Query 006671
Match_columns 636
No_of_seqs 334 out of 1720
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00079 NADP-specific glutama 100.0 6E-139 1E-143 1127.8 52.6 443 190-636 11-454 (454)
2 PRK14030 glutamate dehydrogena 100.0 6E-133 1E-137 1082.2 50.8 438 193-636 3-445 (445)
3 PRK14031 glutamate dehydrogena 100.0 6E-130 1E-134 1059.3 51.1 437 193-636 3-444 (444)
4 COG0334 GdhA Glutamate dehydro 100.0 4E-127 9E-132 1018.3 43.8 410 207-636 1-411 (411)
5 PRK09414 glutamate dehydrogena 100.0 5E-124 1E-128 1014.5 50.9 438 191-636 5-445 (445)
6 PLN02477 glutamate dehydrogena 100.0 3E-120 5E-125 978.5 47.7 408 209-635 2-409 (410)
7 KOG2250 Glutamate/leucine/phen 100.0 9E-116 2E-120 936.7 39.5 461 157-635 1-483 (514)
8 PTZ00324 glutamate dehydrogena 100.0 6.2E-73 1.3E-77 652.0 37.7 367 233-623 464-911 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 4.6E-72 1E-76 570.8 28.9 253 379-635 1-254 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 8.4E-62 1.8E-66 493.7 17.0 240 386-634 1-244 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 9.8E-58 2.1E-62 459.4 24.7 227 386-628 1-227 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 3.1E-57 6.6E-62 453.1 24.1 217 394-627 1-217 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 2E-44 4.2E-49 335.5 13.2 131 241-371 1-131 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 1.1E-40 2.5E-45 329.2 23.1 195 392-627 2-199 (200)
15 smart00839 ELFV_dehydrog Gluta 100.0 9.4E-29 2E-33 221.2 11.0 100 499-604 3-102 (102)
16 COG2902 NAD-specific glutamate 99.9 7.2E-24 1.6E-28 247.9 20.1 307 241-569 774-1160(1592)
17 PF05088 Bac_GDH: Bacterial NA 99.9 5.8E-22 1.3E-26 239.9 22.5 352 261-635 723-1169(1528)
18 PRK08374 homoserine dehydrogen 99.1 3.4E-10 7.4E-15 120.9 9.3 182 417-610 3-209 (336)
19 PRK06392 homoserine dehydrogen 99.0 8.1E-10 1.8E-14 117.7 10.0 179 418-610 2-203 (326)
20 PRK06270 homoserine dehydrogen 98.6 2.4E-07 5.2E-12 99.2 11.2 182 417-610 3-213 (341)
21 cd05191 NAD_bind_amino_acid_DH 98.5 5.8E-07 1.3E-11 77.6 10.2 55 394-448 1-55 (86)
22 PLN02700 homoserine dehydrogen 98.2 1.5E-05 3.3E-10 86.8 12.4 187 417-610 4-227 (377)
23 PRK06813 homoserine dehydrogen 98.1 1.4E-05 3.1E-10 86.3 9.4 180 417-611 3-211 (346)
24 PRK09436 thrA bifunctional asp 97.8 9.1E-05 2E-09 88.1 11.6 192 402-610 451-669 (819)
25 PF00670 AdoHcyase_NAD: S-aden 97.5 0.00048 1E-08 67.3 9.1 102 397-526 3-106 (162)
26 cd01065 NAD_bind_Shikimate_DH 97.5 0.0034 7.4E-08 58.5 14.4 130 402-553 5-138 (155)
27 TIGR02853 spore_dpaA dipicolin 97.4 0.0012 2.6E-08 69.6 11.6 132 392-556 130-269 (287)
28 PRK09466 metL bifunctional asp 97.3 0.00092 2E-08 79.6 10.2 189 402-610 444-663 (810)
29 PRK08306 dipicolinate synthase 97.2 0.0023 5E-08 67.6 10.3 127 392-551 131-260 (296)
30 cd05311 NAD_bind_2_malic_enz N 97.0 0.01 2.2E-07 60.5 13.4 140 395-552 4-149 (226)
31 PTZ00317 NADP-dependent malic 97.0 0.21 4.6E-06 57.4 24.1 182 323-532 221-417 (559)
32 COG0460 ThrA Homoserine dehydr 96.9 0.004 8.6E-08 67.2 9.3 172 416-611 3-202 (333)
33 PRK12861 malic enzyme; Reviewe 96.8 0.026 5.6E-07 67.0 16.1 173 328-538 119-297 (764)
34 PRK15438 erythronate-4-phospha 96.7 0.057 1.2E-06 59.4 16.7 161 402-598 102-278 (378)
35 PRK05476 S-adenosyl-L-homocyst 96.7 0.0052 1.1E-07 68.4 8.7 116 393-539 192-309 (425)
36 COG0281 SfcA Malic enzyme [Ene 96.6 0.025 5.3E-07 62.7 13.1 123 393-532 176-301 (432)
37 COG0373 HemA Glutamyl-tRNA red 96.6 0.012 2.6E-07 65.2 10.8 115 397-535 159-278 (414)
38 PTZ00075 Adenosylhomocysteinas 96.6 0.006 1.3E-07 68.7 8.5 105 396-528 233-339 (476)
39 PLN03129 NADP-dependent malic 96.5 0.12 2.7E-06 59.5 18.3 180 322-532 243-437 (581)
40 PRK07232 bifunctional malic en 96.5 0.036 7.8E-07 65.8 14.2 126 393-538 162-293 (752)
41 smart00597 ZnF_TTF zinc finger 96.3 0.0011 2.4E-08 58.9 0.4 65 100-167 3-72 (90)
42 PRK00048 dihydrodipicolinate r 96.3 0.021 4.5E-07 59.2 9.7 111 417-556 2-119 (257)
43 PRK13243 glyoxylate reductase; 96.3 0.07 1.5E-06 57.5 14.0 156 411-597 145-311 (333)
44 PRK08410 2-hydroxyacid dehydro 96.3 0.11 2.4E-06 55.5 15.2 112 412-556 141-259 (311)
45 PF03447 NAD_binding_3: Homose 96.2 0.0036 7.7E-08 56.6 3.3 81 423-527 1-87 (117)
46 PRK12549 shikimate 5-dehydroge 96.2 0.07 1.5E-06 56.3 13.2 133 395-552 110-248 (284)
47 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.058 1.3E-06 52.9 11.8 55 389-448 21-76 (168)
48 cd00401 AdoHcyase S-adenosyl-L 96.2 0.012 2.6E-07 65.3 7.7 44 404-448 190-233 (413)
49 PRK13529 malate dehydrogenase; 96.1 0.37 8E-06 55.6 19.0 186 322-532 218-418 (563)
50 PF01488 Shikimate_DH: Shikima 96.1 0.02 4.4E-07 53.5 7.5 105 412-538 8-117 (135)
51 smart00846 Gp_dh_N Glyceraldeh 96.1 0.042 9.1E-07 52.9 9.8 105 417-532 1-120 (149)
52 PRK13302 putative L-aspartate 96.0 0.022 4.8E-07 59.6 8.3 112 414-550 4-119 (271)
53 PRK09599 6-phosphogluconate de 96.0 0.043 9.3E-07 57.8 10.3 116 418-562 2-125 (301)
54 COG0057 GapA Glyceraldehyde-3- 95.9 0.058 1.2E-06 58.3 10.9 106 417-532 2-123 (335)
55 PRK07574 formate dehydrogenase 95.9 0.11 2.5E-06 57.2 13.5 158 412-598 188-357 (385)
56 PF01113 DapB_N: Dihydrodipico 95.9 0.024 5.1E-07 52.5 6.9 116 417-553 1-123 (124)
57 TIGR00936 ahcY adenosylhomocys 95.9 0.036 7.8E-07 61.5 9.5 42 406-448 185-226 (406)
58 PRK12862 malic enzyme; Reviewe 95.9 0.14 2.9E-06 61.2 14.8 157 348-538 139-301 (763)
59 PRK13535 erythrose 4-phosphate 95.8 0.042 9.1E-07 59.6 9.6 106 417-532 2-124 (336)
60 PLN03139 formate dehydrogenase 95.8 0.13 2.8E-06 56.8 13.4 159 411-598 194-364 (386)
61 PF03446 NAD_binding_2: NAD bi 95.8 0.036 7.7E-07 53.2 8.0 110 417-552 2-117 (163)
62 PRK13304 L-aspartate dehydroge 95.8 0.014 3E-07 60.8 5.4 111 417-553 2-120 (265)
63 PRK06932 glycerate dehydrogena 95.7 0.34 7.4E-06 51.9 15.9 34 412-445 143-176 (314)
64 TIGR01532 E4PD_g-proteo D-eryt 95.7 0.053 1.1E-06 58.5 9.8 104 418-531 1-121 (325)
65 cd05312 NAD_bind_1_malic_enz N 95.7 0.18 3.9E-06 53.5 13.5 124 395-532 4-141 (279)
66 PLN02928 oxidoreductase family 95.7 0.29 6.4E-06 53.1 15.4 128 411-555 154-289 (347)
67 cd05212 NAD_bind_m-THF_DH_Cycl 95.6 0.094 2E-06 50.1 10.1 93 393-533 9-103 (140)
68 PRK00676 hemA glutamyl-tRNA re 95.6 0.064 1.4E-06 58.3 9.8 102 398-533 157-263 (338)
69 cd00762 NAD_bind_malic_enz NAD 95.5 0.093 2E-06 54.9 10.3 125 395-532 4-142 (254)
70 PRK14176 bifunctional 5,10-met 95.5 0.056 1.2E-06 57.5 8.7 52 392-448 144-196 (287)
71 PRK06436 glycerate dehydrogena 95.5 0.12 2.5E-06 55.3 11.2 103 413-548 119-228 (303)
72 PLN02494 adenosylhomocysteinas 95.4 0.068 1.5E-06 60.4 9.7 115 395-540 236-352 (477)
73 PF00044 Gp_dh_N: Glyceraldehy 95.4 0.047 1E-06 52.8 7.4 106 418-532 2-121 (151)
74 PF02826 2-Hacid_dh_C: D-isome 95.4 0.023 5E-07 55.4 5.2 111 410-549 30-147 (178)
75 PRK06487 glycerate dehydrogena 95.4 0.12 2.7E-06 55.2 11.0 35 412-446 144-178 (317)
76 COG5322 Predicted dehydrogenas 95.3 0.13 2.9E-06 54.4 10.7 52 393-444 144-196 (351)
77 COG1748 LYS9 Saccharopine dehy 95.3 0.063 1.4E-06 59.3 8.6 124 417-565 2-133 (389)
78 COG0499 SAM1 S-adenosylhomocys 95.2 0.098 2.1E-06 57.2 9.5 96 394-519 190-286 (420)
79 PRK14177 bifunctional 5,10-met 95.2 0.11 2.4E-06 55.1 9.8 94 392-533 139-234 (284)
80 PRK06349 homoserine dehydrogen 95.1 0.041 8.9E-07 61.1 6.7 163 417-610 4-192 (426)
81 PRK09310 aroDE bifunctional 3- 95.0 0.24 5.2E-06 56.0 12.5 152 394-594 314-470 (477)
82 PF03949 Malic_M: Malic enzyme 95.0 0.048 1E-06 57.1 6.3 125 395-532 4-142 (255)
83 TIGR00507 aroE shikimate 5-deh 95.0 0.62 1.3E-05 48.4 14.5 130 395-552 100-235 (270)
84 cd05213 NAD_bind_Glutamyl_tRNA 94.9 0.25 5.5E-06 52.5 11.8 45 403-448 166-210 (311)
85 PRK00257 erythronate-4-phospha 94.9 0.047 1E-06 60.1 6.4 42 404-445 104-145 (381)
86 PLN02358 glyceraldehyde-3-phos 94.9 0.15 3.2E-06 55.5 10.1 107 417-532 6-128 (338)
87 cd01078 NAD_bind_H4MPT_DH NADP 94.9 0.077 1.7E-06 52.1 7.3 54 394-448 6-60 (194)
88 PRK15425 gapA glyceraldehyde-3 94.9 0.15 3.2E-06 55.3 10.0 105 417-531 3-121 (331)
89 TIGR01327 PGDH D-3-phosphoglyc 94.9 0.55 1.2E-05 53.7 15.1 157 411-598 133-301 (525)
90 PRK14175 bifunctional 5,10-met 94.9 0.062 1.4E-06 57.1 7.0 52 392-448 138-190 (286)
91 PRK14192 bifunctional 5,10-met 94.9 0.13 2.7E-06 54.6 9.2 51 393-448 140-191 (283)
92 COG0111 SerA Phosphoglycerate 94.9 0.14 3.1E-06 55.1 9.7 37 411-447 137-173 (324)
93 PRK14187 bifunctional 5,10-met 94.8 0.13 2.8E-06 55.0 9.0 51 393-448 141-192 (294)
94 PRK15409 bifunctional glyoxyla 94.7 0.56 1.2E-05 50.5 13.8 109 411-549 140-256 (323)
95 PRK00258 aroE shikimate 5-dehy 94.7 0.65 1.4E-05 48.6 13.9 132 395-552 105-242 (278)
96 PF01408 GFO_IDH_MocA: Oxidore 94.7 0.15 3.1E-06 45.5 7.9 110 417-551 1-117 (120)
97 PTZ00023 glyceraldehyde-3-phos 94.6 0.15 3.2E-06 55.5 9.1 106 417-531 3-122 (337)
98 PRK14172 bifunctional 5,10-met 94.6 0.19 4.1E-06 53.3 9.7 52 392-448 138-190 (278)
99 PLN03096 glyceraldehyde-3-phos 94.6 0.17 3.8E-06 56.0 9.8 105 417-531 61-182 (395)
100 PLN02516 methylenetetrahydrofo 94.6 0.16 3.5E-06 54.4 9.2 52 392-448 147-199 (299)
101 TIGR01534 GAPDH-I glyceraldehy 94.4 0.19 4.2E-06 54.3 9.5 104 418-531 1-122 (327)
102 PRK08955 glyceraldehyde-3-phos 94.4 0.28 6E-06 53.3 10.6 106 417-532 3-121 (334)
103 PRK14169 bifunctional 5,10-met 94.4 0.24 5.2E-06 52.7 9.7 95 391-533 135-231 (282)
104 PRK13581 D-3-phosphoglycerate 94.3 0.76 1.6E-05 52.6 14.4 109 411-549 135-250 (526)
105 PLN02616 tetrahydrofolate dehy 94.3 0.23 5E-06 54.4 9.6 93 392-532 211-305 (364)
106 PF02882 THF_DHG_CYH_C: Tetrah 94.2 0.14 3E-06 50.1 7.0 53 391-448 15-68 (160)
107 PF10727 Rossmann-like: Rossma 94.2 0.036 7.8E-07 52.1 2.9 110 416-551 10-123 (127)
108 PRK14170 bifunctional 5,10-met 94.2 0.22 4.7E-06 53.0 8.9 94 392-533 137-232 (284)
109 TIGR00036 dapB dihydrodipicoli 94.1 0.34 7.4E-06 50.6 10.3 104 417-541 2-108 (266)
110 PRK14186 bifunctional 5,10-met 94.1 0.22 4.8E-06 53.2 9.1 93 393-533 139-233 (297)
111 PRK14173 bifunctional 5,10-met 94.1 0.22 4.8E-06 53.0 8.9 52 392-448 135-187 (287)
112 TIGR01809 Shik-DH-AROM shikima 94.1 0.88 1.9E-05 47.9 13.3 49 396-448 107-157 (282)
113 PRK14166 bifunctional 5,10-met 94.1 0.23 5.1E-06 52.7 9.0 93 392-532 137-231 (282)
114 TIGR01035 hemA glutamyl-tRNA r 94.1 2.6 5.6E-05 46.9 17.6 104 412-539 176-286 (417)
115 PF13241 NAD_binding_7: Putati 94.0 0.049 1.1E-06 48.7 3.4 36 413-448 4-39 (103)
116 PRK10792 bifunctional 5,10-met 94.0 0.15 3.3E-06 54.2 7.4 52 392-448 139-191 (285)
117 PLN02272 glyceraldehyde-3-phos 94.0 0.25 5.5E-06 55.1 9.5 104 417-529 86-205 (421)
118 PRK07403 glyceraldehyde-3-phos 94.0 0.31 6.6E-06 53.1 9.9 105 417-531 2-122 (337)
119 PF01118 Semialdhyde_dh: Semia 93.9 0.16 3.5E-06 46.4 6.6 97 418-533 1-100 (121)
120 PRK14180 bifunctional 5,10-met 93.9 0.27 5.8E-06 52.3 9.0 94 392-533 138-233 (282)
121 PRK14194 bifunctional 5,10-met 93.9 0.19 4.2E-06 53.8 8.0 52 392-448 139-191 (301)
122 cd01079 NAD_bind_m-THF_DH NAD 93.9 0.18 3.8E-06 51.0 7.2 117 392-533 33-159 (197)
123 PRK14193 bifunctional 5,10-met 93.9 0.31 6.8E-06 51.8 9.4 52 392-448 138-192 (284)
124 PRK14171 bifunctional 5,10-met 93.7 0.29 6.3E-06 52.2 8.8 52 392-448 139-191 (288)
125 TIGR02356 adenyl_thiF thiazole 93.7 0.15 3.2E-06 51.1 6.3 37 413-449 18-54 (202)
126 PRK13303 L-aspartate dehydroge 93.6 0.19 4.1E-06 52.4 7.3 111 417-552 2-119 (265)
127 PLN02819 lysine-ketoglutarate 93.6 0.16 3.5E-06 62.3 7.7 117 415-555 568-704 (1042)
128 PRK14182 bifunctional 5,10-met 93.6 0.31 6.8E-06 51.8 8.9 52 392-448 137-189 (282)
129 PRK07729 glyceraldehyde-3-phos 93.6 0.41 8.8E-06 52.3 9.9 105 417-531 3-121 (343)
130 PRK14189 bifunctional 5,10-met 93.5 0.21 4.6E-06 53.1 7.6 52 392-448 138-190 (285)
131 COG1052 LdhA Lactate dehydroge 93.5 1 2.2E-05 48.7 12.7 110 410-549 140-256 (324)
132 PRK08300 acetaldehyde dehydrog 93.5 0.14 3.1E-06 54.8 6.2 148 415-584 3-171 (302)
133 PTZ00142 6-phosphogluconate de 93.5 0.28 6.1E-06 55.5 8.9 115 417-551 2-123 (470)
134 PRK11579 putative oxidoreducta 93.4 0.51 1.1E-05 50.5 10.4 110 417-553 5-121 (346)
135 PRK14188 bifunctional 5,10-met 93.4 0.27 5.8E-06 52.6 8.0 51 392-447 138-189 (296)
136 PRK06141 ornithine cyclodeamin 93.3 0.67 1.5E-05 49.4 11.1 146 379-553 92-242 (314)
137 TIGR00872 gnd_rel 6-phosphoglu 93.3 0.38 8.3E-06 50.7 9.0 108 418-552 2-116 (298)
138 cd00755 YgdL_like Family of ac 93.3 0.41 9E-06 49.3 9.0 35 414-448 9-43 (231)
139 TIGR01546 GAPDH-II_archae glyc 93.3 0.24 5.3E-06 53.7 7.6 96 419-531 1-107 (333)
140 PRK09424 pntA NAD(P) transhydr 93.3 0.53 1.1E-05 53.9 10.6 35 413-448 162-196 (509)
141 PRK14191 bifunctional 5,10-met 93.2 0.3 6.5E-06 52.0 7.9 52 392-448 137-189 (285)
142 TIGR01921 DAP-DH diaminopimela 93.1 0.37 8E-06 52.2 8.6 101 416-543 3-104 (324)
143 PRK14167 bifunctional 5,10-met 93.1 0.4 8.6E-06 51.4 8.7 94 392-533 137-236 (297)
144 TIGR00873 gnd 6-phosphoglucona 93.1 0.35 7.7E-06 54.6 8.8 120 419-561 2-128 (467)
145 COG1023 Gnd Predicted 6-phosph 93.0 0.38 8.3E-06 50.4 8.2 118 418-563 2-126 (300)
146 PRK15057 UDP-glucose 6-dehydro 93.0 2.1 4.5E-05 47.3 14.5 128 418-558 2-146 (388)
147 PLN02237 glyceraldehyde-3-phos 93.0 0.45 9.7E-06 53.5 9.3 105 417-531 76-197 (442)
148 PRK13301 putative L-aspartate 92.9 0.38 8.3E-06 50.8 8.3 130 417-573 3-150 (267)
149 TIGR01505 tartro_sem_red 2-hyd 92.9 0.36 7.8E-06 50.3 8.1 108 418-552 1-116 (291)
150 PLN02897 tetrahydrofolate dehy 92.8 0.43 9.3E-06 52.1 8.6 93 392-532 194-288 (345)
151 PF02737 3HCDH_N: 3-hydroxyacy 92.7 0.15 3.3E-06 50.2 4.6 87 418-511 1-91 (180)
152 PRK06719 precorrin-2 dehydroge 92.6 0.16 3.4E-06 49.1 4.6 34 412-445 9-42 (157)
153 PLN00203 glutamyl-tRNA reducta 92.6 0.88 1.9E-05 52.2 11.2 121 397-538 245-377 (519)
154 KOG0068 D-3-phosphoglycerate d 92.6 0.18 4E-06 54.8 5.4 100 410-539 140-245 (406)
155 PRK15461 NADH-dependent gamma- 92.5 0.37 8.1E-06 50.8 7.6 107 418-551 3-117 (296)
156 PLN02520 bifunctional 3-dehydr 92.5 1.3 2.9E-05 50.7 12.6 54 394-448 351-410 (529)
157 PRK11064 wecC UDP-N-acetyl-D-m 92.5 1.4 3E-05 48.9 12.4 31 417-448 4-34 (415)
158 PRK12749 quinate/shikimate deh 92.4 2.8 6.1E-05 44.5 14.1 49 396-448 108-156 (288)
159 PRK14185 bifunctional 5,10-met 92.4 0.74 1.6E-05 49.3 9.7 52 392-448 137-193 (293)
160 PRK04207 glyceraldehyde-3-phos 92.4 0.77 1.7E-05 49.8 10.0 103 417-531 2-110 (341)
161 PRK14181 bifunctional 5,10-met 92.4 0.59 1.3E-05 49.9 8.8 52 392-448 133-189 (287)
162 PRK06718 precorrin-2 dehydroge 92.4 0.17 3.8E-06 50.8 4.7 35 412-446 6-40 (202)
163 PF03435 Saccharop_dh: Sacchar 92.3 0.17 3.8E-06 54.7 5.0 118 419-559 1-127 (386)
164 PRK08223 hypothetical protein; 92.3 0.81 1.7E-05 48.8 9.7 36 413-448 24-59 (287)
165 PF03807 F420_oxidored: NADP o 92.2 0.43 9.2E-06 41.2 6.4 89 418-532 1-95 (96)
166 PRK14179 bifunctional 5,10-met 92.2 0.43 9.4E-06 50.8 7.6 52 392-448 138-190 (284)
167 PLN02350 phosphogluconate dehy 92.2 0.72 1.6E-05 52.6 9.8 117 417-551 7-129 (493)
168 PRK15469 ghrA bifunctional gly 92.1 0.22 4.8E-06 53.3 5.4 35 412-446 132-166 (312)
169 PRK12490 6-phosphogluconate de 92.1 0.73 1.6E-05 48.6 9.2 108 418-551 2-116 (299)
170 COG2130 Putative NADP-dependen 92.1 0.18 3.9E-06 54.2 4.6 115 387-531 129-250 (340)
171 PRK08618 ornithine cyclodeamin 92.1 1.9 4.1E-05 46.3 12.4 115 415-551 126-243 (325)
172 COG0169 AroE Shikimate 5-dehyd 92.0 3.6 7.9E-05 43.8 14.2 133 396-551 108-246 (283)
173 PRK14190 bifunctional 5,10-met 91.9 0.41 8.8E-06 51.0 6.9 52 392-448 138-190 (284)
174 TIGR01470 cysG_Nterm siroheme 91.8 0.21 4.6E-06 50.3 4.6 34 413-446 6-39 (205)
175 PRK11790 D-3-phosphoglycerate 91.8 0.22 4.9E-06 55.2 5.2 36 411-446 146-181 (409)
176 PRK05690 molybdopterin biosynt 91.7 0.7 1.5E-05 47.8 8.4 37 413-449 29-65 (245)
177 PF00070 Pyr_redox: Pyridine n 91.7 0.77 1.7E-05 38.7 7.2 48 418-468 1-48 (80)
178 COG0569 TrkA K+ transport syst 91.7 0.91 2E-05 46.3 9.1 113 417-556 1-124 (225)
179 PRK15116 sulfur acceptor prote 91.7 0.83 1.8E-05 48.2 9.0 36 413-448 27-62 (268)
180 PRK14168 bifunctional 5,10-met 91.7 0.72 1.6E-05 49.4 8.6 52 392-448 141-197 (297)
181 PRK12480 D-lactate dehydrogena 91.6 0.26 5.6E-06 53.2 5.3 35 412-446 142-176 (330)
182 PRK12548 shikimate 5-dehydroge 91.4 3.2 6.9E-05 43.8 13.1 49 396-448 110-158 (289)
183 PRK13940 glutamyl-tRNA reducta 91.4 0.39 8.4E-06 53.5 6.5 51 398-448 163-213 (414)
184 TIGR00561 pntA NAD(P) transhyd 91.2 1.9 4.1E-05 49.5 11.9 35 413-448 161-195 (511)
185 PRK14618 NAD(P)H-dependent gly 91.2 5.7 0.00012 42.3 14.8 125 416-557 4-140 (328)
186 PF00899 ThiF: ThiF family; I 91.1 0.46 9.9E-06 44.0 5.7 33 416-448 2-34 (135)
187 PRK08289 glyceraldehyde-3-phos 90.8 5.3 0.00012 45.5 14.6 97 352-476 83-187 (477)
188 cd08230 glucose_DH Glucose deh 90.8 3.2 7E-05 44.0 12.5 33 414-446 171-203 (355)
189 PRK11559 garR tartronate semia 90.7 1.2 2.6E-05 46.4 9.1 31 417-448 3-33 (296)
190 COG0673 MviM Predicted dehydro 90.7 1.4 2.9E-05 46.3 9.5 112 416-551 3-122 (342)
191 PRK14183 bifunctional 5,10-met 90.6 0.81 1.8E-05 48.7 7.7 52 392-448 137-189 (281)
192 TIGR02355 moeB molybdopterin s 90.6 0.8 1.7E-05 47.3 7.5 36 413-448 21-56 (240)
193 PLN02306 hydroxypyruvate reduc 90.6 0.34 7.3E-06 53.5 5.0 35 411-445 160-195 (386)
194 PRK14027 quinate/shikimate deh 90.5 4.1 9E-05 43.2 12.9 131 395-551 110-249 (283)
195 PRK07531 bifunctional 3-hydrox 90.5 1.9 4.2E-05 48.9 11.1 31 417-448 5-35 (495)
196 PF01262 AlaDh_PNT_C: Alanine 90.3 0.42 9.1E-06 46.2 4.9 35 413-447 17-51 (168)
197 PRK07680 late competence prote 90.3 0.96 2.1E-05 46.9 7.8 114 418-555 2-120 (273)
198 TIGR01202 bchC 2-desacetyl-2-h 90.2 0.64 1.4E-05 48.7 6.6 35 414-448 143-177 (308)
199 PRK14851 hypothetical protein; 90.2 2.1 4.5E-05 50.8 11.3 125 413-554 40-167 (679)
200 PRK09260 3-hydroxybutyryl-CoA 90.2 2.7 5.9E-05 43.9 11.1 31 417-448 2-32 (288)
201 PRK10206 putative oxidoreducta 90.0 0.45 9.7E-06 51.3 5.3 110 417-551 2-119 (344)
202 PLN02353 probable UDP-glucose 89.9 6.8 0.00015 44.6 14.7 31 417-448 2-34 (473)
203 PRK05600 thiamine biosynthesis 89.8 1.4 3E-05 48.5 8.9 37 413-449 38-74 (370)
204 COG1004 Ugd Predicted UDP-gluc 89.8 1.3 2.9E-05 49.2 8.6 93 414-533 308-410 (414)
205 PRK14178 bifunctional 5,10-met 89.7 0.89 1.9E-05 48.3 7.1 52 392-448 132-184 (279)
206 cd01483 E1_enzyme_family Super 89.7 1.5 3.3E-05 40.8 8.0 31 418-448 1-31 (143)
207 COG1064 AdhP Zn-dependent alco 89.4 2.4 5.3E-05 46.3 10.3 34 415-448 166-199 (339)
208 PRK07877 hypothetical protein; 89.2 1.6 3.5E-05 52.1 9.3 129 413-562 104-234 (722)
209 COG2084 MmsB 3-hydroxyisobutyr 89.0 1.2 2.5E-05 47.7 7.3 117 417-562 1-126 (286)
210 PRK07340 ornithine cyclodeamin 89.0 2.1 4.5E-05 45.7 9.3 114 414-552 123-239 (304)
211 cd01492 Aos1_SUMO Ubiquitin ac 88.8 1 2.2E-05 45.0 6.5 36 413-448 18-53 (197)
212 PRK13403 ketol-acid reductoiso 88.6 0.58 1.3E-05 50.9 4.8 36 412-447 12-47 (335)
213 COG0190 FolD 5,10-methylene-te 88.5 1 2.2E-05 48.0 6.4 52 392-448 136-188 (283)
214 PRK06476 pyrroline-5-carboxyla 88.3 6.4 0.00014 40.4 12.1 31 418-448 2-34 (258)
215 PTZ00434 cytosolic glyceraldeh 88.2 1.1 2.4E-05 49.3 6.7 32 417-448 4-40 (361)
216 PRK08762 molybdopterin biosynt 88.2 1.3 2.8E-05 48.4 7.3 37 413-449 132-168 (376)
217 TIGR03026 NDP-sugDHase nucleot 88.1 9.1 0.0002 42.2 13.8 30 418-448 2-31 (411)
218 COG1648 CysG Siroheme synthase 88.0 0.73 1.6E-05 46.9 4.9 37 412-448 8-44 (210)
219 TIGR01761 thiaz-red thiazoliny 87.9 2.5 5.4E-05 46.1 9.2 109 416-551 3-119 (343)
220 TIGR03215 ac_ald_DH_ac acetald 87.9 0.98 2.1E-05 48.1 5.9 95 417-534 2-101 (285)
221 PRK14852 hypothetical protein; 87.8 2.7 5.9E-05 51.6 10.2 130 413-560 329-462 (989)
222 PRK14982 acyl-ACP reductase; P 87.5 1.3 2.9E-05 48.2 6.8 55 394-448 133-189 (340)
223 PRK03659 glutathione-regulated 87.4 3.9 8.5E-05 47.6 11.0 141 417-590 401-549 (601)
224 PRK12550 shikimate 5-dehydroge 87.3 9.6 0.00021 40.3 12.8 124 395-551 106-236 (272)
225 PRK15182 Vi polysaccharide bio 87.3 14 0.00031 41.3 14.9 31 416-448 6-36 (425)
226 PRK14184 bifunctional 5,10-met 87.3 1.3 2.9E-05 47.2 6.5 52 392-448 137-193 (286)
227 TIGR01692 HIBADH 3-hydroxyisob 87.2 1.8 3.8E-05 45.4 7.3 104 421-552 1-113 (288)
228 PRK08605 D-lactate dehydrogena 87.2 0.72 1.6E-05 49.7 4.5 35 411-445 141-176 (332)
229 PRK14174 bifunctional 5,10-met 87.1 1.6 3.4E-05 46.9 6.9 52 392-448 139-195 (295)
230 PRK00045 hemA glutamyl-tRNA re 87.0 1.4 3E-05 49.1 6.7 102 413-538 179-288 (423)
231 PRK06046 alanine dehydrogenase 86.7 4.7 0.0001 43.4 10.3 112 415-551 128-244 (326)
232 TIGR00465 ilvC ketol-acid redu 86.6 0.94 2E-05 48.7 5.0 35 414-448 1-35 (314)
233 PRK05597 molybdopterin biosynt 86.5 1.4 3E-05 48.1 6.3 37 413-449 25-61 (355)
234 PRK15059 tartronate semialdehy 86.3 1.9 4.2E-05 45.5 7.1 107 418-552 2-116 (292)
235 PRK00683 murD UDP-N-acetylmura 86.2 2.2 4.8E-05 47.0 7.8 33 415-448 2-34 (418)
236 COG1712 Predicted dinucleotide 86.0 1.9 4.1E-05 44.9 6.5 101 418-543 2-104 (255)
237 PLN02688 pyrroline-5-carboxyla 85.9 7 0.00015 40.0 10.8 24 417-440 1-24 (266)
238 KOG1370 S-adenosylhomocysteine 85.9 2 4.2E-05 46.6 6.8 127 413-568 211-359 (434)
239 PRK05472 redox-sensing transcr 85.8 1.5 3.3E-05 44.0 5.8 52 396-448 65-118 (213)
240 KOG2380 Prephenate dehydrogena 85.7 0.84 1.8E-05 49.9 4.0 34 415-448 51-84 (480)
241 PRK07878 molybdopterin biosynt 85.7 1.9 4.1E-05 47.6 6.9 35 414-448 40-74 (392)
242 PF13380 CoA_binding_2: CoA bi 85.7 7.9 0.00017 35.6 9.9 104 417-553 1-109 (116)
243 PRK00436 argC N-acetyl-gamma-g 85.7 2.8 6E-05 45.5 8.0 100 417-535 3-104 (343)
244 COG0289 DapB Dihydrodipicolina 85.6 8.7 0.00019 40.8 11.3 119 417-556 3-128 (266)
245 PRK05479 ketol-acid reductoiso 85.6 1.1 2.4E-05 48.7 4.9 33 413-445 14-46 (330)
246 PRK12475 thiamine/molybdopteri 85.5 1 2.2E-05 48.9 4.6 37 413-449 21-57 (338)
247 PRK07417 arogenate dehydrogena 85.5 6.9 0.00015 40.8 10.7 30 418-448 2-31 (279)
248 KOG0069 Glyoxylate/hydroxypyru 85.3 3.1 6.8E-05 45.4 8.1 33 410-442 156-188 (336)
249 PRK05717 oxidoreductase; Valid 85.1 1.5 3.2E-05 44.1 5.3 35 411-445 5-40 (255)
250 PRK01438 murD UDP-N-acetylmura 84.8 1.4 3E-05 49.2 5.5 39 409-448 9-47 (480)
251 PRK02472 murD UDP-N-acetylmura 84.8 1.3 2.9E-05 48.7 5.2 35 413-448 2-36 (447)
252 cd00757 ThiF_MoeB_HesA_family 84.7 1.2 2.6E-05 45.2 4.5 36 413-448 18-53 (228)
253 PTZ00353 glycosomal glyceralde 84.5 7.7 0.00017 42.5 10.7 52 417-476 3-55 (342)
254 KOG1257 NADP+-dependent malic 84.4 24 0.00052 40.9 14.7 179 324-534 234-426 (582)
255 COG1063 Tdh Threonine dehydrog 84.4 11 0.00023 40.9 11.8 34 415-448 168-201 (350)
256 TIGR00518 alaDH alanine dehydr 84.4 2.5 5.4E-05 46.3 7.0 34 414-448 165-198 (370)
257 PRK14106 murD UDP-N-acetylmura 84.3 1.4 3.1E-05 48.6 5.2 35 413-448 2-36 (450)
258 PF07991 IlvN: Acetohydroxy ac 84.0 1.4 3E-05 43.6 4.4 35 414-449 2-36 (165)
259 PRK12826 3-ketoacyl-(acyl-carr 83.9 1.8 3.9E-05 42.6 5.3 35 413-447 3-38 (251)
260 TIGR01850 argC N-acetyl-gamma- 83.8 2.5 5.3E-05 46.0 6.6 101 417-536 1-105 (346)
261 PRK05808 3-hydroxybutyryl-CoA 83.7 6 0.00013 41.2 9.3 31 417-448 4-34 (282)
262 PRK08628 short chain dehydroge 83.7 1.7 3.7E-05 43.5 5.1 36 411-446 2-38 (258)
263 PRK06928 pyrroline-5-carboxyla 83.6 4.1 8.9E-05 42.6 8.0 118 417-559 2-127 (277)
264 PRK07530 3-hydroxybutyryl-CoA 83.4 1.9 4.1E-05 45.1 5.4 31 417-448 5-35 (292)
265 TIGR02371 ala_DH_arch alanine 83.2 8.7 0.00019 41.3 10.5 115 415-554 127-245 (325)
266 COG0677 WecC UDP-N-acetyl-D-ma 83.2 6.6 0.00014 44.0 9.5 115 417-547 10-147 (436)
267 PRK03562 glutathione-regulated 83.0 8.6 0.00019 45.1 11.1 113 417-555 401-520 (621)
268 COG2085 Predicted dinucleotide 82.9 4.8 0.0001 41.3 7.8 31 417-448 2-32 (211)
269 PRK08268 3-hydroxy-acyl-CoA de 82.9 2 4.3E-05 49.1 5.7 31 417-448 8-38 (507)
270 PRK12828 short chain dehydroge 82.8 2.1 4.5E-05 41.8 5.2 34 413-446 4-38 (239)
271 cd01487 E1_ThiF_like E1_ThiF_l 82.7 3.1 6.6E-05 40.8 6.2 31 418-448 1-31 (174)
272 PLN02712 arogenate dehydrogena 82.7 1.9 4.1E-05 51.0 5.6 37 410-446 363-399 (667)
273 PRK07523 gluconate 5-dehydroge 82.5 2.1 4.6E-05 42.8 5.2 35 413-448 7-42 (255)
274 PRK04690 murD UDP-N-acetylmura 82.4 1.7 3.7E-05 48.9 4.9 34 414-448 6-39 (468)
275 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.4 1.8 3.9E-05 49.5 5.1 31 417-448 6-36 (503)
276 PLN02858 fructose-bisphosphate 82.2 4.6 9.9E-05 51.6 9.0 111 415-551 3-122 (1378)
277 TIGR01832 kduD 2-deoxy-D-gluco 82.2 2.2 4.7E-05 42.4 5.1 34 413-446 2-36 (248)
278 PRK07819 3-hydroxybutyryl-CoA 82.2 2 4.3E-05 45.4 5.0 31 417-448 6-36 (286)
279 PRK06138 short chain dehydroge 81.9 2.3 5E-05 42.1 5.2 34 413-446 2-36 (252)
280 PRK07060 short chain dehydroge 81.9 2.4 5.3E-05 41.7 5.3 35 412-446 5-40 (245)
281 cd08239 THR_DH_like L-threonin 81.9 24 0.00051 37.0 12.9 33 414-446 162-195 (339)
282 PRK10669 putative cation:proto 81.8 5.8 0.00013 45.5 9.0 108 417-551 418-532 (558)
283 PRK08328 hypothetical protein; 81.6 1.7 3.8E-05 44.4 4.2 123 413-551 24-147 (231)
284 PRK06841 short chain dehydroge 81.4 2.6 5.6E-05 42.0 5.3 35 412-446 11-46 (255)
285 TIGR02354 thiF_fam2 thiamine b 81.4 1.9 4.2E-05 43.3 4.4 37 413-449 18-54 (200)
286 PRK05562 precorrin-2 dehydroge 81.4 2.1 4.6E-05 44.1 4.7 37 412-448 21-57 (223)
287 COG2344 AT-rich DNA-binding pr 81.3 2.8 6.1E-05 42.5 5.4 53 395-448 64-118 (211)
288 PRK05557 fabG 3-ketoacyl-(acyl 81.2 3 6.5E-05 40.8 5.6 36 413-448 2-38 (248)
289 CHL00073 chlN photochlorophyll 80.9 17 0.00037 41.4 12.0 41 408-448 306-346 (457)
290 PRK12491 pyrroline-5-carboxyla 80.8 30 0.00064 36.4 13.1 119 417-561 3-129 (272)
291 PRK07231 fabG 3-ketoacyl-(acyl 80.7 2.9 6.2E-05 41.3 5.3 35 413-448 2-37 (251)
292 PRK06523 short chain dehydroge 80.6 2.8 6.1E-05 42.0 5.3 35 412-446 5-40 (260)
293 PRK01710 murD UDP-N-acetylmura 80.6 1.8 3.8E-05 48.4 4.2 36 412-448 10-45 (458)
294 COG1179 Dinucleotide-utilizing 80.3 1.7 3.7E-05 45.6 3.6 35 414-448 28-62 (263)
295 PRK06129 3-hydroxyacyl-CoA deh 80.3 27 0.0006 36.9 12.8 31 417-448 3-33 (308)
296 KOG0022 Alcohol dehydrogenase, 80.3 2 4.3E-05 46.7 4.2 49 390-445 174-223 (375)
297 PRK05786 fabG 3-ketoacyl-(acyl 80.2 3.1 6.6E-05 41.0 5.3 34 413-446 2-36 (238)
298 PLN02858 fructose-bisphosphate 80.2 5.6 0.00012 50.9 8.8 110 415-551 323-442 (1378)
299 PLN02240 UDP-glucose 4-epimera 80.2 2.8 6E-05 44.1 5.3 35 413-447 2-37 (352)
300 PRK12938 acetyacetyl-CoA reduc 80.1 3.1 6.7E-05 41.2 5.3 35 414-448 1-36 (246)
301 cd08237 ribitol-5-phosphate_DH 80.0 12 0.00026 39.8 10.1 33 415-448 163-197 (341)
302 PRK02006 murD UDP-N-acetylmura 80.0 2.3 5.1E-05 47.9 5.0 36 413-449 4-39 (498)
303 PRK08416 7-alpha-hydroxysteroi 80.0 3.1 6.7E-05 42.0 5.4 37 412-448 4-41 (260)
304 PRK06823 ornithine cyclodeamin 79.9 12 0.00027 40.2 10.1 149 378-554 93-246 (315)
305 KOG2018 Predicted dinucleotide 79.8 4.5 9.7E-05 44.0 6.6 35 413-447 71-105 (430)
306 PRK06153 hypothetical protein; 79.7 1.3 2.8E-05 49.2 2.7 36 413-448 173-208 (393)
307 PLN02586 probable cinnamyl alc 79.6 5 0.00011 43.1 7.1 35 414-448 182-216 (360)
308 PRK07114 keto-hydroxyglutarate 79.6 7.2 0.00016 40.2 7.9 95 425-556 26-121 (222)
309 PRK01390 murD UDP-N-acetylmura 79.6 2.5 5.3E-05 47.1 4.9 34 414-448 7-40 (460)
310 PRK08703 short chain dehydroge 79.6 3.4 7.4E-05 40.9 5.4 34 413-446 3-37 (239)
311 COG0771 MurD UDP-N-acetylmuram 79.6 10 0.00022 43.0 9.7 35 413-448 4-38 (448)
312 PRK08644 thiamine biosynthesis 79.4 2.3 4.9E-05 43.1 4.2 36 413-448 25-60 (212)
313 PRK07688 thiamine/molybdopteri 79.4 2.3 4.9E-05 46.2 4.4 36 413-448 21-56 (339)
314 PF01210 NAD_Gly3P_dh_N: NAD-d 79.3 6.5 0.00014 37.6 7.1 30 418-448 1-30 (157)
315 PF03721 UDPG_MGDP_dh_N: UDP-g 79.3 2.5 5.5E-05 41.9 4.4 29 417-445 1-29 (185)
316 cd01485 E1-1_like Ubiquitin ac 79.2 2.2 4.7E-05 42.7 3.9 36 414-449 17-52 (198)
317 cd05188 MDR Medium chain reduc 79.1 32 0.0007 33.8 12.2 41 408-448 127-167 (271)
318 PRK06172 short chain dehydroge 79.1 3.5 7.5E-05 41.2 5.4 36 412-448 3-39 (253)
319 PRK08217 fabG 3-ketoacyl-(acyl 79.0 3.6 7.7E-05 40.6 5.4 35 413-448 2-37 (253)
320 PRK06125 short chain dehydroge 79.0 3.6 7.8E-05 41.4 5.5 35 412-446 3-38 (259)
321 PRK13394 3-hydroxybutyrate deh 78.8 3.4 7.4E-05 41.2 5.2 33 413-445 4-37 (262)
322 PRK08642 fabG 3-ketoacyl-(acyl 78.7 4 8.6E-05 40.5 5.6 35 413-447 2-37 (253)
323 PRK04148 hypothetical protein; 78.7 3.8 8.2E-05 39.2 5.1 33 414-448 15-47 (134)
324 PRK07774 short chain dehydroge 78.7 3.6 7.9E-05 40.8 5.3 33 413-445 3-36 (250)
325 PRK08293 3-hydroxybutyryl-CoA 78.6 3.3 7.3E-05 43.3 5.3 31 417-448 4-34 (287)
326 TIGR00978 asd_EA aspartate-sem 78.5 3.7 7.9E-05 44.4 5.7 101 417-530 1-104 (341)
327 PRK12429 3-hydroxybutyrate deh 78.5 3.5 7.7E-05 40.9 5.2 33 414-446 2-35 (258)
328 PRK12742 oxidoreductase; Provi 78.5 3.9 8.5E-05 40.2 5.5 34 413-446 3-37 (237)
329 PRK09072 short chain dehydroge 78.4 3.8 8.2E-05 41.3 5.4 34 413-446 2-36 (263)
330 PRK08993 2-deoxy-D-gluconate 3 78.3 3.4 7.4E-05 41.6 5.1 33 413-445 7-40 (253)
331 PRK12829 short chain dehydroge 78.2 3.6 7.9E-05 41.0 5.2 34 413-446 8-42 (264)
332 PRK04308 murD UDP-N-acetylmura 78.1 3.3 7.2E-05 45.9 5.3 35 413-448 2-36 (445)
333 PRK06550 fabG 3-ketoacyl-(acyl 78.0 3.8 8.2E-05 40.3 5.2 34 413-446 2-36 (235)
334 TIGR03325 BphB_TodD cis-2,3-di 77.9 3.8 8.3E-05 41.3 5.3 33 413-445 2-35 (262)
335 PRK09186 flagellin modificatio 77.8 3.6 7.8E-05 40.9 5.0 32 414-445 2-34 (256)
336 PRK08945 putative oxoacyl-(acy 77.5 3.5 7.7E-05 41.0 4.9 34 413-446 9-43 (247)
337 PRK06124 gluconate 5-dehydroge 77.4 4.1 8.9E-05 40.7 5.3 35 412-446 7-42 (256)
338 PRK06197 short chain dehydroge 77.3 3.8 8.3E-05 42.6 5.2 36 412-447 12-48 (306)
339 PRK10637 cysG siroheme synthas 77.2 3 6.5E-05 47.0 4.7 36 412-447 8-43 (457)
340 PRK07890 short chain dehydroge 77.1 4 8.7E-05 40.6 5.2 35 413-448 2-37 (258)
341 PRK08261 fabG 3-ketoacyl-(acyl 77.1 13 0.00027 41.1 9.5 34 412-445 206-240 (450)
342 PRK06949 short chain dehydroge 77.0 4.3 9.3E-05 40.5 5.3 35 412-446 5-40 (258)
343 PRK05653 fabG 3-ketoacyl-(acyl 77.0 4.4 9.4E-05 39.6 5.3 34 413-446 2-36 (246)
344 PLN02256 arogenate dehydrogena 76.9 5 0.00011 43.0 6.0 35 413-447 33-67 (304)
345 TIGR01296 asd_B aspartate-semi 76.8 3.5 7.5E-05 44.8 4.9 83 418-527 1-89 (339)
346 PRK08936 glucose-1-dehydrogena 76.7 4.9 0.00011 40.4 5.7 36 412-447 3-39 (261)
347 KOG1196 Predicted NAD-dependen 76.6 5.4 0.00012 43.2 6.1 123 386-533 131-256 (343)
348 PRK08339 short chain dehydroge 76.6 4.5 9.8E-05 41.2 5.5 36 412-448 4-40 (263)
349 PRK06398 aldose dehydrogenase; 76.6 4.4 9.6E-05 41.0 5.3 34 413-446 3-37 (258)
350 PRK12939 short chain dehydroge 76.5 4.5 9.7E-05 39.9 5.2 33 413-445 4-37 (250)
351 PRK05579 bifunctional phosphop 76.5 7.6 0.00017 43.3 7.5 54 401-457 175-245 (399)
352 PRK08264 short chain dehydroge 76.5 4.3 9.2E-05 40.0 5.1 34 413-446 3-38 (238)
353 PLN02896 cinnamyl-alcohol dehy 76.3 4.5 9.8E-05 43.0 5.6 37 411-447 5-42 (353)
354 PRK07062 short chain dehydroge 76.3 4.6 0.0001 40.7 5.4 34 412-445 4-38 (265)
355 PRK07035 short chain dehydroge 76.2 4.4 9.6E-05 40.4 5.2 34 413-446 5-39 (252)
356 PRK03369 murD UDP-N-acetylmura 76.2 3.8 8.1E-05 46.4 5.1 34 414-448 10-43 (488)
357 TIGR02992 ectoine_eutC ectoine 76.2 17 0.00037 39.1 9.9 114 415-554 128-248 (326)
358 PRK12937 short chain dehydroge 76.1 5.1 0.00011 39.5 5.5 36 413-448 2-38 (245)
359 PRK06057 short chain dehydroge 76.1 4.4 9.5E-05 40.6 5.1 33 413-445 4-37 (255)
360 PRK07814 short chain dehydroge 76.0 4.5 9.8E-05 40.9 5.2 34 413-446 7-41 (263)
361 PRK08291 ectoine utilization p 75.8 35 0.00076 36.8 12.1 119 415-556 131-253 (330)
362 PRK09135 pteridine reductase; 75.7 4.8 0.0001 39.6 5.2 34 414-447 4-38 (249)
363 PRK07806 short chain dehydroge 75.5 5.7 0.00012 39.4 5.7 35 413-447 3-38 (248)
364 PRK08063 enoyl-(acyl carrier p 75.5 5.1 0.00011 39.7 5.4 35 414-448 2-37 (250)
365 PRK07066 3-hydroxybutyryl-CoA 75.4 4.3 9.4E-05 43.9 5.1 31 417-448 8-38 (321)
366 TIGR02622 CDP_4_6_dhtase CDP-g 75.2 4.3 9.4E-05 43.1 5.1 33 414-446 2-35 (349)
367 PRK00141 murD UDP-N-acetylmura 75.2 4 8.8E-05 45.9 5.1 35 413-448 12-46 (473)
368 PRK12746 short chain dehydroge 75.2 5.5 0.00012 39.6 5.5 33 413-445 3-36 (254)
369 PRK05875 short chain dehydroge 75.1 5.1 0.00011 40.6 5.4 34 413-446 4-38 (276)
370 PRK12823 benD 1,6-dihydroxycyc 75.1 4.9 0.00011 40.3 5.2 35 413-448 5-40 (260)
371 PRK06463 fabG 3-ketoacyl-(acyl 75.0 5.9 0.00013 39.7 5.7 36 412-447 3-39 (255)
372 PRK06077 fabG 3-ketoacyl-(acyl 75.0 5.7 0.00012 39.3 5.6 36 413-448 3-39 (252)
373 PRK05872 short chain dehydroge 74.7 5 0.00011 41.7 5.3 34 412-445 5-39 (296)
374 PRK07478 short chain dehydroge 74.7 5.5 0.00012 39.9 5.4 34 413-446 3-37 (254)
375 PRK07576 short chain dehydroge 74.7 5.2 0.00011 40.7 5.3 34 413-446 6-40 (264)
376 COG0345 ProC Pyrroline-5-carbo 74.6 59 0.0013 34.6 13.1 121 417-562 2-127 (266)
377 PRK07063 short chain dehydroge 74.6 5.2 0.00011 40.2 5.2 33 413-445 4-37 (260)
378 PRK06935 2-deoxy-D-gluconate 3 74.5 5.2 0.00011 40.2 5.2 33 413-445 12-45 (258)
379 PRK06522 2-dehydropantoate 2-r 74.5 4.3 9.2E-05 42.0 4.7 29 417-445 1-29 (304)
380 PRK09880 L-idonate 5-dehydroge 74.5 8.1 0.00018 40.9 6.9 35 414-448 168-202 (343)
381 PRK05867 short chain dehydroge 74.5 5.1 0.00011 40.2 5.1 33 413-445 6-39 (253)
382 PLN02383 aspartate semialdehyd 74.4 8.1 0.00018 42.2 7.0 26 415-440 6-32 (344)
383 cd08298 CAD2 Cinnamyl alcohol 74.4 17 0.00038 37.6 9.2 38 411-448 163-200 (329)
384 PRK06196 oxidoreductase; Provi 74.4 5.1 0.00011 41.9 5.3 36 411-446 21-57 (315)
385 PRK14619 NAD(P)H-dependent gly 74.4 4.4 9.6E-05 42.9 4.8 33 415-448 3-35 (308)
386 PRK00421 murC UDP-N-acetylmura 74.4 4.1 8.9E-05 45.5 4.8 34 414-448 5-39 (461)
387 TIGR01182 eda Entner-Doudoroff 74.4 8.6 0.00019 39.2 6.7 90 425-555 19-109 (204)
388 PRK08226 short chain dehydroge 74.3 5.3 0.00011 40.1 5.2 34 413-446 3-37 (263)
389 PLN02653 GDP-mannose 4,6-dehyd 74.3 4.8 0.0001 42.4 5.1 35 413-447 3-38 (340)
390 PRK06171 sorbitol-6-phosphate 74.3 5.4 0.00012 40.2 5.2 34 413-446 6-40 (266)
391 PRK06015 keto-hydroxyglutarate 74.2 9.8 0.00021 38.7 7.0 90 426-556 16-106 (201)
392 PRK08213 gluconate 5-dehydroge 74.2 5.3 0.00012 40.1 5.2 34 413-446 9-43 (259)
393 PRK07411 hypothetical protein; 74.1 3.6 7.9E-05 45.5 4.3 36 413-448 35-70 (390)
394 TIGR03736 PRTRC_ThiF PRTRC sys 74.1 3.6 7.8E-05 43.0 4.0 26 415-440 10-35 (244)
395 PRK12748 3-ketoacyl-(acyl-carr 74.1 5.2 0.00011 40.1 5.1 34 413-446 2-38 (256)
396 PRK09242 tropinone reductase; 74.1 5.3 0.00012 40.0 5.1 34 413-446 6-40 (257)
397 PRK06079 enoyl-(acyl carrier p 74.0 5.5 0.00012 40.3 5.2 33 413-445 4-39 (252)
398 PRK12481 2-deoxy-D-gluconate 3 73.8 5.1 0.00011 40.4 5.0 33 413-445 5-38 (251)
399 COG1250 FadB 3-hydroxyacyl-CoA 73.8 3.9 8.4E-05 44.2 4.2 33 416-449 3-35 (307)
400 PRK06500 short chain dehydroge 73.8 5.4 0.00012 39.4 5.0 33 413-445 3-36 (249)
401 TIGR03628 arch_S11P archaeal r 73.7 13 0.00028 34.8 7.1 64 389-452 38-110 (114)
