+..|+.+|.. + +...+..++.+|..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 345555432 2222233444443333332 223334 46788888888752 1 34567788899988887
Q ss_pred CcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--h-hHHH----------HhcCchHHHHhhhccC-
Q 006669 424 YENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--N-KIII----------GASGAIPALVDLLQNG- 488 (636)
Q Consensus 424 ~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~LL~~~- 488 (636)
+......++. .+++..|+..|.+.++.++..++.+|..++..++ + ...+ .+..-+.++++.+++.
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~ 163 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 163 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC
Confidence 7766666665 6788888888888889999999998888876643 3 2222 2224567788888754
Q ss_pred CHHHHHHHHHHHHh-hhhccch-------HHHHHHhchHHHHHHHhcCCCHHH
Q 006669 489 STRGRKDAATALFN-LCIYMGN-------KGRAVRAGIISALLKMLTDSRNCM 533 (636)
Q Consensus 489 ~~~~k~~A~~aL~n-L~~~~~n-------~~~lv~~g~v~~Lv~lL~~~~~~~ 533 (636)
+.+.+. ++-.+.| +....++ |..+...|..+.+-.+=...++.+
T Consensus 164 ~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 164 SIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 215 (233)
T ss_dssp CHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred hHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHH
Confidence 344444 4444445 4333332 445556776665554433344443
No 177
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.53 E-value=16 Score=42.85 Aligned_cols=211 Identities=15% Similarity=0.077 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHH---h--cCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchH
Q 006669 406 DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQIL---R--AGSMEARENAAATLFSLSLLD-ENKIIIGASGAIP 479 (636)
Q Consensus 406 ~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL---~--~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~ 479 (636)
.+...++.|+.++..++..-.... ...++.++.++ . +..+.++..+++++..++..- ++...+ ...++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 567788999999999876322111 13345555544 2 237889999999999887431 111111 13455
Q ss_pred HHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH--hchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcC-h-hhHHH
Q 006669 480 ALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR--AGIISALLKMLTD--SRNCMVDEALTILSVLASN-P-EAKIA 553 (636)
Q Consensus 480 ~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~--~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~-~-~~~~~ 553 (636)
.|+..| + ++++..|+.++.+++... +..+.. ..++..|.+++.. .+...+..+..++..++.. + +....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666666 3 678999999999998532 333332 3566667777765 3567777888888877653 2 33322
Q ss_pred HHhcCcHHHHHHHH----cCC--CHHHHHHHHHHHHHhhcc-----C-----------hHHHHHHHHcCChHHHHHhhhc
Q 006669 554 IVKASTIPVLIVLL----RTG--LPRNKENAAAILLSLCKR-----D-----------TENLACISRLGAVIPLTELTKS 611 (636)
Q Consensus 554 i~~~g~i~~Lv~lL----~~~--s~~~ke~A~~~L~~L~~~-----~-----------~~~~~~i~~~G~i~~L~~Ll~~ 611 (636)
... ..+++++..+ ... ++..+......|..|+.- . ++.... .....++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHh
Confidence 222 2334444433 322 343444455455444321 0 000111 123467777777654
Q ss_pred --CCHHHHHHHHHHHHHhhc
Q 006669 612 --GTERAKRKATSLLEHLRK 629 (636)
Q Consensus 612 --g~~~~k~kA~~lL~~l~~ 629 (636)
.++.+.+.+..+++.+..
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 367889999988887654
No 178
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.69 E-value=19 Score=37.64 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=108.3
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC-----------CChHHHHHHHHHHHHh
Q 006669 355 EALVRKLSSRS-VEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTT-----------DDVMTQEHAVTAILNL 421 (636)
Q Consensus 355 ~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s-----------~d~~~~e~Av~aL~nL 421 (636)
...+..|.++. .+.....+..|+.--+.++ .--..+. .+|+..|+.+|.. .+...+..++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34556665543 2222334555554333332 2233444 6778888888841 2446778888999988
Q ss_pred hhCcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--h-hHH----------HHhcCchHHHHhhhcc
Q 006669 422 SIYENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--N-KII----------IGASGAIPALVDLLQN 487 (636)
Q Consensus 422 s~~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~----------i~~~g~i~~Lv~LL~~ 487 (636)
..+......++. ..+|..|+..|.+..+.++..+..+|..++..++ + ... .++..-+..++..|++
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 877767666665 6788999999988899999999999988876653 2 222 2233567888999887
Q ss_pred C-CHHHHHHHHHHHHhhhhccch-------HHHHHHhchHHHHHHHhcC-CCHHH
Q 006669 488 G-STRGRKDAATALFNLCIYMGN-------KGRAVRAGIISALLKMLTD-SRNCM 533 (636)
Q Consensus 488 ~-~~~~k~~A~~aL~nL~~~~~n-------~~~lv~~g~v~~Lv~lL~~-~~~~~ 533 (636)
+ +.+.+..++..+=.+....++ |..+...|..+.+-. |+. .++.+
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L 281 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM 281 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence 4 455554444433334443332 445556776666655 544 44433
No 179
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=88.03 E-value=0.41 Score=49.40 Aligned_cols=64 Identities=13% Similarity=0.272 Sum_probs=50.5
Q ss_pred CCcccCccchhhccCCee-cCCCch--hhhHHHHHHHc-CCCCCCCCCCcccccCCcccchhHHHHHH
Q 006669 255 PADFLCPISLELMRDPVI-VATGQT--YERSYIQRWID-CGNVTCPKTQQKLEHLTLTPNYVLRSLIS 318 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~-~~~G~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~pn~~lr~lI~ 318 (636)
.-.+.||||...|+-|+- ..|.|. ||...+-+... .+.-.||+|++.+...++.-...+.+.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 346899999999999996 789887 99888777664 45567999999998888876655555544
No 180
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=87.75 E-value=5.1 Score=38.80 Aligned_cols=129 Identities=18% Similarity=0.150 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--h-HHHHHh----------
Q 006669 491 RGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLASNPE--A-KIAIVK---------- 556 (636)
Q Consensus 491 ~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~-~~~i~~---------- 556 (636)
.....++.+|..+..+..+...++. .+++..|+..|.+.+..++..++.+|..+|..++ | ...+.+
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e 148 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 148 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence 4456777888888777777777766 6789999999988899999999999999998654 5 444332
Q ss_pred cCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh------HHHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 006669 557 ASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT------ENLACISRLGAVIPLTELTKSGTERAKRK 619 (636)
Q Consensus 557 ~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~------~~~~~i~~~G~i~~L~~Ll~~g~~~~k~k 619 (636)
..-...+++.++.. +...+..+...+-.+....+ .-+.++...|..+.+-.+-..+++.....
T Consensus 149 ~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 149 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 23466677777643 34555555555555555443 23445567787777777766666665543
No 181
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.35 E-value=6 Score=42.39 Aligned_cols=128 Identities=21% Similarity=0.238 Sum_probs=92.8
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcC
Q 006669 479 PALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKAS 558 (636)
Q Consensus 479 ~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g 558 (636)
..++.. ..|+...|+.|+..|.....+-+..+ ..++.+++++..+.+..++..|+.-|..+|.. +....+
T Consensus 32 ~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki---- 101 (507)
T 3u0r_A 32 QVILDG-VKGGTKEKRLAAQFIPKFFKHFPELA----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV---- 101 (507)
T ss_dssp HHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH----
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH----
Confidence 334443 34678999999998887665444322 23677899999999999999999999999997 554433
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLE 625 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~ 625 (636)
+..|+++|.+..+......-..|..+...++. |.+..|...+.+|++.+|+++...|+
T Consensus 102 -aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 102 -ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp -HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 56889999988877777777777777765543 34556666666678888888776664
No 182
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=86.67 E-value=9.4 Score=39.91 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=93.7
Q ss_pred cCchHHHHhhhcc-----------CCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHH
Q 006669 475 SGAIPALVDLLQN-----------GSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILS 542 (636)
Q Consensus 475 ~g~i~~Lv~LL~~-----------~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~ 542 (636)
.+|+..|+.+|.. .+......++.+|..+.-+..+...++. ...|..|+..|.+.+..++..|+.+|+
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3456666666541 1235556677888888776667666666 678999999998899999999999999
Q ss_pred HHhcChh--h-HHHHHh----------cCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh--H----HHHHHHHcCCh
Q 006669 543 VLASNPE--A-KIAIVK----------ASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT--E----NLACISRLGAV 602 (636)
Q Consensus 543 ~La~~~~--~-~~~i~~----------~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~--~----~~~~i~~~G~i 602 (636)
.+|..++ | ...+.+ ..-...++..|+.. +...+..+...+-.++...+ + .+.++...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9998654 3 443332 23467788888763 45555555555555665443 2 33445677877
Q ss_pred HHHHHhhhcCCHHH
Q 006669 603 IPLTELTKSGTERA 616 (636)
Q Consensus 603 ~~L~~Ll~~g~~~~ 616 (636)
+.+-.+-..+++..