402 PRK08664 aspartate-semialdehyd 73.5 5 0.00011 43.5 5.1 99 417-531 4-108 (349)
403 PRK07825 short chain dehydroge 73.5 6 0.00013 40.1 5.4 33 413-445 2-35 (273)
404 PLN00141 Tic62-NAD(P)-related 73.4 5.3 0.00011 40.3 5.0 37 412-448 13-50 (251)
405 PRK07577 short chain dehydroge 73.3 6 0.00013 38.8 5.2 33 415-447 2-35 (234)
406 PRK06194 hypothetical protein; 73.2 5.7 0.00012 40.5 5.2 33 413-445 3-36 (287)
407 PRK05876 short chain dehydroge 73.2 5.8 0.00013 40.9 5.3 35 413-448 3-38 (275)
408 KOG1502 Flavonol reductase/cin 73.2 4.8 0.0001 43.8 4.8 33 415-447 5-38 (327)
409 TIGR02130 dapB_plant dihydrodi 73.1 17 0.00037 38.8 8.7 119 418-555 2-126 (275)
410 PRK00066 ldh L-lactate dehydro 72.9 5.5 0.00012 42.8 5.1 34 415-448 5-39 (315)
411 PRK07856 short chain dehydroge 72.8 6.6 0.00014 39.3 5.4 35 412-446 2-37 (252)
412 TIGR03366 HpnZ_proposed putati 72.7 10 0.00023 38.9 7.0 34 414-448 119-153 (280)
413 PRK12825 fabG 3-ketoacyl-(acyl 72.7 6.8 0.00015 38.2 5.4 35 414-448 4-39 (249)
414 PLN02986 cinnamyl-alcohol dehy 72.6 6.6 0.00014 41.0 5.6 35 414-448 3-38 (322)
415 PRK05225 ketol-acid reductoiso 72.5 2.1 4.5E-05 48.6 1.9 31 413-443 33-63 (487)
416 PRK09607 rps11p 30S ribosomal 72.5 14 0.00031 35.3 7.2 65 389-453 45-118 (132)
417 PRK11880 pyrroline-5-carboxyla 72.5 20 0.00044 36.7 9.0 32 417-448 3-36 (267)
418 PRK06300 enoyl-(acyl carrier p 72.3 5.6 0.00012 42.3 5.0 36 411-447 3-41 (299)
419 PRK14874 aspartate-semialdehyd 72.3 12 0.00026 40.4 7.6 84 416-527 1-91 (334)
420 PF13738 Pyr_redox_3: Pyridine 72.2 4.7 0.0001 38.8 4.1 32 413-444 164-195 (203)
421 PRK08085 gluconate 5-dehydroge 72.1 6.3 0.00014 39.4 5.1 35 413-448 6-41 (254)
422 PLN02514 cinnamyl-alcohol dehy 72.1 11 0.00024 40.4 7.2 42 407-448 172-213 (357)
423 PRK06198 short chain dehydroge 72.1 6.7 0.00014 39.2 5.3 36 413-448 3-39 (260)
424 PRK11730 fadB multifunctional 72.0 5.8 0.00013 47.3 5.6 31 417-448 314-344 (715)
425 TIGR03206 benzo_BadH 2-hydroxy 71.9 6.3 0.00014 39.0 5.0 32 414-445 1-33 (250)
426 PLN02775 Probable dihydrodipic 71.9 24 0.00053 37.8 9.6 113 417-555 12-137 (286)
427 PRK15181 Vi polysaccharide bio 71.9 5.6 0.00012 42.4 5.0 35 413-447 12-47 (348)
428 PLN02253 xanthoxin dehydrogena 71.8 6.7 0.00014 39.9 5.3 33 413-445 15-48 (280)
429 PRK12827 short chain dehydroge 71.8 6.6 0.00014 38.6 5.1 34 413-446 3-37 (249)
430 COG0136 Asd Aspartate-semialde 71.6 26 0.00056 38.5 9.8 24 416-439 1-25 (334)
431 KOG2741 Dimeric dihydrodiol de 71.6 25 0.00054 38.8 9.7 113 417-551 7-127 (351)
432 PRK07326 short chain dehydroge 71.6 7.3 0.00016 38.3 5.4 32 414-445 4-36 (237)
433 TIGR01743 purR_Bsub pur operon 71.5 51 0.0011 35.1 11.8 106 203-338 16-123 (268)
434 PLN02662 cinnamyl-alcohol dehy 71.5 5.4 0.00012 41.3 4.6 33 415-447 3-36 (322)
435 cd05291 HicDH_like L-2-hydroxy 71.4 6 0.00013 42.0 5.0 32 417-448 1-33 (306)
436 PRK08220 2,3-dihydroxybenzoate 71.3 7.5 0.00016 38.6 5.4 36 412-447 4-40 (252)
437 PLN02178 cinnamyl-alcohol dehy 71.3 10 0.00023 41.2 6.9 34 415-448 178-211 (375)
438 PRK06505 enoyl-(acyl carrier p 71.3 6.7 0.00015 40.4 5.2 35 413-448 4-41 (271)
439 PRK12744 short chain dehydroge 71.2 7 0.00015 39.3 5.2 35 413-447 5-40 (257)
440 PRK07589 ornithine cyclodeamin 71.2 52 0.0011 36.1 12.2 117 415-555 128-249 (346)
441 PF13460 NAD_binding_10: NADH( 71.1 6.3 0.00014 37.4 4.6 30 419-448 1-31 (183)
442 PRK05565 fabG 3-ketoacyl-(acyl 71.1 7.1 0.00015 38.3 5.1 36 413-448 2-38 (247)
443 TIGR02437 FadB fatty oxidation 71.0 6.3 0.00014 47.0 5.5 31 417-448 314-344 (714)
444 PRK12859 3-ketoacyl-(acyl-carr 71.0 6.8 0.00015 39.6 5.1 33 413-445 3-38 (256)
445 PRK07666 fabG 3-ketoacyl-(acyl 70.9 7.6 0.00016 38.4 5.3 34 413-446 4-38 (239)
446 PRK06114 short chain dehydroge 70.7 7.3 0.00016 39.1 5.3 35 413-448 5-40 (254)
447 PRK08594 enoyl-(acyl carrier p 70.7 6.9 0.00015 39.8 5.1 33 413-445 4-39 (257)
448 PRK07067 sorbitol dehydrogenas 70.7 7.4 0.00016 39.0 5.2 33 413-445 3-36 (257)
449 cd08231 MDR_TM0436_like Hypoth 70.7 12 0.00026 39.7 7.1 41 407-447 169-210 (361)
450 PRK06914 short chain dehydroge 70.6 7.1 0.00015 39.7 5.1 33 415-447 2-35 (280)
451 TIGR03632 bact_S11 30S ribosom 70.4 17 0.00037 33.4 7.1 64 390-453 36-100 (108)
452 PRK08265 short chain dehydroge 70.4 7.4 0.00016 39.4 5.2 35 413-448 3-38 (261)
453 PF02254 TrkA_N: TrkA-N domain 70.3 7.5 0.00016 34.4 4.7 101 419-549 1-111 (116)
454 PRK05854 short chain dehydroge 70.3 7.3 0.00016 41.0 5.3 35 412-446 10-45 (313)
455 PRK05866 short chain dehydroge 70.3 7.7 0.00017 40.5 5.5 36 411-446 35-71 (293)
456 PLN02206 UDP-glucuronate decar 70.3 6.4 0.00014 44.1 5.1 37 411-447 114-151 (442)
457 PRK09496 trkA potassium transp 70.2 9.4 0.0002 42.0 6.3 35 413-448 228-262 (453)
458 PRK08589 short chain dehydroge 70.1 7.5 0.00016 39.7 5.2 33 413-445 3-36 (272)
459 PRK08278 short chain dehydroge 70.1 7.7 0.00017 39.7 5.3 34 413-446 3-37 (273)
460 TIGR02822 adh_fam_2 zinc-bindi 69.8 35 0.00076 36.1 10.4 33 414-446 164-196 (329)
461 PLN03154 putative allyl alcoho 69.5 13 0.00028 39.8 7.1 35 414-448 157-192 (348)
462 KOG0023 Alcohol dehydrogenase, 69.3 8.3 0.00018 42.2 5.4 42 406-448 173-214 (360)
463 PLN02730 enoyl-[acyl-carrier-p 69.2 7.5 0.00016 41.5 5.2 34 411-444 4-40 (303)
464 cd08295 double_bond_reductase_ 69.2 14 0.00031 38.8 7.2 35 414-448 150-185 (338)
465 PRK12747 short chain dehydroge 69.1 8.6 0.00019 38.4 5.3 33 414-446 2-35 (252)
466 COG0300 DltE Short-chain dehyd 69.1 12 0.00027 39.6 6.6 36 413-448 3-39 (265)
467 PRK06113 7-alpha-hydroxysteroi 69.0 8.2 0.00018 38.7 5.2 34 413-446 8-42 (255)
468 TIGR02441 fa_ox_alpha_mit fatt 69.0 6.6 0.00014 47.1 5.2 31 417-448 336-366 (737)
469 PRK12359 flavodoxin FldB; Prov 69.0 9.2 0.0002 37.8 5.4 44 412-455 75-128 (172)
470 PRK07097 gluconate 5-dehydroge 69.0 8.1 0.00017 39.1 5.1 36 412-448 6-42 (265)
471 PLN02695 GDP-D-mannose-3',5'-e 69.0 6.9 0.00015 42.4 4.9 32 415-446 20-52 (370)
472 PRK06200 2,3-dihydroxy-2,3-dih 69.0 8 0.00017 38.9 5.1 34 413-446 3-37 (263)
473 PRK07533 enoyl-(acyl carrier p 68.9 8.6 0.00019 39.0 5.4 36 412-448 6-44 (258)
474 PRK07792 fabG 3-ketoacyl-(acyl 68.9 7.8 0.00017 40.6 5.2 36 412-448 8-44 (306)
475 PLN00198 anthocyanidin reducta 68.7 7.4 0.00016 41.0 5.0 34 413-446 6-40 (338)
476 PRK09620 hypothetical protein; 68.7 8.3 0.00018 39.7 5.2 35 414-448 1-52 (229)
477 PRK08017 oxidoreductase; Provi 68.6 7.6 0.00017 38.6 4.8 31 417-447 3-34 (256)
478 PF03853 YjeF_N: YjeF-related 68.6 20 0.00044 34.9 7.6 47 394-444 7-57 (169)
479 PRK11154 fadJ multifunctional 68.5 7.5 0.00016 46.3 5.4 31 417-448 310-341 (708)
480 PRK12743 oxidoreductase; Provi 68.4 9.1 0.0002 38.5 5.3 33 416-448 2-35 (256)
481 CHL00041 rps11 ribosomal prote 68.4 20 0.00044 33.4 7.1 65 390-454 49-114 (116)
482 PRK12935 acetoacetyl-CoA reduc 68.4 9.8 0.00021 37.7 5.5 35 413-447 3-38 (247)
483 PRK07984 enoyl-(acyl carrier p 68.2 8.9 0.00019 39.4 5.3 34 414-448 4-40 (262)
484 PRK12771 putative glutamate sy 68.0 6.6 0.00014 45.1 4.7 34 414-448 135-168 (564)
485 PLN02427 UDP-apiose/xylose syn 68.0 8.2 0.00018 41.7 5.2 37 411-447 9-47 (386)
486 PRK06182 short chain dehydroge 67.9 8.8 0.00019 39.0 5.2 32 415-446 2-34 (273)
487 PF02558 ApbA: Ketopantoate re 67.9 8.5 0.00018 35.7 4.7 30 419-448 1-30 (151)
488 PRK07370 enoyl-(acyl carrier p 67.9 8.5 0.00018 39.1 5.1 33 413-445 3-38 (258)
489 PRK08277 D-mannonate oxidoredu 67.8 8.8 0.00019 39.0 5.2 36 412-448 6-42 (278)
490 PRK03806 murD UDP-N-acetylmura 67.8 7.9 0.00017 42.8 5.1 36 413-449 3-38 (438)
491 PLN02214 cinnamoyl-CoA reducta 67.7 8 0.00017 41.3 5.0 34 414-447 8-42 (342)
492 COG0686 Ald Alanine dehydrogen 67.6 8.5 0.00018 42.0 5.1 34 414-448 166-199 (371)
493 PRK07831 short chain dehydroge 67.6 9 0.00019 38.6 5.1 35 413-448 14-50 (262)
494 PRK05309 30S ribosomal protein 67.6 21 0.00045 33.9 7.2 64 390-453 53-117 (128)
495 PRK05993 short chain dehydroge 67.4 8.5 0.00018 39.4 5.0 32 415-446 3-35 (277)
496 cd01491 Ube1_repeat1 Ubiquitin 67.4 6.5 0.00014 42.0 4.2 35 414-448 17-51 (286)
497 TIGR01915 npdG NADPH-dependent 67.3 8.2 0.00018 38.8 4.8 31 417-448 1-32 (219)
498 PF00106 adh_short: short chai 67.2 9.2 0.0002 35.4 4.8 32 417-448 1-33 (167)
499 PRK07985 oxidoreductase; Provi 67.2 8.7 0.00019 40.0 5.1 33 413-445 46-79 (294)
500 PRK14806 bifunctional cyclohex 67.0 15 0.00033 43.4 7.7 115 417-556 4-124 (735)
No 1
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-139 Score=1127.76 Aligned_cols=443 Identities=49% Similarity=0.928 Sum_probs=431.5
Q ss_pred hhhHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEec
Q 006671 190 SKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFS 269 (636)
Q Consensus 190 ~~~~~~~~~~~~~~~p~~~ef~q~v~e~~~~~~~~l~~~p~y~~i~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqhs 269 (636)
.++++++++.+++|+|+|+||+|||+|+++|+.|+|+++|+|.+++++|++|+|+|+|+|||+||+|++++|+|||||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn 90 (454)
T PTZ00079 11 AQEMDALRKRVKSRDPNQPEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYN 90 (454)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEecCCCHHHHHHHHHHhhhhhccCCCCCCCceEEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCccc
Q 006671 270 QALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLP 349 (636)
Q Consensus 270 ~alGPakGGlRfhp~v~~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~r~~r~f~~eL~~~IGp~~DVp 349 (636)
+++|||||||||||+||++++++||++|||||||++||||||||||+|||+++|+.|+|||||+||++|.+||||++|||
T Consensus 91 ~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~Dvp 170 (454)
T PTZ00079 91 SALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVP 170 (454)
T ss_pred CCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHH
Q 006671 350 SEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAM 429 (636)
Q Consensus 350 A~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~ 429 (636)
||||||+++||+||+++|+++++.++|++||||+.+|||.+|++||||||+|++++++++.+.+|+|+||+||||||||+
T Consensus 171 A~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~ 250 (454)
T PTZ00079 171 AGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQ 250 (454)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhc-CCccccccccCCceeeCCCCccccccceEecCCCc
Q 006671 430 HVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ 508 (636)
Q Consensus 430 ~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~-g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~ 508 (636)
++|++|++.|+|||+|||++|+||||+|||+++|..|.++|+.+ +++.+|...++++++++++++|+++||||+|||++
T Consensus 251 ~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~ 330 (454)
T PTZ00079 251 YAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQ 330 (454)
T ss_pred HHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEecccc
Confidence 99999999999999999999999999999999998889998765 78988876677899999999999999999999999
Q ss_pred CccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhccccCCCCCCHHHHHHHHHH
Q 006671 509 NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQE 588 (636)
Q Consensus 509 n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~ 588 (636)
|+||.+||++|++++||+|+||||||+|++|+++|++|||+|+||+++|||||++|||||+||+++++|++|||++||++
T Consensus 331 n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~ 410 (454)
T PTZ00079 331 NEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLRE 410 (454)
T ss_pred ccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q 006671 589 AMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLTIAQAMTDQGCV 636 (636)
Q Consensus 589 ~m~~~~~~v~~~A~~~~~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 636 (636)
+|.++|++|+++|++++. ..+||.||||+||.|||+||++||+|
T Consensus 411 ~M~~~~~~~~~~a~~~~~----~~~~r~~A~i~~~~rva~Am~~~G~~ 454 (454)
T PTZ00079 411 IMKSIFEACVKYAEKYGG----KSDLVAGANIAGFLKVADSMIEQGCV 454 (454)
T ss_pred HHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999963 23899999999999999999999986
No 2
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-133 Score=1082.16 Aligned_cols=438 Identities=42% Similarity=0.800 Sum_probs=426.4
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHhCccchH--HHHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEecC
Q 006671 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (636)
Q Consensus 193 ~~~~~~~~~~~~p~~~ef~q~v~e~~~~~~~~l~~~p~y~~--i~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqhs~ 270 (636)
++++++.+.+++|+|+||+|++++++++++++|+.+|+|.. ++++|++|+|+|+|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~ 82 (445)
T PRK14030 3 IEKIMTSLEAKHPGESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNN 82 (445)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecC
Confidence 56889999999999999999999999999999999999985 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEecCCCHHHHHHHHHHhhhhhccCCCCCCCceEEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccC
Q 006671 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (636)
Q Consensus 271 alGPakGGlRfhp~v~~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~r~~r~f~~eL~~~IGp~~DVpA 350 (636)
++|||||||||||+++++|+++||++|||||||++||||||||||++||+.+|+.|+|||||+|+++|.+||||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpA 162 (445)
T PRK14030 83 AIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPA 162 (445)
T ss_pred cccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHH
Q 006671 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (636)
Q Consensus 351 ~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~ 430 (636)
|||||+++||+||+|+|+++.++++|++||||+.+|||.+|++||||||++++++++++.|.+++|+||+||||||||++
T Consensus 163 pDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~ 242 (445)
T PRK14030 163 GDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWG 242 (445)
T ss_pred cccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCc-cccccccCCceeeCCCCccccccceEecCCCcC
Q 006671 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL-RDYSKTYARSKYYDEAKPWNERCDVAFPCASQN 509 (636)
Q Consensus 431 aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l-~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n 509 (636)
+|++|++.|+|||+|||++|+||||+|||++++..|+++|+..+++ ..|.+.||++++++++++|+++||||+|||++|
T Consensus 243 aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n 322 (445)
T PRK14030 243 AATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQN 322 (445)
T ss_pred HHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccc
Confidence 9999999999999999999999999999999988888999888776 445556789999999999999999999999999
Q ss_pred ccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhccccCCCCCCHHHHHHHHHHH
Q 006671 510 EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEA 589 (636)
Q Consensus 510 ~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~ 589 (636)
+||.+||++|++++||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|++||+++
T Consensus 323 ~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~ 402 (445)
T PRK14030 323 ELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQI 402 (445)
T ss_pred cCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q 006671 590 MKQTYQRALKAATDFG--YQKESPEALVHGAVISSFLTIAQAMTDQGCV 636 (636)
Q Consensus 590 m~~~~~~v~~~A~~~~--~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 636 (636)
|.++|+++++.+++++ + +||+|||++||+||++||..||+|
T Consensus 403 m~~~~~~v~~~~~~~~~~~------~lr~aA~~~a~~rva~a~~~rG~~ 445 (445)
T PRK14030 403 MSGIHEQCVKYGKEGDGYI------NYVKGANIAGFMKVAKAMLAQGVV 445 (445)
T ss_pred HHHHHHHHHHHhhccCCCC------CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999988 6 899999999999999999999986
No 3
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-130 Score=1059.28 Aligned_cols=437 Identities=43% Similarity=0.804 Sum_probs=421.7
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHhCccch--HHHHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEecC
Q 006671 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYV--NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (636)
Q Consensus 193 ~~~~~~~~~~~~p~~~ef~q~v~e~~~~~~~~l~~~p~y~--~i~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqhs~ 270 (636)
.+++++.+++|+|+|+||+|+|+|+++++.|+|+++|+|. +++++|++|+|+|+|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~ 82 (444)
T PRK14031 3 AAKVLEDLKRRFPNEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNN 82 (444)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecC
Confidence 3678999999999999999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEecCCCHHHHHHHHHHhhhhhccCCCCCCCceEEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccC
Q 006671 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (636)
Q Consensus 271 alGPakGGlRfhp~v~~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~r~~r~f~~eL~~~IGp~~DVpA 350 (636)
++||+||||||||+++++|+++||++|||||||++||||||||||++||+++|+.|+|||||+|+++|.++|||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipA 162 (444)
T PRK14031 83 AIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPA 162 (444)
T ss_pred CCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHH
Q 006671 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (636)
Q Consensus 351 ~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~ 430 (636)
|||||+++||+||+|+|++++++..|++||||+.+|||.+|++||||||+++++++++++|.+|+|+||+||||||||++
T Consensus 163 pDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~ 242 (444)
T PRK14031 163 GDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQY 242 (444)
T ss_pred cccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhh-cCCccccccccCCceeeCCCCccccccceEecCCCcC
Q 006671 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ-QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQN 509 (636)
Q Consensus 431 aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~-~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n 509 (636)
+|++|++.|+|||+|||++|+||||+|||+++|..+.++|.. ++++.+|...+ ++++++++++|+.+||||+|||++|
T Consensus 243 aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~-ga~~i~~d~~~~~~cDIliPaAl~n 321 (444)
T PRK14031 243 TAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKY-GCKYVEGARPWGEKGDIALPSATQN 321 (444)
T ss_pred HHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhc-CCEEcCCcccccCCCcEEeeccccc
Confidence 999999999999999999999999999999998767777766 56788775444 6888999999999999999999999
Q ss_pred ccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhccccCCCCCCHHHHHHHHHHH
Q 006671 510 EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEA 589 (636)
Q Consensus 510 ~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~ 589 (636)
+||.+||++|...+|++|+||||+|+|++|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|++||+++
T Consensus 322 ~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~ 401 (444)
T PRK14031 322 ELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSI 401 (444)
T ss_pred ccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHH
Confidence 99999999997777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q 006671 590 MKQTYQRALKAATDF--GYQKESPEALVHGAVISSFLTIAQAMTDQGCV 636 (636)
Q Consensus 590 m~~~~~~v~~~A~~~--~~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 636 (636)
|.++|+.+++.++++ ++ +||+|||++||.||++||..||+|
T Consensus 402 m~~~~~~v~~~~~~~~~~~------~~r~aA~~~a~~rva~a~~~~G~~ 444 (444)
T PRK14031 402 MKNIHEACVQYGTEADGYV------NYVKGANVAGFMKVAKAMMAQGIV 444 (444)
T ss_pred HHHHHHHHHHHHhccCCCC------CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999988 45 899999999999999999999986
No 4
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-127 Score=1018.34 Aligned_cols=410 Identities=39% Similarity=0.652 Sum_probs=394.5
Q ss_pred CccHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeEEecCCC
Q 006671 207 EIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMN 286 (636)
Q Consensus 207 ~~ef~q~v~e~~~~~~~~l~~~p~y~~i~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~v~ 286 (636)
+++|.|++.++..++.+.. ..+ .++|+|++|+|+++|++||+||+|++++|+|||||||+++||||||+||||+||
T Consensus 1 ~~~~~~a~~~~~~~~~~~~-~~~---~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~ 76 (411)
T COG0334 1 ENEFEQAVKELEKALEPLY-LDE---GVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVT 76 (411)
T ss_pred CcHHHHHHHHHHHhhhhcc-Cch---hHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCC
Confidence 4689999999999988832 222 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCceEEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHH
Q 006671 287 LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQ 366 (636)
Q Consensus 287 ~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~ 366 (636)
++++++|++||||||||++||||||||||++||+.+|+.|+|||||+|+++|.++|||++|||||||||++++|+||+++
T Consensus 77 ~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~de 156 (411)
T COG0334 77 LEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDE 156 (411)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCC-CccccCcccccCCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006671 367 YRRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 367 y~~l~g~~-~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaV 445 (636)
|++++|.. +|++||||+++|||.+|++||||||+++++++++.++.+|+|+||+||||||||+++|++|++.|||||++
T Consensus 157 y~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~ 236 (411)
T COG0334 157 YSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAV 236 (411)
T ss_pred hhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEE
Confidence 99999765 79999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCce
Q 006671 446 SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCR 525 (636)
Q Consensus 446 SDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~ak 525 (636)
||++|+||||+|||+++|. +.|+..+++.+| +++++++++++|+++||||+|||++|+||++||++| +||
T Consensus 237 sds~g~i~~~~Gld~~~l~---~~~~~~~~v~~~----~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l---~ak 306 (411)
T COG0334 237 SDSKGGIYDEDGLDVEALL---ELKERRGSVAEY----AGAEYITNEELLEVDCDILIPCALENVITEDNADQL---KAK 306 (411)
T ss_pred EcCCCceecCCCCCHHHHH---HHhhhhhhHHhh----cCceEccccccccccCcEEcccccccccchhhHHHh---hhc
Confidence 9999999999999999974 666666777776 679999999999999999999999999999999999 999
Q ss_pred EEEeCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 006671 526 ILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFG 605 (636)
Q Consensus 526 iVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~ 605 (636)
+|+||||||+|++|+++|.+|||+|+||+++|||||++|||||+||+++++|++|||++||+.+|.++|+.+++.+++++
T Consensus 307 ~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~ 386 (411)
T COG0334 307 IVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYG 386 (411)
T ss_pred EEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q 006671 606 YQKESPEALVHGAVISSFLTIAQAMTDQGCV 636 (636)
Q Consensus 606 ~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 636 (636)
+ ++++|||++|++||++||++||++
T Consensus 387 ~------~~r~aA~~~a~~Rva~Am~~~G~~ 411 (411)
T COG0334 387 V------DLRTAAYILAFERVADAMKARGWY 411 (411)
T ss_pred C------CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8 899999999999999999999985
No 5
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-124 Score=1014.53 Aligned_cols=438 Identities=50% Similarity=0.911 Sum_probs=421.3
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHhCccchH--HHHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEe
Q 006671 191 KTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQF 268 (636)
Q Consensus 191 ~~~~~~~~~~~~~~p~~~ef~q~v~e~~~~~~~~l~~~p~y~~--i~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqh 268 (636)
.+++++++.+.+|+|+|+||+|++++++++++++|+.+|+|.. ++++|++|+|+|+|++||+||+|++++|+||||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h 84 (445)
T PRK09414 5 EYLESVLEQVKKRNPGQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQF 84 (445)
T ss_pred HHHHHHHHHHHhhCcCCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEe
Confidence 3678999999999999999999999999999999999999985 99999999999999999999999999999999999
Q ss_pred cCCCCCCCCCeEEecCCCHHHHHHHHHHhhhhhccCCCCCCCceEEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcc
Q 006671 269 SQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDL 348 (636)
Q Consensus 269 s~alGPakGGlRfhp~v~~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~r~~r~f~~eL~~~IGp~~DV 348 (636)
|+++||+||||||||+++++|+++||++|||||||++||||||||||++||+.+|+.|+|||||+|+++|.++|||++||
T Consensus 85 ~~~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~Di 164 (445)
T PRK09414 85 NSAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDV 164 (445)
T ss_pred cCCCcCCCCceeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHH
Q 006671 349 PSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIA 428 (636)
Q Consensus 349 pA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG 428 (636)
||||+||+++||+||+++|++++++..|++||||+.+|||.+|.++|||||++++++++++.+.+++|+||+||||||||
T Consensus 165 papDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG 244 (445)
T PRK09414 165 PAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVA 244 (445)
T ss_pred CccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhc-CCccccccccCCceeeCCCCccccccceEecCCC
Q 006671 429 MHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS 507 (636)
Q Consensus 429 ~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~-g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~ 507 (636)
+++|++|.+.|+|||+|||++|+||||+|||+++| .++|+.+ +++..|...+ ++++++++++|+++||||+|||+
T Consensus 245 ~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L---~~~k~~~~~~l~~~~~~~-~~~~i~~~~i~~~d~DVliPaAl 320 (445)
T PRK09414 245 IYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKL---KEIKEVRRGRISEYAEEF-GAEYLEGGSPWSVPCDIALPCAT 320 (445)
T ss_pred HHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH---HHHHHhcCCchhhhhhhc-CCeecCCccccccCCcEEEecCC
Confidence 99999999999999999999999999999999885 5667665 5788774333 67889999999999999999999
Q ss_pred cCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhccccCCCCCCHHHHHHHHH
Q 006671 508 QNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQ 587 (636)
Q Consensus 508 ~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~ 587 (636)
+|+||++||.+|++++||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+
T Consensus 321 ~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~ 400 (445)
T PRK09414 321 QNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLH 400 (445)
T ss_pred cCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCC
Q 006671 588 EAMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLTIAQAMTDQGCV 636 (636)
Q Consensus 588 ~~m~~~~~~v~~~A~~~~~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~~ 636 (636)
++|.++|.++++.+++++. +.++|+|||++||+||++||..||++
T Consensus 401 ~~m~~~~~~~~~~~~~~~~----~~~~r~aA~~~a~~rv~~a~~~rG~~ 445 (445)
T PRK09414 401 DIMKNIHHACVETAEEYGK----PGNYVAGANIAGFVKVADAMLAQGVI 445 (445)
T ss_pred HHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999982 12899999999999999999999986
No 6
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=2.5e-120 Score=978.53 Aligned_cols=408 Identities=28% Similarity=0.467 Sum_probs=397.5
Q ss_pred cHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeEEecCCCHH
Q 006671 209 EFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLS 288 (636)
Q Consensus 209 ef~q~v~e~~~~~~~~l~~~p~y~~i~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~v~~~ 288 (636)
.+++.+++.++.++++++.+|. +++.|++|+|+|+|+|||+||+|++++|+|||||||+++||+||||||||++|++
T Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~---~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ 78 (410)
T PLN02477 2 NALAATNRNFREAARLLGLDSK---LEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPD 78 (410)
T ss_pred CHHHHHHHHHHHHHHHcCCCHH---HHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHH
Confidence 4688999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCceEEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHHhh
Q 006671 289 IAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYR 368 (636)
Q Consensus 289 evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~y~ 368 (636)
|+++||++|||||||++||||||||||++||+.+|+.|++|+||+|+++|.++|||.+||||||+||+++||+||+++|+
T Consensus 79 ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~ 158 (410)
T PLN02477 79 EVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYS 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCccccCcccccCCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 369 RLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 369 ~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++.|+++|++||||+.+|||.+|+++|||||+++++++++++|.+++|+||+||||||||+++|++|.++|+|||+|||+
T Consensus 159 ~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 159 KFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred HhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEE
Q 006671 449 KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILV 528 (636)
Q Consensus 449 ~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVv 528 (636)
+|+||||+|||+++| .++|.+++++.+| |+++.++++++|..+||||+|||++|+||++||++| +||+|+
T Consensus 239 ~G~iy~~~GLD~~~L---~~~k~~~g~l~~~----~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i---~ak~I~ 308 (410)
T PLN02477 239 TGAVKNENGLDIPAL---RKHVAEGGGLKGF----PGGDPIDPDDILVEPCDVLIPAALGGVINKENAADV---KAKFIV 308 (410)
T ss_pred CCeEECCCCCCHHHH---HHHHHhcCchhcc----ccceEecCccceeccccEEeeccccccCCHhHHHHc---CCcEEE
Confidence 999999999999875 5677778888776 688899999999999999999999999999999999 999999
Q ss_pred eCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 006671 529 EGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQK 608 (636)
Q Consensus 529 EgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~ 608 (636)
||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|++++|+++|+++|.++|.++++.|+++++
T Consensus 309 egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~-- 386 (410)
T PLN02477 309 EAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNC-- 386 (410)
T ss_pred eCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHhcCC
Q 006671 609 ESPEALVHGAVISSFLTIAQAMTDQGC 635 (636)
Q Consensus 609 ~~~~~~~~aA~i~a~~rVa~Am~~~G~ 635 (636)
++++|||++|++||++||..||+
T Consensus 387 ----~~r~aA~~~a~~rv~~a~~~rG~ 409 (410)
T PLN02477 387 ----SLRMGAFTLGVNRVARATVLRGW 409 (410)
T ss_pred ----CHHHHHHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999996
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-116 Score=936.68 Aligned_cols=461 Identities=43% Similarity=0.703 Sum_probs=425.8
Q ss_pred hhhhhHHHHHHHHhhccchhhhcccchhHHHHhhhhHHHHHHHHHhhCCCCccHHHHHHHHHHH--HHHHHHhCccchHH
Q 006671 157 HNNSLLHKEALRLQMASKDKIIADKPIYVKALMSKTAGSIVEAALKRDPHEIEFIQSVQESLHA--LERVIAKNSHYVNI 234 (636)
Q Consensus 157 h~~~~~h~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~ef~q~v~e~~~~--~~~~l~~~p~y~~i 234 (636)
|.++++|++|++++.+.+++ ...|.|++.+++.+ +|.+++|.|+..|.+.+ ....++++|.|..|
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~--~~~p~~~~~v~~~~-----------~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~I 67 (514)
T KOG2250|consen 1 HTLFLLFAAAHQYHNSTKDM--ADSPTFLKMVESMY-----------APAAIEFQQALAEDVLSLELSSKFEKSPLYTAI 67 (514)
T ss_pred CchHHHHHHHHHhhhccccc--ccChHHHHHHHhhc-----------cccchhhhhhhHHHHhcchhhhhhhhhhHhhhh
Confidence 56789999999999999998 88998887664432 38899999999999999 78999999999999
Q ss_pred HHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeEEecCCCHHHHHHHHHHhhhhhccCCCCCCCceEE
Q 006671 235 MERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGG 314 (636)
Q Consensus 235 ~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~v~~~evkaLA~~MT~KnAL~gLP~GGaKGG 314 (636)
+.+|..|+|+++|++||.+|+|+.+|++|||||||.++||+||||||||+||+|++++||+.||||||++++|+||||||
T Consensus 68 l~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGG 147 (514)
T KOG2250|consen 68 LFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGG 147 (514)
T ss_pred hhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCc
Q 006671 315 SDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEA 394 (636)
Q Consensus 315 I~~DP~~~S~~El~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eA 394 (636)
|.+||+++|+.|++|+||+||++|.++|||++|||||||||++|||+|++++|+++.|++.+++||||+.||||++|++|
T Consensus 148 i~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~A 227 (514)
T KOG2250|consen 148 ILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEA 227 (514)
T ss_pred cccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhC--CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhh
Q 006671 395 TGYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g--~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~ 472 (636)
|||||+++++.++++++ .+++|+||+||||||||++++++|++.|+|||+|||++|+|+||+|||.++|. +++.+
T Consensus 228 TG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~---~~~~~ 304 (514)
T KOG2250|consen 228 TGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELL---DLADE 304 (514)
T ss_pred cchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHH---HHHHh
Confidence 99999999999999998 89999999999999999999999999999999999999999999999999975 45556
Q ss_pred cCCcccccc---ccCCceeeCCC--CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCC
Q 006671 473 QRSLRDYSK---TYARSKYYDEA--KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKAN 547 (636)
Q Consensus 473 ~g~l~~y~~---~~p~a~~i~~~--eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rG 547 (636)
++++++|.. .+++ ++-.. .+|..+||||+|||+||+||.+||.+|++.+||+|+||||||+||||+++|+++|
T Consensus 305 k~~i~~f~~~~~~~~~--~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~g 382 (514)
T KOG2250|consen 305 KKTIKSFDGAKLSYEG--YIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAG 382 (514)
T ss_pred hccccccccccccCcc--ccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCC
Confidence 666666521 1222 22222 4557799999999999999999999999999999999999999999999999999
Q ss_pred ceEecccccccccceeecchhccccC-------CCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHcC--CCCCCCccH
Q 006671 548 VLIAPAMAAGAGGVVAGELELNQECN-------MVHWSPEDFESKLQEAMKQTYQRA----LKAATDFG--YQKESPEAL 614 (636)
Q Consensus 548 IlviPD~~aNAGGVivS~~E~~qN~~-------~~~ws~eeV~~rL~~~m~~~~~~v----~~~A~~~~--~~~~~~~~~ 614 (636)
|+++||+.||+|||+||||||+||++ .+.|++|.|+..|.++|...+... ++.+++++ .....+.++
T Consensus 383 v~i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 462 (514)
T KOG2250|consen 383 VLIIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFKDRIQGTSEKDL 462 (514)
T ss_pred eEEechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhhhhhcCCCchHH
Confidence 99999999999999999999999999 678999999999999999999888 77776655 222346699
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 006671 615 VHGAVISSFLTIAQAMTDQGC 635 (636)
Q Consensus 615 ~~aA~i~a~~rVa~Am~~~G~ 635 (636)
+.+|++++|.|||+||..+|.
T Consensus 463 v~gal~~~~~kva~ai~~~g~ 483 (514)
T KOG2250|consen 463 VHGALIATFNKVARAITDQGD 483 (514)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=6.2e-73 Score=652.01 Aligned_cols=367 Identities=17% Similarity=0.215 Sum_probs=331.8
Q ss_pred HHHHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeEEecC-----------CCHHHHHHHHHHhhhhh
Q 006671 233 NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPS-----------MNLSIAKFLGFEQTLKN 301 (636)
Q Consensus 233 ~i~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~-----------v~~~evkaLA~~MT~Kn 301 (636)
.+++.|..|++.+.+.+|+ | ..|+|||++|+.+ +||||||||+ ++.+|+.+||++||+||
T Consensus 464 ~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tqt~KN 534 (1002)
T PTZ00324 464 SFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKN 534 (1002)
T ss_pred HHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHHHHhc
Confidence 4788899999999999988 5 6799999999999 9999999998 88999999999999999
Q ss_pred ccCCCCCCCceEEEeCCCCCCCH---HHHHHHHHHHHHHHHhhcCCCCcc-----------cCCCCCCChhHHHHHHHHh
Q 006671 302 ALSPYKLGGAAGGSDFDPKGKSD---NEIMRFCQSFMNEIHRYLGPDKDL-----------PSEEMGVGTREMGYLFGQY 367 (636)
Q Consensus 302 AL~gLP~GGaKGGI~~DP~~~S~---~El~r~~r~f~~eL~~~IGp~~DV-----------pA~DiGt~~rem~~m~~~y 367 (636)
| +||+|||||||.+||+..++ .|++|++++|+++|.++|||+.|| ||||+||+++.|+|+ ++|
T Consensus 535 a--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdwa-~~~ 611 (1002)
T PTZ00324 535 K--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDWA-ALH 611 (1002)
T ss_pred C--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHHH-HHH
Confidence 8 99999999999999998887 899999999999999999999999 999999999999999 999
Q ss_pred hhhhCCC--CccccCcccccCCCCCCC-CcchhHHHHHHHHHHHHhCCCCCCcEEEEec--CccHHHHHHHHHHHCCCEE
Q 006671 368 RRLAGHF--QGSFTGPRIFWSGSSLRT-EATGYGLVFFAQLILADMNKELKGLRCVVSG--SGKIAMHVLEKLIAYGAIP 442 (636)
Q Consensus 368 ~~l~g~~--~g~vTGKp~~~GGs~~r~-eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG--fGNVG~~aAe~L~e~GAkV 442 (636)
++.+|+. .+++||||..+||+.++. ++||+||+++++++++++|.++++.||++|| |||||+++++++. +||
T Consensus 612 s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~---~kl 688 (1002)
T PTZ00324 612 AKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK---EKT 688 (1002)
T ss_pred HHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC---CEE
Confidence 9999986 699999999999999987 9999999999999999999999999999999 9999999998864 799
Q ss_pred EEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccc------c-----------CCceee-----CCCCc---ccc
Q 006671 443 VSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT------Y-----------ARSKYY-----DEAKP---WNE 497 (636)
Q Consensus 443 VaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~------~-----------p~a~~i-----~~~ei---l~~ 497 (636)
|||+|.+|++|||+|||+++|.++ +..++++.+|... | |+.+.+ ..+++ +..
T Consensus 689 VAv~D~~G~~~DP~GLd~~EL~rl---~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~~~~ 765 (1002)
T PTZ00324 689 VGIVDGSGVLHDPEGLNREELRRL---AHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLPYS 765 (1002)
T ss_pred EEEEcCCCEEECCCCCCHHHHHHH---HHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhccccCC
Confidence 999999999999999999997544 4557778766421 1 222222 22333 468
Q ss_pred ccceEecCCC-cCccchhhHHHhh-----hcCceEEEeCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhccc
Q 006671 498 RCDVAFPCAS-QNEIDQSDAINLV-----NSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQE 571 (636)
Q Consensus 498 ~cDIliPcA~-~n~It~enA~~l~-----~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN 571 (636)
+||||+|||. ++.||++||..++ +.+||+|+||||+|+||+|+.+|+++||+++||+++|+|||++||+||+||
T Consensus 766 ~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~Evl~~ 845 (1002)
T PTZ00324 766 DADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSLEVLAA 845 (1002)
T ss_pred CccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHHHHHhc
Confidence 9999999998 9999999994432 139999999999999999999999999999999999999999999999999
Q ss_pred cC------------------CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHH
Q 006671 572 CN------------------MVHWS--PEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVISSF 623 (636)
Q Consensus 572 ~~------------------~~~ws--~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~~~~~~~aA~i~a~ 623 (636)
++ ..+|+ .+||.++|+++|...|+.+++.+++.++ +++++|+.+..
T Consensus 846 l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~------~~r~asd~lS~ 911 (1002)
T PTZ00324 846 LALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGK------PRCLLADVLSR 911 (1002)
T ss_pred cccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CHHHHHHHHHH
Confidence 99 78899 8999999999999999999999998888 79999998764
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=4.6e-72 Score=570.79 Aligned_cols=253 Identities=46% Similarity=0.837 Sum_probs=243.1
Q ss_pred cCcccccCCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCC
Q 006671 379 TGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGF 458 (636)
Q Consensus 379 TGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGL 458 (636)
||||+.+|||.+|++||||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|+||||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCC-ccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCH
Q 006671 459 DYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTP 537 (636)
Q Consensus 459 Dve~L~~L~~~k~~~g~-l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~ 537 (636)
|+++|..+.+++..+++ +.+|...+|++++++++++|+.+||||+|||++|+||.+||++|.+++||+|+||||+|+||
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~ 160 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA 160 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence 99999888888877665 67887677789999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHCCceEecccccccccceeecchhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccHHHH
Q 006671 538 EAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHG 617 (636)
Q Consensus 538 eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~~~~~~~a 617 (636)
+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.+++++. +.++|+|
T Consensus 161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~----~~~lr~a 236 (254)
T cd05313 161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGD----PPDLVAG 236 (254)
T ss_pred HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999993 1289999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 006671 618 AVISSFLTIAQAMTDQGC 635 (636)
Q Consensus 618 A~i~a~~rVa~Am~~~G~ 635 (636)
||++||+||++||..||+
T Consensus 237 A~~~a~~rv~~a~~~rG~ 254 (254)
T cd05313 237 ANIAGFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999999996
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=8.4e-62 Score=493.68 Aligned_cols=240 Identities=35% Similarity=0.587 Sum_probs=221.6
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHhCCC-CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHH
Q 006671 386 SGSSLRTEATGYGLVFFAQLILADMNKE-LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (636)
Q Consensus 386 GGs~~r~eATG~GV~~~~~~~l~~~g~~-l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~ 464 (636)
|||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|++.|++||+|||++|+||||+|||+++|
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l- 79 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEEL- 79 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHH-
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHH-
Confidence 7999999999999999999999998754 99999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHhhcCC-ccccccccC-CceeeCCC-CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHH
Q 006671 465 FLRDIKSQQRS-LRDYSKTYA-RSKYYDEA-KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVD 541 (636)
Q Consensus 465 ~L~~~k~~~g~-l~~y~~~~p-~a~~i~~~-eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~ 541 (636)
.++++..+. +..|....+ ++++++++ ++|+++||||+|||++|+||.+||++.++.+||+||||||+|+||+|++
T Consensus 80 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~ 157 (244)
T PF00208_consen 80 --LRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE 157 (244)
T ss_dssp --HHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH
T ss_pred --HHHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH
Confidence 556777776 888744333 57888884 8999999999999999999999999455666999999999999999999
Q ss_pred HHHHCCceEecccccccccceeecchhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 006671 542 VLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVIS 621 (636)
Q Consensus 542 iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~~~~~~~aA~i~ 621 (636)
+|++|||+|+||+++|+||||+||+||+||+++++|++++|.++++++|.++++++++.|+++++ +++++|+++
T Consensus 158 ~L~~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~------~~~~aA~~~ 231 (244)
T PF00208_consen 158 ILRERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGI------SLRQAAYIL 231 (244)
T ss_dssp HHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SHHHHHHHH
T ss_pred HHHHCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred HHHHHHHHHHhcC
Q 006671 622 SFLTIAQAMTDQG 634 (636)
Q Consensus 622 a~~rVa~Am~~~G 634 (636)
|++||++||+.||
T Consensus 232 A~~rv~~a~~~rG 244 (244)
T PF00208_consen 232 AFERVAAAMKLRG 244 (244)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999998
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=9.8e-58 Score=459.36 Aligned_cols=227 Identities=29% Similarity=0.482 Sum_probs=217.5
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHH
Q 006671 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (636)
Q Consensus 386 GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~ 465 (636)
|||.+|+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|++||+|+|++|++|||+|||+++|
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l-- 78 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPAL-- 78 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHH--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHhhcCCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHH
Q 006671 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK 545 (636)
Q Consensus 466 L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~ 545 (636)
.++++..+++..| +++++++++++|..+||||+|||++|+||+++|++| +|++|+||||+|+||+|+++|++
T Consensus 79 -~~~~~~~g~l~~~----~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l---~a~~I~egAN~~~t~~a~~~L~~ 150 (227)
T cd01076 79 -LAYKKEHGSVLGF----PGAERITNEELLELDCDILIPAALENQITADNADRI---KAKIIVEAANGPTTPEADEILHE 150 (227)
T ss_pred -HHHHHhcCCcccC----CCceecCCccceeecccEEEecCccCccCHHHHhhc---eeeEEEeCCCCCCCHHHHHHHHH
Confidence 5667777888776 667888999999999999999999999999999999 99999999999999999999999
Q ss_pred CCceEecccccccccceeecchhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHH
Q 006671 546 ANVLIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLT 625 (636)
Q Consensus 546 rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~~~~~~~aA~i~a~~r 625 (636)
|||+|+||+++|||||++||+||.||++++.|++++|.+++++.|.+++.++++.|+++++ +++.+|+++|++|
T Consensus 151 rGi~~~PD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~------~~~~aA~~~a~~r 224 (227)
T cd01076 151 RGVLVVPDILANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGV------DLRTAAYVLALER 224 (227)
T ss_pred CCCEEEChHHhcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc------CHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred HHH
Q 006671 626 IAQ 628 (636)
Q Consensus 626 Va~ 628 (636)
|++
T Consensus 225 l~~ 227 (227)
T cd01076 225 VAE 227 (227)
T ss_pred hhC
Confidence 963
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=3.1e-57 Score=453.08 Aligned_cols=217 Identities=28% Similarity=0.458 Sum_probs=205.4
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhc
Q 006671 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (636)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~ 473 (636)
||||||++++++++++++.+++|+||+||||||||+++|++|.++|+++|+|||++|++||| |||++++ .+++...
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l---~~~~~~~ 76 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEEL---INYAVAL 76 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHH---HHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999 9999885 3445555
Q ss_pred CCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecc
Q 006671 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPA 553 (636)
Q Consensus 474 g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD 553 (636)
+++..| |.+++++++++|..+||||+|||++|+||+++|.++ +||+|+||||+|+|++++++|++|||+|+||
T Consensus 77 ~~~~~~----~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l---~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 77 GGSARV----KVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKL---KAKVVAEGANNPTTDEALRILHERGIVVAPD 149 (217)
T ss_pred CCcccc----CcccccCcccceeccccEEeeccccCccChhhHhhc---CccEEEeCCCCCCCHHHHHHHHHCCcEEECh
Confidence 666554 556778889999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cccccccceeecchhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHH
Q 006671 554 MAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLTIA 627 (636)
Q Consensus 554 ~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~~~~~~~aA~i~a~~rVa 627 (636)
+++|+|||++|||||+||.++++|++++|+++|++.|.+++.++++.|+++++ ++++|||++|++|||
T Consensus 150 ~~~NaGGvi~s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~------~~r~aA~~~a~~rva 217 (217)
T cd05211 150 IVANAGGVIVSYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGV------TMRAAANILAFERIA 217 (217)
T ss_pred HHhcCCCeEeEHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc------CHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998 899999999999986
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=2e-44 Score=335.51 Aligned_cols=131 Identities=41% Similarity=0.716 Sum_probs=125.1
Q ss_pred CCeEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeEEecCCCHHHHHHHHHHhhhhhccCCCCCCCceEEEeCCCC
Q 006671 241 PERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPK 320 (636)
Q Consensus 241 Per~i~f~vp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~v~~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~ 320 (636)
|||+++|++||++|+|....++|||||||+++||+||||||||++|.+|+++||++|||||||++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHHhhhhh
Q 006671 321 GKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLA 371 (636)
Q Consensus 321 ~~S~~El~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~y~~l~ 371 (636)
++|..|+++++|+|+++|.++||+++|||||||||+++||+||+++|++++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~t 131 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRVT 131 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhcC
Confidence 999999999999999999999999999999999999999999999999874
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=1.1e-40 Score=329.23 Aligned_cols=195 Identities=21% Similarity=0.276 Sum_probs=174.8
Q ss_pred CCcchhHHHHHHHHHHHHh--CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHH
Q 006671 392 TEATGYGLVFFAQLILADM--NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~--g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~ 469 (636)
+.+|||||+++++++++++ +.+++|++|+|||||+||+++|+.|.+.|++|+ ++|.+ .+++. ++
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~---~~ 67 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVA---RA 67 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHH---HH
Confidence 4699999999999999996 789999999999999999999999999999987 88863 33332 22
Q ss_pred HhhcCCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCC-HHHHHHHHHCCc
Q 006671 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT-PEAVDVLKKANV 548 (636)
Q Consensus 470 k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T-~eA~~iL~~rGI 548 (636)
++ . + +++.++.++++..+|||++|||++++||.+++++| +|++|+||||+|+| ++++++|+++||
T Consensus 68 ~~------~----~-g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l---~~~~v~~~AN~~~~~~~~~~~L~~~Gi 133 (200)
T cd01075 68 AE------L----F-GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQL---KAKAIAGAANNQLADPRHGQMLHERGI 133 (200)
T ss_pred HH------H----c-CCEEEcchhhccccCCEEEecccccccCHHHHHHc---CCCEEEECCcCccCCHhHHHHHHHCCC
Confidence 22 1 1 45667778899899999999999999999999999 99999999999999 999999999999
Q ss_pred eEecccccccccceeecchhccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHH
Q 006671 549 LIAPAMAAGAGGVVAGELELNQECNMVHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESPEALVHGAVISSFLTIA 627 (636)
Q Consensus 549 lviPD~~aNAGGVivS~~E~~qN~~~~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~~~~~~~aA~i~a~~rVa 627 (636)
+|+||+++|+|||++||+||+||. ++++.++++.+ .+++.++++.|+++++ +++++|+.+|.+||+
T Consensus 134 ~~~Pd~~~NaGGv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~------~~~~aA~~~a~~r~~ 199 (200)
T cd01075 134 LYAPDYVVNAGGLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGI------TTLEAADRMAEERIA 199 (200)
T ss_pred EEeCceeeeCcCceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCc------CHHHHHHHHHHHHhc
Confidence 999999999999999999999864 67999999766 8899999999999999 899999999999986
No 15
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.96 E-value=9.4e-29 Score=221.21 Aligned_cols=100 Identities=40% Similarity=0.685 Sum_probs=96.3
Q ss_pred cceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhccccCCCCCC
Q 006671 499 CDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELNQECNMVHWS 578 (636)
Q Consensus 499 cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~~~ws 578 (636)
||||+|||++++||.++|++| +||+|+||||+|+|++|+++|++|||+|+||+++|+|||++||+||.||.++ +
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l---~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~ 76 (102)
T smart00839 3 CDIFIPCALQNVINEANANRL---GAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---T 76 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---C
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999874 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006671 579 PEDFESKLQEAMKQTYQRALKAATDF 604 (636)
Q Consensus 579 ~eeV~~rL~~~m~~~~~~v~~~A~~~ 604 (636)
+|+|.+++.+.|.+++.++++.|+++
T Consensus 77 ~e~v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 77 AEEVFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998753
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.91 E-value=7.2e-24 Score=247.94 Aligned_cols=307 Identities=20% Similarity=0.228 Sum_probs=227.0
Q ss_pred CCeEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeEEecCCCH---HHHHHHHHHhhhhhccCCCCCCCceEEEeC
Q 006671 241 PERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNL---SIAKFLGFEQTLKNALSPYKLGGAAGGSDF 317 (636)
Q Consensus 241 Per~i~f~vp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfhp~v~~---~evkaLA~~MT~KnAL~gLP~GGaKGGI~~ 317 (636)
|-++|.|.=| + ++|+...|-.+ ++|||||+ +-+. .|+..|+..|..|||+ ||=+|||||+..
T Consensus 774 Py~eIFVyg~------~---vEGvHLRFg~V---ARGGLRws-DR~~D~rtEvlgLvKAQqvKNav--IvpvGAKGgf~~ 838 (1592)
T COG2902 774 PYREIFVYGP------E---VEGVHLRFGPV---ARGGLRWS-DRNQDFRTEVLGLVKAQQVKNAV--IVPVGAKGGFLL 838 (1592)
T ss_pred cceEEEEEcC------c---ceEEEeecccc---cccccccc-ccchhHHHHHHHHHHHHHhcCCc--ccccCCcceEec
Confidence 4466666533 2 37888888776 99999998 4443 7999999999999985 566899999998
Q ss_pred C--CCCCCHHHHH----HHHHHHHHHHHhh---cCCC---------------C-cccCCCCCCC-hhHHHHHHHHhhhhh
Q 006671 318 D--PKGKSDNEIM----RFCQSFMNEIHRY---LGPD---------------K-DLPSEEMGVG-TREMGYLFGQYRRLA 371 (636)
Q Consensus 318 D--P~~~S~~El~----r~~r~f~~eL~~~---IGp~---------------~-DVpA~DiGt~-~rem~~m~~~y~~l~ 371 (636)
. |.+-++.|++ +.++.|++.|... |..+ - -|.|+|-||- -.|++ ..-.+
T Consensus 839 k~lp~g~~RD~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAtFsD~A---N~vA~-- 913 (1592)
T COG2902 839 KRLPTGGDRDAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTATFSDIA---NSVAR-- 913 (1592)
T ss_pred ccCCCCCchHHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcccHHHHH---HHHHH--
Confidence 7 5677888875 4677888888642 2111 1 1568888873 12222 11111
Q ss_pred CCCCccccCcccccCCCCCCC----CcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHH--HHHHHCCCEEEEE
Q 006671 372 GHFQGSFTGPRIFWSGSSLRT----EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVL--EKLIAYGAIPVSV 445 (636)
Q Consensus 372 g~~~g~vTGKp~~~GGs~~r~----eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aA--e~L~e~GAkVVaV 445 (636)
..|++-|+.+..|||.|.+ +.|++|++.+++..++.+|.++....+.++|.|.+.+-+- ..|...--+.||+
T Consensus 914 --~~~fwl~DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgNgMLLS~~irLiAA 991 (1592)
T COG2902 914 --EYGFWLGDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNGMLLSKHIRLIAA 991 (1592)
T ss_pred --HhCCChhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCccccccceeccccceeeEE
Confidence 2367888999999998753 7999999999999999999999999999998644433222 4566667789999
Q ss_pred eCCCCceeCC-CCCCHHHHHHHHHHHhhcCCccccccc--cCCcee------------------------eCCCC-----
Q 006671 446 SDAKGYLVDE-DGFDYMKISFLRDIKSQQRSLRDYSKT--YARSKY------------------------YDEAK----- 493 (636)
Q Consensus 446 SDs~G~Iydp-dGLDve~L~~L~~~k~~~g~l~~y~~~--~p~a~~------------------------i~~~e----- 493 (636)
-|.++.++|| -++|...+++.+..+..+.++.+|..+ .+|.-. .++.+
T Consensus 992 fDhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAI 1071 (1592)
T COG2902 992 FDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAI 1071 (1592)
T ss_pred ecCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccChHHHHHHH
Confidence 9999999999 467776665544455677789888643 111111 11111
Q ss_pred -------ccccccceEecCCCc-CccchhhHHHhh-----hcCceEEEeCCCCCCCHHHHHHHHHCCceEeccccccccc
Q 006671 494 -------PWNERCDVAFPCASQ-NEIDQSDAINLV-----NSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGG 560 (636)
Q Consensus 494 -------il~~~cDIliPcA~~-n~It~enA~~l~-----~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGG 560 (636)
+|.-..|.+|||..+ |.+..++|...+ +.+||+|+||||..+|+.++-.|.++|..+.-|+++|+||
T Consensus 1072 LKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaG 1151 (1592)
T COG2902 1072 LKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAG 1151 (1592)
T ss_pred HcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCC
Confidence 133346777999985 777777777665 3489999999999999999999999999999999999999
Q ss_pred ceeecchhc
Q 006671 561 VVAGELELN 569 (636)
Q Consensus 561 VivS~~E~~ 569 (636)
|.+|.+|..
T Consensus 1152 Vd~SD~EVn 1160 (1592)
T COG2902 1152 VDCSDHEVN 1160 (1592)
T ss_pred Ccccchhhh
Confidence 999999973
No 17
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.89 E-value=5.8e-22 Score=239.88 Aligned_cols=352 Identities=16% Similarity=0.193 Sum_probs=248.7
Q ss_pred EEEEEEEecCCCCCCCCCeEEecCCC--HHHHHHHHHHhhhhhccCCCCCCCceEEEeCCCCCC--CHHH----HHHHHH
Q 006671 261 NRGFRVQFSQALGPCRGGLRFHPSMN--LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGK--SDNE----IMRFCQ 332 (636)
Q Consensus 261 ~rGyRVqhs~alGPakGGlRfhp~v~--~~evkaLA~~MT~KnAL~gLP~GGaKGGI~~DP~~~--S~~E----l~r~~r 332 (636)
|.|+.+.+..+ ++|||||+.... ..|+..|+..|..|||+ ||=||||||+.++.... ++++ ....++
T Consensus 723 ~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKNav--Ivp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~ 797 (1528)
T PF05088_consen 723 FEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKNAV--IVPVGSKGGFVVKQLPDPADRDAWQAEGIACYK 797 (1528)
T ss_pred eEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcCCc--ccCCCCceeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 47888888887 999999964432 48999999999999975 57799999999874332 5553 456789
Q ss_pred HHHHHHHhh---------c---------CCCCc-ccCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCC-
Q 006671 333 SFMNEIHRY---------L---------GPDKD-LPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRT- 392 (636)
Q Consensus 333 ~f~~eL~~~---------I---------Gp~~D-VpA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~- 392 (636)
.|++.|.+. + |+|-| |.|.|-|| ..+.-++.+.+.- .|+|-|..+..|||.|..
T Consensus 798 ~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGT--AtfSD~AN~ia~~----~gfWLgDAFASGGS~GYDH 871 (1528)
T PF05088_consen 798 TFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGT--ATFSDIANEIAAE----YGFWLGDAFASGGSAGYDH 871 (1528)
T ss_pred HHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCc--chHHHHHHHHHHH----cCCCcchhhhcCCcCCCCc
Confidence 999999764 2 23333 66888888 3444444443332 367889999999999864
Q ss_pred ---CcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHH--HHHHHCCCEEEEEeCCCCceeCCCCCCHHH----H
Q 006671 393 ---EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVL--EKLIAYGAIPVSVSDAKGYLVDEDGFDYMK----I 463 (636)
Q Consensus 393 ---eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aA--e~L~e~GAkVVaVSDs~G~IydpdGLDve~----L 463 (636)
+.|++|++.+++..++++|.|+....+.|+|.|.+++-+. -.|...-.|.||--|.....+||+. |++. -
T Consensus 872 K~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P-D~~~Sf~ER 950 (1528)
T PF05088_consen 872 KKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP-DPAASFAER 950 (1528)
T ss_pred hhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhcccceeEEEecCcceeecCcCC-ChhhhHHHH
Confidence 7999999999999999999999999999999888777554 5677888999999999999999998 6543 2
Q ss_pred HHHHHHHhhcCCccccccc--------cC-Cce-----------------eeCCCC----ccccccceEecCCCcCcc--
Q 006671 464 SFLRDIKSQQRSLRDYSKT--------YA-RSK-----------------YYDEAK----PWNERCDVAFPCASQNEI-- 511 (636)
Q Consensus 464 ~~L~~~k~~~g~l~~y~~~--------~p-~a~-----------------~i~~~e----il~~~cDIliPcA~~n~I-- 511 (636)
.+|+++ .+.++.+|... |+ .++ .+++++ ++..|+|+|--..++.-|
T Consensus 951 ~RLF~l--prSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGGIGTYVKa 1028 (1528)
T PF05088_consen 951 KRLFEL--PRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGGIGTYVKA 1028 (1528)
T ss_pred HHHhcC--CCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCCccceEec
Confidence 223221 33478888643 11 112 223333 456799999776665332
Q ss_pred ----c-----------hhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecccccccccceeecchhc-----cc
Q 006671 512 ----D-----------QSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVVAGELELN-----QE 571 (636)
Q Consensus 512 ----t-----------~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~aNAGGVivS~~E~~-----qN 571 (636)
| .-|+..| +||+|+||+|..+|+.++-.+..+|..+-.|++-|||||-+|.+|.- ..
T Consensus 1029 s~Es~~~vgDkaND~vRV~g~~l---rakVvgEGgNLG~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEVNiKIll~~ 1105 (1528)
T PF05088_consen 1029 STESHADVGDKANDAVRVNGSEL---RAKVVGEGGNLGLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEVNIKILLNS 1105 (1528)
T ss_pred CCCcccccccccCcceeechHHc---eEEEEecccccccchHHHHHHHHcCCccchhhhcccCCCcCccchhhHHHHHHH
Confidence 1 1345555 99999999999999999999999999999999999999999999971 11
Q ss_pred c-CCCCCCHHHHHHHHHHHHHHHH-HHHHH----HHHHcCCCCCCCccHHHHHHHHHHHHHHHHHHhcCC
Q 006671 572 C-NMVHWSPEDFESKLQEAMKQTY-QRALK----AATDFGYQKESPEALVHGAVISSFLTIAQAMTDQGC 635 (636)
Q Consensus 572 ~-~~~~ws~eeV~~rL~~~m~~~~-~~v~~----~A~~~~~~~~~~~~~~~aA~i~a~~rVa~Am~~~G~ 635 (636)
. ..-..+.++=++-|. .|.+-+ +.|+. ......+ ...+.+.++--+.|+.+.+..+|.
T Consensus 1106 ~~~~g~lt~~~Rn~lL~-~mtdeV~~lVL~~N~~Q~~alsl-----~~~~~~~~~~~~~r~~~~Le~~g~ 1169 (1528)
T PF05088_consen 1106 LVRAGDLTRKERNKLLA-SMTDEVAELVLRDNYRQTLALSL-----AERRAAERLEEHQRLIERLEREGR 1169 (1528)
T ss_pred HHHcCCCCHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHH-----HHHhhhccHHHHHHHHHHHHhcCC
Confidence 0 011236666565553 344333 22321 1111111 023455566777788887777764
No 18
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.07 E-value=3.4e-10 Score=120.88 Aligned_cols=182 Identities=18% Similarity=0.277 Sum_probs=116.2
Q ss_pred cEEEEecCccHHHHHHHHHHH--------CC--CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIA--------YG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e--------~G--AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a 486 (636)
.+|+|+||||||+++++.|.+ .| .+|++|+|++|++|||+|+|++++ .++++..+.+..|...+ +.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l---~~~~~~~~~~~~~~~~~-~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREA---KEVKENFGKLSNWGNDY-EV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHH---HHhhhccCchhhccccc-cc
Confidence 589999999999999999987 46 799999999999999999999875 56667767666552111 11
Q ss_pred eeeCCCCcc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCC-CC--C-HHHHHHHHHCCceEecccccccccc
Q 006671 487 KYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM-PC--T-PEAVDVLKKANVLIAPAMAAGAGGV 561 (636)
Q Consensus 487 ~~i~~~eil-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~-P~--T-~eA~~iL~~rGIlviPD~~aNAGGV 561 (636)
..++.++++ +.+|||+|.|+... ...+...+.++.++.+| -||- |+ + .+..++-+++|+.+. +-+|.||-
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~~G~~VV--tanK~~la~~~~el~~la~~~~~~~~--~ea~v~~G 153 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALKEGKSVV--TSNKPPIAFHYDELLDLANERNLPYL--FEATVMAG 153 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHhhCCcEE--ECCHHHHHhCHHHHHHHHHHcCCeEE--Eecccccc
Confidence 223445566 57999999887432 23334444456788888 4663 33 2 334455567888877 55655532
Q ss_pred eeecchhccccC---------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006671 562 VAGELELNQECN---------M-VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 610 (636)
Q Consensus 562 ivS~~E~~qN~~---------~-~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~ 610 (636)
+= -+..+++.. + +.=|-.-+..+++ -...|.+++..|++.|..+..
T Consensus 154 iP-ii~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~--~g~~f~eal~eAq~~GyaE~D 209 (336)
T PRK08374 154 TP-IIGLLRENLLGDTVKRIEAVVNATTTFILTRME--QGKTFEEALKEAQTLGIAERD 209 (336)
T ss_pred CC-chHHHHhhccccceEEEEEEEechHHHHHHHhh--CCCCHHHHHHHHHHcCCCCCC
Confidence 21 112222210 0 0011223444553 245689999999999986543
No 19
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.03 E-value=8.1e-10 Score=117.74 Aligned_cols=179 Identities=19% Similarity=0.207 Sum_probs=112.3
Q ss_pred EEEEecCccHHHHHHHHHHH--------CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee
Q 006671 418 RCVVSGSGKIAMHVLEKLIA--------YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e--------~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i 489 (636)
+|+|+||||||+.+++.|.+ .+.+||+|+|++|++++|+|||++++ .+++.. +.+..| + .+.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l---~~~~~~-g~l~~~----~-~~~~ 72 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKI---ISYKEK-GRLEEI----D-YEKI 72 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHH---HHHHhc-CccccC----C-CCcC
Confidence 79999999999999999987 46899999999999999999999885 344443 555443 1 1112
Q ss_pred CCCCccccccceEecCCCcCccchhh----HHHhhhcCceEEEeCCC-CCCC---HHHHHHHHHCCceEecccccccccc
Q 006671 490 DEAKPWNERCDVAFPCASQNEIDQSD----AINLVNSGCRILVEGSN-MPCT---PEAVDVLKKANVLIAPAMAAGAGGV 561 (636)
Q Consensus 490 ~~~eil~~~cDIliPcA~~n~It~en----A~~l~~~~akiVvEgAN-~P~T---~eA~~iL~~rGIlviPD~~aNAGGV 561 (636)
+.++++..++||+|.|+..+. +.+. ....++.|+.+| -|| .|+. ++-.+..+++|+.+.-.-..-+|=-
T Consensus 73 ~~~~ll~~~~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVV--TaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 73 KFDEIFEIKPDVIVDVTPASK-DGIREKNLYINAFEHGIDVV--TANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred CHHHHhcCCCCEEEECCCCCC-cCchHHHHHHHHHHCCCEEE--cCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 334556679999999997542 3222 234457799999 688 5543 3344555678888884432222222
Q ss_pred eeecchhcc--c-cCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006671 562 VAGELELNQ--E-CNM----VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 610 (636)
Q Consensus 562 ivS~~E~~q--N-~~~----~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~ 610 (636)
+...+.... | ..+ +.=|-.-+..+++ -...|.+++..|++.|..+..
T Consensus 150 ii~~~~~~~~g~~i~~i~GilnGT~nyIl~~m~--~g~~f~~al~eAq~lG~aE~D 203 (326)
T PRK06392 150 LFSLRDYSTLPSRIKNFRGIVSSTINYVIRQEA--NGRGFLDVVKIAQKMGIAETN 203 (326)
T ss_pred hhhhhhhhcccCCEEEEEEEEeChHHHHHhhcc--CCCCHHHHHHHHHHcCCCCCC
Confidence 222221100 0 000 0011122444443 255689999999999986543
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.59 E-value=2.4e-07 Score=99.24 Aligned_cols=182 Identities=20% Similarity=0.282 Sum_probs=110.3
Q ss_pred cEEEEecCccHHHHHHHHHHHC----------CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~----------GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a 486 (636)
.+|+|.|+|+||+.+++.|.+. +.+||+|+|+++.+|+|+|+|.+++ .+.+...+.+..| ++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~---~~~~~~~~~~~~~----~~~ 75 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA---LKVKEETGKLADY----PEG 75 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH---HHHHhccCCcccC----ccc
Confidence 4799999999999999998765 6899999999999999999998775 3344444444433 211
Q ss_pred e-eeCCCCcc-ccccceEecCCCcCccc----hhhHHHhhhcCceEEEeCCC-CCCC---HHHHHHHHHCCceEeccccc
Q 006671 487 K-YYDEAKPW-NERCDVAFPCASQNEID----QSDAINLVNSGCRILVEGSN-MPCT---PEAVDVLKKANVLIAPAMAA 556 (636)
Q Consensus 487 ~-~i~~~eil-~~~cDIliPcA~~n~It----~enA~~l~~~~akiVvEgAN-~P~T---~eA~~iL~~rGIlviPD~~a 556 (636)
. ..+.++++ +.++||++.|+..+.-+ .+.+...++.|+.+|+ +| .|++ ++-.+..+++|+.+. +-+
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt--aNK~pla~~~~eL~~~A~~~g~~~~--~ea 151 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT--SNKGPLALAYKELKELAKKNGVRFR--YEA 151 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc--CCcHHHHhhHHHHHHHHHHcCCEEE--Eee
Confidence 1 11223444 45799999999866544 3444455678999996 44 3432 344455567888776 322
Q ss_pred ccc-cc-eeecc-hhccc--cCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006671 557 GAG-GV-VAGEL-ELNQE--CNM----VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 610 (636)
Q Consensus 557 NAG-GV-ivS~~-E~~qN--~~~----~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~ 610 (636)
..| |+ +...+ +.+.. ... +.=+-.-+..++. .-...|.+++..|++.|..+..
T Consensus 152 ~v~~glPii~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~-~~g~~f~~al~~Aq~~G~aE~D 213 (341)
T PRK06270 152 TVGGAMPIINLAKETLAGNDIKSIKGILNGTTNYILTRME-EEGLSYEQALAEAQELGYAEAD 213 (341)
T ss_pred eeeechhHHHHHHhhcccCceEEEEEEEeCcHHHHHHHHh-hcCCCHHHHHHHHHHcCCCCCC
Confidence 222 22 11111 11000 000 0011122333441 1135689999999999986543
No 21
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.55 E-value=5.8e-07 Score=77.60 Aligned_cols=55 Identities=31% Similarity=0.337 Sum_probs=48.9
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+||+|++.++++..+..+.+++++++.|+|+|++|+.+++.|.+.|.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999988889999999999999999999999999986555666664
No 22
>PLN02700 homoserine dehydrogenase family protein
Probab=98.17 E-value=1.5e-05 Score=86.83 Aligned_cols=187 Identities=21% Similarity=0.263 Sum_probs=112.8
Q ss_pred cEEEEecCccHHHHHHHHHHHC-------C--CEEEEEeCCCCceeCCC----CCCHHHHHHHHHHHhhcCCcccccc--
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY-------G--AIPVSVSDAKGYLVDED----GFDYMKISFLRDIKSQQRSLRDYSK-- 481 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~-------G--AkVVaVSDs~G~Iydpd----GLDve~L~~L~~~k~~~g~l~~y~~-- 481 (636)
..|+|.|+||||+.+++.|.+. | .+|++|+||+|++++++ |||.+.+......+.+...+..|..
T Consensus 4 i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~~~ 83 (377)
T PLN02700 4 IPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGALA 83 (377)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhhcc
Confidence 4789999999999999887653 3 58999999999999975 9998876443334444444443310
Q ss_pred ccCC--------ceeeCCCCcc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC-CCC--CHHHHHHHHHCCce
Q 006671 482 TYAR--------SKYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN-MPC--TPEAVDVLKKANVL 549 (636)
Q Consensus 482 ~~p~--------a~~i~~~eil-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN-~P~--T~eA~~iL~~rGIl 549 (636)
..++ .+.++..+.+ ..+.+|+|.|... .-+.+.....++.|+.+| .|| .+. ..+--..|+++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s-~~~~~~y~~aL~~G~hVV--TaNK~~~a~~~~~~~~la~~~~~ 160 (377)
T PLN02700 84 GGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSAS-METIGALNEAVDLGCCIV--LANKKPLTSTLEDYDKLAAHPRR 160 (377)
T ss_pred ccccccccccccchhhhHHHHhhccCCCEEEECCCC-hHHHHHHHHHHHCCCeEE--cCCchHhccCHHHHHHHHHcCCe
Confidence 0000 0011111122 4457999999986 333555666678899999 688 443 33344667788988
Q ss_pred Eecccccccccce--eecch-hcc---ccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006671 550 IAPAMAAGAGGVV--AGELE-LNQ---ECNM----VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 610 (636)
Q Consensus 550 viPD~~aNAGGVi--vS~~E-~~q---N~~~----~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~ 610 (636)
+. |-++.||-+ .+.+. .+. +..+ +.=|-.-+..+++ -...|.+++..|++.|..+..
T Consensus 161 ~~--yEatVgaGlPiI~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~--~g~~fseal~eAq~~GyaEpD 227 (377)
T PLN02700 161 IR--HESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSELE--DGKPFSEVVKQAKSLGYTEPD 227 (377)
T ss_pred EE--EEeeeeeccchHHHHHHHhhccCCEEEEEEEEeChHHHHHHHHh--cCCCHHHHHHHHHHcCCCCCC
Confidence 88 445555322 22221 110 0000 0112233455553 245689999999999986543
No 23
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.06 E-value=1.4e-05 Score=86.26 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=107.6
Q ss_pred cEEEEecCccHHHHHHHHHHHC----------CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~----------GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a 486 (636)
.+|+|.|||+||+.+++.|.+. ..+|++|+|+++.+++++|+|.+++ .+.+.....+.+|..
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~---l~~~~~~~~~~~~~~----- 74 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHL---LRYGGGSCAIEKYIE----- 74 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhh---hhccccccchhhhhc-----
Confidence 5799999999999999998753 2579999999999999999998763 221111111111110
Q ss_pred eeeCCCCcc--ccccceEecCCCcCccchhhHHHh----hhcCceEEEeCCC-CCCC---HHHHHHHHHCCceEeccccc
Q 006671 487 KYYDEAKPW--NERCDVAFPCASQNEIDQSDAINL----VNSGCRILVEGSN-MPCT---PEAVDVLKKANVLIAPAMAA 556 (636)
Q Consensus 487 ~~i~~~eil--~~~cDIliPcA~~n~It~enA~~l----~~~~akiVvEgAN-~P~T---~eA~~iL~~rGIlviPD~~a 556 (636)
...+++. ..+.||+|.|...+..+.+.|..+ +++|+.+| .|| .|++ +|-.+.-+++|+.+. |-+
T Consensus 75 --~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVV--TANK~~la~~~~eL~~lA~~~g~~~~--yEa 148 (346)
T PRK06813 75 --HHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIV--AISKGALVTNWREINEAAKIANVRIR--YSG 148 (346)
T ss_pred --cChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEE--cCCcHHHhccHHHHHHHHHHcCCeEE--Eee
Confidence 0111222 237899999988776676666555 46899999 788 3433 344455678899888 444
Q ss_pred ccccce--eecchhccccCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 006671 557 GAGGVV--AGELELNQECNMV-------HWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 611 (636)
Q Consensus 557 NAGGVi--vS~~E~~qN~~~~-------~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~~ 611 (636)
+.||-+ ...+....--..+ .=|-.-+..++. .-...|.+++..|++.|..+..|
T Consensus 149 sVggGiPiI~~l~~~~~g~~I~~i~GIlNGT~NyIL~~m~-~~g~~f~eal~~Aq~lGyaE~DP 211 (346)
T PRK06813 149 ATAAALPTLDIGQFSLAGCHIEKIEGILNGTTNYILTKMN-EEDITFEEALKEAQSKGIAETNP 211 (346)
T ss_pred eeeeccchHHHHhhhcccCcEEEEEEEEechHHHHHhhhh-hcCCCHHHHHHHHHHcCCCCCCC
Confidence 444322 2222110000000 011112323321 01336899999999999865433
No 24
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.83 E-value=9.1e-05 Score=88.12 Aligned_cols=192 Identities=15% Similarity=0.168 Sum_probs=111.7
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHC---------CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhh
Q 006671 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY---------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (636)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~---------GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~ 472 (636)
+++.+-+.+-.+-+-.+|+|.|||+||+.+++.|.+. ..+|++|+|+++.+++|+|+|.+.+... ...
T Consensus 451 al~~LH~~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~---~~~ 527 (819)
T PRK09436 451 ALRACHQSFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREE---LAE 527 (819)
T ss_pred HHHHHHHHHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHH---Hhh
Confidence 3333333333344677899999999999999998753 3579999999999999999998764211 111
Q ss_pred cCCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC-CCCC------HHHHHHHHH
Q 006671 473 QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN-MPCT------PEAVDVLKK 545 (636)
Q Consensus 473 ~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN-~P~T------~eA~~iL~~ 545 (636)
. ...+ ....+++-..-...+.||+|.|.....+... ....++.|+.+| .|| .+.+ ++-.+..++
T Consensus 528 ~--~~~~----~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~-~~~al~~g~~VV--taNK~~~a~~~~~~~el~~~a~~ 598 (819)
T PRK09436 528 A--GEPF----DLDRLIRLVKEYHLLNPVIVDCTSSQAVADQ-YADFLAAGFHVV--TPNKKANTSSYAYYHQLREAARK 598 (819)
T ss_pred c--cCCC----CHHHHHHHHhhcCCCCCEEEECCCChHHHHH-HHHHHHcCCEEE--cCCchhccCCHHHHHHHHHHHHH
Confidence 1 0111 0000111000123477999999987665433 445567899999 799 4444 334455678
Q ss_pred CCceEecccccccccceeecchhccccC-------C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006671 546 ANVLIAPAMAAGAGGVVAGELELNQECN-------M----VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 610 (636)
Q Consensus 546 rGIlviPD~~aNAGGVivS~~E~~qN~~-------~----~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~ 610 (636)
+|+.+. |-++.||-+= -+..+++.. + +.=|-.-+..+++ -...|.+++..|++.|..+..
T Consensus 599 ~~~~~~--yeatV~~giP-ii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~--~g~~f~~al~~Aq~~GyaE~D 669 (819)
T PRK09436 599 SRRKFL--YETNVGAGLP-VIETLQNLLNAGDELLKFEGILSGSLSFIFGKLD--EGMSFSEATRLAKEKGYTEPD 669 (819)
T ss_pred cCCeEE--Eeeeeccccc-hHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhh--cCCCHHHHHHHHHHcCCCCCC
Confidence 899888 4454443221 011111110 0 0011122333332 234688889999999986543
No 25
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.50 E-value=0.00048 Score=67.28 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=56.5
Q ss_pred hHHHHHHHH-HHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCC
Q 006671 397 YGLVFFAQL-ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (636)
Q Consensus 397 ~GV~~~~~~-~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~ 475 (636)
||+-.++-. +++..+..|.||+++|.|||+||+.+|+.|..+|++ |.|+|. || -.+ +...
T Consensus 3 yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~-----DP-----i~a--lqA~------ 63 (162)
T PF00670_consen 3 YGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEI-----DP-----IRA--LQAA------ 63 (162)
T ss_dssp HHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-S-----SH-----HHH--HHHH------
T ss_pred cccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEEC-----Ch-----HHH--HHhh------
Confidence 455444333 334457889999999999999999999999999999 689886 43 221 2211
Q ss_pred ccccccccCCceeeCCCCccccccceEecCCCc-CccchhhHHHhhhcCceE
Q 006671 476 LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRI 526 (636)
Q Consensus 476 l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~-n~It~enA~~l~~~~aki 526 (636)
...| +..+-++.. ..+||+|-|+.. ++|+.+.-.++ +++|-+
T Consensus 64 ~dGf-------~v~~~~~a~-~~adi~vtaTG~~~vi~~e~~~~m-kdgail 106 (162)
T PF00670_consen 64 MDGF-------EVMTLEEAL-RDADIFVTATGNKDVITGEHFRQM-KDGAIL 106 (162)
T ss_dssp HTT--------EEE-HHHHT-TT-SEEEE-SSSSSSB-HHHHHHS--TTEEE
T ss_pred hcCc-------EecCHHHHH-hhCCEEEECCCCccccCHHHHHHh-cCCeEE
Confidence 1122 111111222 378999887653 67899988887 445544
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.48 E-value=0.0034 Score=58.54 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=76.1
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc
Q 006671 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK 481 (636)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~ 481 (636)
++..++++.+.+++++++.|.|.|++|..+++.|.+.|...|.+.|. + .+.+..+.+...... +
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r-----~-----~~~~~~~~~~~~~~~-~----- 68 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR-----T-----LEKAKALAERFGELG-I----- 68 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC-----C-----HHHHHHHHHHHhhcc-c-----
Confidence 44555556677789999999999999999999999987555677776 2 222211111100000 0
Q ss_pred ccCCceeeCCCCccccccceEecCCCcCccchhh----HHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecc
Q 006671 482 TYARSKYYDEAKPWNERCDVAFPCASQNEIDQSD----AINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPA 553 (636)
Q Consensus 482 ~~p~a~~i~~~eil~~~cDIliPcA~~n~It~en----A~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD 553 (636)
.....+..+. -.++|++|-|......+.+. ...+ . .-++|..-+-.|...+..+.++++|+.++|.
T Consensus 69 ---~~~~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~-~-~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g 138 (155)
T cd01065 69 ---AIAYLDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLL-K-PGGVVYDVVYNPLETPLLKEARALGAKTIDG 138 (155)
T ss_pred ---ceeecchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHc-C-CCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence 0011111122 24799999998776541111 1112 2 3345666654553337778889999888764
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.41 E-value=0.0012 Score=69.60 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=84.7
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHh
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~ 471 (636)
...|+.|++. .+++..+.++.|++|.|.|+|.+|+.+|+.|...|++| .+.|.+ + +++..+ ..