T Consensus 268 ~il~~lr~~~~~~L 281 (383)
T 3eg5_B 268 QVLQELREIENEDM 281 (383)
T ss_dssp HHHHHHTTSCCHHH
T ss_pred HHHHHHhcCCChhH
Confidence 77777554445544
No 183
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.27 E-value=17 Score=38.89 Aligned_cols=171 Identities=19% Similarity=0.168 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM 432 (636)
Q Consensus 353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~ 432 (636)
....++..- .++..+++-|+..|....++-|+.... ++..++.+...+|..++..|+..|-.++++ ++-..+
T Consensus 30 ~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki- 101 (507)
T 3u0r_A 30 AYQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV- 101 (507)
T ss_dssp HHHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-
Confidence 344555543 457889999999999999988877654 467899999999999999999999999988 554444
Q ss_pred HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh--ccchH
Q 006669 433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI--YMGNK 510 (636)
Q Consensus 433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~--~~~n~ 510 (636)
...|+.+|...++.-....-.+|..|-..+. .+.+..|..-+..+++.+++.++.-|..=.. ..+..
T Consensus 102 ----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l 170 (507)
T 3u0r_A 102 ----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVL 170 (507)
T ss_dssp ----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred ----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhc
Confidence 4567888887765444444444444422221 1445555555556677777777766643111 11112
Q ss_pred HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 006669 511 GRAVRAGIISALLKMLTDSRNCMVDEALTILS 542 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~ 542 (636)
..-++.-++..+-+.|.+....--.....+|.
T Consensus 171 ~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~ 202 (507)
T 3u0r_A 171 TKEVEELILTESKKVLEDVTGEEFVLFMKILS 202 (507)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 23333334555555565554444444445553
No 184
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=85.10 E-value=0.64 Score=45.71 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=23.8
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 006669 479 PALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTI 540 (636)
Q Consensus 479 ~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~ 540 (636)
+.|..++.+.++.++..++..+. .+.|..+ .+.+..++..|...
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHH
Confidence 44555555555555555555431 3444444 66677766666543
No 185
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=84.79 E-value=15 Score=42.92 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=93.9
Q ss_pred cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh---cCCChHHHHHHHHHHHHhhhC-cchHHHHHHhCCh
Q 006669 362 SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL---TTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAI 437 (636)
Q Consensus 362 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL---~s~d~~~~e~Av~aL~nLs~~-~~~k~~I~~~G~I 437 (636)
.+.++..++.++..+..++..-.... ...++.++..+ ..+++.++..++.++..++.. ..+.. . -...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHH
Confidence 45678889999999999886533211 12344455444 335688899999999988762 22222 2 24678
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhccC--CHHHHHHHHHHHHhhhhcc--chHH
Q 006669 438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQNG--STRGRKDAATALFNLCIYM--GNKG 511 (636)
Q Consensus 438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~~~--~~~~k~~A~~aL~nL~~~~--~n~~ 511 (636)
+.++..|.+ +.++..|+.+|.+++.. .+..+... ..+..|..++..+ +...+..+..++..+.... +...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888754 78889999999999843 22222211 3344445555543 5678888888888876543 2333
Q ss_pred HHHHhchHHHHHHHh
Q 006669 512 RAVRAGIISALLKML 526 (636)
Q Consensus 512 ~lv~~g~v~~Lv~lL 526 (636)
..+ ...++++...+
T Consensus 608 ~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 608 KNL-HSLISPYIQQL 621 (963)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH
Confidence 333 23555555544
No 186
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.66 E-value=29 Score=36.20 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=102.8
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcC----C-------ChHHHHHHHHHHHHhhh
Q 006669 357 LVRKLSSRSV-EERRAAVAEIRSLSKRSTDN-RIIIADAGAIPVLVNLLTT----D-------DVMTQEHAVTAILNLSI 423 (636)
Q Consensus 357 Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~-r~~i~e~g~i~~Lv~lL~s----~-------d~~~~e~Av~aL~nLs~ 423 (636)
.|+.|.+... ......+..|+..-+.++-. -..+. .+|+..|+.+|.. . +...+..++.+|..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 4555554322 21122344444433333322 23333 5778888887742 1 34567788899988887
Q ss_pred CcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--h-hHHH----------HhcCchHHHHhhhccC-
Q 006669 424 YENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--N-KIII----------GASGAIPALVDLLQNG- 488 (636)
Q Consensus 424 ~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~LL~~~- 488 (636)
+..+...++. .+++..|+..|.+.++.++..++.+|..++..++ + ...+ .+..-+..+|+.+.++
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~ 167 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 167 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCC
Confidence 7666666665 6788888888888889999999988888776653 2 2222 2234677788888754
Q ss_pred CHHHHHHHHHHHHh-hhhccch-------HHHHHHhchHHHHHHHhcCCCHHH
Q 006669 489 STRGRKDAATALFN-LCIYMGN-------KGRAVRAGIISALLKMLTDSRNCM 533 (636)
Q Consensus 489 ~~~~k~~A~~aL~n-L~~~~~n-------~~~lv~~g~v~~Lv~lL~~~~~~~ 533 (636)
+.+.+. ++-.+.| +....++ |..+...|..+.+-.+=...++.+
T Consensus 168 ~~e~~~-a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 168 SIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp CHHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred hHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 444444 4444555 4433332 455666776666554433345444
No 187
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=84.56 E-value=12 Score=43.65 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=101.9
Q ss_pred hcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh---ccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHH
Q 006669 445 RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL---QNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISA 521 (636)
Q Consensus 445 ~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL---~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~ 521 (636)
.+.++..++.++.++..++..-... ....++.++..+ .++++.++..+++++..++..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 3457888999999999987542210 012333444333 33578899999999998875422212233 358888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhccCh-HHHHHH
Q 006669 522 LLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRT--GLPRNKENAAAILLSLCKRDT-ENLACI 596 (636)
Q Consensus 522 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~i 596 (636)
|+..|.+ +.+...|+.+|.++|.. .+..+.. ...+..|..++.. .+...++.+..++..+....+ +.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 78899999999999962 2222211 1234445555554 256788888888888775443 333332
Q ss_pred HHcCChHHHHHhh----hcC-CHHHHHHHHHHHHHh
Q 006669 597 SRLGAVIPLTELT----KSG-TERAKRKATSLLEHL 627 (636)
Q Consensus 597 ~~~G~i~~L~~Ll----~~g-~~~~k~kA~~lL~~l 627 (636)
.+ ..++++...+ .+. ++..+.....++..|
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 22 1343443332 232 566666555555544
No 188
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.37 E-value=11 Score=39.46 Aligned_cols=129 Identities=18% Similarity=0.150 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--h-HHHHH----------
Q 006669 490 TRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLASNPE--A-KIAIV---------- 555 (636)
Q Consensus 490 ~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~-~~~i~---------- 555 (636)
......++.+|..+..+..+...++. .+++..|+..|...+..++..++.+|..+|..++ | ...+.
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 34566677888888777767666666 6788999999988889999999999999998654 5 43332
Q ss_pred hcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh------HHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 006669 556 KASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT------ENLACISRLGAVIPLTELTKSGTERAKR 618 (636)
Q Consensus 556 ~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~------~~~~~i~~~G~i~~L~~Ll~~g~~~~k~ 618 (636)
+..-+..+++.+..+ +...+..+...+-.+....+ ..+.++...|..+.|-.+-..+++....
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence 223466688877643 45555555555555665444 2344566778777777776656665543
No 189
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=83.38 E-value=12 Score=38.42 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=84.7
Q ss_pred HHHhhhCcch-HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc-cCCHHHHHH
Q 006669 418 ILNLSIYENN-KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ-NGSTRGRKD 495 (636)
Q Consensus 418 L~nLs~~~~~-k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~-~~~~~~k~~ 495 (636)
|+||..++.+ -.-+++..++..+..+.+-++.+........|...|....-+ .+--...+|.++.++. ++..++...
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccCCCcceEEe
Confidence 5677777666 566788999999999999999999999999988887543211 1112267788888776 567888899
Q ss_pred HHHHHHhhhhcc-chHHHHHHhchHHHHHHHhc
Q 006669 496 AATALFNLCIYM-GNKGRAVRAGIISALLKMLT 527 (636)
Q Consensus 496 A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~ 527 (636)
..+.|.|...+. +.+...+..|+|+.|-..+.
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 999999987766 56888889999999988864
No 190
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=83.08 E-value=6.9 Score=46.51 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=87.4
Q ss_pred CcHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhccC-----CHHHHHHHHHHHHhhhhccchHHHHHHhchHH
Q 006669 447 GSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNG-----STRGRKDAATALFNLCIYMGNKGRAVRAGIIS 520 (636)
Q Consensus 447 ~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~~~-----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~ 520 (636)
.++..++.++.+++.++..... ...-.-..+++.|+.++... ...++..++++|...+..-....... ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 4799999999999999865432 12212225778888887641 23344566677776654322222332 23666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh------cCcHHHHHHHH----cCCCHHHHHHHHHHHHHhhccCh
Q 006669 521 ALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK------ASTIPVLIVLL----RTGLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 521 ~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~------~g~i~~Lv~lL----~~~s~~~ke~A~~~L~~L~~~~~ 590 (636)
.|++.|.+.++++.+.|+.++.+||.. ++..+.. ...++.++..+ ..-.+.....+..++..+...-+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 677777777889999999999999973 3344432 12344444433 23456666677777776665443
No 191
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=81.30 E-value=28 Score=41.28 Aligned_cols=222 Identities=13% Similarity=0.089 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhh-----
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSI----- 423 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~----- 423 (636)
+...+..+++.+-+++.+.|.+|-..|..+.+. + +++..+..+|. +.+..++..|+..|.|...