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V-~v~~R~-----~-----~~~~~~---~~ 192 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARV-FVGARS-----S-----ADLARI---TE 192 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEE-EEEeCC-----H-----HHHHHH---HH
Confidence 3566777643 44455667999999999999999999999999999984 566652 1 222111 11
Q ss_pred hcCCccccccccCCceeeCCCCc--cccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCc
Q 006671 472 QQRSLRDYSKTYARSKYYDEAKP--WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANV 548 (636)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~ei--l~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI 548 (636)
. +.+.++-+++ +-.++||+|-|..-..++.+....+ + .-.+|+.-|..| -|+- +..+++|+
T Consensus 193 ~------------g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~-k-~~aliIDlas~Pg~tdf--~~Ak~~G~ 256 (287)
T TIGR02853 193 M------------GLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKL-P-KHAVIIDLASKPGGTDF--EYAKKRGI 256 (287)
T ss_pred C------------CCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcC-C-CCeEEEEeCcCCCCCCH--HHHHHCCC
Confidence 0 1111111111 1238999999987777787665555 2 235777777777 3433 56789998
Q ss_pred eEe-----ccccc
Q 006671 549 LIA-----PAMAA 556 (636)
Q Consensus 549 lvi-----PD~~a 556 (636)
..+ |.+++
T Consensus 257 ~a~~~~glPg~~a 269 (287)
T TIGR02853 257 KALLAPGLPGIVA 269 (287)
T ss_pred EEEEeCCCCcccC
Confidence 665 55553
No 28
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.31 E-value=0.00092 Score=79.60 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=107.7
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHC--------C--CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHh
Q 006671 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY--------G--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (636)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~--------G--AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~ 471 (636)
+++.+-+.+-.+-+-.+++|.||||||+.+++.|.+. | .+|++|+|+++.+++++|+|...+... ..
T Consensus 444 av~~LH~~f~~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~---~~ 520 (810)
T PRK09466 444 LIQGLHQSLFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAF---FD 520 (810)
T ss_pred HHHHHHHHHhCcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhh---HH
Confidence 3333333333333556899999999999999998763 3 578999999999999999997764211 11
Q ss_pred hcCCccccccccCCce-eeCCCCcc--ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCC-CC---H---HHHH
Q 006671 472 QQRSLRDYSKTYARSK-YYDEAKPW--NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CT---P---EAVD 541 (636)
Q Consensus 472 ~~g~l~~y~~~~p~a~-~i~~~eil--~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T---~---eA~~ 541 (636)
... ..+ ... .+ +.+- +.+.+|++.|.....+... ....++.|+.+| .||=. .+ . +-.+
T Consensus 521 ~~~--~~~-----~~~~~~--e~i~~~~~~~~vvVd~t~~~~~~~~-~~~aL~~G~~VV--taNK~~~a~~~~~~~~l~~ 588 (810)
T PRK09466 521 DEA--VEW-----DEESLF--LWLRAHPYDELVVLDVTASEQLALQ-YPDFASHGFHVI--SANKLAGSSPSNFYRQIKD 588 (810)
T ss_pred hhc--CCc-----cHHHHH--HHHhhcCCCCcEEEECCCChHHHHH-HHHHHHcCCEEE--cCCcccccccHHHHHHHHH
Confidence 110 011 100 00 0011 2234699999976654332 224457789998 78842 22 1 2234
Q ss_pred HHHHCCceEecccccccccceeecchhccccCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006671 542 VLKKANVLIAPAMAAGAGGVVAGELELNQECNM-----------VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 610 (636)
Q Consensus 542 iL~~rGIlviPD~~aNAGGVivS~~E~~qN~~~-----------~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~ 610 (636)
.-+++|+.+. |=++.||-+=. +..++++.. +.=|-.-+..++++ ...|.+++..|++.|..+..
T Consensus 589 ~a~~~~~~~~--yEasV~~giPi-i~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~GyaE~D 663 (810)
T PRK09466 589 AFAKTGRHWL--YNATVGAGLPI-NHTVRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGLTEPD 663 (810)
T ss_pred HHHHcCCeEE--EeceeeeccCh-HHHHHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCCCCCC
Confidence 4568899888 44554443321 122222110 00011113333322 45688999999999986543
No 29
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.15 E-value=0.0023 Score=67.65 Aligned_cols=127 Identities=15% Similarity=0.187 Sum_probs=75.7
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHh
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~ 471 (636)
+.+|+.| ++.++++..+.++.|++|.|.|+|.+|+.++..|..+|++ |.+.|.+ .+++..+.
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~----------~~~~~~~~---- 192 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGAN-VTVGARK----------SAHLARIT---- 192 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECC----------HHHHHHHH----
Confidence 4567777 4445667677889999999999999999999999999997 5666652 12221111
Q ss_pred hcCCccccccccCCceeeCCCCc--cccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCc
Q 006671 472 QQRSLRDYSKTYARSKYYDEAKP--WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANV 548 (636)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~ei--l~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI 548 (636)
.. +++++.-+++ +-.++||+|-|+....++++....+ +.++ +|+.-|..| -|.- +.-+++||
T Consensus 193 ~~-----------G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~-~~g~-vIIDla~~pggtd~--~~a~~~Gv 257 (296)
T PRK08306 193 EM-----------GLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKM-PPEA-LIIDLASKPGGTDF--EYAEKRGI 257 (296)
T ss_pred Hc-----------CCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcC-CCCc-EEEEEccCCCCcCe--eehhhCCe
Confidence 11 1222211111 1137899998876666666554444 2233 444444444 2221 23356777
Q ss_pred eEe
Q 006671 549 LIA 551 (636)
Q Consensus 549 lvi 551 (636)
.++
T Consensus 258 ~~~ 260 (296)
T PRK08306 258 KAL 260 (296)
T ss_pred EEE
Confidence 665
No 30
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.04 E-value=0.01 Score=60.48 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=86.7
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCE--EEEEeCCCCceeCCCC--CCHHHHHHHHHHH
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDEDG--FDYMKISFLRDIK 470 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAk--VVaVSDs~G~IydpdG--LDve~L~~L~~~k 470 (636)
||-=+..++..+++..+.+++++||+|.|.|.+|..+|..|.+.|.+ -|.|.|++|-++.... |+..+. .+.
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~----~la 79 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKN----EIA 79 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHH----HHH
Confidence 33334445566777778899999999999999999999999999987 7899999987766543 322211 111
Q ss_pred hhcCCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCC-CHHHHHHHHHCCc-
Q 006671 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC-TPEAVDVLKKANV- 548 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~-T~eA~~iL~~rGI- 548 (636)
...+. . ... .+-.+.+ .++||+|=|+..+.++.+..+.+. .-.+|..-. +|+ |+-. +..++.|.
T Consensus 80 ~~~~~-~-------~~~-~~l~~~l-~~~dvlIgaT~~G~~~~~~l~~m~--~~~ivf~ls-nP~~e~~~-~~A~~~ga~ 145 (226)
T cd05311 80 KETNP-E-------KTG-GTLKEAL-KGADVFIGVSRPGVVKKEMIKKMA--KDPIVFALA-NPVPEIWP-EEAKEAGAD 145 (226)
T ss_pred HHhcc-C-------ccc-CCHHHHH-hcCCEEEeCCCCCCCCHHHHHhhC--CCCEEEEeC-CCCCcCCH-HHHHHcCCc
Confidence 11000 0 000 0000112 258999999988889988777663 344666666 553 3222 23334465
Q ss_pred eEec
Q 006671 549 LIAP 552 (636)
Q Consensus 549 lviP 552 (636)
+++.
T Consensus 146 i~a~ 149 (226)
T cd05311 146 IVAT 149 (226)
T ss_pred EEEe
Confidence 3543
No 31
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.96 E-value=0.21 Score=57.39 Aligned_cols=182 Identities=17% Similarity=0.168 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHH
Q 006671 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (636)
Q Consensus 323 S~~El~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~ 402 (636)
+.+|...|...||..+.+.. |..-|-=+|++.. .--.+.+.|+.-.. ++ .+--.-||-=+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~--naf~iL~kyr~~i~----~F----------nDDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNN--HCFDLLERYQNKYR----CF----------NDDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--cHHHHHHHhccCCC----Ee----------cccchhHHHHHHHH
Confidence 67788899999999998766 6677778888753 33346677763211 11 12223466666667
Q ss_pred HHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHH----CCC------EEEEEeCCCCceeCCCC--CCHHHHHHHHHHH
Q 006671 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG--FDYMKISFLRDIK 470 (636)
Q Consensus 403 ~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e----~GA------kVVaVSDs~G~IydpdG--LDve~L~~L~~~k 470 (636)
+..+++-.|.+|+..||++.|.|..|..+|+.|.. .|. +=+-+.|++|-|++..+ ++..+....
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---- 359 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---- 359 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh----
Confidence 88888888999999999999999999999998874 787 55789999999998764 443332111
Q ss_pred hhcCCccccccccCCceeeCCCC-ccccccceEecCCC-cCccchhhHHHhhh-cCceEEEeCCC
Q 006671 471 SQQRSLRDYSKTYARSKYYDEAK-PWNERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSN 532 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~e-il~~~cDIliPcA~-~n~It~enA~~l~~-~~akiVvEgAN 532 (636)
..... .++....+-.+ +-.++.||||=++. .+.+|++-.+.+.+ +.-.||---+|
T Consensus 360 ~~~~~-------~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSN 417 (559)
T PTZ00317 360 RTDIS-------AEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSN 417 (559)
T ss_pred ccccc-------cccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 00000 00000000011 12356699998886 58889888887743 23467776776
No 32
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.90 E-value=0.004 Score=67.19 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=104.2
Q ss_pred CcEEEEecCccHHHHHHHHHHHC----------CCEEEEEeCCCCceeC-CCCCCHHHHHHHHHHHhhcCCccccccccC
Q 006671 416 GLRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVD-EDGFDYMKISFLRDIKSQQRSLRDYSKTYA 484 (636)
Q Consensus 416 GkrVaIqGfGNVG~~aAe~L~e~----------GAkVVaVSDs~G~Iyd-pdGLDve~L~~L~~~k~~~g~l~~y~~~~p 484 (636)
-.+|.|.|||+||+.+++.|.+. ..+|++|+|+++..+. -++.+.+ .+...+.+
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~-------- 67 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAE-------VWTTDGAL-------- 67 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchh-------hheecccc--------
Confidence 35899999999999999999874 3589999999998874 3333321 11111110
Q ss_pred CceeeCCCCccccccceEecCCCcCccchhhHHHh---hhcCceEEEeCCC-CCCCHH---HHHHHHHCCceEecccccc
Q 006671 485 RSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINL---VNSGCRILVEGSN-MPCTPE---AVDVLKKANVLIAPAMAAG 557 (636)
Q Consensus 485 ~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l---~~~~akiVvEgAN-~P~T~e---A~~iL~~rGIlviPD~~aN 557 (636)
. .+.+-++..+.||++++...+.-+.+.+..+ +++|-.+| -|| .|++.. -.+.-+++|+.+. |=|+
T Consensus 68 --~-~~~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVV--TaNK~~lA~~~~el~~~A~~~g~~l~--yEAt 140 (333)
T COG0460 68 --S-LGDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVV--TANKALLALHYHELREAAEKNGVKLL--YEAT 140 (333)
T ss_pred --c-ccHhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEE--CCCchHhHhhHHHHHHHHHHhCCeEE--EEee
Confidence 0 1122345778999999999876666544333 45677777 799 445544 3455577787777 4455
Q ss_pred cccceeecchhccccCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 006671 558 AGGVVAGELELNQECNM----------VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKESP 611 (636)
Q Consensus 558 AGGVivS~~E~~qN~~~----------~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~~ 611 (636)
.||-+=. +..+++.-. +.=|-.-+..|+.+.. ..|+++++.|++.|+.+..|
T Consensus 141 V~gGiPi-I~~lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~~-~~f~dal~eAq~lGyAE~DP 202 (333)
T COG0460 141 VGGGIPI-IKLLRELLAGDEILSIRGILNGTTNYILTRMEEGG-LSFEDALAEAQELGYAEADP 202 (333)
T ss_pred eccCcch-HHHHHhhcccCceEEEEEEEeccHHHHHHHHHccC-CCHHHHHHHHHHcCCCCCCC
Confidence 4443210 122222110 1122344555554321 17899999999999865443
No 33
>PRK12861 malic enzyme; Reviewed
Probab=96.84 E-value=0.026 Score=66.97 Aligned_cols=173 Identities=17% Similarity=0.196 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHHHHHHH
Q 006671 328 MRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLIL 407 (636)
Q Consensus 328 ~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l 407 (636)
..|. .|+..+.+..|. |-=+|++.. .--.+-+.|+.-... |+ ..+--.-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p--~~f~il~~~~~~~~i--------pv----f~DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAP--ECFTVERKLRERMKI--------PV----FHDDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCc--hHHHHHHHHHhcCCC--------Ce----eccccchHHHHHHHHHHHHH
Confidence 3455 777888776654 667888653 444567777752111 11 11222346666667788888
Q ss_pred HHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCE--EEEEeCCCCceeCCCC--CCHHHHHHHHHHHhhcCCcccccccc
Q 006671 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDEDG--FDYMKISFLRDIKSQQRSLRDYSKTY 483 (636)
Q Consensus 408 ~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAk--VVaVSDs~G~IydpdG--LDve~L~~L~~~k~~~g~l~~y~~~~ 483 (636)
+-.|.+|+..||+|.|.|.-|..+++.|...|.+ =+.+.|++|.|+.... ++..+..... ..+.++|.
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~--~~~~~~L~------ 252 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQ--ETDARTLA------ 252 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHh--hcCCCCHH------
Confidence 8889999999999999999999999999999983 3689999999998653 5543321110 00001111
Q ss_pred CCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC-CC-CCHH
Q 006671 484 ARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN-MP-CTPE 538 (636)
Q Consensus 484 p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN-~P-~T~e 538 (636)
+.+. .+||||=++..+.+|++-...+. .-.||---|| -| +|||
T Consensus 253 ---------eai~-~advliG~S~~g~ft~e~v~~Ma--~~PIIFaLsNPtpE~~pe 297 (764)
T PRK12861 253 ---------EVIG-GADVFLGLSAGGVLKAEMLKAMA--ARPLILALANPTPEIFPE 297 (764)
T ss_pred ---------HHHh-cCCEEEEcCCCCCCCHHHHHHhc--cCCEEEECCCCCccCCHH
Confidence 1122 36999999999999999998883 3567777787 23 5665
No 34
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.71 E-value=0.057 Score=59.43 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc
Q 006671 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK 481 (636)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~ 481 (636)
.+-.+.+..+.+|.|+||.|.|+||||+.+|+.|...|.+|++. |.... +.+.
T Consensus 102 ~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~-dp~~~---~~~~----------------------- 154 (378)
T PRK15438 102 SLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLC-DPPRA---DRGD----------------------- 154 (378)
T ss_pred HHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CCccc---cccc-----------------------
Confidence 33344455678999999999999999999999999999998755 43110 0000
Q ss_pred ccCCceeeCCCCccccccceEecCC---------CcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHH-HHHHHCCce-
Q 006671 482 TYARSKYYDEAKPWNERCDVAFPCA---------SQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL- 549 (636)
Q Consensus 482 ~~p~a~~i~~~eil~~~cDIliPcA---------~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGIl- 549 (636)
...+.+-++++ ..|||++-+. +.+.|+++.-..+ +. -.+++-.|=++ +..+|- +.|++..+.
T Consensus 155 ---~~~~~~L~ell-~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~m-k~-gailIN~aRG~vVDe~AL~~aL~~g~~~g 228 (378)
T PRK15438 155 ---EGDFRSLDELV-QEADILTFHTPLFKDGPYKTLHLADEKLIRSL-KP-GAILINACRGAVVDNTALLTCLNEGQKLS 228 (378)
T ss_pred ---ccccCCHHHHH-hhCCEEEEeCCCCCCcccccccccCHHHHhcC-CC-CcEEEECCCchhcCHHHHHHHHHhCCCcE
Confidence 00011112222 2578886333 3455666665555 22 34556666777 455553 666665442
Q ss_pred Eecccccccccceeecchhccc----cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006671 550 IAPAMAAGAGGVVAGELELNQE----CNMVHWSPEDFESKLQEAMKQTYQRAL 598 (636)
Q Consensus 550 viPD~~aNAGGVivS~~E~~qN----~~~~~ws~eeV~~rL~~~m~~~~~~v~ 598 (636)
.+=|..-+=-- .- .++..+ ..|+.|...+...+....+.+.+.+.+
T Consensus 229 a~LDV~e~EP~-~~--~~Ll~~~~i~TPHiAg~s~e~~~~~~~~~~~~l~~~~ 278 (378)
T PRK15438 229 VVLDVWEGEPE-LN--VELLKKVDIGTPHIAGYTLEGKARGTTQVFEAYSKFI 278 (378)
T ss_pred EEEecCCCCCC-Cc--hhhhhcCCEECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence 44555444321 11 122223 266666555555555455555554443
No 35
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.71 E-value=0.0052 Score=68.41 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=69.7
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhh
Q 006671 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (636)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~ 472 (636)
-.||.|++.+++.+ .+..+.|++|+|.|+|++|..+|+.|...|++ |.|+|. ||. +. +...+ .
T Consensus 192 ~gt~~s~~~ai~ra---t~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~-ViV~d~-----dp~-----ra--~~A~~-~ 254 (425)
T PRK05476 192 YGTGESLLDGIKRA---TNVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR-VIVTEV-----DPI-----CA--LQAAM-D 254 (425)
T ss_pred HHHHhhhHHHHHHh---ccCCCCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcC-----Cch-----hh--HHHHh-c
Confidence 44667766555533 25568999999999999999999999999998 566775 332 11 01000 0
Q ss_pred cCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCC-CCCCCHHH
Q 006671 473 QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGS-NMPCTPEA 539 (636)
Q Consensus 473 ~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgA-N~P~T~eA 539 (636)
+.+.++-++++ ..+||+|+|+. .+.|+.+....+ +.++.++.-|- |..+..++
T Consensus 255 ------------G~~v~~l~eal-~~aDVVI~aTG~~~vI~~~~~~~m-K~GailiNvG~~d~Eid~~~ 309 (425)
T PRK05476 255 ------------GFRVMTMEEAA-ELGDIFVTATGNKDVITAEHMEAM-KDGAILANIGHFDNEIDVAA 309 (425)
T ss_pred ------------CCEecCHHHHH-hCCCEEEECCCCHHHHHHHHHhcC-CCCCEEEEcCCCCCccChHH
Confidence 11111112222 27999999874 345665554444 44666554443 44455544
No 36
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.64 E-value=0.025 Score=62.69 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=88.8
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCE--EEEEeCCCCceeCCC-CCCHHHHHHHHHH
Q 006671 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED-GFDYMKISFLRDI 469 (636)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAk--VVaVSDs~G~Iydpd-GLDve~L~~L~~~ 469 (636)
.-||-=+..++-.+|+-.|.+|+..+|++.|.|.-|..++++|...|.+ =|.+.|++|.||+.. -++.........
T Consensus 176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a- 254 (432)
T COG0281 176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKA- 254 (432)
T ss_pred cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHH-
Confidence 3466666778888888889999999999999999999999999999986 688999999999754 221111100000
Q ss_pred HhhcCCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC
Q 006671 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 470 k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (636)
.+..+ . +.. +.-...+|||+=|+..+.+|++-++.+.++ .+|---||
T Consensus 255 ~~~~~---~---------~~~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~--PiIfalaN 301 (432)
T COG0281 255 IEDTG---E---------RTL--DLALAGADVLIGVSGVGAFTEEMVKEMAKH--PIIFALAN 301 (432)
T ss_pred Hhhhc---c---------ccc--cccccCCCEEEEcCCCCCcCHHHHHHhccC--CEEeecCC
Confidence 00100 0 110 113458899999999999999999988543 67777777
No 37
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.63 E-value=0.012 Score=65.23 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCc
Q 006671 397 YGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (636)
Q Consensus 397 ~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l 476 (636)
-++.+++-+.++..-.+|++++|.|.|.|-+|.-+|+.|.+.|.+-|.|+.. +.++...|. .+
T Consensus 159 VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T~erA~~La---~~---- 221 (414)
T COG0373 159 VSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------TLERAEELA---KK---- 221 (414)
T ss_pred cchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHH---HH----
Confidence 3455666666666666799999999999999999999999999888999987 334332221 11
Q ss_pred cccccccCCceeeCCCCcc--ccccceEecC--CCcCccchhhHHHhhhcCce-EEEeCCCCCC
Q 006671 477 RDYSKTYARSKYYDEAKPW--NERCDVAFPC--ASQNEIDQSDAINLVNSGCR-ILVEGSNMPC 535 (636)
Q Consensus 477 ~~y~~~~p~a~~i~~~eil--~~~cDIliPc--A~~n~It~enA~~l~~~~ak-iVvEgAN~P~ 535 (636)
+ ++++++-+++. -.++||+|-| |+..+|+.++.....+.+.+ +|+.=||-+.
T Consensus 222 ------~-~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 222 ------L-GAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred ------h-CCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 1 23333333332 3589999998 78899999998887655555 8999998663
No 38
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.63 E-value=0.006 Score=68.69 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=65.3
Q ss_pred hhHHHHHH-HHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC
Q 006671 396 GYGLVFFA-QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (636)
Q Consensus 396 G~GV~~~~-~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g 474 (636)
.||+..++ ...++..+..+.|++|.|.|+|+||+.+|+.|...|++| .+.|. ||. .. +... .
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~V-iV~e~-----dp~-----~a--~~A~-~--- 295 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARV-VVTEI-----DPI-----CA--LQAA-M--- 295 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC-----Cch-----hH--HHHH-h---
Confidence 45544433 444555678999999999999999999999999999995 55554 221 10 0000 0
Q ss_pred CccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEE
Q 006671 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILV 528 (636)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVv 528 (636)
.++++.+-++++ ..+||++-|+. .+.|+.+....+ +.+|.+|-
T Consensus 296 ---------~G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~M-KpGAiLIN 339 (476)
T PTZ00075 296 ---------EGYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRM-KNNAIVGN 339 (476)
T ss_pred ---------cCceeccHHHHH-hcCCEEEECCCcccccCHHHHhcc-CCCcEEEE
Confidence 022222212222 37899999864 467777766655 44666653
No 39
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.54 E-value=0.12 Score=59.53 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHH
Q 006671 322 KSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVF 401 (636)
Q Consensus 322 ~S~~El~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~ 401 (636)
.+.+|...|...||..+..-.||..-|-=+|++... ---+.+.|+.- . -++ .+--..||-=+..
T Consensus 243 v~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~~---i-~~F----------nDDiQGTaaV~lA 306 (581)
T PLN03129 243 LTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRTT---H-LCF----------NDDIQGTAAVALA 306 (581)
T ss_pred CchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhccC---C-CEe----------ccccchHHHHHHH
Confidence 356788889999999999989998888889998642 23356677521 1 111 1222456666667
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHH-----CCC------EEEEEeCCCCceeCCCC--CCHHHHHHHHH
Q 006671 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA-----YGA------IPVSVSDAKGYLVDEDG--FDYMKISFLRD 468 (636)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e-----~GA------kVVaVSDs~G~IydpdG--LDve~L~~L~~ 468 (636)
++..+++-.|.+|+..||++.|.|..|..+|+.|.+ .|. +=+-+.|++|-|++... ++..+......
T Consensus 307 gll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~ 386 (581)
T PLN03129 307 GLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD 386 (581)
T ss_pred HHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh
Confidence 888888888999999999999999999999999987 476 45688999999998664 44333211100
Q ss_pred HHhhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhh-cCceEEEeCCC
Q 006671 469 IKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSN 532 (636)
Q Consensus 469 ~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~-~~akiVvEgAN 532 (636)
....++|.+ -+-.++.||||=++. .+.+|++-.+.+.+ +.-.||---+|
T Consensus 387 -~~~~~~L~e--------------~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSN 437 (581)
T PLN03129 387 -HEPGASLLE--------------AVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSN 437 (581)
T ss_pred -cccCCCHHH--------------HHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 000001111 012457899999886 58999998888742 34567777777
No 40
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.50 E-value=0.036 Score=65.76 Aligned_cols=126 Identities=25% Similarity=0.341 Sum_probs=90.8
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCE--EEEEeCCCCceeCCC--CCCHHHHHHHHH
Q 006671 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFLRD 468 (636)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAk--VVaVSDs~G~Iydpd--GLDve~L~~L~~ 468 (636)
.-||-=+..++..+++-.|.+++..||+|.|.|.-|..++++|...|.+ =+.+.|++|.|+... +++..+....
T Consensus 162 ~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a-- 239 (752)
T PRK07232 162 HGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA-- 239 (752)
T ss_pred chHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHh--
Confidence 4567667778888888889999999999999999999999999999983 468999999999865 4554432100
Q ss_pred HHhhcCCccccccccCCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC-CC-CCHH
Q 006671 469 IKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN-MP-CTPE 538 (636)
Q Consensus 469 ~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN-~P-~T~e 538 (636)
...+.++| .+.+. .+||||=++..+.+|++-...+. .-.||---|| -| +|||
T Consensus 240 ~~~~~~~l---------------~~~i~-~~~v~iG~s~~g~~~~~~v~~M~--~~piifalsNP~~E~~p~ 293 (752)
T PRK07232 240 VDTDARTL---------------AEAIE-GADVFLGLSAAGVLTPEMVKSMA--DNPIIFALANPDPEITPE 293 (752)
T ss_pred ccCCCCCH---------------HHHHc-CCCEEEEcCCCCCCCHHHHHHhc--cCCEEEecCCCCccCCHH
Confidence 00000111 11222 37999999999999999988883 3567777777 22 4554
No 41
>smart00597 ZnF_TTF zinc finger in transposases and transcription factors.
Probab=96.34 E-value=0.0011 Score=58.87 Aligned_cols=65 Identities=25% Similarity=0.616 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcc-ce-eeeecCCccceeehhhhhh--ccccCCCCCCCcCcccccccc-chhhhhhhHHHHHH
Q 006671 100 KRWREEWADTYK-WA-YVDVKEGTARIFCSVCREY--GRKHRRNPYGNEGSRNMQMSA-LEEHNNSLLHKEAL 167 (636)
Q Consensus 100 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a-l~~h~~~~~h~~a~ 167 (636)
|+-.-.|-+.|+ |+ |-.. .+++||-+|..| |....-+.|.++|-+|+.... +..|..+.+|..|-
T Consensus 3 RrF~~~W~~~~~~WL~YS~~---~D~~fC~~C~lF~~~~~~~~~~f~~~Gf~nwk~~~~l~~H~~s~~H~~a~ 72 (90)
T smart00597 3 RRFQRSWFKQFPDWLEYSVE---KDKAFCKACYLFRPGRDGDSDLFVTEGFCSWNVERILKQHEVSKRHRNAF 72 (90)
T ss_pred ccccccccccCcchheeecc---cCcEEEEEEEeeccCCCCCcCcccccCcCcchhhhhHHhhcCCHHHHhHH
Confidence 445567888999 98 4433 556999999998 456788899999999999876 99999999999986
No 42
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.32 E-value=0.021 Score=59.18 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=73.3
Q ss_pred cEEEEecC-ccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CC
Q 006671 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (636)
Q Consensus 417 krVaIqGf-GNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~e 493 (636)
.+|+|.|+ |.+|+..++.+.+ .+.++++++|.+ ++.... . ..+ +....++ ++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~-----~~~~~~--------~-------~~~-----~i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP-----GSPLVG--------Q-------GAL-----GVAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-----Cccccc--------c-------CCC-----CccccCCHHH
Confidence 48999998 9999999998876 479999999973 322110 0 011 1111111 23
Q ss_pred ccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHH----HHCCceEeccccc
Q 006671 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKANVLIAPAMAA 556 (636)
Q Consensus 494 il~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL----~~rGIlviPD~~a 556 (636)
++. ++|+++-|+..+.. .+++...++.|+.+|++ ....+++-.+.| ++.++++.|.+.-
T Consensus 57 ll~-~~DvVid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 57 VLA-DADVLIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred hcc-CCCEEEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 343 79999999976664 78888888899999987 444555433333 2357788887743
No 43
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.31 E-value=0.07 Score=57.48 Aligned_cols=156 Identities=12% Similarity=0.067 Sum_probs=84.3
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~ 490 (636)
+.+|.|++|.|.|+|++|+.+|+.|...|++|++ .|.+ ++. .. .. . + +.++.+
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~-----~~~---~~---~~----~------~-----~~~~~~ 197 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILY-YSRT-----RKP---EA---EK----E------L-----GAEYRP 197 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCC-----CCh---hh---HH----H------c-----CCEecC
Confidence 5578999999999999999999999999999764 4542 111 00 00 0 0 112222
Q ss_pred CCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHH-HHHHHHCCce-Eecccccccccce
Q 006671 491 EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVL-IAPAMAAGAGGVV 562 (636)
Q Consensus 491 ~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGIl-viPD~~aNAGGVi 562 (636)
-++++ ..|||++-|.. .+.|+.+....+ +.++- ++--|=++ +..+| .+.|++.-|. .+=|...+=-=.
T Consensus 198 l~ell-~~aDiV~l~lP~t~~T~~~i~~~~~~~m-k~ga~-lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~- 273 (333)
T PRK13243 198 LEELL-RESDFVSLHVPLTKETYHMINEERLKLM-KPTAI-LVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY- 273 (333)
T ss_pred HHHHH-hhCCEEEEeCCCChHHhhccCHHHHhcC-CCCeE-EEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-
Confidence 22222 37899988776 355666555544 33544 44455555 45554 4666655443 223332221100
Q ss_pred eecchhccc---cCCCCCCHHHHHHHHHHHHHHHHHHH
Q 006671 563 AGELELNQE---CNMVHWSPEDFESKLQEAMKQTYQRA 597 (636)
Q Consensus 563 vS~~E~~qN---~~~~~ws~eeV~~rL~~~m~~~~~~v 597 (636)
-+.+--..| ..|..|.-++...++.+.+.+.+.+.
T Consensus 274 ~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~ 311 (333)
T PRK13243 274 NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAF 311 (333)
T ss_pred CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 111111122 35677766666666655444444443
No 44
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.28 E-value=0.11 Score=55.48 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=67.6
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~ 491 (636)
.+|.|+||.|.|+|++|+.+|+.+...|.+|++. |..+.- ...++ ++.+-
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~-d~~~~~-~~~~~----------------------------~~~~l 190 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYY-STSGKN-KNEEY----------------------------ERVSL 190 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEE-CCCccc-cccCc----------------------------eeecH
Confidence 4789999999999999999999999999998765 432210 00111 11111
Q ss_pred CCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHH-HHHHHHCCceEeccccc
Q 006671 492 AKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVLIAPAMAA 556 (636)
Q Consensus 492 ~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGIlviPD~~a 556 (636)
++++ ..|||++-+.. .+.|+.+.-.++ +.++ +++--|=++ +..+| .+.|++..|..+=|...
T Consensus 191 ~ell-~~sDvv~lh~Plt~~T~~li~~~~~~~M-k~~a-~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~~ 259 (311)
T PRK08410 191 EELL-KTSDIISIHAPLNEKTKNLIAYKELKLL-KDGA-ILINVGRGGIVNEKDLAKALDEKDIYAGLDVLE 259 (311)
T ss_pred HHHh-hcCCEEEEeCCCCchhhcccCHHHHHhC-CCCe-EEEECCCccccCHHHHHHHHHcCCeEEEEecCC
Confidence 2222 25787766554 466677766655 3344 444555566 44444 46776665554445443
No 45
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.25 E-value=0.0036 Score=56.60 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=46.6
Q ss_pred cCccHHHHHHHHHHHC----CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CCccc-
Q 006671 423 GSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKPWN- 496 (636)
Q Consensus 423 GfGNVG~~aAe~L~e~----GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~eil~- 496 (636)
|+|+||+.+++.|.+. +.+|++|+|++ .+.+++ .. ... ++.....+ +++++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~-----~~---~~~--------------~~~~~~~~~~~~~~~ 57 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD-----WA---ASF--------------PDEAFTTDLEELIDD 57 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT-----HH---HHH--------------THSCEESSHHHHHTH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh-----hh---hhc--------------ccccccCCHHHHhcC
Confidence 8999999999999886 78999999998 666655 10 000 01111111 22333
Q ss_pred cccceEecCCCcCccchhhHHHhhhcCceEE
Q 006671 497 ERCDVAFPCASQNEIDQSDAINLVNSGCRIL 527 (636)
Q Consensus 497 ~~cDIliPcA~~n~It~enA~~l~~~~akiV 527 (636)
.++||+|.|+..+.+ .+-+...++.|+.+|
T Consensus 58 ~~~dvvVE~t~~~~~-~~~~~~~L~~G~~VV 87 (117)
T PF03447_consen 58 PDIDVVVECTSSEAV-AEYYEKALERGKHVV 87 (117)
T ss_dssp TT-SEEEE-SSCHHH-HHHHHHHHHTTCEEE
T ss_pred cCCCEEEECCCchHH-HHHHHHHHHCCCeEE
Confidence 478999999654333 233444445566666
No 46
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.23 E-value=0.07 Score=56.25 Aligned_cols=133 Identities=12% Similarity=0.033 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g 474 (636)
-|+|++.+++. .+.++.+++|+|.|.|.+|+.++..|...|++-|.|.|.+ .++.+.+.+.-..
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~~-- 173 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELNA-- 173 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHHh--
Confidence 36777777753 3356789999999999999999999999998668888872 3343333221111
Q ss_pred CccccccccCCceeeCCCCcc--ccccceEecCCCcCccchh----hHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCc
Q 006671 475 SLRDYSKTYARSKYYDEAKPW--NERCDVAFPCASQNEIDQS----DAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV 548 (636)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil--~~~cDIliPcA~~n~It~e----nA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI 548 (636)
.++.......+++. -.++||+|-|..-+.-... +...| ....+|.+-.-+|....-.+.-+++|.
T Consensus 174 -------~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l--~~~~~v~DivY~P~~T~ll~~A~~~G~ 244 (284)
T PRK12549 174 -------RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELL--RPGLWVADIVYFPLETELLRAARALGC 244 (284)
T ss_pred -------hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHc--CCCcEEEEeeeCCCCCHHHHHHHHCCC
Confidence 11111222112211 1368999988653321110 12223 245678888888854445555667776
Q ss_pred eEec
Q 006671 549 LIAP 552 (636)
Q Consensus 549 lviP 552 (636)
.++.
T Consensus 245 ~~~~ 248 (284)
T PRK12549 245 RTLD 248 (284)
T ss_pred eEec
Confidence 6553
No 47
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.23 E-value=0.058 Score=52.92 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=43.7
Q ss_pred CCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccH-HHHHHHHHHHCCCEEEEEeCC
Q 006671 389 SLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI-AMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNV-G~~aAe~L~e~GAkVVaVSDs 448 (636)
.....+|++.++..++. ...++.|++|+|.|.|.+ |..+|+.|.+.|++ |.++++
T Consensus 21 ~~~~p~~~~a~v~l~~~----~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r 76 (168)
T cd01080 21 PGFIPCTPAGILELLKR----YGIDLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHS 76 (168)
T ss_pred CCccCChHHHHHHHHHH----cCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEEC
Confidence 34557888777665544 456899999999999985 88899999999998 667775
No 48
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.20 E-value=0.012 Score=65.28 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 404 QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 404 ~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+++..+..+.|++|+|.|+|.+|..+|+.+...|++| .|+|.
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~V-iV~d~ 233 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARV-IVTEV 233 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEEC
Confidence 445555677899999999999999999999999999985 45665
No 49
>PRK13529 malate dehydrogenase; Provisional
Probab=96.12 E-value=0.37 Score=55.58 Aligned_cols=186 Identities=17% Similarity=0.198 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHH
Q 006671 322 KSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVF 401 (636)
Q Consensus 322 ~S~~El~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~ 401 (636)
.+.+|...|...||..+.+.. |..-|-=+|++.. .--.|.+.|+.-. -++ .+--.-||-=+..
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~i----~~F----------nDDiQGTaaV~LA 280 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK--NARRILERYRDEI----CTF----------NDDIQGTGAVTLA 280 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--hHHHHHHHhccCC----Cee----------ccccchHHHHHHH
Confidence 356788889999999988765 6666777888753 3334566776421 111 1222346666667
Q ss_pred HHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHH----CCC------EEEEEeCCCCceeCCCC-CCHHHHHHHHHHH
Q 006671 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG-FDYMKISFLRDIK 470 (636)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e----~GA------kVVaVSDs~G~IydpdG-LDve~L~~L~~~k 470 (636)
++..+++-.|.+|+..||+|.|.|..|..+|+.|.+ .|. +-+-+.|++|-|++..+ ++..+.. +.
T Consensus 281 gll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~----fa 356 (563)
T PRK13529 281 GLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKP----YA 356 (563)
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHH----Hh
Confidence 888888888999999999999999999999999986 687 35789999999998765 3322211 10
Q ss_pred hhcCCccccccccCCc-eeeCCCC-ccccccceEecCCC-cCccchhhHHHhhh-cCceEEEeCCC
Q 006671 471 SQQRSLRDYSKTYARS-KYYDEAK-PWNERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSN 532 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a-~~i~~~e-il~~~cDIliPcA~-~n~It~enA~~l~~-~~akiVvEgAN 532 (636)
.....+..+ +.. ...+-.+ +-.++.||||=++. .+.+|++-.+.+.+ +.=.||---+|
T Consensus 357 ~~~~~~~~~----~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 418 (563)
T PRK13529 357 RKREELADW----DTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSN 418 (563)
T ss_pred hhccccccc----ccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 111111111 000 0000011 12456799999988 68999998888843 23467777777
No 50
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.09 E-value=0.02 Score=53.54 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=66.6
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~ 491 (636)
.++++++|.|.|.|.+|+.++..|.+.|++-|.|.+. +.+++..|.+.. .+ ....+++-
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------t~~ra~~l~~~~--~~---------~~~~~~~~ 66 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------TPERAEALAEEF--GG---------VNIEAIPL 66 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------SHHHHHHHHHHH--TG---------CSEEEEEG
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------CHHHHHHHHHHc--Cc---------cccceeeH
Confidence 4899999999999999999999999999997888876 344444343221 00 01222222
Q ss_pred CCcc--ccccceEecCCCc--CccchhhHHHhhhcCceEEEeCCCCC-CCHH
Q 006671 492 AKPW--NERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMP-CTPE 538 (636)
Q Consensus 492 ~eil--~~~cDIliPcA~~--n~It~enA~~l~~~~akiVvEgAN~P-~T~e 538 (636)
+++. ..++||+|-|... ..|+.+....... +.++|++-|+-+ ++|+
T Consensus 67 ~~~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~-~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 67 EDLEEALQEADIVINATPSGMPIITEEMLKKASK-KLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp GGHCHHHHTESEEEE-SSTTSTSSTHHHHTTTCH-HCSEEEES-SS-SB-TT
T ss_pred HHHHHHHhhCCeEEEecCCCCcccCHHHHHHHHh-hhhceeccccCCCCChh
Confidence 2222 3479999998764 4777776654411 136999999632 5544
No 51
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.08 E-value=0.042 Score=52.86 Aligned_cols=105 Identities=19% Similarity=0.310 Sum_probs=64.6
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCC---------c
Q 006671 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYAR---------S 486 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~---------a 486 (636)
.+|+|.|||.+|+.+++.+.+ .+..++++.|. .|++.+..|+++-...|.+..-.. +.+ .
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~---------~~~~~~a~ll~~Ds~hg~~~~~v~-~~~~~l~i~g~~i 70 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL---------TDPETLAHLLKYDSVHGRFPGEVE-VDEDGLIVNGKKI 70 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC---------CCHHHHHHHhcccCCCCCCCCcEE-EeCCEEEECCEEE
Confidence 379999999999999998875 58899999874 244444444443333343321100 000 0
Q ss_pred eee---CCCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC
Q 006671 487 KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 487 ~~i---~~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (636)
..+ ++.+ +| ...+||++.| ++.-.+.+.+..-++.|||-|+=+|-
T Consensus 71 ~~~~~~~p~~~~w~~~gvDiVie~-tG~f~~~~~~~~hl~~GakkViisap 120 (149)
T smart00846 71 KVLAERDPANLPWKELGVDIVVEC-TGKFTTREKASAHLKAGAKKVIISAP 120 (149)
T ss_pred EEEecCChHHCcccccCCeEEEec-cccccchHHHHHHHHcCCCEEEeCCC
Confidence 111 1111 35 4578999999 66667777776666778777766663
No 52
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.02 E-value=0.022 Score=59.58 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=71.6
Q ss_pred CCCcEEEEecCccHHHHHHHHHHH--CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-C
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIA--YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-D 490 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e--~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i-~ 490 (636)
++..||.|.|+|++|+..++.|.+ .+..+++|.|. ++ ++.. +..+. ++...+. +
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr-----~~-----~~a~---~~a~~----------~g~~~~~~~ 60 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR-----DP-----QRHA---DFIWG----------LRRPPPVVP 60 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC-----CH-----HHHH---HHHHh----------cCCCcccCC
Confidence 456899999999999999999986 48899999887 22 2211 11111 1111112 2
Q ss_pred CCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCceE
Q 006671 491 EAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLI 550 (636)
Q Consensus 491 ~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGIlv 550 (636)
.++++ .++|+++-|+.... +.+-+..+++.+..+|++..-.. ...+..+..+++|+.+
T Consensus 61 ~eell-~~~D~Vvi~tp~~~-h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 61 LDQLA-THADIVVEAAPASV-LRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred HHHHh-cCCCEEEECCCcHH-HHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 23344 36899999997654 57777777788999998742211 1234445667888754
No 53
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.99 E-value=0.043 Score=57.78 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=69.2
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-CCCCccc
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPWN 496 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i-~~~eil~ 496 (636)
+|.|+|+|++|+..|+.|.+.|.+| .+.|.+ .+++..+ .+ . ++... +.+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v-~v~dr~----------~~~~~~~---~~-~-----------g~~~~~~~~e~~~ 55 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEV-VGYDRN----------PEAVEAL---AE-E-----------GATGADSLEELVA 55 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeE-EEEECC----------HHHHHHH---HH-C-----------CCeecCCHHHHHh
Confidence 7999999999999999999999985 455652 2332212 11 1 11111 1122222
Q ss_pred c--ccceEecCCCcCccchhhHHHhh---hcCceEEEeCCC-CC-CCHHHHHHHHHCCceEecccccccccce
Q 006671 497 E--RCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSN-MP-CTPEAVDVLKKANVLIAPAMAAGAGGVV 562 (636)
Q Consensus 497 ~--~cDIliPcA~~n~It~enA~~l~---~~~akiVvEgAN-~P-~T~eA~~iL~~rGIlviPD~~aNAGGVi 562 (636)
. .+|+++-|-.......+....+. ..+ .+|+..++ .| .+.+..+.++++|+.|+ | +..+||+.
T Consensus 56 ~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~ 125 (301)
T PRK09599 56 KLPAPRVVWLMVPAGEITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVW 125 (301)
T ss_pred hcCCCCEEEEEecCCcHHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHH
Confidence 1 36887666554433333333332 223 45666655 55 45566788999999998 6 67777754
No 54
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.93 E-value=0.058 Score=58.27 Aligned_cols=106 Identities=17% Similarity=0.275 Sum_probs=69.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCC--CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccc------cccCC--c
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS------KTYAR--S 486 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~G--AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~------~~~p~--a 486 (636)
.||+|=|||-.|+.+++.+.+.+ ..||+|.|. .|.+-+..|.++....|.+..-+ ..+.+ .
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 48999999999999999999975 899999995 23444444544433233322211 11111 1
Q ss_pred eee---CCCC-cc-ccccceEecCCCcCccchhhHHHhhhc-CceEEEeCCC
Q 006671 487 KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNS-GCRILVEGSN 532 (636)
Q Consensus 487 ~~i---~~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~-~akiVvEgAN 532 (636)
+.. +++. +| +..+||.+.|+.... +.+++.+.++. |||-|.-+|=
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isap 123 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISAP 123 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcCC
Confidence 111 1122 35 467899999998776 89999977666 5888887763
No 55
>PRK07574 formate dehydrogenase; Provisional
Probab=95.91 E-value=0.11 Score=57.18 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=86.7
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-C
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-D 490 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i-~ 490 (636)
.+|.|++|.|.|+|++|+.+|+.|...|.+|++. |. ...+.+.. . .+ +.++. +
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~-dr-------~~~~~~~~-------~------~~-----g~~~~~~ 241 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT-DR-------HRLPEEVE-------Q------EL-----GLTYHVS 241 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC-------CCCchhhH-------h------hc-----CceecCC
Confidence 4689999999999999999999999999997644 43 22221110 0 00 12211 1
Q ss_pred CCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCCC-CHHH-HHHHHHCCce-Eecccccccccce
Q 006671 491 EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMPC-TPEA-VDVLKKANVL-IAPAMAAGAGGVV 562 (636)
Q Consensus 491 ~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P~-T~eA-~~iL~~rGIl-viPD~~aNAGGVi 562 (636)
-++++ ..|||++-|.. .+.|+++....+ +.++ +++--|-+++ ..+| .+.|++.-|. ++=|..-+=-=..