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 344566666666667777788888888777543 2 34445555554 4578889999999988753
Q ss_pred -CcchHHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHH
Q 006669 424 -YENNKGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAA 497 (636)
Q Consensus 424 -~~~~k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~ 497 (636)
.++.+..| +...+..+...-..+ +..++...+.++..++..+--. .-.+.++.|+.+++ .++..+..++
T Consensus 84 l~~~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l 158 (1049)
T 3m1i_C 84 LPNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNM 158 (1049)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHH
Confidence 22334433 222333333322111 2455666666666664321100 11367888888886 5566677777
Q ss_pred HHHHhhhhc-----cc----hH-----HHHHH--hchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcH
Q 006669 498 TALFNLCIY-----MG----NK-----GRAVR--AGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTI 560 (636)
Q Consensus 498 ~aL~nL~~~-----~~----n~-----~~lv~--~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i 560 (636)
.+|..|+.. .+ .| ..+.+ ..++..+...+.+ .+..+...++.++......-+. ..+.+...+
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll 237 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNIL 237 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHH
Confidence 777777521 01 11 11222 1233444555533 4677888899999887664332 224455666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669 561 PVLIVLLRTGLPRNKENAAAILLSLCKR 588 (636)
Q Consensus 561 ~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 588 (636)
+.+.+.+. .++..+..|+.+|..+...
T Consensus 238 ~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 238 ELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 66663222 3678888999998888764
No 192
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.86 E-value=12 Score=44.34 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC---Ch--HHHHHHHHHHHHhhhC-cchHHHHHHhCCh
Q 006669 364 RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD---DV--MTQEHAVTAILNLSIY-ENNKGLIMLAGAI 437 (636)
Q Consensus 364 ~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~---d~--~~~e~Av~aL~nLs~~-~~~k~~I~~~G~I 437 (636)
.++..++.++.+++.++..-.+....-.-..+++.|+.++... |+ .++..++.+|...+.. ..+...+ ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 5799999999999999865433322111124677788877531 22 2334566777666541 1111111 1223
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh------cCchHHHHhhhc----cCCHHHHHHHHHHHHhhhhcc
Q 006669 438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA------SGAIPALVDLLQ----NGSTRGRKDAATALFNLCIYM 507 (636)
Q Consensus 438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~------~g~i~~Lv~LL~----~~~~~~k~~A~~aL~nL~~~~ 507 (636)
..|++.+...++.++..|+.++.+|+.. .+..+.. ...++.++..+. .-+......+..++..+...-
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 3344444455688999999999999853 3333332 124454444332 345666677777787776554
Q ss_pred c
Q 006669 508 G 508 (636)
Q Consensus 508 ~ 508 (636)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 3
No 193
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=76.95 E-value=1.1 Score=37.54 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=29.8
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcCC
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG 291 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~ 291 (636)
.+.||+|++.+..+.++|+ ...|..|+.|...+
T Consensus 63 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLEPV--PELKEQIQAWMREK 95 (100)
T ss_dssp CSBCSSSCCBCCTTSSEEC--HHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCChhhceEC--HHHHHHHHHHHHHh
Confidence 5789999999998888999 89999999999764
No 194
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=76.46 E-value=1.8 Score=42.36 Aligned_cols=47 Identities=15% Similarity=0.356 Sum_probs=35.3
Q ss_pred ccCccchhhccCCeec-CCCchhhhHHHHHHHcC-CCCCCCCCCccccc
Q 006669 258 FLCPISLELMRDPVIV-ATGQTYERSYIQRWIDC-GNVTCPKTQQKLEH 304 (636)
Q Consensus 258 f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~-~~~~cP~~~~~l~~ 304 (636)
..|.||.++..--+.= .||+.|-+.|+.+|+.. ++..||.|+.+.+.
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4588888887532222 28899999999999975 35689999987654
No 195
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=75.67 E-value=30 Score=33.43 Aligned_cols=142 Identities=14% Similarity=0.054 Sum_probs=95.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHh-hhccCCHHHHHHHHHHHHhhhh-ccchHHHHHHh
Q 006669 439 SIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVD-LLQNGSTRGRKDAATALFNLCI-YMGNKGRAVRA 516 (636)
Q Consensus 439 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~-~~~n~~~lv~~ 516 (636)
..-.+..+...++|..|+..|..+ ... ...++.+.. +-.+.+.++++.++.++..++. .+..+
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------ 139 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------ 139 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT------
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH------
Confidence 333445566788999999988877 211 124455555 4446789999999999999885 33322
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHH
Q 006669 517 GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKA-STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC 595 (636)
Q Consensus 517 g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 595 (636)
.++.+.....+++..++..|...+.--+..+.-+ .+. -+++.|-.+..+.+.-++...+..|..++..+|+-+..
T Consensus 140 -~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 140 -ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp -THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 5677888888999999988877765433322110 011 13444444555677889999999999999999988777
Q ss_pred HHHc
Q 006669 596 ISRL 599 (636)
Q Consensus 596 i~~~ 599 (636)
+++.
T Consensus 216 ~~~~ 219 (240)
T 3l9t_A 216 ELKN 219 (240)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6653
No 196
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=75.10 E-value=1e+02 Score=36.62 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhC----
Q 006669 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIY---- 424 (636)
Q Consensus 350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~---- 424 (636)
+-..+..++..+-+++.+.+.+|-..|..+-+ +++ ++..+..+|.+ .++.++--|+..|.+....
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 45578888888888888888888888877654 333 34444455543 5788899999999887542
Q ss_pred -cchHHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHH
Q 006669 425 -ENNKGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAAT 498 (636)
Q Consensus 425 -~~~k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~ 498 (636)
+.....-++...+..+...-.++ ++..+...+.++..+...+-.. .-.+.++.++.+++. ++......+.
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~ 171 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMV 171 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHH
Confidence 22222223333444444443221 3445555566666554221000 113677777877754 4556677777
Q ss_pred HHHhhhhc--c-------chH-----HHHHH--hchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHH
Q 006669 499 ALFNLCIY--M-------GNK-----GRAVR--AGIISALLKMLT-DSRNCMVDEALTILSVLASNPEAKIAIVKASTIP 561 (636)
Q Consensus 499 aL~nL~~~--~-------~n~-----~~lv~--~g~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~ 561 (636)
.|..|+.. + ..| ..+.+ ..+++.+...|. ..++.+...++.+|....+.-+. ..+.+.+.++
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~ 250 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLIS 250 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHH
Confidence 77777533 1 011 11222 123344444443 36778888899999999887543 3566777788
Q ss_pred HHH-HHHcCCCHHHHHHHHHHHHHhhcc
Q 006669 562 VLI-VLLRTGLPRNKENAAAILLSLCKR 588 (636)
Q Consensus 562 ~Lv-~lL~~~s~~~ke~A~~~L~~L~~~ 588 (636)
.|+ .+| .++..+..|+.+|..+...
T Consensus 251 ~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 251 TLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 774 554 5688999999999998765
No 197
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=75.05 E-value=97 Score=36.54 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=77.1
Q ss_pred CcHHHHHHHHHHHHHccCCCchh-HHHHhcCchHHHHhhhcc-----CCHHHHHHHHHHHHhhhhccchHHHHHHhchHH
Q 006669 447 GSMEARENAAATLFSLSLLDENK-IIIGASGAIPALVDLLQN-----GSTRGRKDAATALFNLCIYMGNKGRAVRAGIIS 520 (636)
Q Consensus 447 ~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~LL~~-----~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~ 520 (636)
.++..++.++.++..++..-... ..-.-...++.|+.+... ..+..+..+++++...+..-....... ..+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 47889999999999987542211 100011233444443221 123344456677776654322222222 24777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh------cCcHHHHH----HHHcCCCHHHHHHHHHHHHHhhc
Q 006669 521 ALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK------ASTIPVLI----VLLRTGLPRNKENAAAILLSLCK 587 (636)
Q Consensus 521 ~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~------~g~i~~Lv----~lL~~~s~~~ke~A~~~L~~L~~ 587 (636)
.+++.|.+.++.+...|+.+|.+++.. .+..+.. ...++.++ .++.............++..+..
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 888888888899999999999999984 3333331 12234433 44444444455555555555544
No 198
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=73.69 E-value=82 Score=32.03 Aligned_cols=237 Identities=16% Similarity=0.121 Sum_probs=162.8
Q ss_pred HHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-ch----HHHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHHc
Q 006669 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE-NN----KGLIMLAGAIPSIVQILRAG--SMEARENAAATLFSL 462 (636)
Q Consensus 390 i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~-~~----k~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~L 462 (636)
+...+.+..|+..|..-+-+.+..++.+..++.... .+ ...+.. - +-++..|-.| +++...++-..|...
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~-peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--Q-QNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--C-THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--C-HHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 445588889999999889999999999998887632 21 122322 2 4444444444 466667777777777
Q ss_pred cCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHh---chHHHHHHHhcCCCHHHHHHHH
Q 006669 463 SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRA---GIISALLKMLTDSRNCMVDEAL 538 (636)
Q Consensus 463 s~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~---g~v~~Lv~lL~~~~~~~~~~Al 538 (636)
...+.....|...+.+..+.+.++.++-++..+|...+..|-..+ .-.+.++.. -.....-.+|.+++=-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 777666777777778888999999999999999999998876554 334445442 3566677888888888999999
Q ss_pred HHHHHHhcChhhHHHHHh----cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccC---hHHHHHHHH--cCChHHHHHhh
Q 006669 539 TILSVLASNPEAKIAIVK----ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD---TENLACISR--LGAVIPLTELT 609 (636)
Q Consensus 539 ~~L~~La~~~~~~~~i~~----~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~---~~~~~~i~~--~G~i~~L~~Ll 609 (636)
..|..|-....+-..+.. ..-+..++.+|++.+..++-.|..+..-...+. +.....+.. ...+.-|-.+.