T Consensus 242 l~ell-~~aDvV~l~lPlt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~ 318 (385)
T PRK07574 242 FDSLV-SVCDVVTIHCPLHPETEHLFDADVLSRM-KRGS-YLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPA 318 (385)
T ss_pred HHHHh-hcCCEEEEcCCCCHHHHHHhCHHHHhcC-CCCc-EEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCC
Confidence 12233 47899988776 455655555544 3344 5556666664 4444 4677766554 3334332211000
Q ss_pred eecchhccc---cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006671 563 AGELELNQE---CNMVHWSPEDFESKLQEAMKQTYQRAL 598 (636)
Q Consensus 563 vS~~E~~qN---~~~~~ws~eeV~~rL~~~m~~~~~~v~ 598 (636)
-+-+--..| ..|+.+.-.+..+++.+...+.+.+.+
T Consensus 319 d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~ 357 (385)
T PRK07574 319 DHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFF 357 (385)
T ss_pred CChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHH
Confidence 111111223 355666666666666555555554444
No 56
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.88 E-value=0.024 Score=52.45 Aligned_cols=116 Identities=20% Similarity=0.293 Sum_probs=70.2
Q ss_pred cEEEEecC-ccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CC
Q 006671 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (636)
Q Consensus 417 krVaIqGf-GNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~e 493 (636)
.||+|.|+ |++|+.+++.+.+ .+..++++.|++.. +-.|-|+.++. + +.. .+....+. ++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--~~~g~d~g~~~---------~-~~~-----~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--AKVGKDVGELA---------G-IGP-----LGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--TTTTSBCHHHC---------T-SST------SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--ccccchhhhhh---------C-cCC-----cccccchhHHH
Confidence 37999999 9999999999988 89999999998552 12355554421 0 000 12222222 23
Q ss_pred ccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHH----CCceEecc
Q 006671 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK----ANVLIAPA 553 (636)
Q Consensus 494 il~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~----rGIlviPD 553 (636)
++.. |||+|-++.... ..++++..++.++.+|++-.- .|++..+.|++ -++++.|.
T Consensus 64 ~~~~-~DVvIDfT~p~~-~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~N 123 (124)
T PF01113_consen 64 LLEE-ADVVIDFTNPDA-VYDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAPN 123 (124)
T ss_dssp HTTH--SEEEEES-HHH-HHHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-SS
T ss_pred hccc-CCEEEEcCChHH-hHHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeCC
Confidence 4444 999999984433 345666677889999986543 35555555554 45666654
No 57
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.88 E-value=0.036 Score=61.52 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=34.7
Q ss_pred HHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 406 ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 406 ~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++..+..+.|++|+|.|+|++|..+|+.+...|++| .|.|.
T Consensus 185 i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~V-iV~d~ 226 (406)
T TIGR00936 185 ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARV-IVTEV 226 (406)
T ss_pred HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEE-EEEeC
Confidence 3343466789999999999999999999999999995 45554
No 58
>PRK12862 malic enzyme; Reviewed
Probab=95.87 E-value=0.14 Score=61.21 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=105.9
Q ss_pred ccCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccH
Q 006671 348 LPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI 427 (636)
Q Consensus 348 VpA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNV 427 (636)
|-=+|++.. .--.+.+.|+..... -++ .+--.-||-=+..++..+++-.|.+|+..||+|.|.|.-
T Consensus 139 i~~ED~~~~--~~f~i~~~~~~~~~i--p~f----------~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa 204 (763)
T PRK12862 139 INLEDIKAP--ECFYIERELRERMKI--PVF----------HDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA 204 (763)
T ss_pred eeeecccCc--hHHHHHHHHHhcCCC--ceE----------ecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH
Confidence 556777643 445566777653211 111 122234666666788888888899999999999999999
Q ss_pred HHHHHHHHHHCCCE--EEEEeCCCCceeCCC--CCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccccccceEe
Q 006671 428 AMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAF 503 (636)
Q Consensus 428 G~~aAe~L~e~GAk--VVaVSDs~G~Iydpd--GLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIli 503 (636)
|..+|++|...|.+ =+.+.|++|.|+... +++..+..... ..+.++| .+.+. .+||||
T Consensus 205 g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~--~~~~~~l---------------~e~~~-~~~v~i 266 (763)
T PRK12862 205 ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQ--KTDARTL---------------AEVIE-GADVFL 266 (763)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhh--hcccCCH---------------HHHHc-CCCEEE
Confidence 99999999999983 468999999999865 36544421110 0010111 11222 279999
Q ss_pred cCCCcCccchhhHHHhhhcCceEEEeCCC-CC-CCHH
Q 006671 504 PCASQNEIDQSDAINLVNSGCRILVEGSN-MP-CTPE 538 (636)
Q Consensus 504 PcA~~n~It~enA~~l~~~~akiVvEgAN-~P-~T~e 538 (636)
=++..+.+|++-.+.+. .=.||---|| -| +|||
T Consensus 267 G~s~~g~~~~~~v~~M~--~~piifalsNP~~E~~p~ 301 (763)
T PRK12862 267 GLSAAGVLKPEMVKKMA--PRPLIFALANPTPEILPE 301 (763)
T ss_pred EcCCCCCCCHHHHHHhc--cCCEEEeCCCCcccCCHH
Confidence 99999999999998883 4567777777 22 4554
No 59
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=95.83 E-value=0.042 Score=59.56 Aligned_cols=106 Identities=18% Similarity=0.286 Sum_probs=70.3
Q ss_pred cEEEEecCccHHHHHHHHHHHC----CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc------ccCC-
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR- 485 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~----GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~------~~p~- 485 (636)
.+|+|.|||-||+.+.+.|.+. ...+|+|-|. .|.+.+..|+++-...|++..-.. .+.+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~---------~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~ 72 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL---------ADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDD 72 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCE
Confidence 3799999999999999999874 5788888774 255666556655444443321110 0111
Q ss_pred -ceee---CCCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC
Q 006671 486 -SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 486 -a~~i---~~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (636)
.... ++++ .| +..+||++.|+.. ..+.+.|+..++.||+.|.=.|-
T Consensus 73 ~i~v~~~~~p~~~~w~~~gvDiVle~tG~-~~s~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 73 AIRLLHERDIASLPWRELGVDVVLDCTGV-YGSREDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEccch-hhhHHHHHHHHHcCCEEEEecCC
Confidence 1122 2222 47 3799999999965 47888888888889888876653
No 60
>PLN03139 formate dehydrogenase; Provisional
Probab=95.81 E-value=0.13 Score=56.83 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=84.9
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY- 489 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i- 489 (636)
+.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .|. ...+.+.. .. .++++.
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~-------~~~~~~~~-------~~-----------~g~~~~~ 247 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDR-------LKMDPELE-------KE-----------TGAKFEE 247 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECC-------CCcchhhH-------hh-----------cCceecC
Confidence 4579999999999999999999999999999765 443 22222110 00 012222
Q ss_pred CCCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHHH-HHHHHCCce-Eecccccccccc
Q 006671 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL-IAPAMAAGAGGV 561 (636)
Q Consensus 490 ~~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGIl-viPD~~aNAGGV 561 (636)
+-++++ ..|||++-|.. .+.|+.+....+ +.++ +++--|=++ +..+|- +.|++.-|. ++=|...+=-=-
T Consensus 248 ~l~ell-~~sDvV~l~lPlt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp 324 (386)
T PLN03139 248 DLDAML-PKCDVVVINTPLTEKTRGMFNKERIAKM-KKGV-LIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAP 324 (386)
T ss_pred CHHHHH-hhCCEEEEeCCCCHHHHHHhCHHHHhhC-CCCe-EEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCC
Confidence 112233 36899987766 355555444443 3344 555556666 444543 666665554 333433221000
Q ss_pred eeecchhccc---cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006671 562 VAGELELNQE---CNMVHWSPEDFESKLQEAMKQTYQRAL 598 (636)
Q Consensus 562 ivS~~E~~qN---~~~~~ws~eeV~~rL~~~m~~~~~~v~ 598 (636)
.-+-+--..| ..|+.|.-.+...++.+...+.+.+.+
T Consensus 325 ~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~ 364 (386)
T PLN03139 325 KDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYF 364 (386)
T ss_pred CCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHH
Confidence 0010100112 356667666666666555555444433
No 61
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.79 E-value=0.036 Score=53.23 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=63.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~ 496 (636)
++|.+.|+|++|...|+.|.+.|..| .+-|. +.+++..+. +. +++..+.-.-+-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v-~~~d~----------~~~~~~~~~---~~------------g~~~~~s~~e~~ 55 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEV-TVYDR----------SPEKAEALA---EA------------GAEVADSPAEAA 55 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEE-EEEES----------SHHHHHHHH---HT------------TEEEESSHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeE-Eeecc----------chhhhhhhH---Hh------------hhhhhhhhhhHh
Confidence 58999999999999999999999995 44454 334433222 11 222222211123
Q ss_pred cccceEecCCCcCccchhhHHH--hhh--cCceEEEeCCCC-C-CCHHHHHHHHHCCceEec
Q 006671 497 ERCDVAFPCASQNEIDQSDAIN--LVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIAP 552 (636)
Q Consensus 497 ~~cDIliPcA~~n~It~enA~~--l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGIlviP 552 (636)
..||+++-|-.......+.... |.. ..=++|++-++. | .+.+..+.+.++|+.|+=
T Consensus 56 ~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 56 EQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp HHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred hcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeee
Confidence 4779988876653333332222 221 245677777663 3 456667888999998873
No 62
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.78 E-value=0.014 Score=60.78 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=69.2
Q ss_pred cEEEEecCccHHHHHHHHHHHC--CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-CCCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAK 493 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~--GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i-~~~e 493 (636)
.+|.|.|+|++|...++.|.+. +..+++|.|.+ .+....+. +. + +.... +.++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~----------~~~a~~~a---~~------~-----~~~~~~~~~e 57 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN----------LEKAENLA---SK------T-----GAKACLSIDE 57 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC----------HHHHHHHH---Hh------c-----CCeeECCHHH
Confidence 4799999999999999998875 57889999872 22221111 11 1 11122 2234
Q ss_pred ccccccceEecCCCcCccchhhHHHhhhcCceEEEeCC----CCCCCHHHHHHHHHCCc-eEecc
Q 006671 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS----NMPCTPEAVDVLKKANV-LIAPA 553 (636)
Q Consensus 494 il~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA----N~P~T~eA~~iL~~rGI-lviPD 553 (636)
++ .++|+++-|+.... ..+-+..+++.++.+|++.. +-+...+..+..+++|+ +++|.
T Consensus 58 ll-~~~DvVvi~a~~~~-~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 58 LV-EDVDLVVECASVNA-VEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred Hh-cCCCEEEEcCChHH-HHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 45 58999999986544 46667777777888888642 22222333455667785 44443
No 63
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.73 E-value=0.34 Score=51.87 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaV 445 (636)
.+|.|+||.|.|+|++|+.+|+.|...|++|+++
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~ 176 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA 176 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE
Confidence 4689999999999999999999999999998875
No 64
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.72 E-value=0.053 Score=58.52 Aligned_cols=104 Identities=16% Similarity=0.298 Sum_probs=65.9
Q ss_pred EEEEecCccHHHHHHHHHHHCC----CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc------ccC--C
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYA--R 485 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~G----AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~------~~p--~ 485 (636)
||+|.|||-+|+.+++.|.+.+ ..|++|.|.. +.+.+..|.++-...|++..-.. .+. .
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~---------~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 71 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA---------DQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDC 71 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC---------CHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeE
Confidence 5899999999999999998864 7999998851 23333334433222233211000 000 1
Q ss_pred ceee---CCCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 486 SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 486 a~~i---~~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
.+.. ++++ .| +..+|+++.|+... .+.+.|...++.||+.|.-.|
T Consensus 72 i~v~~~~~p~~~~w~~~gvDiVie~tG~~-~s~e~a~~~l~aGa~~V~~Sa 121 (325)
T TIGR01532 72 IRVLHSPTPEALPWRALGVDLVLDCTGVY-GNREQGERHIRAGAKRVLFSH 121 (325)
T ss_pred EEEEEcCChhhccccccCCCEEEEccchh-ccHHHHHHHHHcCCeEEEecC
Confidence 1222 2222 46 46899999999654 778888888888988777665
No 65
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.72 E-value=0.18 Score=53.46 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=84.7
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHC----CC------EEEEEeCCCCceeCCCC-CCHHHH
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDEDG-FDYMKI 463 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~----GA------kVVaVSDs~G~IydpdG-LDve~L 463 (636)
||-=+..++..+++-.|.+|+..||+|.|.|.-|..+|+.|... |. +-+-+.|++|-|++... ++..+.
T Consensus 4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~ 83 (279)
T cd05312 4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKK 83 (279)
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHH
Confidence 45455567778888889999999999999999999999999876 87 55789999999998654 433322
Q ss_pred HHHHHHHhhcCCccccccccCCceeeCCCCcc-ccccceEecCCC-cCccchhhHHHhhh-cCceEEEeCCC
Q 006671 464 SFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSN 532 (636)
Q Consensus 464 ~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil-~~~cDIliPcA~-~n~It~enA~~l~~-~~akiVvEgAN 532 (636)
... .+ ... . ...+-.+.. .+++||||=++. .+.+|++-.+.+.+ +.=.||---+|
T Consensus 84 ~~a--~~--~~~-~---------~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 84 PFA--RK--DEE-K---------EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred HHH--hh--cCc-c---------cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 111 00 000 0 000001112 358899999885 68999998888742 23567777777
No 66
>PLN02928 oxidoreductase family protein
Probab=95.69 E-value=0.29 Score=53.09 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=69.3
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~ 490 (636)
+.+|.|+||.|.|+|++|+.+|+.|...|++|++. |.+.. ++ .... + .+.. ..+..+... ...+.+
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~-dr~~~---~~---~~~~--~-~~~~--~~~~~~~~~--~~~~~~ 219 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT-RRSWT---SE---PEDG--L-LIPN--GDVDDLVDE--KGGHED 219 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCCC---hh---hhhh--h-cccc--ccccccccc--cCcccC
Confidence 35799999999999999999999999999997654 44210 00 0000 0 0000 000110000 001111
Q ss_pred CCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHH-HHHHHHCCce-Eecccc
Q 006671 491 EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVL-IAPAMA 555 (636)
Q Consensus 491 ~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGIl-viPD~~ 555 (636)
-++++ ..|||++-|.. .+.|+.+.-..+ +.++ +++--|=++ +..+| .+.|.+.-|. .+=|..
T Consensus 220 L~ell-~~aDiVvl~lPlt~~T~~li~~~~l~~M-k~ga-~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 220 IYEFA-GEADIVVLCCTLTKETAGIVNDEFLSSM-KKGA-LLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred HHHHH-hhCCEEEECCCCChHhhcccCHHHHhcC-CCCe-EEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 11222 36899988765 566666665555 3344 555566667 45555 3566555443 344553
No 67
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.63 E-value=0.094 Score=50.11 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=64.5
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHh
Q 006671 393 EATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (636)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~ 471 (636)
..|..|+ .+++++.|.+++|++|.|.| ...||.-++.+|.+.|+. |.+++++. -|+++
T Consensus 9 p~t~~a~----~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~~~t-------~~l~~--------- 67 (140)
T cd05212 9 SPVAKAV----KELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCDWKT-------IQLQS--------- 67 (140)
T ss_pred ccHHHHH----HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeCCCC-------cCHHH---------
Confidence 4566555 45556679999999999999 788999999999999999 45666522 12211
Q ss_pred hcCCccccccccCCceeeCCCCccccccceEecCCCc-CccchhhHHHhhhcCceEEEeCCCC
Q 006671 472 QQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
+ -..|||++-|... +.|+.+. ++-|+.+|-=|-|.
T Consensus 68 -------~----------------v~~ADIVvsAtg~~~~i~~~~----ikpGa~Vidvg~~~ 103 (140)
T cd05212 68 -------K----------------VHDADVVVVGSPKPEKVPTEW----IKPGATVINCSPTK 103 (140)
T ss_pred -------H----------------HhhCCEEEEecCCCCccCHHH----cCCCCEEEEcCCCc
Confidence 1 1367888887764 4455554 34588888666665
No 68
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.59 E-value=0.064 Score=58.26 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcc
Q 006671 398 GLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLR 477 (636)
Q Consensus 398 GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~ 477 (636)
.+.+++..+++.. .++.+++|.|.|.|.+|.-+|+.|.+.|++-|.|+..+-.. ++.+.+
T Consensus 157 Sv~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~-------------- 216 (338)
T PRK00676 157 TIESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTV-------------- 216 (338)
T ss_pred CHHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhh--------------
Confidence 3444455555555 57999999999999999999999999998778888875411 111110
Q ss_pred ccccccCCceeeCCCCccccccceEecC-----CCcCccchhhHHHhhhcCceEEEeCCCC
Q 006671 478 DYSKTYARSKYYDEAKPWNERCDVAFPC-----ASQNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 478 ~y~~~~p~a~~i~~~eil~~~cDIliPc-----A~~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
+ .+.+ -+..++||+|-| +....|+.+....+ .-++++.=|+-
T Consensus 217 ------~-~~~~----~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r~~iDLAvP 263 (338)
T PRK00676 217 ------V-REEL----SFQDPYDVIFFGSSESAYAFPHLSWESLADI---PDRIVFDFNVP 263 (338)
T ss_pred ------h-hhhh----hcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cCcEEEEecCC
Confidence 0 0000 112478999954 56678887765544 34688888863
No 69
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.51 E-value=0.093 Score=54.93 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCE----------EEEEeCCCCceeCCCC-CCHHHH
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI----------PVSVSDAKGYLVDEDG-FDYMKI 463 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAk----------VVaVSDs~G~IydpdG-LDve~L 463 (636)
||-=+..++..+++-.|.+|+..||+|.|.|.-|..+|++|.+.+.+ =+-+.|++|-|++... ++..+.
T Consensus 4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~ 83 (254)
T cd00762 4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEY 83 (254)
T ss_pred hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHH
Confidence 45445567778888889999999999999999999999999987764 5789999999998764 443321
Q ss_pred HHHHHHHhhcCCccccccccCCceeeCCCCcc-ccccceEecCCC-cCccchhhHHHhhh-cCceEEEeCCC
Q 006671 464 SFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSN 532 (636)
Q Consensus 464 ~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil-~~~cDIliPcA~-~n~It~enA~~l~~-~~akiVvEgAN 532 (636)
. + .+|... .....+-.+.. .++.||||=++. .+.+|++-.+.+.+ +.=.||---+|
T Consensus 84 ~-~----------~~~~~~--~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN 142 (254)
T cd00762 84 H-L----------ARFANP--ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSN 142 (254)
T ss_pred H-H----------HHHcCc--ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCC
Confidence 1 1 112110 00000101112 357899988887 78889888888742 23467776777
No 70
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.48 E-value=0.056 Score=57.46 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=44.6
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGN-VG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+.. +++.+.++.|++|+|.|-++ ||.-+|.+|...||. |+++++
T Consensus 144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vtv~hs 196 (287)
T PRK14176 144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNAT-VSVCHV 196 (287)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCE-EEEEec
Confidence 46898888655 45568899999999999888 999999999999998 678876
No 71
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.46 E-value=0.12 Score=55.26 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (636)
+|.|+||.|.|+|++|+.+|+.|...|.+|+++.-+ . .++|... .+.+-+
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~-~---~~~~~~~--------------------------~~~~l~ 168 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS-Y---VNDGISS--------------------------IYMEPE 168 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC-C---cccCccc--------------------------ccCCHH
Confidence 589999999999999999999999999998766432 1 1222210 000111
Q ss_pred CccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHH-HHHHHHCCc
Q 006671 493 KPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANV 548 (636)
Q Consensus 493 eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGI 548 (636)
+++ ..||+++-|.. .+.|+.+.-..+ +.++-+| --+=++ +..+| .+.|+++.+
T Consensus 169 ell-~~aDiv~~~lp~t~~T~~li~~~~l~~m-k~ga~lI-N~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 169 DIM-KKSDFVLISLPLTDETRGMINSKMLSLF-RKGLAII-NVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred HHH-hhCCEEEECCCCCchhhcCcCHHHHhcC-CCCeEEE-ECCCccccCHHHHHHHHHcCCc
Confidence 222 36888877765 455655555544 3355444 444444 45444 467766544
No 72
>PLN02494 adenosylhomocysteinase
Probab=95.45 E-value=0.068 Score=60.39 Aligned_cols=115 Identities=12% Similarity=0.112 Sum_probs=68.5
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g 474 (636)
||.++ +..+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ +.|. ||.- . +. .+..
T Consensus 236 tgqS~---~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~-----dp~r-----~--~e-A~~~-- 296 (477)
T PLN02494 236 CRHSL---PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEI-----DPIC-----A--LQ-ALME-- 296 (477)
T ss_pred ccccH---HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC-----Cchh-----h--HH-HHhc--
Confidence 45555 44445556677999999999999999999999999999954 4554 2211 0 00 0000
Q ss_pred CccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCC-CCCCCHHHH
Q 006671 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGS-NMPCTPEAV 540 (636)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgA-N~P~T~eA~ 540 (636)
+...++-++++ ..+||++-|+. .+.|+.+.-..+ +.++.+|-=|- +..+..++-
T Consensus 297 ----------G~~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~M-K~GAiLiNvGr~~~eID~~aL 352 (477)
T PLN02494 297 ----------GYQVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRKM-KNNAIVCNIGHFDNEIDMLGL 352 (477)
T ss_pred ----------CCeeccHHHHH-hhCCEEEECCCCccchHHHHHhcC-CCCCEEEEcCCCCCccCHHHH
Confidence 11111112222 26899998654 345666665554 55677765554 444555443
No 73
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.44 E-value=0.047 Score=52.82 Aligned_cols=106 Identities=17% Similarity=0.277 Sum_probs=65.4
Q ss_pred EEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccC------C--cee
Q 006671 418 RCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA------R--SKY 488 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p------~--a~~ 488 (636)
||.|-|||-.|+.+++.+.. ....||+|.|. +.|.+.+..|+++-...|++......-. + .+.
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~--------~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~ 73 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDP--------APDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKV 73 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEES--------SSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecc--------cccchhhhhhhhccccccceecccccccceeEeecccccc
Confidence 79999999999999999984 56899999987 3467776666554333344422211000 0 111
Q ss_pred eCCCC----cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC
Q 006671 489 YDEAK----PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 489 i~~~e----il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (636)
+...+ +| +..+|+++.|+.. -.+.+++...++.+||-|+=+|-
T Consensus 74 ~~~~dp~~i~W~~~gvDiVvEcTG~-f~~~~~~~~hl~~GakkViisap 121 (151)
T PF00044_consen 74 TEERDPEEIPWGELGVDIVVECTGK-FRTRENAEAHLDAGAKKVIISAP 121 (151)
T ss_dssp EHTSSGGGSTHHHHTESEEEETSSS-THSHHHHTHHHHTTESEEEESSS
T ss_pred hhhhhhcccccccccccEEEecccc-ceecccccccccccccceeeccc
Confidence 11111 35 4577888887743 34566666666667777766653
No 74
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.41 E-value=0.023 Score=55.44 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=63.9
Q ss_pred hCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee
Q 006671 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (636)
Q Consensus 410 ~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i 489 (636)
.+.++.|+||.|.|+|++|+.+|+.|...|++|+++.-+ .-+.+. . .. .+.++.
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~--------~~~~~~------~-------~~-----~~~~~~ 83 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRS--------PKPEEG------A-------DE-----FGVEYV 83 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESS--------CHHHHH------H-------HH-----TTEEES
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEeccc--------CChhhh------c-------cc-----ccceee
Confidence 357899999999999999999999999999997765443 111000 0 00 012222
Q ss_pred CCCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHH-HHHHHHCCce
Q 006671 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVL 549 (636)
Q Consensus 490 ~~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGIl 549 (636)
+-++++. .|||++-|.. .+.|+.+.-.++ +.++ +++--|-+. +..+| .+.|++.-|.
T Consensus 84 ~l~ell~-~aDiv~~~~plt~~T~~li~~~~l~~m-k~ga-~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLA-QADIVSLHLPLTPETRGLINAEFLAKM-KPGA-VLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHH-H-SEEEE-SSSSTTTTTSBSHHHHHTS-TTTE-EEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcc-hhhhhhhhhccccccceeeeeeeeecc-ccce-EEEeccchhhhhhhHHHHHHhhccCc
Confidence 2122332 6888877665 466666666555 3345 455566777 45444 3566555444
No 75
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.37 E-value=0.12 Score=55.25 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=32.2
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++..
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~ 178 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ 178 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC
Confidence 46899999999999999999999999999988764
No 76
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.34 E-value=0.13 Score=54.35 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=45.6
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEE
Q 006671 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVS 444 (636)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVa 444 (636)
.-|+|-.+--+.+.++.+|.+++..+|+|.|. |.+|..+|+.|..++.+..-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~l 196 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKEL 196 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEE
Confidence 35889888888888889999999999999996 99999999999988776443
No 77
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.27 E-value=0.063 Score=59.31 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=79.0
Q ss_pred cEEEEecCccHHHHHHHHHHHCC-CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC---
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA--- 492 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~G-AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~--- 492 (636)
++|+|.|.|+||+.+|.+|.+.| .. |.|+|. +.+++.++.... .+.++ +..++-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~-V~iAdR----------s~~~~~~i~~~~--~~~v~--------~~~vD~~d~~ 60 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGE-VTIADR----------SKEKCARIAELI--GGKVE--------ALQVDAADVD 60 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCce-EEEEeC----------CHHHHHHHHhhc--cccce--------eEEecccChH
Confidence 57999999999999999999999 66 788887 233433332211 11111 1111111
Q ss_pred ---CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCceEecccccccccceeec
Q 006671 493 ---KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAAGAGGVVAGE 565 (636)
Q Consensus 493 ---eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGIlviPD~~aNAGGVivS~ 565 (636)
+++. +.|+.|-|+++.. +..-++..++.|..+|- -+|.+ ..-+-++...+.||.++|+. --+-|++..+
T Consensus 61 al~~li~-~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvD-ts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~ 133 (389)
T COG1748 61 ALVALIK-DFDLVINAAPPFV-DLTILKACIKTGVDYVD-TSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVL 133 (389)
T ss_pred HHHHHHh-cCCEEEEeCCchh-hHHHHHHHHHhCCCEEE-cccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHH
Confidence 1222 4599999998654 55555566777888874 55544 44556778899999999876 3344555443
No 78
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.19 E-value=0.098 Score=57.19 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=65.4
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhc
Q 006671 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (636)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~ 473 (636)
-||.+.+-++..+. +.-+.||.++|-|+|-||+..|..|...||+ |.|.+. || +.+|+.++
T Consensus 190 GtgqS~~DgI~RaT---n~liaGK~vVV~GYG~vGrG~A~~~rg~GA~-ViVtEv-----DP----I~AleA~M------ 250 (420)
T COG0499 190 GTGQSLLDGILRAT---NVLLAGKNVVVAGYGWVGRGIAMRLRGMGAR-VIVTEV-----DP----IRALEAAM------ 250 (420)
T ss_pred ccchhHHHHHHhhh---ceeecCceEEEecccccchHHHHHhhcCCCe-EEEEec-----Cc----hHHHHHhh------
Confidence 36666665555443 4558999999999999999999999999999 678886 43 22332221
Q ss_pred CCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHh
Q 006671 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINL 519 (636)
Q Consensus 474 g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l 519 (636)
. |.+.++-++. ....||||-|.. .++|+.+....+
T Consensus 251 ---d-------Gf~V~~m~~A-a~~gDifiT~TGnkdVi~~eh~~~M 286 (420)
T COG0499 251 ---D-------GFRVMTMEEA-AKTGDIFVTATGNKDVIRKEHFEKM 286 (420)
T ss_pred ---c-------CcEEEEhHHh-hhcCCEEEEccCCcCccCHHHHHhc
Confidence 1 2222221111 225699999875 689999988877
No 79
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.17 E-value=0.11 Score=55.14 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=68.5
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHH
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k 470 (636)
..+|..|++.. |++.+.+++||+|+|.| +..||.-++.+|.+.||. |++++++. + |+
T Consensus 139 ~PcTp~avi~l----l~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vt~chs~T----~---~l---------- 196 (284)
T PRK14177 139 LPCTPYGMVLL----LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNAT-VTLCHSKT----Q---NL---------- 196 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC----C---CH----------
Confidence 46899888764 45668999999999999 788999999999999998 67888621 0 11
Q ss_pred hhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCCC
Q 006671 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
.++ ...+||+|-|+. .+.|+.+.. +.++-+|==|-|-
T Consensus 197 ------~~~----------------~~~ADIvIsAvGk~~~i~~~~i----k~gavVIDvGin~ 234 (284)
T PRK14177 197 ------PSI----------------VRQADIIVGAVGKPEFIKADWI----SEGAVLLDAGYNP 234 (284)
T ss_pred ------HHH----------------HhhCCEEEEeCCCcCccCHHHc----CCCCEEEEecCcc
Confidence 111 236799998775 466776643 4478777666664
No 80
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.12 E-value=0.041 Score=61.13 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=90.3
Q ss_pred cEEEEecCccHHHHHHHHHHHC----------CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~----------GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a 486 (636)
.+|+|.|+|+||+.+++.|.+. +.+|++|+|++..-. .+++. ++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~~-----------------------~~~ 58 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVDL-----------------------PGI 58 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCCC-----------------------ccc
Confidence 5899999999999999888653 468999999742211 11110 111
Q ss_pred eeeC-CCCcc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCC-CHHHH---HHHHHCCceEeccccccccc
Q 006671 487 KYYD-EAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC-TPEAV---DVLKKANVLIAPAMAAGAGG 560 (636)
Q Consensus 487 ~~i~-~~eil-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~-T~eA~---~iL~~rGIlviPD~~aNAGG 560 (636)
.+.+ .++++ +.+.||++.|......+.+-+...++.|..+|++ |-+. ..++. ++-+++|+.+. |-+..||
T Consensus 59 ~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta--NK~~~a~~~~eL~~lA~~~gv~l~--fEasV~g 134 (426)
T PRK06349 59 LLTTDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA--NKALLAVHGAELFAAAEEKGVDLY--FEAAVAG 134 (426)
T ss_pred ceeCCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc--CHHHHHHHHHHHHHHHHHcCCcEE--EEEEeec
Confidence 1222 23444 3579999999866555566665667889999964 5332 22333 44468888765 3233222
Q ss_pred ceeecchhccccC------C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006671 561 VVAGELELNQECN------M----VHWSPEDFESKLQEAMKQTYQRALKAATDFGYQKES 610 (636)
Q Consensus 561 VivS~~E~~qN~~------~----~~ws~eeV~~rL~~~m~~~~~~v~~~A~~~~~~~~~ 610 (636)
-+=. +..+++.. . +.=|-.-+..++. .=...|.+++..|++.|..+..
T Consensus 135 giPi-i~~l~~~l~~~~I~~I~GIlnGT~nyIl~~m~-~~g~~f~~al~~Aq~~GyaE~D 192 (426)
T PRK06349 135 GIPI-IKALREGLAANRITRVMGIVNGTTNYILTKMT-EEGLSFEDALKEAQRLGYAEAD 192 (426)
T ss_pred cCch-HHHHHhhcccCCeeEEEEEEeCcHHHHHhhhh-hcCCCHHHHHHHHHHcCCCCCC
Confidence 2110 11111100 0 0001122222221 0133689999999999986543
No 81
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.04 E-value=0.24 Score=55.99 Aligned_cols=152 Identities=16% Similarity=0.200 Sum_probs=89.0
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhc
Q 006671 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (636)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~ 473 (636)
--|+|...+++ ..+.++.++++.|.|.|.+|+.++..|.+.|+.| .+.|. +.+++..+.+ ..
T Consensus 314 TD~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V-~i~~R----------~~~~~~~la~---~~ 375 (477)
T PRK09310 314 TDGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAEL-LIFNR----------TKAHAEALAS---RC 375 (477)
T ss_pred cCHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEE-EEEeC----------CHHHHHHHHH---Hh
Confidence 34677776664 4567889999999999999999999999999975 45554 2233222221 10
Q ss_pred CCccccccccCCceeeCCCCcc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCceEe
Q 006671 474 RSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIA 551 (636)
Q Consensus 474 g~l~~y~~~~p~a~~i~~~eil-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGIlvi 551 (636)
+ ...++.+++- -.++||+|-|..-+..-.+ .+ . ++|.+-.-+| .|+ -.+..+++|+.++
T Consensus 376 ~-----------~~~~~~~~~~~l~~~DiVInatP~g~~~~~---~l---~-~~v~D~~Y~P~~T~-ll~~A~~~G~~~~ 436 (477)
T PRK09310 376 Q-----------GKAFPLESLPELHRIDIIINCLPPSVTIPK---AF---P-PCVVDINTLPKHSP-YTQYARSQGSSII 436 (477)
T ss_pred c-----------cceechhHhcccCCCCEEEEcCCCCCcchh---HH---h-hhEEeccCCCCCCH-HHHHHHHCcCEEE
Confidence 0 0001101110 1378999988765432111 23 2 4788888777 455 4455677776555
Q ss_pred cccccccccceeecchhcc--cc-CCCCCCHHHHHHHHHHHHHHHH
Q 006671 552 PAMAAGAGGVVAGELELNQ--EC-NMVHWSPEDFESKLQEAMKQTY 594 (636)
Q Consensus 552 PD~~aNAGGVivS~~E~~q--N~-~~~~ws~eeV~~rL~~~m~~~~ 594 (636)
.++||+- .. +-..|+..+..++|+....+..
T Consensus 437 ------------~G~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~~~ 470 (477)
T PRK09310 437 ------------YGYEMFAEQALLQFRLWFPTLLFKHLEKTFRRRV 470 (477)
T ss_pred ------------CcHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 4556532 11 1123777777777755444433
No 82
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.98 E-value=0.048 Score=57.06 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHC----CC------EEEEEeCCCCceeCCCCCCHHHHH
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDEDGFDYMKIS 464 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~----GA------kVVaVSDs~G~IydpdGLDve~L~ 464 (636)
||-=+..++-.+++-.|.+|+..||++.|.|.-|..+|++|.+. |. +=+-+.|++|.|++.. -|...
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~-- 80 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNP-- 80 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSH--
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCCh--
Confidence 44444557778888889999999999999999999999999887 98 6688999999999876 22221
Q ss_pred HHHHHHhhcCCcccccccc-CCceeeCCCC-ccccccceEecCC-CcCccchhhHHHhhh-cCceEEEeCCC
Q 006671 465 FLRDIKSQQRSLRDYSKTY-ARSKYYDEAK-PWNERCDVAFPCA-SQNEIDQSDAINLVN-SGCRILVEGSN 532 (636)
Q Consensus 465 ~L~~~k~~~g~l~~y~~~~-p~a~~i~~~e-il~~~cDIliPcA-~~n~It~enA~~l~~-~~akiVvEgAN 532 (636)
++. .|.+.. +...+.+-.+ +-..+.||||=++ ..+.+|++-.+.+.+ +.-.||---+|
T Consensus 81 ----~~~------~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSN 142 (255)
T PF03949_consen 81 ----HKK------PFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSN 142 (255)
T ss_dssp ----HHH------HHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SS
T ss_pred ----hhh------hhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCC
Confidence 111 111100 0011111111 1245779999998 789999999888843 23568888888
No 83
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.96 E-value=0.62 Score=48.41 Aligned_cols=130 Identities=18% Similarity=0.110 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g 474 (636)
-++|.+.++++ .+...+++++.|.|.|.+|+.++..|.+.|++ |.|.+. +.+++..+.+.....+
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~-v~v~~R----------~~~~~~~la~~~~~~~ 164 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCN-VIIANR----------TVSKAEELAERFQRYG 164 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEeC----------CHHHHHHHHHHHhhcC
Confidence 46677766543 34566789999999999999999999999986 556665 2233222222111111
Q ss_pred CccccccccCCceeeCCCCccccccceEecCCCcCc---cchh--hHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCc
Q 006671 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNE---IDQS--DAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANV 548 (636)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~---It~e--nA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGI 548 (636)
.....+.++....++||+|-|+.-.. +... +...+ . .-.+|++-.-.| -| .-.+..+++|+
T Consensus 165 ----------~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l-~-~~~~v~D~~y~p~~T-~ll~~A~~~G~ 231 (270)
T TIGR00507 165 ----------EIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKL-K-EGMVVYDMVYNPGET-PFLAEAKSLGT 231 (270)
T ss_pred ----------ceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHc-C-CCCEEEEeccCCCCC-HHHHHHHHCCC
Confidence 11112222222237999999887532 2111 12222 1 234778887676 45 45566778877
Q ss_pred eEec
Q 006671 549 LIAP 552 (636)
Q Consensus 549 lviP 552 (636)
.++.
T Consensus 232 ~~vd 235 (270)
T TIGR00507 232 KTID 235 (270)
T ss_pred eeeC
Confidence 6653
No 84
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.94 E-value=0.25 Score=52.53 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 403 ~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++.+...++ ++.|++|.|.|.|.+|..+++.|...|++.|.|+|.
T Consensus 166 v~~a~~~~~-~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r 210 (311)
T cd05213 166 VELAEKIFG-NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR 210 (311)
T ss_pred HHHHHHHhC-CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 443333333 488999999999999999999999988877888886
No 85
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.94 E-value=0.047 Score=60.08 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006671 404 QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 404 ~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaV 445 (636)
-.+.+..+.++.|+||.|+|+||||+.+|+.|...|.+|++.
T Consensus 104 L~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~ 145 (381)
T PRK00257 104 LTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVC 145 (381)
T ss_pred HHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 333455678999999999999999999999999999997654
No 86
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.93 E-value=0.15 Score=55.47 Aligned_cols=107 Identities=16% Similarity=0.250 Sum_probs=71.0
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccc-ccc-------ccCC--
Q 006671 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD-YSK-------TYAR-- 485 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~-y~~-------~~p~-- 485 (636)
.||+|.|||.+|+..++.+.+ .+..+|+|.|... |.+.+..|+++-...|++.. -.. .+.+
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~--------~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~ 77 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI--------TTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 77 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC--------CHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEE
Confidence 599999999999999999876 4789999988632 45555555554444455432 110 0111
Q ss_pred ceeeC---CCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC
Q 006671 486 SKYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 486 a~~i~---~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (636)
..... +++ .| +..+||++.|+.. ..+.+.|...++.|||.|.=.|.
T Consensus 78 i~v~~~~~p~~~~w~~~gvDiVie~tG~-~~s~~~a~~hl~aGak~ViiSap 128 (338)
T PLN02358 78 VTVFGIRNPEDIPWGEAGADFVVESTGV-FTDKDKAAAHLKGGAKKVVISAP 128 (338)
T ss_pred EEEEEcCCcccCcccccCCCEEEEcccc-hhhHHHHHHHHHCCCEEEEeCCC
Confidence 11111 112 36 3689999999854 57888888888889987776654
No 87
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.92 E-value=0.077 Score=52.06 Aligned_cols=54 Identities=33% Similarity=0.281 Sum_probs=46.5
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
-|++-.+..++..++..|.++++++++|.|. |.+|+.+++.|.+.|++|+.+ +.
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R 60 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GR 60 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cC
Confidence 4777788888888988899999999999995 999999999999999986544 44
No 88
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.92 E-value=0.15 Score=55.31 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=70.5
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc------ccCC--ce
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~------~~p~--a~ 487 (636)
.||+|=|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-...|.+..-.. .+.+ ..
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~ 73 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence 4899999999999999997754 6899999874 255566556655444454432111 0111 11
Q ss_pred ee---CCCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 488 ~i---~~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
.. ++++ .| +..+|+++.|+.. ..+.+.|...++.|||.|.=.|
T Consensus 74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSa 121 (331)
T PRK15425 74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKHITAGAKKVVMTG 121 (331)
T ss_pred EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHHHHCCCEEEEeCC
Confidence 22 2222 46 4689999999854 4788888888888998886655
No 89
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.91 E-value=0.55 Score=53.74 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=86.8
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~ 490 (636)
|.+|.|+||.|.|+|++|+.+|+.|...|.+|++. |. . .+.+.. . ++ +.++.+
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~-------~-~~~~~~---~----------~~-----g~~~~~ 185 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY-DP-------Y-ISPERA---E----------QL-----GVELVD 185 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC-------C-CChhHH---H----------hc-----CCEEcC
Confidence 44799999999999999999999999999997654 32 2 111110 0 00 122221
Q ss_pred -CCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHH-HHHHHHCCce-Eecccccccccc
Q 006671 491 -EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVL-IAPAMAAGAGGV 561 (636)
Q Consensus 491 -~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGIl-viPD~~aNAGGV 561 (636)
-++++ ..||+++-|.. .+.|+.+.-..+ +.++ +++--|=++ +..+| .+.|++..|. .+=|...+=--
T Consensus 186 ~l~ell-~~aDvV~l~lPlt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~- 261 (525)
T TIGR01327 186 DLDELL-ARADFITVHTPLTPETRGLIGAEELAKM-KKGV-IIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP- 261 (525)
T ss_pred CHHHHH-hhCCEEEEccCCChhhccCcCHHHHhcC-CCCe-EEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC-
Confidence 12233 37898876655 566666555544 3455 444555555 45554 4677777664 33443332211
Q ss_pred eeecchhccc---cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006671 562 VAGELELNQE---CNMVHWSPEDFESKLQEAMKQTYQRAL 598 (636)
Q Consensus 562 ivS~~E~~qN---~~~~~ws~eeV~~rL~~~m~~~~~~v~ 598 (636)
.-+.+--..| .+|+.|.-.+...++.+.+.+.+.+.+
T Consensus 262 ~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~ 301 (525)
T TIGR01327 262 TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDAL 301 (525)
T ss_pred CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 0111111122 356777666666666444444444433
No 90
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.90 E-value=0.062 Score=57.08 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=44.4
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGN-VG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..|++..+ ++.+.+++|++|+|.|-|+ ||..+|.+|...|++ |+++++
T Consensus 138 ~PcTp~ai~~ll----~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gat-Vtv~~s 190 (286)
T PRK14175 138 VPCTPLGIMEIL----KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNAS-VTILHS 190 (286)
T ss_pred CCCcHHHHHHHH----HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeC
Confidence 468988886554 5568899999999999998 999999999999999 567776
No 91
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.13 Score=54.58 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=43.5
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006671 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGN-VG~~aAe~L~e~GAkVVaVSDs 448 (636)
..|-+|++..++ +.+.+++|++|+|.|.|+ ||..++..|.+.|+. |+|+++
T Consensus 140 p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~ 191 (283)
T PRK14192 140 SATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHS 191 (283)
T ss_pred CCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 577777766554 568899999999999998 999999999999995 788876
No 92
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.86 E-value=0.14 Score=55.14 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=33.1
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
+.+|.||||-|.|+|++|+.+|+.|...|.+|++.+=
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECC
Confidence 4578999999999999999999999999999876543
No 93
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.79 E-value=0.13 Score=54.96 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=44.0
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 393 EATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+|..||+ ++|++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++++
T Consensus 141 PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vt~chs 192 (294)
T PRK14187 141 PCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCT-VTTVHS 192 (294)
T ss_pred CcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCE-EEEeCC
Confidence 68988876 4556678999999999999 678999999999999999 678877
No 94
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.73 E-value=0.56 Score=50.49 Aligned_cols=109 Identities=12% Similarity=0.226 Sum_probs=65.0
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHH-HCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~-e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i 489 (636)
+.+|.|+|+.|.|+|++|+.+|+.|. ..|.+|++ .|... +.+.. ..+ +.++.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~-~~~~~--------~~~~~-------------~~~-----~~~~~ 192 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY-NARRH--------HKEAE-------------ERF-----NARYC 192 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE-ECCCC--------chhhH-------------Hhc-----CcEec
Confidence 44799999999999999999999997 89999764 34311 00000 000 12222
Q ss_pred CCCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCCC-CHHH-HHHHHHCCce
Q 006671 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMPC-TPEA-VDVLKKANVL 549 (636)
Q Consensus 490 ~~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P~-T~eA-~~iL~~rGIl 549 (636)
+-++++ ..|||++-+.. .+.|+.+.-.++ +.++ +++--|-+++ ..+| .+.|++.-|.
T Consensus 193 ~l~ell-~~sDvv~lh~plt~~T~~li~~~~l~~m-k~ga-~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 193 DLDTLL-QESDFVCIILPLTDETHHLFGAEQFAKM-KSSA-IFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred CHHHHH-HhCCEEEEeCCCChHHhhccCHHHHhcC-CCCe-EEEECCCccccCHHHHHHHHHcCCee
Confidence 222222 37888877655 355666655554 3344 4555666774 4444 3666665553
No 95
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.71 E-value=0.65 Score=48.59 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g 474 (636)
.+.|.+.++++ ..+.++.+++|+|.|.|.+|+.++..|...|++-|.|.+.+ .+++..+.+ .-.
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~----------~~~a~~l~~---~~~ 168 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT----------VERAEELAK---LFG 168 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHH---Hhh
Confidence 45666655542 24668999999999999999999999999995447777762 233322221 111
Q ss_pred CccccccccCCcee-eCCCCccccccceEecCCCcCccc-----hhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCc
Q 006671 475 SLRDYSKTYARSKY-YDEAKPWNERCDVAFPCASQNEID-----QSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV 548 (636)
Q Consensus 475 ~l~~y~~~~p~a~~-i~~~eil~~~cDIliPcA~~n~It-----~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGI 548 (636)
.. ....+ .+..+. -.++||+|=|.....-. .-+...| ..-.+|++-.-.|....-.+.-+++|+
T Consensus 169 ~~-------~~~~~~~~~~~~-~~~~DivInaTp~g~~~~~~~~~~~~~~l--~~~~~v~DivY~P~~T~ll~~A~~~G~ 238 (278)
T PRK00258 169 AL-------GKAELDLELQEE-LADFDLIINATSAGMSGELPLPPLPLSLL--RPGTIVYDMIYGPLPTPFLAWAKAQGA 238 (278)
T ss_pred hc-------cceeecccchhc-cccCCEEEECCcCCCCCCCCCCCCCHHHc--CCCCEEEEeecCCCCCHHHHHHHHCcC
Confidence 00 00111 010111 14689999888755422 1122333 235778888888843344555677777
Q ss_pred eEec
Q 006671 549 LIAP 552 (636)
Q Consensus 549 lviP 552 (636)
.++.
T Consensus 239 ~~~~ 242 (278)
T PRK00258 239 RTID 242 (278)
T ss_pred eecC
Confidence 6653
No 96
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.69 E-value=0.15 Score=45.54 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=70.6
Q ss_pred cEEEEecCccHHHHHHHHHHHC--CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~--GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~e 493 (636)
.||.|+|+|+.|+.-...+.+. +.++++|+|. +.+..... .+. + +...+++ ++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~----------~~~~~~~~---~~~----------~-~~~~~~~~~~ 56 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP----------DPERAEAF---AEK----------Y-GIPVYTDLEE 56 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS----------SHHHHHHH---HHH----------T-TSEEESSHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC----------CHHHHHHH---HHH----------h-cccchhHHHH
Confidence 3799999999999888777765 6799999997 23332211 111 1 1122222 34
Q ss_pred ccc-cccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHH---HHHHHCCceEe
Q 006671 494 PWN-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAV---DVLKKANVLIA 551 (636)
Q Consensus 494 il~-~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~---~iL~~rGIlvi 551 (636)
+++ .++|+++=|... ..+.+.+...++.|..+++|=-=.....++. +..+++|+.+.
T Consensus 57 ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 57 LLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred HHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 554 479999987754 5588888888899999999952111223444 34467776654
No 97
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.63 E-value=0.15 Score=55.48 Aligned_cols=106 Identities=16% Similarity=0.257 Sum_probs=70.2
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccc------cCC--ce
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT------YAR--SK 487 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~------~p~--a~ 487 (636)
.||+|-|||-+|+.+.+.+.+. ...||+|-|.. .|.+.+..|+++-...|++..-... ..+ ..
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~--------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPF--------MTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCC--------CChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 4899999999999999997754 68999998742 2445554455443334443221100 001 11
Q ss_pred eeC---CCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 488 YYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 488 ~i~---~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
.+. +.+ +| +..+|+++.|+.. ..+.+.|...++.||+.|.=.|
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~-~~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGV-FLTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecch-hcCHHHHHHHhhCCCEEEEeCC
Confidence 111 222 47 4689999999854 4888888888888999998777
No 98
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.19 Score=53.28 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
...|..|++.. |++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++++
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~At-Vt~chs 190 (278)
T PRK14172 138 LPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENAT-VTICHS 190 (278)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 46898887654 55668899999999999 788999999999999998 688886
No 99
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.61 E-value=0.17 Score=55.98 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=69.5
Q ss_pred cEEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc-------ccCC-
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR- 485 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~---GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~-------~~p~- 485 (636)
.+|+|.|||-||+.+.+.|.+. ...|++|-|. .|++.+..|+.+-...|++..-.+ .+.+
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~---------~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk 131 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT---------GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGK 131 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC---------CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCE
Confidence 5899999999999999999876 4688998774 245555555554444343322110 0111
Q ss_pred -ceeeC---CCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 486 -SKYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 486 -a~~i~---~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
....+ +++ .| +..+||++.|+.. ..+.+.|...++.|||.|.=.|
T Consensus 132 ~I~v~~~~dp~~~~w~~~gvDiVie~TG~-f~s~~~a~~hl~aGAkkV~iSa 182 (395)
T PLN03096 132 VIKVVSDRNPLNLPWGELGIDLVIEGTGV-FVDREGAGKHIQAGAKKVLITA 182 (395)
T ss_pred EEEEEEcCCcccccccccCCCEEEECcch-hhhHHHHHHHHHCCCEEEEeCC
Confidence 11222 222 46 3699999999854 4788888888888998887665
No 100
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.59 E-value=0.16 Score=54.36 Aligned_cols=52 Identities=25% Similarity=0.269 Sum_probs=44.5
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++++
T Consensus 147 ~PcTp~avi~lL----~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~AT-Vtvchs 199 (299)
T PLN02516 147 LPCTPKGCLELL----SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADAT-VTVVHS 199 (299)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 478999876555 4568999999999999 677999999999999998 688877
No 101
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=94.43 E-value=0.19 Score=54.33 Aligned_cols=104 Identities=16% Similarity=0.295 Sum_probs=68.0
Q ss_pred EEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc-------ccCCc-
Q 006671 418 RCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYARS- 486 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~---GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~-------~~p~a- 486 (636)
||+|=|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-...|.+..-.. .+.+-
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~ 71 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL---------TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKF 71 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC---------CCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeE
Confidence 589999999999999998865 5799999874 355666556554433443321110 11111
Q ss_pred --eee---CCCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 487 --KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 487 --~~i---~~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
... ++++ .| +..+|+++.|+.. ..+.+.|..-++.|||.|.=.|
T Consensus 72 ~i~v~~~~dp~~~~w~~~gvDiVle~tG~-~~s~~~a~~hl~~Gak~V~iSa 122 (327)
T TIGR01534 72 VIVVASERDPSDLPWKALGVDIVIECTGK-FRDKEKLEGHLEAGAKKVLISA 122 (327)
T ss_pred EEEEEecCCcccCchhhcCCCEEEEccch-hhcHHHHHHHhhCCCEEEEeCC
Confidence 112 2222 46 3689999999854 4788888887788988876554
No 102
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=94.41 E-value=0.28 Score=53.32 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=70.8
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc------ccCC--ce
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~------~~p~--a~ 487 (636)
.+|+|.|||.+|+.+.+.+.+. ...++++-|. ..|.+.+..|+++-...|++..-.. .+.+ .+
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~--------~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP--------AGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 4899999999999999998765 5788888764 2356666666655444454422111 0111 11
Q ss_pred ee---CCCC-ccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCC
Q 006671 488 YY---DEAK-PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 488 ~i---~~~e-il~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (636)
.. +.++ .|. .+|+++.|+.. ..+.+.|...++.||+.|.=.|-
T Consensus 75 v~~~~~~~~~~w~-gvDiVle~tG~-~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 75 TTQNKAIADTDWS-GCDVVIEASGV-MKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred EEecCChhhCCcc-CCCEEEEccch-hhcHHHHHHHHHCCCEEEEECCC
Confidence 22 2222 577 99999999955 47888888888889988865543
No 103
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.35 E-value=0.24 Score=52.67 Aligned_cols=95 Identities=18% Similarity=0.307 Sum_probs=66.8
Q ss_pred CCCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHH
Q 006671 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (636)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~ 469 (636)
-..+|..||+.. |++.+.+++||+|+|.| +..||.-+|.+|...||. |+++.++. -|+.
T Consensus 135 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vtichs~T-------~~l~-------- 194 (282)
T PRK14169 135 VVASTPYGIMAL----LDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDAT-VTIAHSKT-------RNLK-------- 194 (282)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEECCCC-------CCHH--------
Confidence 347898888655 45568999999999999 678999999999999998 57776622 1211
Q ss_pred HhhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCCC
Q 006671 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 470 k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
++ ...+||+|-|.. .+.|+.+. ++.|+-+|=-|-|-
T Consensus 195 --------~~----------------~~~ADIvI~AvG~p~~i~~~~----vk~GavVIDvGin~ 231 (282)
T PRK14169 195 --------QL----------------TKEADILVVAVGVPHFIGADA----VKPGAVVIDVGISR 231 (282)
T ss_pred --------HH----------------HhhCCEEEEccCCcCccCHHH----cCCCcEEEEeeccc
Confidence 11 136788888775 46666664 34477666555553
No 104
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.32 E-value=0.76 Score=52.62 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~ 490 (636)
+.+|.|+||.|.|+|++|+.+|+.|...|++|++.. . .. +.+.. . . .+.++.+
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d-~-------~~-~~~~~---~----------~-----~g~~~~~ 187 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYD-P-------YI-SPERA---A----------Q-----LGVELVS 187 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEC-C-------CC-ChhHH---H----------h-----cCCEEEc
Confidence 446899999999999999999999999999976543 2 11 11110 0 0 0222332
Q ss_pred CCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHHH-HHHHHCCce
Q 006671 491 EAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV-DVLKKANVL 549 (636)
Q Consensus 491 ~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~-~iL~~rGIl 549 (636)
-++++. .||+++-|.. .+.|+.+....+ +.++-+| --|-++ +..+|- +.|++.-|.
T Consensus 188 l~ell~-~aDiV~l~lP~t~~t~~li~~~~l~~m-k~ga~lI-N~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 188 LDELLA-RADFITLHTPLTPETRGLIGAEELAKM-KPGVRII-NCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred HHHHHh-hCCEEEEccCCChHhhcCcCHHHHhcC-CCCeEEE-ECCCCceeCHHHHHHHHhcCCee
Confidence 233333 7888876655 355665544444 3355444 455555 455553 666665553
No 105
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.26 E-value=0.23 Score=54.42 Aligned_cols=93 Identities=25% Similarity=0.290 Sum_probs=66.5
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHH
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k 470 (636)
..+|..||+ ++|++.+.+++||+|+|+| +..||.-++.+|.+.+|. |+++.++- -|+
T Consensus 211 ~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~AT-VTicHs~T-------~nl---------- 268 (364)
T PLN02616 211 VPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHSRT-------KNP---------- 268 (364)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCe-EEEeCCCC-------CCH----------
Confidence 478999876 4556678999999999999 778999999999999998 67777621 011
Q ss_pred hhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCC
Q 006671 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN 532 (636)
.++ ...+||+|-|+. .+.|+.+.. +.+|-+|==|-|
T Consensus 269 ------~~~----------------~r~ADIVIsAvGkp~~i~~d~v----K~GAvVIDVGIn 305 (364)
T PLN02616 269 ------EEI----------------TREADIIISAVGQPNMVRGSWI----KPGAVVIDVGIN 305 (364)
T ss_pred ------HHH----------------HhhCCEEEEcCCCcCcCCHHHc----CCCCEEEecccc
Confidence 111 236799988875 466676643 447766655555
No 106
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.20 E-value=0.14 Score=50.12 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfG-NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
-..+|..|++..+ ++.+.+++||+|+|.|-+ .||.-++.+|.+.||. |+++++
T Consensus 15 ~~PcTp~aii~lL----~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at-Vt~~h~ 68 (160)
T PF02882_consen 15 FVPCTPLAIIELL----EYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT-VTICHS 68 (160)
T ss_dssp S--HHHHHHHHHH----HHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-E-EEEE-T
T ss_pred CcCCCHHHHHHHH----HhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCe-EEeccC
Confidence 3467888876554 456889999999999965 6999999999999999 677887
No 107
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.16 E-value=0.036 Score=52.12 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=58.8
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCcc
Q 006671 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (636)
Q Consensus 416 GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (636)
..+|.|+|.|+||.++++.|.+.|..|++|... ++ +.... ...+ .+.....+..++.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr-----s~-----~sa~~----------a~~~---~~~~~~~~~~~~~ 66 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR-----SP-----ASAER----------AAAF---IGAGAILDLEEIL 66 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC-----HH------HHHH----------HHC-----TT-----TTGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC-----Cc-----ccccc----------cccc---ccccccccccccc
Confidence 468999999999999999999999999988765 11 11100 1111 1223333333333
Q ss_pred ccccceEecCCCcCccchhhHHHhhhc----CceEEEeCCCCCCCHHHHHHHHHCCceEe
Q 006671 496 NERCDVAFPCASQNEIDQSDAINLVNS----GCRILVEGSNMPCTPEAVDVLKKANVLIA 551 (636)
Q Consensus 496 ~~~cDIliPcA~~n~It~enA~~l~~~----~akiVvEgAN~P~T~eA~~iL~~rGIlvi 551 (636)
.++|+++-|..-+.|.+ -+..|... .=++|+=-+ +-.+-+.-+-++++|..++
T Consensus 67 -~~aDlv~iavpDdaI~~-va~~La~~~~~~~g~iVvHtS-Ga~~~~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 67 -RDADLVFIAVPDDAIAE-VAEQLAQYGAWRPGQIVVHTS-GALGSDVLAPARERGAIVA 123 (127)
T ss_dssp -CC-SEEEE-S-CCHHHH-HHHHHHCC--S-TT-EEEES--SS--GGGGHHHHHTT-EEE
T ss_pred -ccCCEEEEEechHHHHH-HHHHHHHhccCCCCcEEEECC-CCChHHhhhhHHHCCCeEE
Confidence 38999999988777653 34555332 234554322 2344555566777776543
No 108
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.16 E-value=0.22 Score=53.02 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=66.9
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHH
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k 470 (636)
..+|..||+.. |++.+.++.||+|+|.| +..||.-++.+|.+.||. |+++.+.. -|+.
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vtichs~T-------~~l~--------- 195 (284)
T PRK14170 137 VPCTPAGIIEL----IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENAT-VTIAHSRT-------KDLP--------- 195 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC-------CCHH---------
Confidence 46898887655 45679999999999999 677899999999999998 67777622 1111
Q ss_pred hhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCCC
Q 006671 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
++ ...+||+|-|+. .+.|+.+.. +.++-+|=-|-|-
T Consensus 196 -------~~----------------~~~ADIvI~AvG~~~~i~~~~v----k~GavVIDvGin~ 232 (284)
T PRK14170 196 -------QV----------------AKEADILVVATGLAKFVKKDYI----KPGAIVIDVGMDR 232 (284)
T ss_pred -------HH----------------HhhCCEEEEecCCcCccCHHHc----CCCCEEEEccCcc
Confidence 11 136799988876 466666643 4477766666664
No 109
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.15 E-value=0.34 Score=50.60 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=66.6
Q ss_pred cEEEEec-CccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CC
Q 006671 417 LRCVVSG-SGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (636)
Q Consensus 417 krVaIqG-fGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~e 493 (636)
.+|+|.| +|.+|+..++.+.+ .+..+|++.|+...- ..|-|..++ . + ...+ +....++ ++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~--~~~~~~~~~---~------~-~~~~-----gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSS--LQGTDAGEL---A------G-IGKV-----GVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--ccCCCHHHh---c------C-cCcC-----CceeeCCHHH
Confidence 4899999 79999999998876 689999999942210 013333321 0 0 0000 2222222 22
Q ss_pred ccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHH
Q 006671 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVD 541 (636)
Q Consensus 494 il~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~ 541 (636)
+ ..++|++|-|+ ....+.+++...++.|+.+|+|-- ..|++..+
T Consensus 65 l-~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~ 108 (266)
T TIGR00036 65 V-ETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT--GFSEEDKQ 108 (266)
T ss_pred h-cCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC--CCCHHHHH
Confidence 3 44689999998 445567778888888999999875 45665443
No 110
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.14 E-value=0.22 Score=53.24 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=65.7
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHh
Q 006671 393 EATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (636)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~ 471 (636)
.+|..||+. +|++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++.+.. + |+
T Consensus 139 PcTp~aii~----lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~at-Vtv~hs~T----~---~l----------- 195 (297)
T PRK14186 139 SCTPAGVMR----LLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANAT-VTIAHSRT----Q---DL----------- 195 (297)
T ss_pred CCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCCCC----C---CH-----------
Confidence 588888765 455668999999999999 678999999999999998 57776521 0 11
Q ss_pred hcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCCC
Q 006671 472 QQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
.++ ...+||+|-|.. .+.|+.+.. +.++-+|=-|-|-
T Consensus 196 -----~~~----------------~~~ADIvIsAvGkp~~i~~~~i----k~gavVIDvGin~ 233 (297)
T PRK14186 196 -----ASI----------------TREADILVAAAGRPNLIGAEMV----KPGAVVVDVGIHR 233 (297)
T ss_pred -----HHH----------------HhhCCEEEEccCCcCccCHHHc----CCCCEEEEecccc
Confidence 111 136799988875 466666643 4477666556563
No 111
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.12 E-value=0.22 Score=53.02 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=44.1
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+.. |++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++.+
T Consensus 135 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vtichs 187 (287)
T PRK14173 135 EPCTPAGVVRL----LKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDAT-VTLAHS 187 (287)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEeCC
Confidence 46898888655 45678999999999999 788999999999999998 677776
No 112
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.10 E-value=0.88 Score=47.91 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHhC--CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 396 GYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 396 G~GV~~~~~~~l~~~g--~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|.+.+++. .+ .+++|++|+|.|.|-+|+.++..|.++|++-|.|.+.
T Consensus 107 ~~G~~~~l~~----~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 107 WDGIAGALAN----IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred HHHHHHHHHh----hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 6777777653 34 2578999999999999999999999999877888876
No 113
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.08 E-value=0.23 Score=52.73 Aligned_cols=93 Identities=25% Similarity=0.327 Sum_probs=66.4
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHH
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k 470 (636)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++++.- + |
T Consensus 137 ~PcTp~avi~lL----~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vt~chs~T----~---n----------- 193 (282)
T PRK14166 137 LPCTPLGVMKLL----KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGAT-VSVCHIKT----K---D----------- 193 (282)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC----C---C-----------
Confidence 368988887655 4568899999999999 678999999999999999 67877621 1 1
Q ss_pred hhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCC
Q 006671 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN 532 (636)
+.++ ...+||+|-|+. .+.|+.+.. +.+|-+|=-|-|
T Consensus 194 -----l~~~----------------~~~ADIvIsAvGkp~~i~~~~v----k~GavVIDvGin 231 (282)
T PRK14166 194 -----LSLY----------------TRQADLIIVAAGCVNLLRSDMV----KEGVIVVDVGIN 231 (282)
T ss_pred -----HHHH----------------HhhCCEEEEcCCCcCccCHHHc----CCCCEEEEeccc
Confidence 1111 236799988876 466776643 447766655545
No 114
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.06 E-value=2.6 Score=46.90 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=63.3
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~ 491 (636)
.++.|++|.|.|.|.+|..+++.|...|+.-|.|.+.+ .++...+. ..-+ ...++.
T Consensus 176 ~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs----------~~ra~~la---~~~g-----------~~~i~~ 231 (417)
T TIGR01035 176 GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT----------YERAEDLA---KELG-----------GEAVKF 231 (417)
T ss_pred CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHH---HHcC-----------CeEeeH
Confidence 35889999999999999999999999995556677652 22221111 1111 111111
Q ss_pred CCcc--ccccceEecCC--CcCccchhhHHHhhhc--CceEEEeCCCCC-CCHHH
Q 006671 492 AKPW--NERCDVAFPCA--SQNEIDQSDAINLVNS--GCRILVEGSNMP-CTPEA 539 (636)
Q Consensus 492 ~eil--~~~cDIliPcA--~~n~It~enA~~l~~~--~akiVvEgAN~P-~T~eA 539 (636)
+++. -..+||+|-|. ....|+.+........ +..+|+.-|+-. +.|+.
T Consensus 232 ~~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 232 EDLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred HHHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 1111 13799999995 4566787776654322 234888888522 55554
No 115
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.04 E-value=0.049 Score=48.67 Aligned_cols=36 Identities=33% Similarity=0.468 Sum_probs=30.8
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++|++|+|.|.|+||..-++.|.+.||+|.-+|..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 689999999999999999999999999998777765
No 116
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.02 E-value=0.15 Score=54.22 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=44.4
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGN-VG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+.. +++.+.+++|++|+|.|-++ ||.-++.+|...||. |+++++
T Consensus 139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~at-Vtv~hs 191 (285)
T PRK10792 139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCT-VTVCHR 191 (285)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCe-EEEEEC
Confidence 36898887655 45668899999999999988 999999999999998 677776
No 117
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=93.99 E-value=0.25 Score=55.12 Aligned_cols=104 Identities=16% Similarity=0.238 Sum_probs=67.5
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccc-------cCC--c
Q 006671 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT-------YAR--S 486 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~-------~p~--a 486 (636)
.||.|-|||-.|+.+++.+.+ .+.+||+|-|.. .|.+.+..|+++-...|.+..-++. +.+ .
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~--------~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I 157 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF--------IDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQI 157 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC--------CCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEE
Confidence 499999999999999999875 689999998742 2555555566554444544321110 111 1
Q ss_pred eee---CCCC-ccc-cccceEecCCCcCccchhhHHHhhhcCc-eEEEe
Q 006671 487 KYY---DEAK-PWN-ERCDVAFPCASQNEIDQSDAINLVNSGC-RILVE 529 (636)
Q Consensus 487 ~~i---~~~e-il~-~~cDIliPcA~~n~It~enA~~l~~~~a-kiVvE 529 (636)
+.. ++++ .|. ..+||++.|+.. ..+.+.|..-++.|| |+|+.
T Consensus 158 ~V~~~~dp~~~~w~~~gVDiVlesTG~-f~s~e~a~~hl~aGAkkVVId 205 (421)
T PLN02272 158 KVTSKRDPAEIPWGDFGAEYVVESSGV-FTTVEKASAHLKGGAKKVVIS 205 (421)
T ss_pred EEEecCCcccCcccccCCCEEEEcCch-hccHHHHHHHhhCCCCEEEEC
Confidence 122 2222 464 589999999854 478888887777788 34443
No 118
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=93.98 E-value=0.31 Score=53.07 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=69.7
Q ss_pred cEEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc------ccCC--
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR-- 485 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~---GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~------~~p~-- 485 (636)
.||.|=|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-...|++..-.. .+.+
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT---------SDPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC---------CCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 3899999999999999997764 5789999874 255666656655444454422110 0111
Q ss_pred ceeeC---CCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 486 SKYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 486 a~~i~---~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
..... +++ .| +..+|+++.|+.. ..+.+.|..-++.||+.|.=.|
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG~-f~s~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTGV-FVTKEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccch-hhhHHHHHHHhhCCcEEEEeCC
Confidence 11111 222 46 4699999999854 5788888877788998887776
No 119
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.92 E-value=0.16 Score=46.40 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=59.1
Q ss_pred EEEEec-CccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCcc
Q 006671 418 RCVVSG-SGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (636)
Q Consensus 418 rVaIqG-fGNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (636)
||+|.| .|.||+.+++.|.+. ...++.+..++- ..|..+... . +....+ ......+ ...-
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~------~---~~~~~~----~~~~~~~-~~~~ 62 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEV------F---PHPKGF----EDLSVED-ADPE 62 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHT------T---GGGTTT----EEEBEEE-TSGH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehh------c---cccccc----cceeEee-cchh
Confidence 689999 999999999999884 567777777621 256554432 0 011111 1111111 1111
Q ss_pred c-cccceEecCCCcCccchhhHHHhhhcCceEEEeCCCC
Q 006671 496 N-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 496 ~-~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
. .++||+|-|. ......+.++.+++.+|++|==++..
T Consensus 63 ~~~~~Dvvf~a~-~~~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 63 ELSDVDVVFLAL-PHGASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp HHTTESEEEE-S-CHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred HhhcCCEEEecC-chhHHHHHHHHHhhCCcEEEeCCHHH
Confidence 1 5899999985 45556788888888899777444333
No 120
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.90 E-value=0.27 Score=52.28 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=66.6
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHH
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k 470 (636)
..+|..|++..+ ++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++++.- + |+
T Consensus 138 ~PcTp~aii~lL----~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AT-Vt~chs~T----~---dl---------- 195 (282)
T PRK14180 138 ESCTPKGIMTML----REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKAT-VTTCHRFT----T---DL---------- 195 (282)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEEcCCC----C---CH----------
Confidence 468988887655 4568899999999999 778999999999999998 57777621 0 11
Q ss_pred hhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCCC
Q 006671 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
.++ ...+||+|-|+. .+.|+.+.. +.++-+|=-|-|-
T Consensus 196 ------~~~----------------~k~ADIvIsAvGkp~~i~~~~v----k~gavVIDvGin~ 233 (282)
T PRK14180 196 ------KSH----------------TTKADILIVAVGKPNFITADMV----KEGAVVIDVGINH 233 (282)
T ss_pred ------HHH----------------hhhcCEEEEccCCcCcCCHHHc----CCCcEEEEecccc
Confidence 111 236799988775 466666543 4477766556553
No 121
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.88 E-value=0.19 Score=53.78 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=43.7
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfG-NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
...|..|++.. |++.+.+++||+|+|.|-| .||..+|..|.+.|+. |++.++
T Consensus 139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat-Vtv~~~ 191 (301)
T PRK14194 139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCS-VTVVHS 191 (301)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEECC
Confidence 36898887655 4556899999999999996 9999999999999999 566665
No 122
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.86 E-value=0.18 Score=51.05 Aligned_cols=117 Identities=18% Similarity=0.099 Sum_probs=74.3
Q ss_pred CCcchhHHHHHHHHHH-----HHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHH
Q 006671 392 TEATGYGLVFFAQLIL-----ADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l-----~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~ 465 (636)
...|..||+..++..= ...+.+++||+|+|.| +..||.-+|.+|.+.||. |+++|++|..+-..+-..
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~At-Vti~~~~~~~~~~~~~~~----- 106 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGAR-VYSVDINGIQVFTRGESI----- 106 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEEecCccccccccccc-----
Confidence 4789999887766430 0014489999999999 677999999999999999 679998887664433210
Q ss_pred HHHHHhhcCCccccccccCCceeeCCCCcc--ccccceEecCCCc-Cc-cchhhHHHhhhcCceEEEeCCCC
Q 006671 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPW--NERCDVAFPCASQ-NE-IDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 466 L~~~k~~~g~l~~y~~~~p~a~~i~~~eil--~~~cDIliPcA~~-n~-It~enA~~l~~~~akiVvEgAN~ 533 (636)
.+.+ ...+..+ ..+. ...+||+|=|... +. |+.+.. +.+|-+|==|-|.
T Consensus 107 -~hs~-------------t~~~~~~-~~l~~~~~~ADIVIsAvG~~~~~i~~d~i----k~GavVIDVGi~~ 159 (197)
T cd01079 107 -RHEK-------------HHVTDEE-AMTLDCLSQSDVVITGVPSPNYKVPTELL----KDGAICINFASIK 159 (197)
T ss_pred -cccc-------------ccccchh-hHHHHHhhhCCEEEEccCCCCCccCHHHc----CCCcEEEEcCCCc
Confidence 0000 0000000 0011 2478999988864 44 677653 3477776566664
No 123
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.85 E-value=0.31 Score=51.84 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=44.0
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHH--CCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA--YGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e--~GAkVVaVSDs 448 (636)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-++.+|.+ .+|. |+++.+
T Consensus 138 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~at-Vtvchs 192 (284)
T PRK14193 138 LPCTPRGIVHLL----RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENAT-VTLCHT 192 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCE-EEEeCC
Confidence 468998887655 4668999999999999 78899999999998 7888 678876
No 124
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.68 E-value=0.29 Score=52.17 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=43.9
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+. +|++.+.+++||+|+|.| +..||.-++.+|.+.||. |+++.|
T Consensus 139 ~PcTp~av~~----lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~AT-Vtichs 191 (288)
T PRK14171 139 IPCTALGCLA----VIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCS-VTICHS 191 (288)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 4689888655 455668999999999999 677999999999999998 678887
No 125
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.67 E-value=0.15 Score=51.09 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
.|..++|.|.|.|-+|..+|+.|...|..=+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4788999999999999999999999998667888764
No 126
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=93.64 E-value=0.19 Score=52.38 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=68.1
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CCc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKP 494 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~ei 494 (636)
.||+|.|+|++|+..++.|.+. +..+++|.+.. .. .++. ... +. .+...+++ +++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~-----~~---~~~~---~~~------~~------~~~~~~~d~~~l 58 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE-----HS---IDAV---RRA------LG------EAVRVVSSVDAL 58 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC-----CC---HHHH---hhh------hc------cCCeeeCCHHHh
Confidence 4899999999999999998875 67888887541 11 1110 000 00 01122222 234
Q ss_pred cccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHH----HHHHHHHCCce-Eec
Q 006671 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPE----AVDVLKKANVL-IAP 552 (636)
Q Consensus 495 l~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~e----A~~iL~~rGIl-viP 552 (636)
..++|+++.|+... .+.+.+...++.|+.+|++-.=.-..++ ..+..+++|+. ++|
T Consensus 59 -~~~~DvVve~t~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~ 119 (265)
T PRK13303 59 -PQRPDLVVECAGHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLL 119 (265)
T ss_pred -ccCCCEEEECCCHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEe
Confidence 56799999999876 4578888888999999986321011222 23455677754 443
No 127
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.63 E-value=0.16 Score=62.34 Aligned_cols=117 Identities=12% Similarity=0.056 Sum_probs=78.1
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCC-CE------------EEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYG-AI------------PVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK 481 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~G-Ak------------VVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~ 481 (636)
..++|+|.|.|.||+..|+.|.+.. +. +|+|+|. +.+++..+. +.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~----------~~~~a~~la---~~--------- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL----------YLKDAKETV---EG--------- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC----------CHHHHHHHH---Hh---------
Confidence 4679999999999999999998753 33 6888886 233322221 11
Q ss_pred ccCC---cee-eCC-CCccc--cccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEeccc
Q 006671 482 TYAR---SKY-YDE-AKPWN--ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAM 554 (636)
Q Consensus 482 ~~p~---a~~-i~~-~eil~--~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~ 554 (636)
+|+ ... +++ +++.. .++|++|=|... ..+.+.|..-++.|+.+|+|.-..+.+.+.++..+++|+.++|+.
T Consensus 626 -~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~ 703 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEM 703 (1042)
T ss_pred -cCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECC
Confidence 112 111 222 33443 369999988765 568888888888999999998333333444566788999998865
Q ss_pred c
Q 006671 555 A 555 (636)
Q Consensus 555 ~ 555 (636)
-
T Consensus 704 G 704 (1042)
T PLN02819 704 G 704 (1042)
T ss_pred c
Confidence 3
No 128
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.61 E-value=0.31 Score=51.79 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=43.8
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+.. |++.+.+++||+|+|.| +..||.-++.+|.+.+|. |+++.+
T Consensus 137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~At-Vtichs 189 (282)
T PRK14182 137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHAT-VTIAHS 189 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 46898887655 45668899999999999 678999999999999998 677776
No 129
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=93.57 E-value=0.41 Score=52.26 Aligned_cols=105 Identities=15% Similarity=0.265 Sum_probs=71.2
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc------ccCC--ce
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~------~~p~--a~ 487 (636)
.||.|-|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-...|.+..-.. .+.+ ..
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~---------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~ 73 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIR 73 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEE
Confidence 4899999999999999997754 5799999874 356666666655444454432111 0111 12
Q ss_pred ee---CCCC-cc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 488 ~i---~~~e-il-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
.. ++++ .| +..+|+++.|+.. ..+.+.|...++.||+.|.=.|
T Consensus 74 v~~~~dp~~~~W~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 74 LLNNRDPKELPWTDLGIDIVIEATGK-FNSKEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEcCChhhCcccccCCCEEEEccch-hhhHhHHHHHHHcCCeEEEeCC
Confidence 22 2333 47 4689999999854 4788888888888999887665
No 130
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.53 E-value=0.21 Score=53.07 Aligned_cols=52 Identities=25% Similarity=0.410 Sum_probs=43.0
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccH-HHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI-AMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNV-G~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..|++. +|++.+.+++|++|+|.|.|++ |.-++.+|.+.|+.| +++++
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atV-t~~hs 190 (285)
T PRK14189 138 RPCTPYGVMK----MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATV-TICHS 190 (285)
T ss_pred cCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEE-EEecC
Confidence 4689888765 4566789999999999998777 999999999999994 55554
No 131
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.49 E-value=1 Score=48.75 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=68.4
Q ss_pred hCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee
Q 006671 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (636)
Q Consensus 410 ~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i 489 (636)
++.++.|||+-|.|+|.+|+.+|+.+.-.|.+|+. . |+.+- .+.. +. -+++|+
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y-~-------~~~~~-~~~~-------------~~-----~~~~y~ 192 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLY-Y-------DRSPN-PEAE-------------KE-----LGARYV 192 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEE-E-------CCCCC-hHHH-------------hh-----cCceec
Confidence 46789999999999999999999999999999643 3 33332 1110 00 124455
Q ss_pred CCCCccccccceEecCCC-----cCccchhhHHHhhhcCceEEEeCCCCC-CCHHH-HHHHHHCCce
Q 006671 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA-VDVLKKANVL 549 (636)
Q Consensus 490 ~~~eil~~~cDIliPcA~-----~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA-~~iL~~rGIl 549 (636)
+-++++ ..+||++-... .+.|+.+.-.++ +.++ +++--|=++ +..+| .+.|++.-|-
T Consensus 193 ~l~ell-~~sDii~l~~Plt~~T~hLin~~~l~~m-k~ga-~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 193 DLDELL-AESDIISLHCPLTPETRHLINAEELAKM-KPGA-ILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred cHHHHH-HhCCEEEEeCCCChHHhhhcCHHHHHhC-CCCe-EEEECCCccccCHHHHHHHHHhCCcc
Confidence 533333 37888866554 355666655554 3344 445555666 34443 5778777664
No 132
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=93.49 E-value=0.14 Score=54.81 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred CCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (636)
+..+|+|.|.|++|...+.++.+ .+..+++|+|. |++- +.+ . ..+..| +..+ |.+. ++
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi-----d~es---~gl---a-~A~~~G-i~~~---~~~i-----e~ 61 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI-----DPES---DGL---A-RARRLG-VATS---AEGI-----DG 61 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC-----Chhh---HHH---H-HHHHcC-CCcc---cCCH-----HH
Confidence 35789999999999987777765 57899999997 4421 111 1 111111 1110 1111 22
Q ss_pred ccc----cccceEecCCCcCccchhhHHHhhhcCceEEEeCC--CCC-CCHH--HHHHHH--HCCceEecccccccccce
Q 006671 494 PWN----ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS--NMP-CTPE--AVDVLK--KANVLIAPAMAAGAGGVV 562 (636)
Q Consensus 494 il~----~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA--N~P-~T~e--A~~iL~--~rGIlviPD~~aNAGGVi 562 (636)
++. .++|+++-|+ .+..+.+.+..+.+.|+.+|.+-. ++| +-|+ .++.+. ..++...|+-..+.-=++
T Consensus 62 LL~~~~~~dIDiVf~AT-~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~A 140 (302)
T PRK08300 62 LLAMPEFDDIDIVFDAT-SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAA 140 (302)
T ss_pred HHhCcCCCCCCEEEECC-CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHHH
Confidence 332 3689999877 556889999999999999998864 566 2232 223343 347777776555443322
Q ss_pred ------eecchhc---cccCCCCCCHHHHHH
Q 006671 563 ------AGELELN---QECNMVHWSPEDFES 584 (636)
Q Consensus 563 ------vS~~E~~---qN~~~~~ws~eeV~~ 584 (636)
+.|-|++ +-.+--.|++.-+++
T Consensus 141 l~~v~~~~~~eIvat~~s~s~g~gtr~nidE 171 (302)
T PRK08300 141 VSRVAPVHYAEIVASIASKSAGPGTRANIDE 171 (302)
T ss_pred hcccCcCceeeeeeeehhhccCCcccccHHH
Confidence 2466666 333334576655544
No 133
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.47 E-value=0.28 Score=55.47 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=70.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC-CccccccccCCceeeCCCCcc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-SLRDYSKTYARSKYYDEAKPW 495 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g-~l~~y~~~~p~a~~i~~~eil 495 (636)
.+|.|.|.|++|..+|+.|.+.|.+ |.+-|. +.++.+.+.+.....+ .+.. .-+.+++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~-V~v~dr----------~~~~~~~l~~~~~~~g~~i~~---------~~s~~e~v 61 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFK-ISVYNR----------TYEKTEEFVKKAKEGNTRVKG---------YHTLEELV 61 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCe-EEEEeC----------CHHHHHHHHHhhhhcCCccee---------cCCHHHHH
Confidence 3799999999999999999999998 455565 3344333332111111 0100 00112233
Q ss_pred c--cccceEecCCCcCccchhhHHHhhh--cCceEEEeCCCCC--CCHHHHHHHHHCCceEe
Q 006671 496 N--ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNMP--CTPEAVDVLKKANVLIA 551 (636)
Q Consensus 496 ~--~~cDIliPcA~~n~It~enA~~l~~--~~akiVvEgAN~P--~T~eA~~iL~~rGIlvi 551 (636)
. .++|+++-|.+......+....|.. ..-++|+.+.|.- .|.+-.+.+.++||.|+
T Consensus 62 ~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fl 123 (470)
T PTZ00142 62 NSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYL 123 (470)
T ss_pred hcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 2 1589777776655544444444431 2347889999963 56666788999999997
No 134
>PRK11579 putative oxidoreductase; Provisional
Probab=93.43 E-value=0.51 Score=50.53 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=70.1
Q ss_pred cEEEEecCccHHH-HHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC-CCC
Q 006671 417 LRCVVSGSGKIAM-HVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EAK 493 (636)
Q Consensus 417 krVaIqGfGNVG~-~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~-~~e 493 (636)
.||.|+|+|.+|. +.+..+.. .++++++|+|.+ .+++ . + . +++....+ -++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~----------~~~~---~---~------~----~~~~~~~~~~~e 58 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD----------ATKV---K---A------D----WPTVTVVSEPQH 58 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC----------HHHH---H---h------h----CCCCceeCCHHH
Confidence 5899999999997 45666655 479999999972 2221 1 1 1 12222222 244
Q ss_pred ccc-cccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHH---HHCCceEecc
Q 006671 494 PWN-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL---KKANVLIAPA 553 (636)
Q Consensus 494 il~-~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL---~~rGIlviPD 553 (636)
++. .++|+++=|. .+..+.+.+...++.|..++||=-=..+..||++++ +++|+.+...
T Consensus 59 ll~~~~vD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~ 121 (346)
T PRK11579 59 LFNDPNIDLIVIPT-PNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVF 121 (346)
T ss_pred HhcCCCCCEEEEcC-CcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 553 4789999775 556788888888899999999752111234455443 6778766543
No 135
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.38 E-value=0.27 Score=52.59 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=43.3
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
..+|..||+..+ ++.+.+++||+|+|.| +|.||..+|..|.+.|+.| ++.+
T Consensus 138 ~PcTp~ai~~ll----~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tV-tv~~ 189 (296)
T PRK14188 138 VPCTPLGCMMLL----RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATV-TIAH 189 (296)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEE-EEEC
Confidence 478988886554 5568899999999999 9999999999999999995 5554
No 136
>PRK06141 ornithine cyclodeaminase; Validated
Probab=93.35 E-value=0.67 Score=49.45 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=82.5
Q ss_pred cCccccc-CCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCC
Q 006671 379 TGPRIFW-SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDED 456 (636)
Q Consensus 379 TGKp~~~-GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~Iydpd 456 (636)
||.|+.+ .|.....--||-.-..+++.+. ....++|.|.|.|.+|+..++.+.. .+.+-|.|.+.
T Consensus 92 tG~p~ai~d~~~lT~~RTaa~sala~~~La-----~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R-------- 158 (314)
T PRK06141 92 TGEPLALVDGTELTARRTAAASALAASYLA-----RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR-------- 158 (314)
T ss_pred CCCEEEEEcCcchhcchhHHHHHHHHHHhC-----CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC--------
Confidence 5555542 2333222334433334444432 2357899999999999999987765 56555677765
Q ss_pred CCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CCccccccceEecCCCcC--ccchhhHHHhhhcCceEEEeCCCC
Q 006671 457 GFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 457 GLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~eil~~~cDIliPcA~~n--~It~enA~~l~~~~akiVvEgAN~ 533 (636)
+.++...+.+.....+ ......+. ++.. .+|||++=|.... .++.+ . ++.++.+.+=|++.
T Consensus 159 --s~~~a~~~a~~~~~~g---------~~~~~~~~~~~av-~~aDIVi~aT~s~~pvl~~~---~-l~~g~~i~~ig~~~ 222 (314)
T PRK06141 159 --DPAKAEALAAELRAQG---------FDAEVVTDLEAAV-RQADIISCATLSTEPLVRGE---W-LKPGTHLDLVGNFT 222 (314)
T ss_pred --CHHHHHHHHHHHHhcC---------CceEEeCCHHHHH-hcCCEEEEeeCCCCCEecHH---H-cCCCCEEEeeCCCC
Confidence 2333322322111111 01222211 1122 4899997665533 23332 2 34588898999999
Q ss_pred CCCHHHHHHHHHCCceEecc
Q 006671 534 PCTPEAVDVLKKANVLIAPA 553 (636)
Q Consensus 534 P~T~eA~~iL~~rGIlviPD 553 (636)
|...|....+.+++..|+=|
T Consensus 223 ~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 223 PDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred cccccCCHHHHhcCcEEEcC
Confidence 99999887777787766643
No 137
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.31 E-value=0.38 Score=50.73 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=66.7
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccc-
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN- 496 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~- 496 (636)
+|.|.|+|++|..+|+.|.+.|..|+ +.|. +.+.+..+. +. + ...+ + +.+++.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr----------~~~~~~~l~---~~-g-~~~~----~-----s~~~~~~~ 56 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCV-GYDH----------DQDAVKAMK---ED-R-TTGV----A-----NLRELSQR 56 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHH---Hc-C-Cccc----C-----CHHHHHhh
Confidence 79999999999999999999999864 4554 333332222 11 1 1000 0 1111111
Q ss_pred -cccceEecCCCcCccchhhHHHhh---hcCceEEEeCCCCC--CCHHHHHHHHHCCceEec
Q 006671 497 -ERCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSNMP--CTPEAVDVLKKANVLIAP 552 (636)
Q Consensus 497 -~~cDIliPcA~~n~It~enA~~l~---~~~akiVvEgAN~P--~T~eA~~iL~~rGIlviP 552 (636)
..+|+++-|.... ...+-.+.|. +.+ ++|+...|.. .|.+..+.++++|+.|+-
T Consensus 57 ~~~~dvIi~~vp~~-~~~~v~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 57 LSAPRVVWVMVPHG-IVDAVLEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred cCCCCEEEEEcCch-HHHHHHHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 2579998877655 3333333432 223 6788888863 677777889999998764
No 138
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.29 E-value=0.41 Score=49.29 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+.++|+|.|.|-||.++++.|...|..=+.+.|.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 57889999999999999999999999866777774
No 139
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=93.26 E-value=0.24 Score=53.71 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=59.9
Q ss_pred EEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCC---------cee
Q 006671 419 CVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYAR---------SKY 488 (636)
Q Consensus 419 VaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~---------a~~ 488 (636)
|+|.|||.+|+..++.+.+ .+.++|+|+|. +|+ ....+.+.. + ...|. .++. ...
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~-----~~~-----~~a~lA~~l---g-yds~~-~~~~~~~~~~~~~l~v 65 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT-----SPD-----FEAYRAKEL---G-IPVYA-ASEEFIPRFEEAGIEV 65 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC-----ChH-----HHHHHHHHh---C-CCEEe-ecCCcceEeccCceEe
Confidence 5799999999999998765 57899999995 332 211122211 1 11111 1111 111
Q ss_pred e-CCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 489 Y-DEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 489 i-~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
. +.++++ .+||++++|+ ....+..++..+.+.|+|.|.-||
T Consensus 66 ~g~~eeLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 66 AGTLEDLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred cCCHHHHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEECC
Confidence 1 112344 4799999996 666778888888877877777665
No 140
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.26 E-value=0.53 Score=53.88 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
...|.+|+|.|.|.+|..++..+..+|++ |.+.|.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~D~ 196 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAFDT 196 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 35689999999999999999999999997 667775
No 141
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.15 E-value=0.3 Score=52.00 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=44.0
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfG-NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+.. |++.+.+++||+|+|.|-| .||.-+|.+|.+.||. |+++++
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAt-Vtv~hs 189 (285)
T PRK14191 137 VPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGAS-VSVCHI 189 (285)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCE-EEEEeC
Confidence 46898887654 5566889999999999987 8999999999999999 567765
No 142
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=93.10 E-value=0.37 Score=52.20 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=64.9
Q ss_pred CcEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCc
Q 006671 416 GLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (636)
Q Consensus 416 GkrVaIqGfGNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (636)
..||+|.|+||+|+..++.+.+. +..+|+|.|.+ + .+++ +. .+..| .......
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-----~----~~~~------~~---~~~v~--------~~~d~~e 56 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-----G----AETL------DT---ETPVY--------AVADDEK 56 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-----c----HHHH------hh---cCCcc--------ccCCHHH
Confidence 36999999999999999998765 89999999984 1 1111 00 11111 0111122
Q ss_pred cccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHH
Q 006671 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL 543 (636)
Q Consensus 495 l~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL 543 (636)
+..++|+++-|+ .+..+.+.+..+++.+..+|.+--.-..-|+..+.|
T Consensus 57 ~l~~iDVViIct-Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~l 104 (324)
T TIGR01921 57 HLDDVDVLILCM-GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVM 104 (324)
T ss_pred hccCCCEEEEcC-CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHH
Confidence 336799999995 556678888888888889998842111234554444
No 143
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.07 E-value=0.4 Score=51.35 Aligned_cols=94 Identities=26% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHC----CCEEEEEeCCCCceeCCCCCCHHHHHHH
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDEDGFDYMKISFL 466 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~----GAkVVaVSDs~G~IydpdGLDve~L~~L 466 (636)
..+|..|++.. |++.+.+++||+|+|.| +..||.-+|.+|.++ +|. |+++.++- + |+
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aT-Vtvchs~T----~---~l------ 198 (297)
T PRK14167 137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNAT-VTVCHSRT----D---DL------ 198 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCE-EEEeCCCC----C---CH------
Confidence 36898887654 55668899999999999 678999999999988 787 67777621 0 11
Q ss_pred HHHHhhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCCC
Q 006671 467 RDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 467 ~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
.++ ...+||+|-|+. .+.|+.+.. +.++-+|=-|-|-
T Consensus 199 ----------~~~----------------~~~ADIvIsAvGkp~~i~~~~i----k~gaiVIDvGin~ 236 (297)
T PRK14167 199 ----------AAK----------------TRRADIVVAAAGVPELIDGSML----SEGATVIDVGINR 236 (297)
T ss_pred ----------HHH----------------HhhCCEEEEccCCcCccCHHHc----CCCCEEEEccccc
Confidence 111 236799988775 567776643 3477666556553
No 144
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=93.06 E-value=0.35 Score=54.64 Aligned_cols=120 Identities=15% Similarity=0.076 Sum_probs=71.1
Q ss_pred EEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC-CccccccccCCceeeCCCCccc-
Q 006671 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-SLRDYSKTYARSKYYDEAKPWN- 496 (636)
Q Consensus 419 VaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g-~l~~y~~~~p~a~~i~~~eil~- 496 (636)
|.|.|+|++|..+|+.|.+.|.+| .+-|. +.++.+.+.+.. ..+ .+.. +. +..++..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V-~v~dr----------t~~~~~~l~~~~-~~g~~~~~-------~~--s~~e~v~~ 60 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTV-SVYNR----------TPEKTDEFLAEH-AKGKKIVG-------AY--SIEEFVQS 60 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeE-EEEeC----------CHHHHHHHHhhc-cCCCCcee-------cC--CHHHHHhh
Confidence 679999999999999999999984 45554 233333232110 001 0111 00 1112221
Q ss_pred -cccceEecCCCcCccchhhHHHhhh--cCceEEEeCCCC-C-CCHHHHHHHHHCCceEecccccccccc
Q 006671 497 -ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIAPAMAAGAGGV 561 (636)
Q Consensus 497 -~~cDIliPcA~~n~It~enA~~l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGIlviPD~~aNAGGV 561 (636)
.+||+++-|...+....+....|.. ..=++|+.+.|. | .|.+..+.|.++||.|+- .--+||+
T Consensus 61 l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd--apVsGG~ 128 (467)
T TIGR00873 61 LERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG--SGVSGGE 128 (467)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc--CCCCCCH
Confidence 2589888777665544444444432 134789999994 4 556666789999999883 3344555
No 145
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.04 E-value=0.38 Score=50.35 Aligned_cols=118 Identities=18% Similarity=0.305 Sum_probs=75.5
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhc----CCccccccccCCceeeCCCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ----RSLRDYSKTYARSKYYDEAK 493 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~----g~l~~y~~~~p~a~~i~~~e 493 (636)
++-++|+|.+|..+++.|...|..||+- |. |.++++ +++... .++.++...++ ++..