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~ 310 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 310 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 999999998888777654 234778888999999999999999888777643 233333332 23344444444
Q ss_pred hcC--CHHHHHHHHHHHHHhhc
Q 006669 610 KSG--TERAKRKATSLLEHLRK 629 (636)
Q Consensus 610 ~~g--~~~~k~kA~~lL~~l~~ 629 (636)
.+. ++.-...=..+++.|..
T Consensus 311 ~d~~eDeqF~dEK~~lI~~I~~ 332 (341)
T 1upk_A 311 NDRTEDEQFNDEKTYLVKQIRD 332 (341)
T ss_dssp TTC-CCSHHHHHHHHHHHHHHT
T ss_pred CCCcchhhHHHHHHHHHHHHHh
Confidence 333 23333333345555544
No 199
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=70.52 E-value=1.7e+02 Score=34.33 Aligned_cols=193 Identities=12% Similarity=0.095 Sum_probs=109.6
Q ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHhcc-Chh----hHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhhC
Q 006669 354 IEALVRKLSSR---SVEERRAAVAEIRSLSKR-STD----NRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSIY 424 (636)
Q Consensus 354 i~~Lv~~L~s~---~~~~~~~Al~~L~~La~~-~~~----~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~ 424 (636)
.......|.++ +.++|.-|+..|++..+. +++ .+..+.+ ..+..+...-. .....++.....+|..+...
T Consensus 42 w~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 42 WKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 45555666543 678888888888876542 233 3444432 22333333100 13456777777777777762
Q ss_pred --cchHHHHHHhCChHHHHHHHhcCcH-HHHHHHHHHHHHccCC----C-----c--h-----hHHHHhc---CchHHHH
Q 006669 425 --ENNKGLIMLAGAIPSIVQILRAGSM-EARENAAATLFSLSLL----D-----E--N-----KIIIGAS---GAIPALV 482 (636)
Q Consensus 425 --~~~k~~I~~~G~I~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~----~-----~--~-----~~~i~~~---g~i~~Lv 482 (636)
+.. ..+.++.++..+.+++. ........+|..++.. . + . +..+.+. ..++...
T Consensus 121 ~~p~~-----Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~ 195 (980)
T 3ibv_A 121 LYPSN-----WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVY 195 (980)
T ss_dssp HTTTT-----CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hCccc-----CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHH
Confidence 222 24567778888776543 3445556666644211 0 0 0 2222221 1133344
Q ss_pred hhhcc----CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc---ChhhHHHHH
Q 006669 483 DLLQN----GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS---NPEAKIAIV 555 (636)
Q Consensus 483 ~LL~~----~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~---~~~~~~~i~ 555 (636)
.+|.. .++.....++.+|......- .-..++..+.++.+.++|.+ +.+.+.|+.+|..+.. .++.+..++
T Consensus 196 ~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 196 EMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 44433 57777788888887765432 23455667888899988864 7889999999988876 344444443
No 200
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=69.90 E-value=1.3e+02 Score=35.56 Aligned_cols=241 Identities=12% Similarity=0.091 Sum_probs=120.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHH----HHhcC---CHHHHHHhhcCCChHHHHHHHHHHHHhhh-Cc
Q 006669 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRII----IADAG---AIPVLVNLLTTDDVMTQEHAVTAILNLSI-YE 425 (636)
Q Consensus 354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----i~e~g---~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~ 425 (636)
.-.|++.|..-+.+........+. ..+..|.. +...| ++..+...+.+++....+ |+.+|..+.. -.
T Consensus 313 f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~ 387 (1056)
T 1lsh_A 313 FLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQ 387 (1056)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCC
Confidence 444666666666554444433332 12333333 33345 455556666665544333 3333322211 11
Q ss_pred chHHHHHHhCChHHHHHHHhc----CcHHHHHHHHHHHHHcc----CCCchhHHHHhcCchHHHHhh----hccCCHHHH
Q 006669 426 NNKGLIMLAGAIPSIVQILRA----GSMEARENAAATLFSLS----LLDENKIIIGASGAIPALVDL----LQNGSTRGR 493 (636)
Q Consensus 426 ~~k~~I~~~G~I~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls----~~~~~~~~i~~~g~i~~Lv~L----L~~~~~~~k 493 (636)
.+.+ .+..+..++++ .++.++..+.-++.+|. .....+ ....++.+.++ +..++..-+
T Consensus 388 Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~ 457 (1056)
T 1lsh_A 388 ATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEI 457 (1056)
T ss_dssp CCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHH
T ss_pred CCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHH
Confidence 1222 23444455543 34556666666665553 221111 11234444444 456677778
Q ss_pred HHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHH
Q 006669 494 KDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVL 566 (636)
Q Consensus 494 ~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~l 566 (636)
..++.+|.|+-.. ..++.|..++.. ....++..|+.+|..++..... -+-+.+..+
T Consensus 458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i 520 (1056)
T 1lsh_A 458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPI 520 (1056)
T ss_dssp HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHH
T ss_pred HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHH
Confidence 8899999998642 367777777642 2456777899998888753110 122345566
Q ss_pred Hc--CCCHHHHHHHHHHHHHhhccChHHHHHHHH---c--------CChHHHHHhhhcCCHH---HHHHHHHHHHHh
Q 006669 567 LR--TGLPRNKENAAAILLSLCKRDTENLACISR---L--------GAVIPLTELTKSGTER---AKRKATSLLEHL 627 (636)
Q Consensus 567 L~--~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~---~--------G~i~~L~~Ll~~g~~~---~k~kA~~lL~~l 627 (636)
.. ...+++|..|+.+|..-+ -+......+.. . =+...|..+.++.+|. ...++..+++.+
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm~t~-P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~~a~~~l 596 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFFESK-PSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKML 596 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHHHTC-CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHHHHHTTS
T ss_pred hcCCCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh
Confidence 64 345777777777665322 22222222211 0 1244555555665553 334556666554
No 201
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=69.80 E-value=51 Score=33.12 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=94.5
Q ss_pred hHHHHHHHhcC------cHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669 437 IPSIVQILRAG------SMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCIYMG 508 (636)
Q Consensus 437 I~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~ 508 (636)
+..+..++++| +.+....|...|..+|-+-++-.+|... ..+..|+ .....++..++.|++.|..-..+++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 34455667776 4556788999999999888877777763 4455554 2233467788888888887666654
Q ss_pred hH-HHHHH--hchHHHHHHHhc----C---CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC--CHHHHH
Q 006669 509 NK-GRAVR--AGIISALLKMLT----D---SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG--LPRNKE 576 (636)
Q Consensus 509 n~-~~lv~--~g~v~~Lv~lL~----~---~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke 576 (636)
.. ..+.+ ...|..+..-|. . ....+...-+++|--|..++.. + ...++..|.+++... .+..|.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHH
Confidence 43 33332 334444443332 2 3456677788999988887621 1 134667777777766 789999
Q ss_pred HHHHHHHHhh
Q 006669 577 NAAAILLSLC 586 (636)
Q Consensus 577 ~A~~~L~~L~ 586 (636)
.++.++..+-
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9988887655
No 202
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=69.36 E-value=1.8e+02 Score=34.13 Aligned_cols=208 Identities=12% Similarity=0.044 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC---ChHHHHHHHHHHHHhhh--Ccc----hHHHHHHhC
Q 006669 365 SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD---DVMTQEHAVTAILNLSI--YEN----NKGLIMLAG 435 (636)
Q Consensus 365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~---d~~~~e~Av~aL~nLs~--~~~----~k~~I~~~G 435 (636)
+++.|.+|-..|..+-+. + ++......+|.+. +..++.-|+.+|.+... .++ .+..+ +..
T Consensus 21 d~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-RDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HHH
Confidence 688888888888877653 3 2445566667553 67888888888876554 333 33333 222
Q ss_pred ChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCH-HHHHHHHHHHHhhhhc-------
Q 006669 436 AIPSIVQILR-AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGST-RGRKDAATALFNLCIY------- 506 (636)
Q Consensus 436 ~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~-~~k~~A~~aL~nL~~~------- 506 (636)
.+..+...-. .+..-++...+.+|..+...... -.-.+.++.|+.++..++. ......+++|..++..
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~ 166 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVL 166 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccc
Confidence 2333222000 12355666666676666432100 0122677888888876544 3444555555533211
Q ss_pred c--c--hH-----HHHHHh---chHHHHHHHh----cCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC
Q 006669 507 M--G--NK-----GRAVRA---GIISALLKML----TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG 570 (636)
Q Consensus 507 ~--~--n~-----~~lv~~---g~v~~Lv~lL----~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~ 570 (636)
. . .| ..+.+. -+++....+| ...++.++..++.+|......-+. ..+.....++.+..++..
T Consensus 167 ~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~- 244 (980)
T 3ibv_A 167 KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQI- 244 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTS-
T ss_pred cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCC-
Confidence 0 0 11 122111 1233444444 236778888899999888875432 344556677877777754
Q ss_pred CHHHHHHHHHHHHHhhccC
Q 006669 571 LPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 571 s~~~ke~A~~~L~~L~~~~ 589 (636)
+..++.|+.+|..+....
T Consensus 245 -~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 245 -EELRCAACETMTEIVNKK 262 (980)
T ss_dssp -HHHHHHHHHHHHHHHHSC
T ss_pred -hHHHHHHHHHHHHHHHcC
Confidence 889999999999887654
No 203
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=67.93 E-value=0.46 Score=31.42 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=14.6
Q ss_pred CcccCccchhhccCCeecC
Q 006669 256 ADFLCPISLELMRDPVIVA 274 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~ 274 (636)
+.|.||+|+.-+..|..+-
T Consensus 4 EGFiCP~C~~~l~s~~~L~ 22 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADELF 22 (34)
T ss_dssp EEEECTTTCCEESSHHHHH
T ss_pred cccCCcHHHHHcCCHHHHH
Confidence 3599999999888775543
No 204
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=67.46 E-value=14 Score=33.52 Aligned_cols=73 Identities=5% Similarity=0.047 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|+++++.++..|+..|-.+.+.. ..-...++...++..|++++.. .++.+++.++..+...+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999998864 3344456666778888888865 567888888888877764
No 205
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=66.96 E-value=2.4 Score=35.21 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=28.9
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcCC
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG 291 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~ 291 (636)
...||+|++.+....++|+ ...|..|+.|...+
T Consensus 57 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRPN--TELKEKIQRWLAER 89 (98)
T ss_dssp SCBCTTTCSBCCTTTSEEC--HHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCChhhceEc--HHHHHHHHHHHHHc
Confidence 5689999999988788888 89999999998753
No 206
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=66.17 E-value=2.9 Score=34.54 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=37.8
Q ss_pred CCcccCccchhhccCCeecCCCc------hhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRDPVIVATGQ------TYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv~~~~G~------t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
++.+.||||+++-..-|++-+.. -||..++.+-...| ..=|.+|+++..
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~ 79 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITA 79 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCT
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCH
Confidence 46689999999999999887654 49999998887654 445777777654
No 207
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=65.52 E-value=18 Score=32.36 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC------CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTT------DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s------~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|+++++.++..|+..|-.+.+.. ..-...++...++..|++++.. .+..+++.++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999864 3345566677888889998863 367889999988888775
No 208
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.16 E-value=17 Score=33.35 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC------CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTT------DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s------~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|+++++.++..|+..|-.+.++.. .-...++...++..|++++.. .+..+++.++..+...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999998643 334566667788889998862 357889999999888775
No 209
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=61.60 E-value=17 Score=32.10 Aligned_cols=73 Identities=7% Similarity=0.093 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDN-RIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|+++++.++..|+..|-.+.+..... ...++...++..|+.+++..++.+++..+..+...+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999988764322 3345555677778888877788899999888887764
No 210
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=60.95 E-value=1.4e+02 Score=29.92 Aligned_cols=145 Identities=8% Similarity=0.098 Sum_probs=90.5
Q ss_pred hHHHHhhhccC------CHHHHHHHHHHHHhhhhccchHHHHHH--hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-Ch
Q 006669 478 IPALVDLLQNG------STRGRKDAATALFNLCIYMGNKGRAVR--AGIISALLKMLTDSRNCMVDEALTILSVLAS-NP 548 (636)
Q Consensus 478 i~~Lv~LL~~~------~~~~k~~A~~aL~nL~~~~~n~~~lv~--~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~ 548 (636)
+.....++++| +......|+..|..++..-..=.++++ -..+..|+ .....+..+.+.|..++...-. +|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 44555667776 223445666666666654333344554 33444444 2233667789999999876655 67
Q ss_pred hhHHHHHh--cCcHHHHHHHHcC-------CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC--CHHHH
Q 006669 549 EAKIAIVK--ASTIPVLIVLLRT-------GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG--TERAK 617 (636)
Q Consensus 549 ~~~~~i~~--~g~i~~Lv~lL~~-------~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g--~~~~k 617 (636)
+....|.. ...+..+..-|.. .+......-+++|-.|..++... ...++..|..++..+ .+.+|
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHH
Confidence 77776665 3556666544432 23344445578888888765222 145778888888877 99999
Q ss_pred HHHHHHHHHhh
Q 006669 618 RKATSLLEHLR 628 (636)
Q Consensus 618 ~kA~~lL~~l~ 628 (636)
.|+..++..+-
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999888664
No 211
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=59.29 E-value=58 Score=33.41 Aligned_cols=127 Identities=11% Similarity=0.130 Sum_probs=92.6
Q ss_pred HHHhhhhccch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc-CCCHHHHH
Q 006669 499 ALFNLCIYMGN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR-TGLPRNKE 576 (636)
Q Consensus 499 aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke 576 (636)
-|.||..+++| ..-++++++|..+...+.-++.++....+..|...+....-... --...+|-++..+. ++.+.+.=
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccCCCcceEE
Confidence 35566666655 56789999999999999889999999999999988874332111 01246788887776 46677777
Q ss_pred HHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC-------CHHHHHHHHHHHHH
Q 006669 577 NAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG-------TERAKRKATSLLEH 626 (636)
Q Consensus 577 ~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g-------~~~~k~kA~~lL~~ 626 (636)
.....|.|...+.......++..|+++.|...+... +..-|..|..++.+
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 778999999998878888889999999999886532 22334555555543
No 212
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=58.40 E-value=13 Score=32.81 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=53.9
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHH-HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTEN-LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~-~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 628 (636)
++..|..-|.++++..+..|+.+|-.+..+.+.. ..++.....+..|..++...++.++++...++..-.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4556777788888999999999888888876654 445655667777888887788999999998887654
No 213
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=58.25 E-value=1.3e+02 Score=36.12 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=116.8
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCChHHHHHHHHHHHHhhh------
Q 006669 354 IEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL--TTDDVMTQEHAVTAILNLSI------ 423 (636)
Q Consensus 354 i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL--~s~d~~~~e~Av~aL~nLs~------ 423 (636)
+..++..+-++ +.+.+.+|-..|..+.+.. .+...+...| .+.+..++..|...|.|...
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 33344333343 6667888888887775432 1333344433 34577888899988988753
Q ss_pred CcchHHHHHHhCChHHHHHHHhc---CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHH
Q 006669 424 YENNKGLIMLAGAIPSIVQILRA---GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL 500 (636)
Q Consensus 424 ~~~~k~~I~~~G~I~~Lv~lL~~---~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL 500 (636)
.++.+..|. ...+..+...-.. ....++...+.++..++..+--. .-.+.++.|+.++.. ++..+..++.+|
T Consensus 83 ~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 83 SRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp CHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 223344332 2223332221100 24666777777777765332110 113678888888876 555677788888
Q ss_pred Hhhhhc---c----chHHH-----HHH--hchHHHHHHHhcC-------------------CCHHHHHHHHHHHHHHhcC
Q 006669 501 FNLCIY---M----GNKGR-----AVR--AGIISALLKMLTD-------------------SRNCMVDEALTILSVLASN 547 (636)
Q Consensus 501 ~nL~~~---~----~n~~~-----lv~--~g~v~~Lv~lL~~-------------------~~~~~~~~Al~~L~~La~~ 547 (636)
..|+.. . ..|.. +.+ ..+++.+.+++.+ .+..++..++.++.+....
T Consensus 158 ~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 158 LRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 877532 1 11221 111 1233444444432 1223445556666554443
Q ss_pred hhhHHHHHhcC--cHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669 548 PEAKIAIVKAS--TIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 548 ~~~~~~i~~~g--~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 589 (636)
... ..+.+.. .++.+..++. ++..+..|+.+|..++...
T Consensus 238 i~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 238 VSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp SCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred cCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 222 2233332 5666665554 4678899999999988754
No 214
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=57.64 E-value=3.4 Score=33.18 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=27.9
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcC
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDC 290 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~ 290 (636)
.+.||+|++.+....++++ ...|..|+.|...