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~y-D~----------n~~av~---~~~~~ga~~a~sl~el~~~L~-----~pr~ 62 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGY-DV----------NQTAVE---ELKDEGATGAASLDELVAKLS-----APRI 62 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEE-cC----------CHHHHH---HHHhcCCccccCHHHHHHhcC-----CCcE
Confidence 4568999999999999999999998753 32 333322 222221 12333322221 1222
Q ss_pred ccccccceEecCC-CcCccchhhHHHhhhcCceEEEeCCCCCC--CHHHHHHHHHCCceEeccccccccccee
Q 006671 494 PWNERCDVAFPCA-SQNEIDQSDAINLVNSGCRILVEGSNMPC--TPEAVDVLKKANVLIAPAMAAGAGGVVA 563 (636)
Q Consensus 494 il~~~cDIliPcA-~~n~It~enA~~l~~~~akiVvEgAN~P~--T~eA~~iL~~rGIlviPD~~aNAGGViv 563 (636)
+| +.+|++ +.+.+-.+-++.| +.-.+|++|.|.-. |..-.+.|+++||.++ =+--+||+.-
T Consensus 63 vW-----lMvPag~it~~vi~~la~~L--~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl--D~GTSGG~~G 126 (300)
T COG1023 63 VW-----LMVPAGDITDAVIDDLAPLL--SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL--DVGTSGGVWG 126 (300)
T ss_pred EE-----EEccCCCchHHHHHHHHhhc--CCCCEEEECCccchHHHHHHHHHHHhcCCeEE--eccCCCCchh
Confidence 33 678888 5555555556665 35678999999764 4444568999999998 5678888853
No 146
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.00 E-value=2.1 Score=47.31 Aligned_cols=128 Identities=12% Similarity=0.187 Sum_probs=69.4
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhh--cCCccccccccCCceee-CCC-C
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ--QRSLRDYSKTYARSKYY-DEA-K 493 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~--~g~l~~y~~~~p~a~~i-~~~-e 493 (636)
+|+|.|.|.||..+|..|. .|..|+ +.|. |.++++.+.+-... ...+.+.... ...... +.+ .
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~----------d~~kv~~l~~g~~~~~e~~l~~~l~~-~~~~l~~t~~~~ 68 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVV-ALDI----------LPSRVAMLNDRISPIVDKEIQQFLQS-DKIHFNATLDKN 68 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEE-EEEC----------CHHHHHHHHcCCCCCCCcCHHHHHHh-CCCcEEEecchh
Confidence 6999999999999997666 588854 5564 33333222210000 0001110000 011111 111 1
Q ss_pred ccccccceEecCCCcCc------cchhhH----HHhh--hcCceEEEeCCCCC-CCHHHHHHHHHCCceEeccccccc
Q 006671 494 PWNERCDVAFPCASQNE------IDQSDA----INLV--NSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAAGA 558 (636)
Q Consensus 494 il~~~cDIliPcA~~n~------It~enA----~~l~--~~~akiVvEgAN~P-~T~eA~~iL~~rGIlviPD~~aNA 558 (636)
-...+||++|-|-.+.. .+-..+ ..|. ..+.-+|.+..=.| +|.+..+.+.++|+.+.|.++...
T Consensus 69 ~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G 146 (388)
T PRK15057 69 EAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREG 146 (388)
T ss_pred hhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCC
Confidence 12358999999877652 111111 1121 33566777776666 566667778889999999988654
No 147
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=92.96 E-value=0.45 Score=53.47 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=70.4
Q ss_pred cEEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccc-------ccCC-
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR- 485 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~---GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~-------~~p~- 485 (636)
.||+|=|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-...|++..-++ .+.+
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~---------~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk 146 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGK 146 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC---------CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCE
Confidence 6899999999999999987753 5799999875 255566556555444454432111 0111
Q ss_pred -ceeeCC----CCcc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 486 -SKYYDE----AKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 486 -a~~i~~----~eil-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
.+..+. +-.| +..+||++.|+. ...+.+.|...++.|||.|.=.|
T Consensus 147 ~I~V~~~~dp~~l~W~~~gVDiViE~TG-~f~s~e~a~~hl~aGAkkV~iSA 197 (442)
T PLN02237 147 PIKVVSNRDPLKLPWAELGIDIVIEGTG-VFVDGPGAGKHIQAGAKKVIITA 197 (442)
T ss_pred EEEEEEcCCchhCChhhcCCCEEEEccC-hhhhHHHHHHHHhCCCEEEEECC
Confidence 111221 2246 478999999985 45788888888888999887765
No 148
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=92.95 E-value=0.38 Score=50.77 Aligned_cols=130 Identities=17% Similarity=0.115 Sum_probs=77.1
Q ss_pred cEEEEecCccHHHHHHHHHHHC---CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC-CC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~---GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~-~~ 492 (636)
.||.|.|+|++|+.+++.|... +..+++|.|+. + ++...+ .. ....++ -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~-----~-----~~~~~~----------~~------~~~~~~~l~ 56 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA-----A-----DLPPAL----------AG------RVALLDGLP 56 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC-----H-----HHHHHh----------hc------cCcccCCHH
Confidence 6899999999999999998653 37888888872 1 111101 00 011222 24
Q ss_pred CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHH----HHCC-ceEecc-------ccc--cc
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKAN-VLIAPA-------MAA--GA 558 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL----~~rG-IlviPD-------~~a--NA 558 (636)
+++..++|+++.||....+- +-+..+++.++.+|+-.-=--..++-.+.| ++.| -+|+|. .+. ..
T Consensus 57 ~ll~~~~DlVVE~A~~~av~-e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l~aa~~ 135 (267)
T PRK13301 57 GLLAWRPDLVVEAAGQQAIA-EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQAVAG 135 (267)
T ss_pred HHhhcCCCEEEECCCHHHHH-HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHHHHhhc
Confidence 45567899999999877664 456677777888887542222333333333 3333 566763 222 23
Q ss_pred ccceeecchhccccC
Q 006671 559 GGVVAGELELNQECN 573 (636)
Q Consensus 559 GGVivS~~E~~qN~~ 573 (636)
||....-+...++..
T Consensus 136 ~~~~~v~~~t~K~P~ 150 (267)
T PRK13301 136 RDDAEVVYESRKPVA 150 (267)
T ss_pred cCceEEEEEEecChh
Confidence 555554455555544
No 149
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.95 E-value=0.36 Score=50.35 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=60.2
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CCccc
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKPWN 496 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~eil~ 496 (636)
+|.|.|+|++|..+|..|.+.|..|+ +.|. + .+++..+. . .+ ....+. .+. -
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr-------~---~~~~~~~~---~-~g-----------~~~~~~~~~~-~ 53 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTI-------G---PEVADELL---A-AG-----------AVTAETARQV-T 53 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcC-------C---HHHHHHHH---H-CC-----------CcccCCHHHH-H
Confidence 48899999999999999999999854 4454 2 23332221 1 11 111111 111 2
Q ss_pred cccceEecCCCcCccchhhH---HHhhh--cCceEEEeCCCCC-C-CHHHHHHHHHCCceEec
Q 006671 497 ERCDVAFPCASQNEIDQSDA---INLVN--SGCRILVEGSNMP-C-TPEAVDVLKKANVLIAP 552 (636)
Q Consensus 497 ~~cDIliPcA~~n~It~enA---~~l~~--~~akiVvEgAN~P-~-T~eA~~iL~~rGIlviP 552 (636)
.+||++|-|........... ..+.. ..-++|+.-++.+ . +.+..+.+.++|+.++-
T Consensus 54 ~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 54 EQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred hcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 47999999877542222111 11111 1235666655533 2 23455778888987664
No 150
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.78 E-value=0.43 Score=52.07 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=66.9
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHH
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k 470 (636)
...|..||+..+ ++.+.+++||+|+|+| +..||.-+|.+|.+.||. |+++.+.- + |
T Consensus 194 ~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~AT-VTicHs~T----~---n----------- 250 (345)
T PLN02897 194 VSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDAT-VSTVHAFT----K---D----------- 250 (345)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCE-EEEEcCCC----C---C-----------
Confidence 468998887655 5678999999999999 677999999999999998 57777621 1 1
Q ss_pred hhcCCccccccccCCceeeCCCCccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCC
Q 006671 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN 532 (636)
+.++ ...+||+|-|+. .+.|+.+.. +.||-+|==|-|
T Consensus 251 -----l~~~----------------~~~ADIvIsAvGkp~~v~~d~v----k~GavVIDVGin 288 (345)
T PLN02897 251 -----PEQI----------------TRKADIVIAAAGIPNLVRGSWL----KPGAVVIDVGTT 288 (345)
T ss_pred -----HHHH----------------HhhCCEEEEccCCcCccCHHHc----CCCCEEEEcccc
Confidence 1111 236799998876 466676643 447776655656
No 151
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.69 E-value=0.15 Score=50.16 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=46.0
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCH--HHHHHHHHHHhhcCCccc--cccccCCceeeCCCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDY--MKISFLRDIKSQQRSLRD--YSKTYARSKYYDEAK 493 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDv--e~L~~L~~~k~~~g~l~~--y~~~~p~a~~i~~~e 493 (636)
+|+|.|.|.+|...|..+...|.. |.+.|. |++.++. +.+.........++.+.. .........+.++-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~-----~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDR-----SPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLE 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-S-----SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEEC-----ChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHH
Confidence 689999999999999999999999 567776 4444322 111111111112233221 000011223333323
Q ss_pred ccccccceEecCCCcCcc
Q 006671 494 PWNERCDVAFPCASQNEI 511 (636)
Q Consensus 494 il~~~cDIliPcA~~n~I 511 (636)
-+. +||+.|.|..++.=
T Consensus 75 ~~~-~adlViEai~E~l~ 91 (180)
T PF02737_consen 75 EAV-DADLVIEAIPEDLE 91 (180)
T ss_dssp GGC-TESEEEE-S-SSHH
T ss_pred HHh-hhheehhhccccHH
Confidence 333 99999999988653
No 152
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.63 E-value=0.16 Score=49.14 Aligned_cols=34 Identities=32% Similarity=0.328 Sum_probs=31.4
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaV 445 (636)
.+|+|++|+|.|-|+||..-++.|.+.|+.|+-|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4789999999999999999999999999997655
No 153
>PLN00203 glutamyl-tRNA reductase
Probab=92.60 E-value=0.88 Score=52.23 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=72.4
Q ss_pred hHHHHHH-HHHHHHhCC-CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC
Q 006671 397 YGLVFFA-QLILADMNK-ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (636)
Q Consensus 397 ~GV~~~~-~~~l~~~g~-~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g 474 (636)
..|.+++ +.+.+.++. ++.+++|.|.|.|.+|..+++.|...|++-|.|.+.+ .+.+..+. ...+
T Consensus 245 vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~era~~La---~~~~ 311 (519)
T PLN00203 245 VSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------EERVAALR---EEFP 311 (519)
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------HHHHHHHH---HHhC
Confidence 3444433 434444553 6999999999999999999999999998656776652 22322222 1111
Q ss_pred CccccccccCCceeeCCCCcc--ccccceEecCC--CcCccchhhHHHhhhc-----CceEEEeCCCCC-CCHH
Q 006671 475 SLRDYSKTYARSKYYDEAKPW--NERCDVAFPCA--SQNEIDQSDAINLVNS-----GCRILVEGSNMP-CTPE 538 (636)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil--~~~cDIliPcA--~~n~It~enA~~l~~~-----~akiVvEgAN~P-~T~e 538 (636)
.. ...+.+-+++. -.++||+|-|. ....|+.+....+... +-.+|+.-|.-. +.|+
T Consensus 312 g~--------~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~ 377 (519)
T PLN00203 312 DV--------EIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGAC 377 (519)
T ss_pred CC--------ceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccc
Confidence 00 01111112221 24789999875 4567888887776432 235888887643 4443
No 154
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.58 E-value=0.18 Score=54.75 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=64.4
Q ss_pred hCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee
Q 006671 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (636)
Q Consensus 410 ~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i 489 (636)
+|.++.|||+.|.|+|.+|+.+|..+...|.++|+- || +.+.++ . ..| |.+.+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~--------dp--i~~~~~--~----------~a~-----gvq~v 192 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGY--------DP--ITPMAL--A----------EAF-----GVQLV 192 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEee--------cC--CCchHH--H----------Hhc-----cceee
Confidence 467899999999999999999999999999998753 32 222221 0 111 44555
Q ss_pred CCCCccccccceE---ecC--CCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHH
Q 006671 490 DEAKPWNERCDVA---FPC--ASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEA 539 (636)
Q Consensus 490 ~~~eil~~~cDIl---iPc--A~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA 539 (636)
+-+++|. .||.+ +|. ++++.|+.+.-... +-|+++|= .|-+. +...|
T Consensus 193 sl~Eil~-~ADFitlH~PLtP~T~~lin~~tfA~m-KkGVriIN-~aRGGvVDe~A 245 (406)
T KOG0068|consen 193 SLEEILP-KADFITLHVPLTPSTEKLLNDETFAKM-KKGVRIIN-VARGGVVDEPA 245 (406)
T ss_pred eHHHHHh-hcCEEEEccCCCcchhhccCHHHHHHh-hCCcEEEE-ecCCceechHH
Confidence 5556664 44544 343 45788888776555 45788873 33333 44444
No 155
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.52 E-value=0.37 Score=50.76 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=61.7
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-CCCCccc
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPWN 496 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i-~~~eil~ 496 (636)
+|.|.|.|++|...|+.|.+.|.+| .+.|. +.+++..+. +. + +... +..+ .-
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V-~v~d~----------~~~~~~~~~---~~-g-----------~~~~~s~~~-~~ 55 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQL-QVFDV----------NPQAVDALV---DK-G-----------ATPAASPAQ-AA 55 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeE-EEEcC----------CHHHHHHHH---Hc-C-----------CcccCCHHH-HH
Confidence 7999999999999999999999885 45554 223322121 11 1 1111 1111 22
Q ss_pred cccceEecCCCcCccchhhH---HHhhh--cCceEEEeCCCC-C-CCHHHHHHHHHCCceEe
Q 006671 497 ERCDVAFPCASQNEIDQSDA---INLVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIA 551 (636)
Q Consensus 497 ~~cDIliPcA~~n~It~enA---~~l~~--~~akiVvEgAN~-P-~T~eA~~iL~~rGIlvi 551 (636)
.+||++|-|-.......+-. ..+.. ..-++|+.-+.. | .+.+..+.+.++|+.|+
T Consensus 56 ~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 56 AGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred hcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 47899998876553221111 11111 123456655554 4 45566788899998876
No 156
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.50 E-value=1.3 Score=50.73 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=42.9
Q ss_pred cchhHHHHHHHHHHHH------hCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 394 ATGYGLVFFAQLILAD------MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 394 ATG~GV~~~~~~~l~~------~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
--++|.+.+++..+.. .+.++++++++|.|.|.+|+.++..|.+.|++ |.|.+.
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~-V~i~nR 410 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGAR-VVIANR 410 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEcC
Confidence 3478888888754422 24578999999999999999999999999997 456665
No 157
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.47 E-value=1.4 Score=48.95 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=27.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|.||..+|..|.+.|..|++ .|.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE-EeC
Confidence 6899999999999999999999999654 454
No 158
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.44 E-value=2.8 Score=44.47 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 396 G~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+|.+.+++ ..+.+++|++++|.|.|-.++.++-.|...|++-|.|.+.
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 667666665 4567889999999999999999999899999877888887
No 159
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.43 E-value=0.74 Score=49.28 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=42.9
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHC----CCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~----GAkVVaVSDs 448 (636)
..+|..||+.. |++.+.+++||+|+|.| +..||.-++.+|.+. +|. |+++.+
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aT-Vtvchs 193 (293)
T PRK14185 137 VSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCT-VTVCHS 193 (293)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCE-EEEecC
Confidence 46898887655 45668899999999999 678999999999988 577 677776
No 160
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.42 E-value=0.77 Score=49.79 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=62.3
Q ss_pred cEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHh--hcCCccccccccC--CceeeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS--QQRSLRDYSKTYA--RSKYYDE 491 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~--~~g~l~~y~~~~p--~a~~i~~ 491 (636)
.||+|.|+|.+|+.+++.+.+ .+..+++|+|++ + + ....+...+. ..+.+......+. +......
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~-----~---~--~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~ 71 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK-----P---D--YEARVAVEKGYPLYVADPEREKAFEEAGIPVAGT 71 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC-----h---H--HHHHHHHhcCCCccccCccccccccCCceEEcCC
Confidence 489999999999999998875 578999999962 2 1 1111111100 0000000000011 1111111
Q ss_pred -CCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 492 -AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 492 -~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
++++ .++|+++-|+ ....+.+++....+.|+++|.-|.
T Consensus 72 ~~el~-~~vDVVIdaT-~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 72 IEDLL-EKADIVVDAT-PGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred hhHhh-ccCCEEEECC-CchhhHHHHHHHHHCCCEEEEcCC
Confidence 2233 4799999997 556788899888888999998765
No 161
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.36 E-value=0.59 Score=49.85 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=43.1
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHC----CCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~----GAkVVaVSDs 448 (636)
...|..||+.. |++.+.+++||+|+|.| +..||.-++.+|.+. +|. |+++.+
T Consensus 133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~At-Vtvchs 189 (287)
T PRK14181 133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNAT-VTLLHS 189 (287)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCE-EEEeCC
Confidence 36898888655 45668999999999999 678999999999998 787 677776
No 162
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.35 E-value=0.17 Score=50.78 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.3
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++|++|+|.|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 36899999999999999999999999999976554
No 163
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.34 E-value=0.17 Score=54.73 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=66.5
Q ss_pred EEEecCccHHHHHHHHHHHCCCE-EEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC--C-CCc
Q 006671 419 CVVSGSGKIAMHVLEKLIAYGAI-PVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD--E-AKP 494 (636)
Q Consensus 419 VaIqGfGNVG~~aAe~L~e~GAk-VVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~--~-~ei 494 (636)
|.|.|.|.||+.+++.|.+.+-. =|.|+|. +.+++..+.+.. ....+.. ..++ + +++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------~~~~~~~~~~~~-~~~~~~~--------~~~d~~~~~~l 61 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------NPEKAERLAEKL-LGDRVEA--------VQVDVNDPESL 61 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------SHHHHHHHHT---TTTTEEE--------EE--TTTHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------CHHHHHHHHhhc-cccceeE--------EEEecCCHHHH
Confidence 67899999999999999998753 4788886 444443232100 1111111 1111 1 112
Q ss_pred --cccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCH---HHHHHHHHCCceEecccccccc
Q 006671 495 --WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTP---EAVDVLKKANVLIAPAMAAGAG 559 (636)
Q Consensus 495 --l~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~---eA~~iL~~rGIlviPD~~aNAG 559 (636)
+-.+|||+|-|+... .+..-+..-++.|+.+|= -+. .+. +-++..+++|+.++++.=.+.|
T Consensus 62 ~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 62 AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 224899999999766 566666666788999986 111 122 2245667899999987655554
No 164
>PRK08223 hypothetical protein; Validated
Probab=92.27 E-value=0.81 Score=48.84 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|+..+|+|+|.|-+|..+|+.|...|..=+.+.|.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 467889999999999999999999999877888775
No 165
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.21 E-value=0.43 Score=41.16 Aligned_cols=89 Identities=13% Similarity=0.213 Sum_probs=51.9
Q ss_pred EEEEecCccHHHHHHHHHHHCC---CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee--CCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYG---AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--DEA 492 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~G---AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i--~~~ 492 (636)
||.|.|+||+|..+++.|.+.| .+|.-+++. +.+++. +++++ ++ .... +..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------~~~~~~---~~~~~----------~~-~~~~~~~~~ 56 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------SPEKAA---ELAKE----------YG-VQATADDNE 56 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------SHHHHH---HHHHH----------CT-TEEESEEHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------cHHHHH---HHHHh----------hc-cccccCChH
Confidence 6889999999999999999999 887656565 233332 22222 11 1212 223
Q ss_pred CccccccceEecCCCcCccchhhHHHh-hhcCceEEEeCCC
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINL-VNSGCRILVEGSN 532 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l-~~~~akiVvEgAN 532 (636)
++.. ++||+|-|-....+.+- +..+ ....-++|+--+|
T Consensus 57 ~~~~-~advvilav~p~~~~~v-~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 57 EAAQ-EADVVILAVKPQQLPEV-LSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHH-HTSEEEE-S-GGGHHHH-HHHHHHHHTTSEEEEEST
T ss_pred Hhhc-cCCEEEEEECHHHHHHH-HHHHhhccCCCEEEEeCC
Confidence 3344 89999999877665432 2222 1125556655444
No 166
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.18 E-value=0.43 Score=50.79 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=43.7
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+.. |++.+.+++||+|+|.|- |.||.-+|..|.+.|+.| +++.+
T Consensus 138 ~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatV-tv~~s 190 (284)
T PRK14179 138 IPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATV-TLTHS 190 (284)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEE-EEECC
Confidence 47899888654 456789999999999997 999999999999999985 55544
No 167
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=92.17 E-value=0.72 Score=52.63 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=69.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~ 496 (636)
.+|.+.|.|++|...|+.|.+.|.+ |+|-|. +.++.+.+.+.....|. ..+ ..+ -+.+++.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NR----------t~~k~~~l~~~~~~~Ga-~~~----~~a--~s~~e~v~ 68 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNR----------TTSKVDETVERAKKEGN-LPL----YGF--KDPEDFVL 68 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECC----------CHHHHHHHHHhhhhcCC-ccc----ccC--CCHHHHHh
Confidence 3699999999999999999999998 566665 23333323221111010 000 000 01112221
Q ss_pred c--ccceEecCCCcCccchhhHHHhhh--cCceEEEeCCCCC--CCHHHHHHHHHCCceEe
Q 006671 497 E--RCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNMP--CTPEAVDVLKKANVLIA 551 (636)
Q Consensus 497 ~--~cDIliPcA~~n~It~enA~~l~~--~~akiVvEgAN~P--~T~eA~~iL~~rGIlvi 551 (636)
. .||++|-|-.......+-...|+. ..=++|+++.|.. .|.+..+.++++|+.|+
T Consensus 69 ~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 69 SIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1 488888776544433333222322 1346899999964 66777788999999987
No 168
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=92.10 E-value=0.22 Score=53.32 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.++.|+||.|.|+|++|+.+|+.|...|.+|+++.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~ 166 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS 166 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999999999999987664
No 169
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.09 E-value=0.73 Score=48.60 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=64.3
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-CCCCccc
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPWN 496 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i-~~~eil~ 496 (636)
+|.|+|+|++|+..|+.|.+.|..|+ +.|. +.+++..+ ++ .+ +... +.+++..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr----------~~~~~~~~---~~-~g-----------~~~~~s~~~~~~ 55 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYDV----------NQEAVDVA---GK-LG-----------ITARHSLEELVS 55 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEEC----------CHHHHHHH---HH-CC-----------CeecCCHHHHHH
Confidence 68999999999999999999999864 5665 22332222 11 11 1111 1122222
Q ss_pred -c-ccceEecCCCcCccchhhHHHhhh--cCceEEEeCCC-CC-CCHHHHHHHHHCCceEe
Q 006671 497 -E-RCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSN-MP-CTPEAVDVLKKANVLIA 551 (636)
Q Consensus 497 -~-~cDIliPcA~~n~It~enA~~l~~--~~akiVvEgAN-~P-~T~eA~~iL~~rGIlvi 551 (636)
. .+|+++-|-.......+-...+.. ..=++|+.-++ .| .+.+..+.+.++|+.|+
T Consensus 56 ~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 56 KLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred hCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 1 278888877655333333333321 12247777766 45 45566678889999886
No 170
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=92.09 E-value=0.18 Score=54.16 Aligned_cols=115 Identities=27% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHH
Q 006671 387 GSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (636)
Q Consensus 387 Gs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~ 465 (636)
|++|-+..|+| ++ |.+.|..-.|.||+|++ .|.||+-+.++..-+|++||+++-+ .++.+.
T Consensus 129 gvLGmpG~TAY---~g----Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg-----------~eK~~~ 190 (340)
T COG2130 129 GVLGMPGLTAY---FG----LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG-----------AEKCDF 190 (340)
T ss_pred hhcCCchHHHH---HH----HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC-----------HHHHHH
Confidence 55665555554 33 34567777899999999 6999999888888899999999986 123221
Q ss_pred HHHHHhhcC--CccccccccCCceeeCCCCccc----cccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 466 LRDIKSQQR--SLRDYSKTYARSKYYDEAKPWN----ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 466 L~~~k~~~g--~l~~y~~~~p~a~~i~~~eil~----~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
+ +++-| ..-+| ... +-.+.|. --.||++.|-.+++.+. +-.+++.+|++++.|+
T Consensus 191 l---~~~lGfD~~idy----k~~---d~~~~L~~a~P~GIDvyfeNVGg~v~DA--v~~~ln~~aRi~~CG~ 250 (340)
T COG2130 191 L---TEELGFDAGIDY----KAE---DFAQALKEACPKGIDVYFENVGGEVLDA--VLPLLNLFARIPVCGA 250 (340)
T ss_pred H---HHhcCCceeeec----Ccc---cHHHHHHHHCCCCeEEEEEcCCchHHHH--HHHhhccccceeeeee
Confidence 2 12111 11112 000 0001111 24699999987776644 2233466899999998
No 171
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.05 E-value=1.9 Score=46.26 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCcEEEEecCccHHHHHHHHHH-HCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-C
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~-e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~ 492 (636)
..+++.|.|.|..|++.++.+. ..+.+-|.|.|. + .++...+.+.......+ ....+++ +
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r-----~-----~~~a~~~~~~~~~~~~~--------~~~~~~~~~ 187 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR-----T-----FEKAYAFAQEIQSKFNT--------EIYVVNSAD 187 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC-----C-----HHHHHHHHHHHHHhcCC--------cEEEeCCHH
Confidence 5689999999999998887775 468888888887 2 23332222211111000 1111222 2
Q ss_pred CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHH-HHHHHCCceEe
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAV-DVLKKANVLIA 551 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~-~iL~~rGIlvi 551 (636)
+.. .++||++=|.... +..-. .-++.++.+++=|++.|--.|.. +++.....+|+
T Consensus 188 ~~~-~~aDiVi~aT~s~--~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvv 243 (325)
T PRK08618 188 EAI-EEADIIVTVTNAK--TPVFS-EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVV 243 (325)
T ss_pred HHH-hcCCEEEEccCCC--CcchH-HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEE
Confidence 222 4899999777643 22212 23466999999999999666654 34444443343
No 172
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=92.04 E-value=3.6 Score=43.84 Aligned_cols=133 Identities=15% Similarity=0.098 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCC
Q 006671 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (636)
Q Consensus 396 G~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~ 475 (636)
|+|++..+++.. .+.+.+|++|+|.|.|-.++.++..|.+.|++=|.|.+. +.++...|.+.....+.
T Consensus 108 ~~G~~~~L~~~~--~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------t~~ra~~La~~~~~~~~ 175 (283)
T COG0169 108 GIGFLRALKEFG--LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------TRERAEELADLFGELGA 175 (283)
T ss_pred HHHHHHHHHhcC--CCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------CHHHHHHHHHHhhhccc
Confidence 566655554321 125678999999999999999999999999865677776 34444334333222211
Q ss_pred ccccccccCCceeeCCCCcccc-ccceEecCCCcCccchh-----hHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCce
Q 006671 476 LRDYSKTYARSKYYDEAKPWNE-RCDVAFPCASQNEIDQS-----DAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVL 549 (636)
Q Consensus 476 l~~y~~~~p~a~~i~~~eil~~-~cDIliPcA~~n~It~e-----nA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIl 549 (636)
........++-.. ++||+|-|..-+.-..+ ++..| .+..+|.+---+|..-.-.+.-+++|..
T Consensus 176 ---------~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l--~~~~~v~D~vY~P~~TplL~~A~~~G~~ 244 (283)
T COG0169 176 ---------AVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELL--PKGAIVYDVVYNPLETPLLREARAQGAK 244 (283)
T ss_pred ---------ccccccccccccccccCEEEECCCCCCCCCCCCCCCcHHhc--CcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence 0011111111122 69999988864333221 12223 3678888998888433344555677765
Q ss_pred Ee
Q 006671 550 IA 551 (636)
Q Consensus 550 vi 551 (636)
++
T Consensus 245 ~i 246 (283)
T COG0169 245 TI 246 (283)
T ss_pred EE
Confidence 43
No 173
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.86 E-value=0.41 Score=50.99 Aligned_cols=52 Identities=25% Similarity=0.322 Sum_probs=43.5
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+. +|++.+.+++||+|+|.| +..||.-+|.+|.+.||. |+++++
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~at-Vt~chs 190 (284)
T PRK14190 138 LPCTPHGILE----LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENAT-VTYCHS 190 (284)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEeC
Confidence 3588888764 556678999999999999 788999999999999998 566765
No 174
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.84 E-value=0.21 Score=50.28 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=30.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|++|+|+|.|.||..-++.|.+.|++|+-||
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 6899999999999999999999999999965444
No 175
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.83 E-value=0.22 Score=55.19 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+.+|.|+||.|.|+|++|+.+|+.+...|.+|++..
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d 181 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD 181 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 346899999999999999999999999999987653
No 176
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.72 E-value=0.7 Score=47.75 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
.|+.++|.|.|.|.+|..+++.|...|..=+.+.|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678999999999999999999999998767888753
No 177
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.70 E-value=0.77 Score=38.66 Aligned_cols=48 Identities=31% Similarity=0.470 Sum_probs=38.0
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHH
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRD 468 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~ 468 (636)
+|+|+|.|.+|.-+|..|.+.|.+ |.+.+.+..+. ..+|.+....+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~-vtli~~~~~~~--~~~~~~~~~~~~~ 48 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE-VTLIERSDRLL--PGFDPDAAKILEE 48 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-EEEEESSSSSS--TTSSHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE-EEEEeccchhh--hhcCHHHHHHHHH
Confidence 689999999999999999999999 57777777666 5677665444433
No 178
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.70 E-value=0.91 Score=46.35 Aligned_cols=113 Identities=19% Similarity=0.354 Sum_probs=64.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee--C--CC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--D--EA 492 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i--~--~~ 492 (636)
++++|.|.|.||+.+|+.|.+.|..|+.|-+ |.+.+ .+..... + ....+ + ..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~-----------d~~~~---~~~~~~~--~--------~~~~v~gd~t~~ 56 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDR-----------DEERV---EEFLADE--L--------DTHVVIGDATDE 56 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEc-----------CHHHH---HHHhhhh--c--------ceEEEEecCCCH
Confidence 5899999999999999999999999766643 22222 1100000 0 11111 1 11
Q ss_pred Ccc----ccccceEecCCCcCccchhhHHHhhh-cCceEEEeCCCCCCCHHHHHHHHHCC--ceEeccccc
Q 006671 493 KPW----NERCDVAFPCASQNEIDQSDAINLVN-SGCRILVEGSNMPCTPEAVDVLKKAN--VLIAPAMAA 556 (636)
Q Consensus 493 eil----~~~cDIliPcA~~n~It~enA~~l~~-~~akiVvEgAN~P~T~eA~~iL~~rG--IlviPD~~a 556 (636)
+.| -.++|+++=+...++.+.--+....+ .+.+-|+==++ +++..++|.+-| ..+.|...+
T Consensus 57 ~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 57 DVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred HHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence 222 24899999888777766543332222 24443333333 356667888877 455565443
No 179
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.68 E-value=0.83 Score=48.22 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|++++|+|.|.|-||.++|+.|.+.|..=+++.|.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 367889999999999999999999999655777775
No 180
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.67 E-value=0.72 Score=49.43 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=43.2
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHC----CCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~----GAkVVaVSDs 448 (636)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.++ +|. |+++.+
T Consensus 141 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~at-Vtv~hs 197 (297)
T PRK14168 141 LPCTPAGIQEML----VRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANAT-VTIVHT 197 (297)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCE-EEEecC
Confidence 368988887655 4568999999999999 788999999999998 677 677776
No 181
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=91.62 E-value=0.26 Score=53.16 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.5
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
..|.|++|.|.|+|++|+.+|+.|...|.+|++..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d 176 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYD 176 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 46899999999999999999999999999977653
No 182
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.42 E-value=3.2 Score=43.84 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 396 G~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|.+.+++ ..+.++++++++|.|.|-.|+.++..|.+.|++-|.|.+.
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 667666655 3455788999999999999999999999999986677765
No 183
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=91.42 E-value=0.39 Score=53.52 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 398 GLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 398 GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|.+++-...+..-.++.|++|.|.|.|.+|..+++.|.+.|++-+.|+..
T Consensus 163 Sv~~~Av~la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR 213 (414)
T PRK13940 163 SVAFSAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR 213 (414)
T ss_pred CHHHHHHHHHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 344444344444335689999999999999999999999999877889887
No 184
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.24 E-value=1.9 Score=49.51 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+.+.+|+|.|+|.+|..++..+..+|++ |.+.|.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~ 195 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDT 195 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 34578999999999999999999999999 556665
No 185
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.22 E-value=5.7 Score=42.27 Aligned_cols=125 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCC-ceeeCC-CC
Q 006671 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYAR-SKYYDE-AK 493 (636)
Q Consensus 416 GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~-a~~i~~-~e 493 (636)
.++|+|.|.|++|...|..|.+.|..| .+.+. +.+.++.+.........+... ..+. ....+. .+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V-~~~~r----------~~~~~~~i~~~~~~~~~~~g~--~~~~~~~~~~~~~e 70 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPV-RLWAR----------RPEFAAALAAERENREYLPGV--ALPAELYPTADPEE 70 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeE-EEEeC----------CHHHHHHHHHhCcccccCCCC--cCCCCeEEeCCHHH
Confidence 358999999999999999999999985 44444 222222232211110001010 0011 222211 11
Q ss_pred ccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCC-C-C---CHHHHHHHHH---CCc--eEecccccc
Q 006671 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM-P-C---TPEAVDVLKK---ANV--LIAPAMAAG 557 (636)
Q Consensus 494 il~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~-P-~---T~eA~~iL~~---rGI--lviPD~~aN 557 (636)
. ..+||+++-|.....+ .+-.+.+ ..++ +|+--+|+ . . +....+++.+ +++ +..|..+..
T Consensus 71 ~-~~~aD~Vi~~v~~~~~-~~v~~~l-~~~~-~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~ 140 (328)
T PRK14618 71 A-LAGADFAVVAVPSKAL-RETLAGL-PRAL-GYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE 140 (328)
T ss_pred H-HcCCCEEEEECchHHH-HHHHHhc-CcCC-EEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence 1 2479999998877754 3333444 2233 55566774 2 1 3344456655 564 445666555
No 186
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.07 E-value=0.46 Score=44.05 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=29.1
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 416 GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+||+|.|.|.||..+|+.|...|..-+.+.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 479999999999999999999999977788775
No 187
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=90.84 E-value=5.3 Score=45.48 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=63.6
Q ss_pred CCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHHHHHHHHH-hC--CCCCCcEEEEecCccHH
Q 006671 352 EMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILAD-MN--KELKGLRCVVSGSGKIA 428 (636)
Q Consensus 352 DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~-~g--~~l~GkrVaIqGfGNVG 428 (636)
|++...-|++-|+-+|+.- ..+..+-.|+++-|.. .+ ...+.++|+|-|||-+|
T Consensus 83 ~l~~~~~d~g~l~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~InGFGRIG 139 (477)
T PRK08289 83 DLGPARVDIGKLAVKYKAE-----------------------GDGSDVEAFVAEELADAVGGADDIEPRDVVLYGFGRIG 139 (477)
T ss_pred CCCcccccHHHHHHHHhhc-----------------------cCCCcHHHHHHHHHhhhhcCCCCCCCceEEEECCCHHH
Confidence 4445555777787777411 1233455666555553 22 23667899999999999
Q ss_pred HHHHHHHHHC-----CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCc
Q 006671 429 MHVLEKLIAY-----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (636)
Q Consensus 429 ~~aAe~L~e~-----GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l 476 (636)
+.+++.+.+. +.++|+|-+..+.+ -|.+.+..|+++-...|++
T Consensus 140 R~v~R~~~~~~~~~~~l~lvAIn~~~nd~-----~d~~~~ayLLkyDSvhG~f 187 (477)
T PRK08289 140 RLLARLLIEKTGGGNGLRLRAIVVRKGSE-----GDLEKRASLLRRDSVHGPF 187 (477)
T ss_pred HHHHHHHHhccCCCCCeEEEEEecCCCCC-----CCHHHHHHHhhhhcCCCCC
Confidence 9999998865 57899998764322 3667776676655555554
No 188
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.76 E-value=3.2 Score=44.04 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
..|.+|+|.|.|.||..+++.+...|++|++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 478999999999999999999999999976654
No 189
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.74 E-value=1.2 Score=46.39 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|.|.|+|++|...|+.|.+.|.+|+ +.|.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~ 33 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDR 33 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcC
Confidence 479999999999999999999999864 4454
No 190
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=90.68 E-value=1.4 Score=46.32 Aligned_cols=112 Identities=24% Similarity=0.293 Sum_probs=69.5
Q ss_pred CcEEEEecCccHHH-HHHHHHHHCC--CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-CC
Q 006671 416 GLRCVVSGSGKIAM-HVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DE 491 (636)
Q Consensus 416 GkrVaIqGfGNVG~-~aAe~L~e~G--AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i-~~ 491 (636)
-.||.|.|.|+.+. +.+..+.+.+ +.+++|.|+ |.+.+. +..++ |+-.+.. +-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~----------~~~~a~---~~a~~----------~~~~~~~~~~ 59 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR----------DPERAE---AFAEE----------FGIAKAYTDL 59 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC----------CHHHHH---HHHHH----------cCCCcccCCH
Confidence 36899999997774 4666777765 599999997 333322 11121 1111122 23
Q ss_pred CCcccc-ccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHH---HHHCCceEe
Q 006671 492 AKPWNE-RCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDV---LKKANVLIA 551 (636)
Q Consensus 492 ~eil~~-~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~i---L~~rGIlvi 551 (636)
++++.. ++|+++=|+ .+..+.+-+..-++.|..++||=-=..+..|+.++ -+++|+.+.
T Consensus 60 ~~ll~~~~iD~V~Iat-p~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 60 EELLADPDIDAVYIAT-PNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred HHHhcCCCCCEEEEcC-CChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 455654 488888765 56678888888788899999996322233455533 356666544
No 191
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.62 E-value=0.81 Score=48.69 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=43.6
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfG-NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..||+. +|++.+.+++||+|+|.|-+ .||.-+|.+|.+.||. |+++.+
T Consensus 137 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~At-Vti~hs 189 (281)
T PRK14183 137 VPCTPLGVME----LLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANAT-VDICHI 189 (281)
T ss_pred CCCcHHHHHH----HHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 4689888754 55666899999999999965 8999999999999998 568876
No 192
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.59 E-value=0.8 Score=47.28 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=32.0
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|++++|+|.|.|-+|..+|+.|...|..=+.+.|.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 467889999999999999999999999877777775
No 193
>PLN02306 hydroxypyruvate reductase
Probab=90.56 E-value=0.34 Score=53.54 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHH-HCCCEEEEE
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSV 445 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~-e~GAkVVaV 445 (636)
|.+|.|+||.|.|+|++|+.+|+.|. ..|++|++.
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~ 195 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 45789999999999999999999985 899997655
No 194
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=90.53 E-value=4.1 Score=43.15 Aligned_cols=131 Identities=16% Similarity=0.063 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g 474 (636)
-|+|.+.+++. .+.++++++|+|.|.|-+|+.++-.|.+.|++-|.|.+. +.++...|.+....
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------~~~ka~~La~~~~~-- 173 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------DTSRAQALADVINN-- 173 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC----------CHHHHHHHHHHHhh--
Confidence 36777777753 334678999999999999999999999999977888886 33443333322110
Q ss_pred CccccccccCC--ceeeCC---CCccccccceEecCCCcCccch----hhHHHhhhcCceEEEeCCCCCCCHHHHHHHHH
Q 006671 475 SLRDYSKTYAR--SKYYDE---AKPWNERCDVAFPCASQNEIDQ----SDAINLVNSGCRILVEGSNMPCTPEAVDVLKK 545 (636)
Q Consensus 475 ~l~~y~~~~p~--a~~i~~---~eil~~~cDIliPcA~~n~It~----enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~ 545 (636)
.++. ....+. .+.. ..+||+|-|..-+.-.. -+...+ ....+|.+-.-.|....-.+.-++
T Consensus 174 -------~~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l--~~~~~v~D~vY~P~~T~ll~~A~~ 243 (283)
T PRK14027 174 -------AVGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCL--TKDHWVGDVVYMPIETELLKAARA 243 (283)
T ss_pred -------ccCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHc--CCCcEEEEcccCCCCCHHHHHHHH
Confidence 0111 011110 0111 36899988775332111 111222 245688888877743333444556
Q ss_pred CCceEe
Q 006671 546 ANVLIA 551 (636)
Q Consensus 546 rGIlvi 551 (636)
+|..++
T Consensus 244 ~G~~~~ 249 (283)
T PRK14027 244 LGCETL 249 (283)
T ss_pred CCCEEE
Confidence 665444
No 195
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.50 E-value=1.9 Score=48.90 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.0
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|+|.|++|...|..|...|..| .+.|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V-~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDV-AVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 48999999999999999999999984 56665
No 196
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.30 E-value=0.42 Score=46.22 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=27.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+...+|+|.|.|+||..+++.|..+|++++.+-+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~ 51 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDE 51 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccC
Confidence 35568999999999999999999999999665533
No 197
>PRK07680 late competence protein ComER; Validated
Probab=90.29 E-value=0.96 Score=46.90 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=63.1
Q ss_pred EEEEecCccHHHHHHHHHHHCCC---EEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCc
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GA---kVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (636)
+|.|.|.|++|..+++.|.+.|. .-|.+.|. +.+.+..+ ... +++.....+..-
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r----------~~~~~~~~---~~~----------~~g~~~~~~~~~ 58 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR----------TPAKAYHI---KER----------YPGIHVAKTIEE 58 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC----------CHHHHHHH---HHH----------cCCeEEECCHHH
Confidence 68999999999999999999884 23566665 22222111 111 122332222111
Q ss_pred cccccceEecCCCcCccchhhHHHhhh--cCceEEEeCCCCCCCHHHHHHHHHCCceEecccc
Q 006671 495 WNERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMA 555 (636)
Q Consensus 495 l~~~cDIliPcA~~n~It~enA~~l~~--~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~ 555 (636)
+..+||++|-|.....+ .+-...|.. ..-++|+--+|+-........+..+.+.++|...
T Consensus 59 ~~~~aDiVilav~p~~~-~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~~ 120 (273)
T PRK07680 59 VISQSDLIFICVKPLDI-YPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSIT 120 (273)
T ss_pred HHHhCCEEEEecCHHHH-HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCChH
Confidence 22479999998865443 222333321 1234666666644333344555555677888643
No 198
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.23 E-value=0.64 Score=48.66 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..|.+|+|.|.|.||..+++.+...|+++|.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 36889999999999999999999999997777765
No 199
>PRK14851 hypothetical protein; Provisional
Probab=90.20 E-value=2.1 Score=50.84 Aligned_cols=125 Identities=8% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (636)
.|++++|+|.|.|-||..+|+.|...|..=+.+.|.+= +++.-|+-.-+ . +..+. ..+.++.. .+
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~---~-------~~~dv--G~~Kv~v~-~~ 104 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFG---A-------RVPSF--GRPKLAVM-KE 104 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcC---c-------ChhhC--CCHHHHHH-HH
Confidence 36789999999999999999999999987777877521 11111111000 0 00000 00011100 01
Q ss_pred CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCH---HHHHHHHHCCceEeccc
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTP---EAVDVLKKANVLIAPAM 554 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~---eA~~iL~~rGIlviPD~ 554 (636)
.+.++..++=|-+ ...-|+.+|+..+++ ++.+|+++..++... ...+.-.++||.++=.-
T Consensus 105 ~l~~inP~~~I~~-~~~~i~~~n~~~~l~-~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 105 QALSINPFLEITP-FPAGINADNMDAFLD-GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred HHHHhCCCCeEEE-EecCCChHHHHHHHh-CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 1222222222222 233567788877755 799999999876422 12234467888777433
No 200
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.19 E-value=2.7 Score=43.88 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=26.9
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|.+|..+|..|.+.|..| .+-|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V-~~~d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQT-TLVDI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcE-EEEeC
Confidence 47999999999999999999999985 45565
No 201
>PRK10206 putative oxidoreductase; Provisional
Probab=90.05 E-value=0.45 Score=51.27 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=66.0
Q ss_pred cEEEEecCccHHH-HHHHHH-HH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC-CC
Q 006671 417 LRCVVSGSGKIAM-HVLEKL-IA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (636)
Q Consensus 417 krVaIqGfGNVG~-~aAe~L-~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~-~~ 492 (636)
.||.|+|+|+.+. .-+..+ .. .++.+++|+|. +++ ..+ ..+ .|+...+.+ -+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~-----~~~---~~~------~~~----------~~~~~~~~~~~~ 57 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR-----HAK---PEE------QAP----------IYSHIHFTSDLD 57 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC-----Chh---HHH------HHH----------hcCCCcccCCHH
Confidence 3799999999775 223434 32 47899999997 221 111 111 122222222 24
Q ss_pred Cccc-cccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHH---HHHCCceEe
Q 006671 493 KPWN-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDV---LKKANVLIA 551 (636)
Q Consensus 493 eil~-~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~i---L~~rGIlvi 551 (636)
++++ .++|+++=|. .+..+.+.+...++.|..++||=-=..+..|++++ .+++|+.+.