T Consensus 48 ~~~cP~~~~~l~~~~l~pn--~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 48 SPTDPFNRQMLTESMLEPV--PELKEQIQAWMRE 79 (85)
T ss_dssp CSBCTTTCCBCCGGGCEEC--HHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCChHhcchH--HHHHHHHHHHHHH
Confidence 4789999999987788888 8899999999864
No 215
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.27 E-value=17 Score=32.97 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=53.9
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~ 628 (636)
++..|.+-|.++++..+-.|+.+|-.+..+.+. ...++.....+..|+.++.. .++.+++|+..++..-.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 455677778888999999999999888887654 44466666778888888865 56899999988877554
No 216
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=56.50 E-value=64 Score=31.15 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=89.2
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHH-HHhcCcHHHHHHHHHHHHHccC-CCchhHHHHhcCch
Q 006669 401 NLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQ-ILRAGSMEARENAAATLFSLSL-LDENKIIIGASGAI 478 (636)
Q Consensus 401 ~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~g~i 478 (636)
.+..++.-+++..|+.+|..+ . .. ...++.+.. +-...+..+++.++.++..++. .+. ...+
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-------e~~l 141 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-------KKAL 141 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-------TTTH
T ss_pred HHHhCcchHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-------HHHH
Confidence 344555567888888887766 2 11 113444444 3334679999999999888763 211 1266
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHh
Q 006669 479 PALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVK 556 (636)
Q Consensus 479 ~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~ 556 (636)
+.+....++.+..++..|...+.--+.... .+..-.-+++.|-.+..+++.-++......|..++. +|+-...+++
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~--~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNRPY--FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGSTT--TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhccch--hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 788888999999999998887754332211 011112256666666677888888888899999998 5665544443
No 217
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=56.43 E-value=1.9e+02 Score=34.21 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=96.6
Q ss_pred HHHHHHhhcC----CChHHHHHHHHHHHHhhh----CcchHHHHHHhCChHHHHHH----HhcCcHHHHHHHHHHHHHcc
Q 006669 396 IPVLVNLLTT----DDVMTQEHAVTAILNLSI----YENNKGLIMLAGAIPSIVQI----LRAGSMEARENAAATLFSLS 463 (636)
Q Consensus 396 i~~Lv~lL~s----~d~~~~e~Av~aL~nLs~----~~~~k~~I~~~G~I~~Lv~l----L~~~~~e~~~~Aa~~L~~Ls 463 (636)
+..+..++.+ .++.+++.++-++.+|.. +...+ ....++.+.+. +..++.+-+..++.+|.|+-
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 3344455543 234455556666655543 11110 11224444444 45567777888888888885
Q ss_pred CCCchhHHHHhcCchHHHHhhhcc-------CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHH
Q 006669 464 LLDENKIIIGASGAIPALVDLLQN-------GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMV 534 (636)
Q Consensus 464 ~~~~~~~~i~~~g~i~~Lv~LL~~-------~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~ 534 (636)
.. ..++.|..++.. .+.+++..|+.||.++....+. -+-+.|++++.+ .+.+++
T Consensus 469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i~~n~~e~~EvR 531 (1056)
T 1lsh_A 469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPIFLNVAIKSELR 531 (1056)
T ss_dssp CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHHHHCTTSCHHHH
T ss_pred Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHHhcCCCCChHHH
Confidence 42 356666666642 2467889999999999754321 133456777744 677777
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhccC
Q 006669 535 DEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAILLSLCKRD 589 (636)
Q Consensus 535 ~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~ 589 (636)
-.|+.+|. -.+|.. ..+..+...+.. .+..+.......|.+++...
T Consensus 532 iaA~~~Lm--~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 532 IRSCIVFF--ESKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHH--HTCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH--HHCcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 66666664 223321 235566666654 56777888888888888765
No 218
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=54.91 E-value=33 Score=30.64 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcC------CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDN-RIIIADAGAIPVLVNLLTT------DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~e~g~i~~Lv~lL~s------~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|.++++.++..|+..|-.+.+..... ...|+...++..|++++.. .+..+++..+.++...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998865433 4556666788889998863 467889999998888775
No 219
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=54.40 E-value=20 Score=31.97 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=55.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKS------GTERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~------g~~~~k~kA~~lL~~l~ 628 (636)
++..|..-|.++++..+..|+.+|-.+..+.+. ...++.....+..|+.++.. .++.+++|+..++..-.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456677778889999999999999998888654 55677777788889988864 36789999888777543
No 220
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=53.19 E-value=3.1 Score=26.13 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=12.7
Q ss_pred CCcccCccchhhccCCe
Q 006669 255 PADFLCPISLELMRDPV 271 (636)
Q Consensus 255 p~~f~CPis~~~m~dPv 271 (636)
|..|.||+|+..|-|+-
T Consensus 1 ~~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCCEECTTSSCEESSHH
T ss_pred CCcccCccccccCcChH
Confidence 45688888888887753
No 221
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=50.88 E-value=41 Score=29.72 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=50.7
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHH-HHHHc-CChHHHHHhhhc-----CC---HHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA-CISRL-GAVIPLTELTKS-----GT---ERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~-~i~~~-G~i~~L~~Ll~~-----g~---~~~k~kA~~lL~~l~ 628 (636)
+...|.+-|...++..+-+|+.+|..||.++.+... .+.+. ..|..|..+--. |. ..+|.+|..++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 356777777888899999999999999987765544 44432 223333333211 21 578999999999997
Q ss_pred cccc
Q 006669 629 KLPQ 632 (636)
Q Consensus 629 ~~~~ 632 (636)
....
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 6544
No 222
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=50.39 E-value=6.8 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.6
Q ss_pred cccCccchhhccCCeecCCCchhhhHHHHHHHcCC
Q 006669 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG 291 (636)
Q Consensus 257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~ 291 (636)
...||+|...+....+.++ ...+..|++|...+
T Consensus 43 ~~~CP~C~~~~~~~~l~~n--~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 43 HKTCPKSQETLLHAGLTPN--YVLKSLIALWCESN 75 (78)
T ss_dssp CCBCTTTCCBCSSCCCEEC--TTTHHHHHHHHHHS
T ss_pred cCCCCCCcCCCChhhCccC--HHHHHHHHHHHHHc
Confidence 5789999999977777777 78899999998754
No 223
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.32 E-value=19 Score=32.98 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=55.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKS------GTERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~------g~~~~k~kA~~lL~~l~ 628 (636)
++..|.+-|.++++..+-.|+.+|-.+..+.+. ...++.....+..|+.++.. .+..+++|+..++..-.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 356677788889999999999999999888764 44467677788889988852 35789999888887654
No 224
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=45.81 E-value=31 Score=30.79 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=54.7
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHH-HHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTEN-LACISRLGAVIPLTELTKS------GTERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~-~~~i~~~G~i~~L~~Ll~~------g~~~~k~kA~~lL~~l~ 628 (636)
++..|..-|.+.++..+..|+.+|-.+..+.+.. ..++.....+..|+.++.. .++.+++|...++..-.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4567777788889999999999999888877654 4566666778888888853 56889999888887654
No 225
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=44.41 E-value=10 Score=28.27 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCCCCCCCcccccCCcc-cc--hhHHHHHHHHHhhccccCCCC
Q 006669 292 NVTCPKTQQKLEHLTLT-PN--YVLRSLISQWCTMHNIEQPIG 331 (636)
Q Consensus 292 ~~~cP~~~~~l~~~~l~-pn--~~lr~lI~~w~~~n~~~~~~~ 331 (636)
+..||+|++.+.+.... +. ..-|..|++|...++. .|..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~-cP~t 44 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPIT 44 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB-CTTT
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCC-CcCC
Confidence 46799999999887665 32 3458999999998875 4443
No 226
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.40 E-value=29 Score=33.86 Aligned_cols=127 Identities=8% Similarity=0.046 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhCcchHHHHHHhCChHHHHH-HHhcCcHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhc--
Q 006669 411 QEHAVTAILNLSIYENNKGLIMLAGAIPSIVQ-ILRAGSMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQ-- 486 (636)
Q Consensus 411 ~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~-- 486 (636)
+--++.+++-+..++... +.+..++. .+.++++..+.-+++++.|+-..+. .+..+........+++.+.
T Consensus 71 ~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 144 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHH
Confidence 344566666555544332 22222222 2234567788899999999988877 4555544333444444432
Q ss_pred --c----CCHHHHHHHHHHHHhhhhccch-HHHHHHhchHHHHHHHhcC---------CCHHHHHHHHHHHHHHhc
Q 006669 487 --N----GSTRGRKDAATALFNLCIYMGN-KGRAVRAGIISALLKMLTD---------SRNCMVDEALTILSVLAS 546 (636)
Q Consensus 487 --~----~~~~~k~~A~~aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La~ 546 (636)
+ .+...+..+++.++|++...-+ +. +......+++.+.. .+.+....++-+|.+|..
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1 2456777888999999864211 11 12233445554432 366777888888888875
No 227
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=44.26 E-value=6.6 Score=36.44 Aligned_cols=31 Identities=10% Similarity=0.230 Sum_probs=27.5
Q ss_pred cCccchhhccCCeecCCCchhhhHHHHHHHcCC
Q 006669 259 LCPISLELMRDPVIVATGQTYERSYIQRWIDCG 291 (636)
Q Consensus 259 ~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~ 291 (636)
.||+|++.+....++|+ ...|..|+.|...+
T Consensus 143 tcP~t~~~l~~~~L~pN--~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 143 FDPVTRSPLTQDQLIPN--LAMKEVIDAFIQEN 173 (179)
T ss_dssp BCTTTCCBCCGGGCEEC--HHHHHHHHHHHHHC
T ss_pred CCCCCcCCCChhhCcch--HHHHHHHHHHHHHC
Confidence 69999999987788899 89999999998754
No 228
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.38 E-value=44 Score=31.97 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|.++++.++..|+..|-.+.++... -...|+...++..|+.++.. .+..+++.++.++...+.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999875332 24455556677778777754 567889999988888764
No 229
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.48 E-value=14 Score=30.02 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=27.1
Q ss_pred CcccCccchhh---ccCCeecCCCchhhhHHHHHHHcCC
Q 006669 256 ADFLCPISLEL---MRDPVIVATGQTYERSYIQRWIDCG 291 (636)
Q Consensus 256 ~~f~CPis~~~---m~dPv~~~~G~t~~r~~I~~w~~~~ 291 (636)
..+.||+|+.- +..+.++|+ ...+..|+.|....
T Consensus 47 ~~~~CP~tgc~~~~l~~~~L~pn--~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 47 KKAYCPQIGCSHTDIRKSDLIQD--EALRRAIENHNKKR 83 (94)
T ss_dssp CCBCCCSTTCCCCCBCGGGEEEC--HHHHHHHHHHHTTC
T ss_pred CCCCCCcCcCcccccCHhhCcCC--HHHHHHHHHHHHHh
Confidence 35789995543 777788898 89999999998754
No 230
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.02 E-value=51 Score=31.24 Aligned_cols=73 Identities=10% Similarity=0.097 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|+++++.++..|+..|-.+.+.... -...|+....+..|+.++.. .+..+++.++..+...+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999886432 34556666677888887764 457788888888777664
No 231
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=39.91 E-value=72 Score=28.54 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHH-HHHhhcC---CChHHHHHHHHHHHHhhh
Q 006669 351 VVAIEALVRKLS-SRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPV-LVNLLTT---DDVMTQEHAVTAILNLSI 423 (636)
Q Consensus 351 ~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~-Lv~lL~s---~d~~~~e~Av~aL~nLs~ 423 (636)
+.++..|.+.|+ ++++.++..|+..|-.+.++. ..-...++....+.. |++++.. .+..+++.++..+...+.
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 467899999998 589999999999999998865 444555666677877 7888742 235788888888877764
No 232
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=38.55 E-value=8.9 Score=27.10 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=11.4
Q ss_pred CCCCcccCccchh
Q 006669 253 IIPADFLCPISLE 265 (636)
Q Consensus 253 ~~p~~f~CPis~~ 265 (636)
.+|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5799999999975
No 233
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=38.34 E-value=11 Score=36.82 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=27.2
Q ss_pred cCccchhhccCCeecCCCchhhhHHHHHHHcCC
Q 006669 259 LCPISLELMRDPVIVATGQTYERSYIQRWIDCG 291 (636)
Q Consensus 259 ~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~ 291 (636)
.||+|.+.++...++|+ ...|..|++|+..+
T Consensus 245 ~cP~~~~~~~~~~l~~n--~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 245 FNPVTRSPLTQEQLIPN--LAMKEVIDAFISEN 275 (281)
T ss_dssp SCTTTCCCCCGGGCEEC--HHHHHHHHHHHTTC
T ss_pred CCcCCCCCCchhcCccc--HHHHHHHHHHHHHC
Confidence 49999999987778888 88999999999754
No 234
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=34.17 E-value=11 Score=27.52 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.0
Q ss_pred CCCCcccCccchhh
Q 006669 253 IIPADFLCPISLEL 266 (636)
Q Consensus 253 ~~p~~f~CPis~~~ 266 (636)
.+|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 67999999999763
No 235
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=33.63 E-value=13 Score=26.92 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=11.8
Q ss_pred CCCCcccCccchhh
Q 006669 253 IIPADFLCPISLEL 266 (636)
Q Consensus 253 ~~p~~f~CPis~~~ 266 (636)
.+|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 57999999999753
No 236
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.72 E-value=60 Score=30.73 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=53.3
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~ 628 (636)
++..|..-|.+.++..+..|+.+|-.+..+.+. ...++.....+..|..++.+ .+..+++++..++..-.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 355667778888999999999999999988765 44566666678888888765 45788998888776554
No 237
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=31.18 E-value=3.1e+02 Score=28.35 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=0.0
Q ss_pred CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHH--------hcC
Q 006669 476 GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVL--------ASN 547 (636)
Q Consensus 476 g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L--------a~~ 547 (636)
++++.++++-.+.+.++++..+..|...+..+.....- +++.|..+|.+.+..+...++.+..++ +.+
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~----~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~ 138 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK----LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKS 138 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred hhhH---HHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669 548 PEAK---IAIVK--ASTIPVLIVLLRTGLPRNKENAAAILLSL 585 (636)
Q Consensus 548 ~~~~---~~i~~--~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L 585 (636)
+... +..++ ...-..++.++.+++..+|-+|+..+-.+
T Consensus 139 ~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 139 RVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
No 238
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=30.68 E-value=2.9e+02 Score=28.96 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhhCcchHHHHHHhCChHHHH-HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhcc-
Q 006669 411 QEHAVTAILNLSIYENNKGLIMLAGAIPSIV-QILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQN- 487 (636)
Q Consensus 411 ~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~- 487 (636)
+--++.+|+-+..++.... .|..++ ..+.+..+..+.-+++++.|+-........+... .....+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 4446666666655443221 222222 2233446788889999999998887754444433 334555555421
Q ss_pred -------CCHHHHHHHHHHHHhhhhccch-HHHHHHhchHHHHHHHhc---------CCCHHHHHHHHHHHHHHhcC
Q 006669 488 -------GSTRGRKDAATALFNLCIYMGN-KGRAVRAGIISALLKMLT---------DSRNCMVDEALTILSVLASN 547 (636)
Q Consensus 488 -------~~~~~k~~A~~aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~---------~~~~~~~~~Al~~L~~La~~ 547 (636)
.+...+..+++.++|++...-. +. +...+..+++.+. ..+.+....++-+|.+|...
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1356778888999999864311 11 0223344555554 24778888899999998863
No 239
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=29.68 E-value=16 Score=29.03 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=12.0
Q ss_pred CCCCcccCccchhh
Q 006669 253 IIPADFLCPISLEL 266 (636)
Q Consensus 253 ~~p~~f~CPis~~~ 266 (636)
.+|+++.||+|+.-
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 57999999999764
No 240
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.30 E-value=62 Score=30.88 Aligned_cols=69 Identities=6% Similarity=0.081 Sum_probs=52.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhhC--cchHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHcc
Q 006669 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIY--ENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLS 463 (636)
Q Consensus 395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~--~~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls 463 (636)
++..|.+-|.+.++.++..|+.+|-.+.++ +.....|....++..|+.+++.. ++++++..+..+...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 355677778889999999999999888873 33456666667777888888654 5788888888887764
No 241
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=29.27 E-value=15 Score=26.56 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=11.8
Q ss_pred CCCCcccCccchhh
Q 006669 253 IIPADFLCPISLEL 266 (636)
Q Consensus 253 ~~p~~f~CPis~~~ 266 (636)
.+|+++.||+|+.-
T Consensus 31 ~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 31 DLPDDWVCPLCGAP 44 (52)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCCCCCCC
Confidence 57999999999753
No 242
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=28.80 E-value=16 Score=26.86 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=11.8
Q ss_pred CCCCcccCccchhh
Q 006669 253 IIPADFLCPISLEL 266 (636)
Q Consensus 253 ~~p~~f~CPis~~~ 266 (636)
.+|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 57999999999763
No 243
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=26.76 E-value=8.4e+02 Score=28.74 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=107.3
Q ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhc-----cchH
Q 006669 437 IPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIY-----MGNK 510 (636)
Q Consensus 437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~-----~~n~ 510 (636)
+..++..+.+++.+.+..|-..|..+-..+ ++...+..+|..+ ++.++..|+..|.+.... ++..
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 445555556677778888888888775544 3455555666543 788999999999987653 2333
Q ss_pred HHHHHhchHHHHHHHhcC-----CCHHHHHHHHHHHHHHhc--ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669 511 GRAVRAGIISALLKMLTD-----SRNCMVDEALTILSVLAS--NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583 (636)
Q Consensus 511 ~~lv~~g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~--~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~ 583 (636)
...++..++..+.+.-.+ .++.+......+++.++. .|+. -.+.++.++..+.. ++...+....+|.
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~-~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT-SESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 444555566666665433 245666667777777765 3332 23567777777753 4566778888888
Q ss_pred Hhhcc--C-------hHHH---HHHHHcCChHHHH----Hhhh-cCCHHHHHHHHHHHHHhhcccc
Q 006669 584 SLCKR--D-------TENL---ACISRLGAVIPLT----ELTK-SGTERAKRKATSLLEHLRKLPQ 632 (636)
Q Consensus 584 ~L~~~--~-------~~~~---~~i~~~G~i~~L~----~Ll~-~g~~~~k~kA~~lL~~l~~~~~ 632 (636)
.|+.. + .... ...+... .+.++ ..+. .+++.....+..+|+.+..|-.
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~ 239 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP 239 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 87754 0 1111 1122222 33333 3343 3567777777788887777653
No 244
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.41 E-value=66 Score=31.28 Aligned_cols=101 Identities=7% Similarity=-0.000 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHHHHhhhhccc-hHHHHHHhchHHHHHHHhcC--------CCHHHHHHHHHHHHHHhcChhh-HHHHHh
Q 006669 487 NGSTRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKMLTD--------SRNCMVDEALTILSVLASNPEA-KIAIVK 556 (636)
Q Consensus 487 ~~~~~~k~~A~~aL~nL~~~~~-n~~~lv~~g~v~~Lv~lL~~--------~~~~~~~~Al~~L~~La~~~~~-~~~i~~ 556 (636)
.+++..+..+++++.|+-.++. ++..+........+++.+.+ .+..++-.+...+.|++..-.. +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4567889999999999988887 67766655455556665532 1445666677788888862110 10 1
Q ss_pred cCcHHHHHHHHcC---------CCHHHHHHHHHHHHHhhccCh
Q 006669 557 ASTIPVLIVLLRT---------GLPRNKENAAAILLSLCKRDT 590 (636)
Q Consensus 557 ~g~i~~Lv~lL~~---------~s~~~ke~A~~~L~~L~~~~~ 590 (636)
......+++.+.. .+++..-.++-+|.+|...++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2345566666653 134444555566666664443
No 245
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=26.35 E-value=18 Score=27.92 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=11.9
Q ss_pred CCCCcccCccchhh
Q 006669 253 IIPADFLCPISLEL 266 (636)
Q Consensus 253 ~~p~~f~CPis~~~ 266 (636)
.+|+++.||+|+.-
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 57999999999764
No 246
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.89 E-value=1.1e+02 Score=27.25 Aligned_cols=70 Identities=10% Similarity=-0.025 Sum_probs=50.4
Q ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHhhccChH-HHHHHHHcCChHH-HHHhhhc---CCHHHHHHHHHHHHHhh
Q 006669 559 TIPVLIVLLR-TGLPRNKENAAAILLSLCKRDTE-NLACISRLGAVIP-LTELTKS---GTERAKRKATSLLEHLR 628 (636)
Q Consensus 559 ~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~-~~~~i~~~G~i~~-L~~Ll~~---g~~~~k~kA~~lL~~l~ 628 (636)
++..|.+-|. ..++..+-.|+.+|-.+..+.+. ...++.....+.. |+.++.. ....+++|+..++..-.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3556777776 47888999999999988888654 4445666677777 7777742 23588999888877554
No 247
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=23.59 E-value=22 Score=28.66 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.9
Q ss_pred CCCCcccCccchhh
Q 006669 253 IIPADFLCPISLEL 266 (636)
Q Consensus 253 ~~p~~f~CPis~~~ 266 (636)
.+|+++.||+|+.-
T Consensus 64 dlPddW~CPvCga~ 77 (87)
T 1s24_A 64 DIPDDWCCPDCGAT 77 (87)
T ss_dssp GCCTTCCCSSSCCC
T ss_pred HCCCCCCCCCCCCC
Confidence 67999999999753
No 248
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.78 E-value=39 Score=28.67 Aligned_cols=47 Identities=9% Similarity=0.170 Sum_probs=38.1
Q ss_pred CCcccCccchhhccC-CeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 255 PADFLCPISLELMRD-PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 255 p~~f~CPis~~~m~d-Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
|+-|.|..|...+.+ +.....|..||+.+..+-+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 567999999998866 5668889999999876654 4679999988864
No 249
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=22.54 E-value=75 Score=25.63 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=34.6
Q ss_pred ccCccchhhc---cC-CeecCC---CchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669 258 FLCPISLELM---RD-PVIVAT---GQTYERSYIQRWIDCGNVTCPKTQQKLE 303 (636)
Q Consensus 258 f~CPis~~~m---~d-Pv~~~~---G~t~~r~~I~~w~~~~~~~cP~~~~~l~ 303 (636)
-.|.||++-. .| -+++.| +-..||.|.+.=.++|+..||.|+.++.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4699998754 11 144544 5578999999888899999999988775
No 250
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=22.36 E-value=4e+02 Score=23.42 Aligned_cols=80 Identities=6% Similarity=0.048 Sum_probs=59.7
Q ss_pred cChhhHHHHHhcCcHHHHHHHHcC---C---CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc--CCHHHH
Q 006669 546 SNPEAKIAIVKASTIPVLIVLLRT---G---LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS--GTERAK 617 (636)
Q Consensus 546 ~~~~~~~~i~~~g~i~~Lv~lL~~---~---s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~--g~~~~k 617 (636)
....-+..+++.|++..+-..|.- + +..+++....+|..+= -....+.+.|.-..++.+.++ .++..|
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk 124 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVR 124 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHH
Confidence 345567888999999999888873 2 4678888888888774 235667777777777766655 588999
Q ss_pred HHHHHHHHHhhc
Q 006669 618 RKATSLLEHLRK 629 (636)
Q Consensus 618 ~kA~~lL~~l~~ 629 (636)
+.|..++..-.|
T Consensus 125 ~la~~Li~~WsR 136 (145)
T 2xpp_A 125 ASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876544
No 251
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.18 E-value=1.1e+02 Score=31.46 Aligned_cols=127 Identities=9% Similarity=0.029 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhhCcchHHHHHHhCChHHHH-HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhh---
Q 006669 411 QEHAVTAILNLSIYENNKGLIMLAGAIPSIV-QILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLL--- 485 (636)
Q Consensus 411 ~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL--- 485 (636)
+--++.+|+-+..++... +.+..++ ..+.+..+..+.-+++++.|+-........+... .....+++.+
T Consensus 180 ~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 344566666555544322 2222233 2233456788889999999998877744444432 2233444443
Q ss_pred -cc----CCHHHHHHHHHHHHhhhhccch-HHHHHHhchHHHHHHHhc---------CCCHHHHHHHHHHHHHHhc
Q 006669 486 -QN----GSTRGRKDAATALFNLCIYMGN-KGRAVRAGIISALLKMLT---------DSRNCMVDEALTILSVLAS 546 (636)
Q Consensus 486 -~~----~~~~~k~~A~~aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~---------~~~~~~~~~Al~~L~~La~ 546 (636)
.+ .+...+..+++.++|++..... +. +...+..+++.+. ..+.+....++-+|.+|..
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 21 1456778888999999864311 11 0223344555554 2477888888999998885
No 252
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=21.04 E-value=89 Score=24.61 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=28.9
Q ss_pred CcccCccchhhccCCeecCC----Cchhh----hHHHHHHHcCCCCCCCC
Q 006669 256 ADFLCPISLELMRDPVIVAT----GQTYE----RSYIQRWIDCGNVTCPK 297 (636)
Q Consensus 256 ~~f~CPis~~~m~dPv~~~~----G~t~~----r~~I~~w~~~~~~~cP~ 297 (636)
.-++|-+|.+-+.|.-++.| +|.|| |.+|++.-..+.-+||.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 45899999999998665544 67776 55555544445567874
No 253
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=20.75 E-value=69 Score=24.08 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=28.2
Q ss_pred hhHHHHHHHH-hcCCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHHHhcccC
Q 006669 50 LLKHLLEEIR-DSGPLDVLPSESSSSTTSLLWWNDLVVALQASKRLLAVACCY 101 (636)
Q Consensus 50 ll~~l~eel~-~~~~~~~~~~~~~~~~~~~~~l~eL~~al~~ak~Ll~~~~c~ 101 (636)
-|..++||+. |-.|+ + .....+.+.|..-+..|+.|+.. |.
T Consensus 15 ~LL~VIeEmgkdIrpT--------Y-aGsk~~~ERLkR~I~hAr~LVrE--Cl 56 (65)
T 2kw6_A 15 ELLAIIEELGKEIRPT--------Y-AGSKSAMERLKRGIIHARGLVRE--CL 56 (65)
T ss_dssp HHHHHHHHHTTTHHHH--------H-TTCHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHhcccchh--------h-ccCcchHHHHHHHHHHHHHHHHH--HH
Confidence 3556778885 32210 0 13355788999999999999999 63
No 254
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.64 E-value=47 Score=28.15 Aligned_cols=51 Identities=10% Similarity=-0.012 Sum_probs=39.2
Q ss_pred CCcccCccchhhccC---CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669 255 PADFLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT 306 (636)
Q Consensus 255 p~~f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 306 (636)
|+-|.|..|...+.| +.....|..||+.+..+-|.. ...|-.|++++....
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 456999999999963 567888999999999887742 227888888776543
No 255
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=20.41 E-value=1.3e+02 Score=24.59 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=56.2
Q ss_pred CccchhhHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCChhhhhhHH-HHHHHHHHHHHHHHhcccCCCCcchhhchh
Q 006669 34 RGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWN-DLVVALQASKRLLAVACCYSSGDSSDEAAE 112 (636)
Q Consensus 34 ~~~~rk~~~~l~rr~~ll~~l~eel~~~~~~~~~~~~~~~~~~~~~~l~-eL~~al~~ak~Ll~~~~c~~~Sk~~l~~~~ 112 (636)
+...++|-..+++++.-+.++|+.|...+ -+ ...- .... .-..--++|+.|+.. +-.+++
T Consensus 12 ~~~L~~~R~~LV~~l~~V~~lLD~LL~~~--------VL-~~ee-~~I~~~~~T~~~kaR~Lld~---------v~~KG~ 72 (98)
T 2nz7_A 12 IQLLKSNRELLVTHIRNTQCLVDNLLKND--------YF-SAED-AEIVCACPTQPDKVRKILDL---------VQSKGE 72 (98)
T ss_dssp HHHHHHTHHHHHHHCCCCHHHHHHHHHTT--------SS-CHHH-HHHHHTCCSHHHHHHHHHHH---------HHHHCH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHcC--------CC-CHHH-HHHHccCCCcHHHHHHHHHH---------HHHHhH
Confidence 34668888889999999999999999664 11 2222 1111 123346889999988 345678
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 006669 113 KISFQFQCVMWKLEKALGN 131 (636)
Q Consensus 113 ~v~~~~~~~~~~~~~~L~~ 131 (636)
.....|.....+..++|-.
T Consensus 73 ~A~~~F~~~L~e~~~~~~~ 91 (98)
T 2nz7_A 73 EVSEFFLYLLQQLADAYVD 91 (98)
T ss_dssp HHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHHhCccchh
Confidence 8888899999999988743
No 256
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.41 E-value=30 Score=28.41 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=25.6
Q ss_pred ccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669 258 FLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304 (636)
Q Consensus 258 f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 304 (636)
..||.|.+.|. + ..|+.+|-.|=+. |. -...||.|+++|.-
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~-f~-~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEF-IE-MKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCE-EE-EEEECTTTCSBCEE
T ss_pred ccCccCCCcce-e---cCCEEECccccch-hh-ccccCcchhhHHHH
Confidence 68999998874 2 2344446665221 11 12469999998864
Done!