T Consensus 58 ell~~~~iD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 58 EVLNDPDVKLVVVCT-HADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred HHhcCCCCCEEEEeC-CchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 5553 5789888865 57778888888888899999985222233555544 356666543
No 202
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.87 E-value=6.8 Score=44.62 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCC--CEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYG--AIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~G--AkVVaVSDs 448 (636)
++|+|.|.|.||..+|-.|.+.| .+|+++ |.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D~ 34 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-DI 34 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-EC
Confidence 57999999999999999999985 777766 53
No 203
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.78 E-value=1.4 Score=48.47 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
.|+..+|+|.|.|-+|..+++.|...|..=+.+.|.+
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678899999999999999999999998668888854
No 204
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.78 E-value=1.3 Score=49.23 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=61.2
Q ss_pred CCCcEEEEecC----------ccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCcccccccc
Q 006671 414 LKGLRCVVSGS----------GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTY 483 (636)
Q Consensus 414 l~GkrVaIqGf----------GNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~ 483 (636)
++||+|+|-|. -..+..+++.|.+.|++|+ +|||....-.. . .+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~--------aYDP~a~~~~~--------~----------~~ 361 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVI--------AYDPVAMENAF--------R----------NF 361 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEE--------EECchhhHHHH--------h----------cC
Confidence 99999999995 4567788999999999985 57887653211 0 12
Q ss_pred CCceeeCCCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCC
Q 006671 484 ARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 484 p~a~~i~~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
|+.++.+..+-.-..||+++-+.--+++-.-+-..+ -.+.++|..|-|.
T Consensus 362 ~~~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~-~m~~~~v~DgRni 410 (414)
T COG1004 362 PDVELESDAEEALKGADAIVINTEWDEFRDLDFEKL-LMKTPVVIDGRNI 410 (414)
T ss_pred CCceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh-hccCCEEEecccc
Confidence 334444433333457899998876555544333322 2378889888884
No 205
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.71 E-value=0.89 Score=48.34 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=43.8
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCc-cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfG-NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..+|..|++.. |++.+.+++|++|+|.|-+ .||..+|.+|...|+. |+++++
T Consensus 132 ~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~at-Vtv~hs 184 (279)
T PRK14178 132 APCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADAT-VTICHS 184 (279)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCe-eEEEec
Confidence 46898888655 4556889999999999987 9999999999999998 566665
No 206
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.66 E-value=1.5 Score=40.79 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.2
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+|.|.|.|.+|..+++.|...|..=+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 5899999999999999999999865677764
No 207
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.43 E-value=2.4 Score=46.27 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|++|+|.|+|-+|..+++++..+|++|++++-+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~ 199 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS 199 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5899999999999999999999999999888765
No 208
>PRK07877 hypothetical protein; Provisional
Probab=89.16 E-value=1.6 Score=52.08 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCC-EEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GA-kVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~ 491 (636)
.|+.++|+|.|.| ||+++|..|...|. -=+.+.|. |=++..-|.++. + +..+. ..+.++. ..
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~-------D~ve~sNLnRq~-~-----~~~di--G~~Kv~~-a~ 166 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF-------DTLELSNLNRVP-A-----GVFDL--GVNKAVV-AA 166 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC-------CEEccccccccc-C-----Chhhc--ccHHHHH-HH
Confidence 4778999999999 99999999999994 33666664 333322221110 0 00000 0011100 00
Q ss_pred CCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHH-HHHHHHCCceEecccccccccce
Q 006671 492 AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEA-VDVLKKANVLIAPAMAAGAGGVV 562 (636)
Q Consensus 492 ~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA-~~iL~~rGIlviPD~~aNAGGVi 562 (636)
+.+..+.-+|=|-+ ...-|+.+|+..+++ ++.+|+++.-+.-|.-. .+.-.++||.++ +.+.++|.+
T Consensus 167 ~~l~~inp~i~v~~-~~~~i~~~n~~~~l~-~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i--~~~~~~g~~ 234 (722)
T PRK07877 167 RRIAELDPYLPVEV-FTDGLTEDNVDAFLD-GLDVVVEECDSLDVKVLLREAARARRIPVL--MATSDRGLL 234 (722)
T ss_pred HHHHHHCCCCEEEE-EeccCCHHHHHHHhc-CCCEEEECCCCHHHHHHHHHHHHHcCCCEE--EEcCCCCCc
Confidence 11222222332222 234467788888764 68999999876533322 244467898888 555566666
No 209
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=89.04 E-value=1.2 Score=47.65 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=67.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHH-HHHHHHHHhhcCCccccccccCCceeeCCCCcc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMK-ISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~-L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (636)
.+|+++|+|++|+..|..|.+.|.. |.|.|. +.++ ...+. .. +++..+...-.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~-v~v~~r----------~~~ka~~~~~---~~------------Ga~~a~s~~ea 54 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHE-VTVYNR----------TPEKAAELLA---AA------------GATVAASPAEA 54 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCE-EEEEeC----------ChhhhhHHHH---Hc------------CCcccCCHHHH
Confidence 4799999999999999999999988 677776 2333 11111 11 22222211112
Q ss_pred ccccceEecCCCc-----Cccchhh--HHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCceEecccccccccce
Q 006671 496 NERCDVAFPCASQ-----NEIDQSD--AINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAAGAGGVV 562 (636)
Q Consensus 496 ~~~cDIliPcA~~-----n~It~en--A~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGIlviPD~~aNAGGVi 562 (636)
...|||+|-|-.. .++..++ +..+ +-++-+|--....| .+.+..+.++++|+.++= .--+||+.
T Consensus 55 a~~aDvVitmv~~~~~V~~V~~g~~g~~~~~-~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD--APVsGg~~ 126 (286)
T COG2084 55 AAEADVVITMLPDDAAVRAVLFGENGLLEGL-KPGAIVIDMSTISPETARELAAALAAKGLEFLD--APVSGGVP 126 (286)
T ss_pred HHhCCEEEEecCCHHHHHHHHhCccchhhcC-CCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe--cCccCCch
Confidence 3478998877652 2222211 1111 12444554444556 456777889999998872 33345554
No 210
>PRK07340 ornithine cyclodeaminase; Validated
Probab=89.01 E-value=2.1 Score=45.67 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=69.4
Q ss_pred CCCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (636)
...+++.|.|.|..|+..++.+.. .+.+-|.|.+. +.++...+.+..... . .....-+.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------~~~~a~~~a~~~~~~----~-----~~~~~~~~~ 183 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------TAASAAAFCAHARAL----G-----PTAEPLDGE 183 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHHHHHHhc----C-----CeeEECCHH
Confidence 467899999999999999999875 67676778776 233332222211110 0 111111112
Q ss_pred CccccccceEecCCCc--CccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEec
Q 006671 493 KPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 552 (636)
Q Consensus 493 eil~~~cDIliPcA~~--n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviP 552 (636)
+.. .++||++=|... ..++.. ++-++.+++=|++.|-..|.+..+..+--+|+-
T Consensus 184 ~av-~~aDiVitaT~s~~Pl~~~~-----~~~g~hi~~iGs~~p~~~El~~~~~~~a~v~vD 239 (304)
T PRK07340 184 AIP-EAVDLVVTATTSRTPVYPEA-----ARAGRLVVAVGAFTPDMAELAPRTVRGSRLYVD 239 (304)
T ss_pred HHh-hcCCEEEEccCCCCceeCcc-----CCCCCEEEecCCCCCCcccCCHHHHhhCeEEEc
Confidence 223 389999988764 444431 245899999999999877765444444333443
No 211
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.78 E-value=1 Score=45.02 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|+.++|.|.|.|.+|..+++.|...|..-+.+.|.
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~ 53 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDD 53 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 467889999999999999999999999987888875
No 212
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=88.56 E-value=0.58 Score=50.87 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=31.9
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
..|+|+||.|+|+|++|...|+.|...|.+|+...+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r 47 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVR 47 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEEC
Confidence 358999999999999999999999999999765544
No 213
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=88.47 E-value=1 Score=48.02 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=44.1
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCcc-HHHHHHHHHHHCCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGN-VG~~aAe~L~e~GAkVVaVSDs 448 (636)
...|-+|++. ++++.+.++.|++++|+|-+| ||..++.+|...+++ |+|+.+
T Consensus 136 ~PCTp~gi~~----ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naT-VtvcHs 188 (283)
T COG0190 136 LPCTPAGIMT----LLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANAT-VTVCHS 188 (283)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCE-EEEEcC
Confidence 3689888765 455668999999999999655 899999999999999 788887
No 214
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.31 E-value=6.4 Score=40.42 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=24.7
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEE--EEEeCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIP--VSVSDA 448 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkV--VaVSDs 448 (636)
+|.|.|+|++|+.+++.|.+.|..+ +.++|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 6999999999999999999887532 345553
No 215
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=88.21 E-value=1.1 Score=49.27 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.3
Q ss_pred cEEEEecCccHHHHHHHHHHHC-----CCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY-----GAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~-----GAkVVaVSDs 448 (636)
.||+|=|||-+|+.+.+.+.+. ...||+|-|.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 4899999999999999998874 4799999985
No 216
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.16 E-value=1.3 Score=48.40 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=32.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
.|++++|+|.|.|-+|..+++.|...|..=+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4788999999999999999999999998767888753
No 217
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.06 E-value=9.1 Score=42.23 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.3
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+|.|.|.|.||..+|..|.+.|..|++ .|.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~-~d~ 31 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTG-VDI 31 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEE-EEC
Confidence 799999999999999999999999654 454
No 218
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=87.95 E-value=0.73 Score=46.91 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=34.7
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++|++|+|+|-|.||..=++.|+..|++|+.+|+.
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 4789999999999999999999999999999988886
No 219
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=87.91 E-value=2.5 Score=46.15 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=70.8
Q ss_pred CcEEEEecCccHHHHHHHHHHHC--CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCC
Q 006671 416 GLRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (636)
Q Consensus 416 GkrVaIqGfGNVG~~aAe~L~e~--GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (636)
-.||+|.|.| .|..-++.+.+. ++++++|+|. |.++.. +..+..+ +.. +-+-++
T Consensus 3 ~~rVgViG~~-~G~~h~~al~~~~~~~eLvaV~d~----------~~erA~---~~A~~~g-i~~---------y~~~ee 58 (343)
T TIGR01761 3 VQSVVVCGTR-FGQFYLAAFAAAPERFELAGILAQ----------GSERSR---ALAHRLG-VPL---------YCEVEE 58 (343)
T ss_pred CcEEEEEeHH-HHHHHHHHHHhCCCCcEEEEEEcC----------CHHHHH---HHHHHhC-CCc---------cCCHHH
Confidence 4689999994 687777777764 6899999997 333322 2212111 111 112234
Q ss_pred cc-ccccceE-ecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCH-HHHHHH---HHCCceEe
Q 006671 494 PW-NERCDVA-FPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTP-EAVDVL---KKANVLIA 551 (636)
Q Consensus 494 il-~~~cDIl-iPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~-eA~~iL---~~rGIlvi 551 (636)
++ +.++|++ +|.++.|..+.+.|...++.|..++||= |++. ||++++ +++|+.+.
T Consensus 59 ll~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK---Pla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 59 LPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEH---PLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC---CCCHHHHHHHHHHHHHcCCEEE
Confidence 44 3455544 5667788889999999999999999996 6554 565544 57787766
No 220
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=87.89 E-value=0.98 Score=48.11 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=61.1
Q ss_pred cEEEEecCccHHHHHHHHHH-HCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-CCc
Q 006671 417 LRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKP 494 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~-e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~ei 494 (636)
.+|+|.|.|++|...+..+. ..+..+++|+|. ||+-- .+. ..+..| +. .+.++ +.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~-----d~es~---~la----~A~~~G-i~---------~~~~~~e~l 59 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI-----DPESD---GLA----RARELG-VK---------TSAEGVDGL 59 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC-----CcccH---HHH----HHHHCC-CC---------EEECCHHHH
Confidence 47999999999997765555 468899999997 54321 110 111111 11 11212 223
Q ss_pred cc-cccceEecCCCcCccchhhHHHhhhcCceEEEeC--CCCC
Q 006671 495 WN-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEG--SNMP 534 (636)
Q Consensus 495 l~-~~cDIliPcA~~n~It~enA~~l~~~~akiVvEg--AN~P 534 (636)
+. .++|+++-|+. +..+.+.+....+.|+.+|+|- +++|
T Consensus 60 l~~~dIDaV~iaTp-~~~H~e~a~~al~aGk~VIdekPa~~~p 101 (285)
T TIGR03215 60 LANPDIDIVFDATS-AKAHARHARLLAELGKIVIDLTPAAIGP 101 (285)
T ss_pred hcCCCCCEEEECCC-cHHHHHHHHHHHHcCCEEEECCccccCC
Confidence 32 46899998874 5578888988888999998875 3445
No 221
>PRK14852 hypothetical protein; Provisional
Probab=87.81 E-value=2.7 Score=51.57 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=72.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC-CccccccccCCceeeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-SLRDYSKTYARSKYYDE 491 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g-~l~~y~~~~p~a~~i~~ 491 (636)
.|+..+|+|.|.|-||..+|+.|...|..-+.+.|-+ =++..-|.+ +-. +..+. .-+.++.. .
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D-------~Ve~SNLNR------Q~l~~~~dI--G~~Kaeva-a 392 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD-------AYSPVNLNR------QYGASIASF--GRGKLDVM-T 392 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC-------Eeccccccc------ccCCChhhC--CChHHHHH-H
Confidence 4788999999999999999999999998778888752 122111100 000 00000 00001000 0
Q ss_pred CCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHH---HHHHHCCceEeccccccccc
Q 006671 492 AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAV---DVLKKANVLIAPAMAAGAGG 560 (636)
Q Consensus 492 ~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~---~iL~~rGIlviPD~~aNAGG 560 (636)
+.+.++..+|=|-+-.. -|+.+|+..+++ ++.+|+++..++.+.... ....++||.++=.-+.--+|
T Consensus 393 ~~l~~INP~v~I~~~~~-~I~~en~~~fl~-~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g 462 (989)
T PRK14852 393 ERALSVNPFLDIRSFPE-GVAAETIDAFLK-DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSC 462 (989)
T ss_pred HHHHHHCCCCeEEEEec-CCCHHHHHHHhh-CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence 11222222332322222 357788888764 899999999887553322 33478888777443333333
No 222
>PRK14982 acyl-ACP reductase; Provisional
Probab=87.49 E-value=1.3 Score=48.23 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=43.5
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCcEEEEecC-ccHHHHHHHHHHH-CCCEEEEEeCC
Q 006671 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDA 448 (636)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIqGf-GNVG~~aAe~L~e-~GAkVVaVSDs 448 (636)
.|.+-....++.+.+.++.+++|++|+|.|. |.+|+.+|+.|.+ .|.+-+.+.+.
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 4666666677877888888999999999998 8999999999986 46533455554
No 223
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.43 E-value=3.9 Score=47.64 Aligned_cols=141 Identities=15% Similarity=0.139 Sum_probs=81.0
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCcc-
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW- 495 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil- 495 (636)
..|+|.|+|.+|+.+++.|.+.|..+ .+.|. |.+.++.+ ++ .+ ..-| |.++ +..++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~v-vvID~----------d~~~v~~~---~~-~g-~~v~---~GDa---t~~~~L~ 458 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRI-TVLER----------DISAVNLM---RK-YG-YKVY---YGDA---TQLELLR 458 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCE-EEEEC----------CHHHHHHH---Hh-CC-CeEE---EeeC---CCHHHHH
Confidence 47999999999999999999999985 45565 33333222 11 11 1111 1111 112233
Q ss_pred ---ccccceEecCCCcCccchhhHHHhh--hcCceEEEeCCCCCCCHHHHHHHHHCCceE-ecccccccccceeecchhc
Q 006671 496 ---NERCDVAFPCASQNEIDQSDAINLV--NSGCRILVEGSNMPCTPEAVDVLKKANVLI-APAMAAGAGGVVAGELELN 569 (636)
Q Consensus 496 ---~~~cDIliPcA~~n~It~enA~~l~--~~~akiVvEgAN~P~T~eA~~iL~~rGIlv-iPD~~aNAGGVivS~~E~~ 569 (636)
-.+||+++=|....+.|..-+..+. ...+++|+-.. +++..+.|++.|+.. +|.-...+ +++.
T Consensus 459 ~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~es~-------l~l~ 527 (601)
T PRK03659 459 AAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETFSSA-------LELG 527 (601)
T ss_pred hcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHHHHH-------HHHH
Confidence 2378988776655444433322221 23578888664 467788999999864 56654432 3332
Q ss_pred -cccCCCCCCHHHHHHHHHHHH
Q 006671 570 -QECNMVHWSPEDFESKLQEAM 590 (636)
Q Consensus 570 -qN~~~~~ws~eeV~~rL~~~m 590 (636)
+-+..+..+.+++.+.+++.-
T Consensus 528 ~~~L~~lg~~~~~~~~~~~~~r 549 (601)
T PRK03659 528 RKTLVSLGMHPHQAQRAQQHFR 549 (601)
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 122234566788877774433
No 224
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.28 E-value=9.6 Score=40.26 Aligned_cols=124 Identities=10% Similarity=0.108 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcC
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g 474 (636)
-++|.+.+++. .+.+ .+++|+|.|.|-.|+.++-.|.+.|++-|.|.+. +.++...|.+.
T Consensus 106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------~~~~a~~la~~----- 165 (272)
T PRK12550 106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR----------NEKTGKALAEL----- 165 (272)
T ss_pred CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC----------CHHHHHHHHHH-----
Confidence 36777666653 3444 3579999999999999999999999977888887 22333223221
Q ss_pred CccccccccCCceeeCCCCccccccceEecCCCcCccchh-------hHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCC
Q 006671 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQS-------DAINLVNSGCRILVEGSNMPCTPEAVDVLKKAN 547 (636)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~~n~It~e-------nA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rG 547 (636)
+. + .+. +.+-...+||+|-|..-+..... +...| ....+|.+-.-.|....-.+.-+++|
T Consensus 166 -~~-~-------~~~--~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l--~~~~~v~D~vY~P~~T~ll~~A~~~G 232 (272)
T PRK12550 166 -YG-Y-------EWR--PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEI--DAASVVFDVVALPAETPLIRYARARG 232 (272)
T ss_pred -hC-C-------cch--hhcccccCCEEEECCccccCCCCccccCCCCHHHc--CCCCEEEEeecCCccCHHHHHHHHCc
Confidence 00 0 000 01112358999988764332111 11122 23467888887774333444456666
Q ss_pred ceEe
Q 006671 548 VLIA 551 (636)
Q Consensus 548 Ilvi 551 (636)
..++
T Consensus 233 ~~~i 236 (272)
T PRK12550 233 KTVI 236 (272)
T ss_pred CeEe
Confidence 5554
No 225
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=87.27 E-value=14 Score=41.32 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=25.0
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 416 GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
-.+|.|.|.|.||..+|..|.+ |..|+ +-|.
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~-g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVV-GFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEE-EEeC
Confidence 4789999999999999998776 67754 4554
No 226
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.25 E-value=1.3 Score=47.19 Aligned_cols=52 Identities=25% Similarity=0.242 Sum_probs=42.9
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHH----CCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA----YGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e----~GAkVVaVSDs 448 (636)
..+|..||+.. |++.+.+++||+|+|.| +..||.-++.+|.+ .+|. |+++++
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~At-Vt~~hs 193 (286)
T PRK14184 137 RPCTPAGVMTL----LERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANAT-VTVCHS 193 (286)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCE-EEEEeC
Confidence 36898887654 55678999999999999 77899999999998 8898 566665
No 227
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=87.19 E-value=1.8 Score=45.36 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=57.4
Q ss_pred EecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee-CCCCcccccc
Q 006671 421 VSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPWNERC 499 (636)
Q Consensus 421 IqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i-~~~eil~~~c 499 (636)
|.|+|++|..+|+.|.+.|.+| .+.|. +.+++..+. +. ++... +..+ .-.+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V-~v~dr----------~~~~~~~l~---~~------------g~~~~~s~~~-~~~~a 53 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPV-RVFDL----------FPDAVEEAV---AA------------GAQAAASPAE-AAEGA 53 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeE-EEEeC----------CHHHHHHHH---Hc------------CCeecCCHHH-HHhcC
Confidence 4699999999999999999984 45554 223322221 11 11111 1111 22378
Q ss_pred ceEecCCCcCccchhhH---HHhh---hcCceEEEeCCC-CC-CCHHHHHHHHHCCceEec
Q 006671 500 DVAFPCASQNEIDQSDA---INLV---NSGCRILVEGSN-MP-CTPEAVDVLKKANVLIAP 552 (636)
Q Consensus 500 DIliPcA~~n~It~enA---~~l~---~~~akiVvEgAN-~P-~T~eA~~iL~~rGIlviP 552 (636)
||+|-|-.......+-. ..+. ..+ ++|+.-.. .| ++.+..+.+.++|+.|+-
T Consensus 54 dvVil~vp~~~~~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 54 DRVITMLPAGQHVISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred CEEEEeCCChHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 99988876533222211 1221 223 35555443 34 345556788889998875
No 228
>PRK08605 D-lactate dehydrogenase; Validated
Probab=87.16 E-value=0.72 Score=49.70 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHH-HHCCCEEEEE
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKL-IAYGAIPVSV 445 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L-~e~GAkVVaV 445 (636)
+.+|.|++|.|.|+|++|+.+|+.| ...|.+|++.
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~ 176 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAY 176 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4578999999999999999999999 5578887653
No 229
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.11 E-value=1.6 Score=46.86 Aligned_cols=52 Identities=27% Similarity=0.482 Sum_probs=42.3
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHH----CCCEEEEEeCC
Q 006671 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA----YGAIPVSVSDA 448 (636)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e----~GAkVVaVSDs 448 (636)
..+|..|++ ++|++.+.+++||+|+|.| +..||.-++.+|.+ .|+. |+++.+
T Consensus 139 ~PcTp~ail----~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~at-Vt~~hs 195 (295)
T PRK14174 139 VSCTPYGIL----ELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCT-VTICHS 195 (295)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCE-EEEEeC
Confidence 468988874 5566778999999999999 67899999999987 6887 566665
No 230
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=86.99 E-value=1.4 Score=49.07 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (636)
++.|++|.|.|.|.+|..+++.|...|+.-|.|++.+ .+.+..+. ...+ ...++.+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~----------~~ra~~la---~~~g-----------~~~~~~~ 234 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT----------LERAEELA---EEFG-----------GEAIPLD 234 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC----------HHHHHHHH---HHcC-----------CcEeeHH
Confidence 6899999999999999999999999998656777762 22221111 1111 0111101
Q ss_pred Ccc--ccccceEecCCC--cCccchhhHHHhhh---cCceEEEeCCCCC-CCHH
Q 006671 493 KPW--NERCDVAFPCAS--QNEIDQSDAINLVN---SGCRILVEGSNMP-CTPE 538 (636)
Q Consensus 493 eil--~~~cDIliPcA~--~n~It~enA~~l~~---~~akiVvEgAN~P-~T~e 538 (636)
++. -.++||+|-|.. ...|+.+....... .+-.+|+.-|+-. +.|+
T Consensus 235 ~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 235 ELPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred HHHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 111 136899999865 45677776655422 1346888888633 4443
No 231
>PRK06046 alanine dehydrogenase; Validated
Probab=86.67 E-value=4.7 Score=43.35 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=68.1
Q ss_pred CCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccC-CceeeCC-
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-RSKYYDE- 491 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p-~a~~i~~- 491 (636)
.-++|.|.|.|..|++.++.|.. .+.+.|.|.|. ++ +....+.+...+. ++ ..+..++
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r-----~~-----~~~~~~~~~~~~~---------~~~~v~~~~~~ 188 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR-----TK-----SSAEKFVERMSSV---------VGCDVTVAEDI 188 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC-----CH-----HHHHHHHHHHHhh---------cCceEEEeCCH
Confidence 35799999999999999988874 57888999887 22 3322222211110 11 1122222
Q ss_pred CCccccccceEecCCCcC--ccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEe
Q 006671 492 AKPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIA 551 (636)
Q Consensus 492 ~eil~~~cDIliPcA~~n--~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlvi 551 (636)
++.++ +||++=|.... .++.+ . ++.++.+.+=|++.|-..|.+..+-++.-+|+
T Consensus 189 ~~~l~--aDiVv~aTps~~P~~~~~---~-l~~g~hV~~iGs~~p~~~El~~~~~~~a~vvv 244 (326)
T PRK06046 189 EEACD--CDILVTTTPSRKPVVKAE---W-IKEGTHINAIGADAPGKQELDPEILLRAKVVV 244 (326)
T ss_pred HHHhh--CCEEEEecCCCCcEecHH---H-cCCCCEEEecCCCCCccccCCHHHHhCCcEEE
Confidence 33443 99999877643 23333 2 25589999999999976776655544543344
No 232
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.58 E-value=0.94 Score=48.71 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+|++|.|.|+||+|...|+.|.+.|.+|+...+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence 57999999999999999999999999876544443
No 233
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.48 E-value=1.4 Score=48.08 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
.|+.++|+|.|.|-+|..+++.|...|..=+.+.|.+
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3678899999999999999999999998778888853
No 234
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=86.26 E-value=1.9 Score=45.51 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=60.1
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC-CCCccc
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EAKPWN 496 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~-~~eil~ 496 (636)
+|.|.|.|++|...|+.|.+.|..| .|.|. +++ .++ +. . . ++...+ +.+ ..
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v-~v~~~-----~~~---~~~---~~---~-~-----------g~~~~~s~~~-~~ 53 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQL-HVTTI-----GPV---ADE---LL---S-L-----------GAVSVETARQ-VT 53 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeE-EEEeC-----CHh---HHH---HH---H-c-----------CCeecCCHHH-HH
Confidence 6899999999999999999999875 46665 221 111 11 1 1 121111 111 22
Q ss_pred cccceEecCCCcCccchhhH---HHhhh--cCceEEEeCCC-CC-CCHHHHHHHHHCCceEec
Q 006671 497 ERCDVAFPCASQNEIDQSDA---INLVN--SGCRILVEGSN-MP-CTPEAVDVLKKANVLIAP 552 (636)
Q Consensus 497 ~~cDIliPcA~~n~It~enA---~~l~~--~~akiVvEgAN-~P-~T~eA~~iL~~rGIlviP 552 (636)
..||++|-|-.......+.. ..++. ..-++|+.-.. .| ++.+..+.+.++|+.|+-
T Consensus 54 ~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 54 EASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred hcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 47899987765432111110 00111 12245665544 44 455567888999998774
No 235
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.16 E-value=2.2 Score=46.98 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=29.0
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+.++|.|.|+|..|..+|+.|.+.|++ |.++|.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~-V~g~D~ 34 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVY-VIGVDK 34 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCE-EEEEeC
Confidence 347899999999999999999999998 566775
No 236
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=86.03 E-value=1.9 Score=44.93 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=60.7
Q ss_pred EEEEecCccHHHHHHHHHHH--CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCcc
Q 006671 418 RCVVSGSGKIAMHVLEKLIA--YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e--~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (636)
+|.|+|+|+.|..+++++.+ ..++.++|.|. |.++...+. .. + +.....+-+++.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~----------~~ek~~~~~---~~---~-------~~~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR----------DEEKAKELE---AS---V-------GRRCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecC----------CHHHHHHHH---hh---c-------CCCccccHHHHh
Confidence 68999999999999998875 36899999987 223321111 11 1 111111123344
Q ss_pred ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHH
Q 006671 496 NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL 543 (636)
Q Consensus 496 ~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL 543 (636)
.+.|+++.||.++.+-+- +.++.++++.+|+=.--.-..++-.+.|
T Consensus 59 -~~~DlvVEaAS~~Av~e~-~~~~L~~g~d~iV~SVGALad~~l~erl 104 (255)
T COG1712 59 -AEVDLVVEAASPEAVREY-VPKILKAGIDVIVMSVGALADEGLRERL 104 (255)
T ss_pred -hccceeeeeCCHHHHHHH-hHHHHhcCCCEEEEechhccChHHHHHH
Confidence 688999999988776443 4455567766665332222355544433
No 237
>PLN02688 pyrroline-5-carboxylate reductase
Probab=85.95 E-value=7 Score=40.04 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGA 440 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GA 440 (636)
.+|.|.|+|++|...++.|.+.|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 378999999999999999999986
No 238
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=85.88 E-value=2 Score=46.59 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=76.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (636)
=+.||-++|-|+|+||...|..|.-.|++ |.|++. || +.+|...+ ..| +..+-+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~-VivTEi-----DP----I~ALQAaM---------eG~-------~V~tm~ 264 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGAR-VIVTEI-----DP----ICALQAAM---------EGY-------EVTTLE 264 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcE-EEEecc-----Cc----hHHHHHHh---------hcc-------EeeeHH
Confidence 37899999999999999999999999998 567765 33 22332121 122 222111
Q ss_pred CccccccceEecCCC-cCccchhhHHHhhhcCceEEE-----------eCCCCC------CCHHHHHHHHHCC---ceEe
Q 006671 493 KPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILV-----------EGSNMP------CTPEAVDVLKKAN---VLIA 551 (636)
Q Consensus 493 eil~~~cDIliPcA~-~n~It~enA~~l~~~~akiVv-----------EgAN~P------~T~eA~~iL~~rG---Ilvi 551 (636)
+. -.++|||+-+.. .++|+.+.-+++. +.| ||| -+-|-| +-|..+++.-..| |+++
T Consensus 265 ea-~~e~difVTtTGc~dii~~~H~~~mk-~d~-IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~iIlLA 341 (434)
T KOG1370|consen 265 EA-IREVDIFVTTTGCKDIITGEHFDQMK-NDA-IVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHIILLA 341 (434)
T ss_pred Hh-hhcCCEEEEccCCcchhhHHHHHhCc-CCc-EEeccccccceeehhhccCCcceeeecccccceeeccCCcEEEEEe
Confidence 11 236799998775 5788888777762 232 222 122222 1233444444444 5667
Q ss_pred cccccccccce-eecchh
Q 006671 552 PAMAAGAGGVV-AGELEL 568 (636)
Q Consensus 552 PD~~aNAGGVi-vS~~E~ 568 (636)
-+-+.|-|-.+ .+.|-|
T Consensus 342 eGRLvNL~CatghpSFvm 359 (434)
T KOG1370|consen 342 EGRLVNLGCATGHPSFVM 359 (434)
T ss_pred cCceeecccccCCCceEE
Confidence 77888888776 444443
No 239
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=85.81 E-value=1.5 Score=44.00 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHH--HHCCCEEEEEeCC
Q 006671 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKL--IAYGAIPVSVSDA 448 (636)
Q Consensus 396 G~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L--~e~GAkVVaVSDs 448 (636)
||=|.+.++..-+.++.. ...+|+|.|.|++|..+++.+ ...|.+++++.|.
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 677777666665666655 567999999999999998864 3578999999986
No 240
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=85.73 E-value=0.84 Score=49.93 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.-++|+|.||||.|+..|+.|...|..+++.+-+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRs 84 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRS 84 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcc
Confidence 3468999999999999999999999997666544
No 241
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=85.70 E-value=1.9 Score=47.65 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+..+|.|.|.|-+|..+|+.|...|..=+.+.|.
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 56789999999999999999999999877888884
No 242
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=85.69 E-value=7.9 Score=35.56 Aligned_cols=104 Identities=20% Similarity=0.305 Sum_probs=56.6
Q ss_pred cEEEEec----CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC
Q 006671 417 LRCVVSG----SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (636)
Q Consensus 417 krVaIqG----fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (636)
|+|+|.| -++.|..+.+.|.+.|.+|..|.-..+.|. | +.- |++..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~---G------------------~~~----y~sl~----- 50 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL---G------------------IKC----YPSLA----- 50 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET---T------------------EE-----BSSGG-----
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC---c------------------EEe----ecccc-----
Confidence 6899999 599999999999999999988844322210 1 111 22211
Q ss_pred CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEe-cc
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIA-PA 553 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlvi-PD 553 (636)
++ -.++|+++-|.....+ .+-.+.+.+.+++.|.=-+- -..+++.+.+++.|+.++ |.
T Consensus 51 e~-p~~iDlavv~~~~~~~-~~~v~~~~~~g~~~v~~~~g-~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 51 EI-PEPIDLAVVCVPPDKV-PEIVDEAAALGVKAVWLQPG-AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp GC-SST-SEEEE-S-HHHH-HHHHHHHHHHT-SEEEE-TT-S--HHHHHHHHHTT-EEEESS
T ss_pred CC-CCCCCEEEEEcCHHHH-HHHHHHHHHcCCCEEEEEcc-hHHHHHHHHHHHcCCEEEeCC
Confidence 11 2467777776654332 22233333335554432111 567888999999999988 64
No 243
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=85.67 E-value=2.8 Score=45.49 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=60.0
Q ss_pred cEEEEecC-ccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCc
Q 006671 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (636)
Q Consensus 417 krVaIqGf-GNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (636)
++|+|.|. |.||+.+++.|.+. +.+++++++. ...|-.+.+ . ...+... ....+-+.++.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-----~~~g~~l~~------~---~~~~~~~----~~~~~~~~~~~ 64 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-----SSAGKPLSD------V---HPHLRGL----VDLVLEPLDPE 64 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-----cccCcchHH------h---Ccccccc----cCceeecCCHH
Confidence 68999996 99999999999886 7899999884 222211111 0 0001100 01111111121
Q ss_pred cccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCC
Q 006671 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC 535 (636)
Q Consensus 495 l~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~ 535 (636)
...++|+++-|. .+..+.+.+..+.+.++++|==++....
T Consensus 65 ~~~~vD~Vf~al-P~~~~~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLAL-PHGVSMDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECC-CcHHHHHHHHHHHhCCCEEEECCcccCC
Confidence 224799998866 4567788888877778777755544444
No 244
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=85.65 E-value=8.7 Score=40.76 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=77.4
Q ss_pred cEEEEecC-ccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC-C
Q 006671 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA-K 493 (636)
Q Consensus 417 krVaIqGf-GNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~-e 493 (636)
.+|+|.|+ |.+|+.+++.+.+. +..+++..|+.+... .|-|..++. ..+.+ +. .+.++ .
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~--~g~d~ge~~-------g~~~~--------gv-~v~~~~~ 64 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLS--LGSDAGELA-------GLGLL--------GV-PVTDDLL 64 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccc--cccchhhhc-------ccccc--------Cc-eeecchh
Confidence 57999997 99999999999875 589999999866432 244443320 00111 11 22222 2
Q ss_pred ccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHH----HHCCceEeccccc
Q 006671 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKANVLIAPAMAA 556 (636)
Q Consensus 494 il~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL----~~rGIlviPD~~a 556 (636)
+-..++||+|--+.. +.+.++++...+++.++|++-- .+|++-.+.| ++-+|++.|.+..
T Consensus 65 ~~~~~~DV~IDFT~P-~~~~~~l~~~~~~~~~lVIGTT--Gf~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 65 LVKADADVLIDFTTP-EATLENLEFALEHGKPLVIGTT--GFTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred hcccCCCEEEECCCc-hhhHHHHHHHHHcCCCeEEECC--CCCHHHHHHHHHHHhhCCEEEeccchH
Confidence 345689999987766 5577888877788888887542 3555554444 3446777777643
No 245
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=85.61 E-value=1.1 Score=48.72 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaV 445 (636)
.|+|++|.|.|+|++|...|+.|.+.|.+|+..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~ 46 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVG 46 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEE
Confidence 578999999999999999999999999986543
No 246
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.52 E-value=1 Score=48.92 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
.|++++|+|.|.|.+|.++|+.|...|..-++|.|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5788999999999999999999999998768888864
No 247
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.52 E-value=6.9 Score=40.81 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=25.8
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+|.|.|.|++|+.+|..|.+.|.+|+ +.|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~-~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVY-GVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEE-EEEC
Confidence 79999999999999999999998854 4454
No 248
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=85.25 E-value=3.1 Score=45.39 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=29.6
Q ss_pred hCCCCCCcEEEEecCccHHHHHHHHHHHCCCEE
Q 006671 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIP 442 (636)
Q Consensus 410 ~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkV 442 (636)
++.++.||||.|.|+|..|+..|+.|...|..+
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i 188 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVI 188 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhcccee
Confidence 367899999999999999999999999999444
No 249
>PRK05717 oxidoreductase; Validated
Probab=85.07 E-value=1.5 Score=44.07 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 411 g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
..+++|++++|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 3578999999998 6999999999999999997655
No 250
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.83 E-value=1.4 Score=49.21 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=33.7
Q ss_pred HhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 409 DMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 409 ~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+.+.++.+++|+|.|.|..|..+|+.|.+.|.+ |.++|.
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~ 47 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDD 47 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 445677899999999999999999999999999 566774
No 251
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.76 E-value=1.3 Score=48.72 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++|+++.|.|.|..|..+|+.|.+.|++ |.++|.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~ 36 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDG 36 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcC
Confidence 46899999999999999999999999999 566785
No 252
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.67 E-value=1.2 Score=45.21 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=32.6
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|..++|+|.|.|-+|.++|+.|...|..-+.+.|.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 467889999999999999999999999877888875
No 253
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=84.52 E-value=7.7 Score=42.53 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=39.2
Q ss_pred cEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l 476 (636)
.||+|=|||-+|+.+.+.+.+. +..||+|-|. ..|.+.+..|+++-...|++
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~--------~~~~~~~ayll~yDS~hG~~ 55 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA--------SVSIAYIAYVLEQESPLSAP 55 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCC
Confidence 4899999999999999997764 6899999874 13566666666665555655
No 254
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=84.42 E-value=24 Score=40.87 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCChhHHHHHHHHhhhhhCCCCccccCcccccCCCCCCCCcchhHHHHHH
Q 006671 324 DNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFA 403 (636)
Q Consensus 324 ~~El~r~~r~f~~eL~~~IGp~~DVpA~DiGt~~rem~~m~~~y~~l~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~ 403 (636)
..|--.|...||.+..+-.||..-|-=.|++..-.-. +.+.|+.-...+ .. --.-||-=+..++
T Consensus 234 g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfr--lL~kYr~~~c~F----ND----------DIQGTaaValAgl 297 (582)
T KOG1257|consen 234 GKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFR--LLEKYRNKYCMF----ND----------DIQGTAAVALAGL 297 (582)
T ss_pred ccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHH--HHHHhcccccee----cc----------cccchhHHHHHHH
Confidence 4456678999999999999999999999998743221 334454322111 11 1123555555677
Q ss_pred HHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHH----CCC------EEEEEeCCCCceeCCC--CCCHHHHHHHHHHHh
Q 006671 404 QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDED--GFDYMKISFLRDIKS 471 (636)
Q Consensus 404 ~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e----~GA------kVVaVSDs~G~Iydpd--GLDve~L~~L~~~k~ 471 (636)
-.+++..+..|+.-++.+.|.|..|...|+.+.. .|. |=+-+.|++|-|.... .++..+.
T Consensus 298 laa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~-------- 369 (582)
T KOG1257|consen 298 LAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKK-------- 369 (582)
T ss_pred HHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChhhc--------
Confidence 7777878899999999999999999999877643 453 2245566665554332 2222211
Q ss_pred hcCCccccccccCCceeeCCCC-ccccccceEecCCC-cCccchhhHHHhhhcCceEEEeCCCCC
Q 006671 472 QQRSLRDYSKTYARSKYYDEAK-PWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNMP 534 (636)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~e-il~~~cDIliPcA~-~n~It~enA~~l~~~~akiVvEgAN~P 534 (636)
.|++..+..+ +-.+ +-.++..|||=|+. .+..|++-.+.+.++..+=|+=+=-+|
T Consensus 370 ------~fAk~~~~~~--~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNP 426 (582)
T KOG1257|consen 370 ------PFAKDHEEIK--DLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNP 426 (582)
T ss_pred ------cccccChHHH--HHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCC
Confidence 1111110000 0011 12467788888775 677788877777665554443343445
No 255
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.37 E-value=11 Score=40.88 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+.+|+|.|.|.+|..++..+...|+..|.++|.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~ 201 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDR 201 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 3339999999999999999999999988888886
No 256
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.37 E-value=2.5 Score=46.35 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+.+++|+|.|+|.+|..+++.|..+|++ |.+.|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEEC
Confidence 5678899999999999999999999998 566675
No 257
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.34 E-value=1.4 Score=48.56 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++++++|+|.|.|.+|..+|+.|.+.|+.| .++|.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V-~~~d~ 36 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKV-ILTDE 36 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC
Confidence 578999999999999999999999999995 56665
No 258
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=84.04 E-value=1.4 Score=43.58 Aligned_cols=35 Identities=26% Similarity=0.144 Sum_probs=27.8
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
|++|+|+|.|+|+-|..-|..|.+.|..| .|....
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V-~Vglr~ 36 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNV-IVGLRE 36 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EE-EEEE-T
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCE-EEEecC
Confidence 57999999999999999999999999985 455543
No 259
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=83.90 E-value=1.8 Score=42.65 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+++++|+|.| .|.+|.++++.|.+.|++|+.++-
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999998 799999999999999999776654
No 260
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=83.83 E-value=2.5 Score=45.96 Aligned_cols=101 Identities=15% Similarity=0.229 Sum_probs=60.3
Q ss_pred cEEEEecC-ccHHHHHHHHHHHC-CCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCcee--eCCC
Q 006671 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKY--YDEA 492 (636)
Q Consensus 417 krVaIqGf-GNVG~~aAe~L~e~-GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~--i~~~ 492 (636)
++|+|.|. |-||+.+++.|.+. +.+++++.+++. ..|-.+.+ . ...+... ....+ .+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~----sagk~~~~------~---~~~l~~~----~~~~~~~~~~~ 63 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE----SAGKPVSE------V---HPHLRGL----VDLNLEPIDEE 63 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch----hcCCChHH------h---Ccccccc----CCceeecCCHH
Confidence 47999997 99999999999986 788887866531 12211111 0 0101100 01111 1212
Q ss_pred CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCC
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT 536 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T 536 (636)
++.. +||++|-|. .+..+.+-+..+.+.++++|-=++..-..
T Consensus 64 ~~~~-~~DvVf~al-P~~~s~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 64 EIAE-DADVVFLAL-PHGVSAELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred Hhhc-CCCEEEECC-CchHHHHHHHHHHhCCCEEEeCChhhhcC
Confidence 2223 799999877 55678888888877888888655544333
No 261
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.74 E-value=6 Score=41.16 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=26.8
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|.+|...|..|...|..|+ +.|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeC
Confidence 479999999999999999999999854 4565
No 262
>PRK08628 short chain dehydrogenase; Provisional
Probab=83.70 E-value=1.7 Score=43.46 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 411 g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+.+++|++++|.| .|-+|..+|+.|.+.|++|+.++
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~ 38 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG 38 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence 4579999999998 68999999999999999976653
No 263
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.63 E-value=4.1 Score=42.62 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=65.2
Q ss_pred cEEEEecCccHHHHHHHHHHHCC----CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~G----AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (636)
.+|.|.|+|++|..++..|.+.| .+|+.++.+. .+.+..+ .. . ++..+..++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~----------~~~~~~l---~~------~----~~~~~~~~~~ 58 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK----------NEHFNQL---YD------K----YPTVELADNE 58 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc----------HHHHHHH---HH------H----cCCeEEeCCH
Confidence 37999999999999999999988 4655544321 1111111 11 1 1122221211
Q ss_pred CccccccceEecCCCcCccchhhHHHhh---hcCceEEEeCCCCCCCHHHHHHHHHCC-ceEecccccccc
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSNMPCTPEAVDVLKKAN-VLIAPAMAAGAG 559 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l~---~~~akiVvEgAN~P~T~eA~~iL~~rG-IlviPD~~aNAG 559 (636)
.-+..+||++|-|.....+. +-+..+. ..++ +|+--+|+-...+-.+.|-... |.++|-..+-.|
T Consensus 59 ~e~~~~aDvVilavpp~~~~-~vl~~l~~~l~~~~-~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g 127 (277)
T PRK06928 59 AEIFTKCDHSFICVPPLAVL-PLLKDCAPVLTPDR-HVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVG 127 (277)
T ss_pred HHHHhhCCEEEEecCHHHHH-HHHHHHHhhcCCCC-EEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHh
Confidence 11234899999887754432 3333331 2344 4555777755556666664323 467887665554
No 264
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.39 E-value=1.9 Score=45.07 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=27.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|++|..+|..|...|..| .+.|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V-~l~d~ 35 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDV-LLNDV 35 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeE-EEEeC
Confidence 58999999999999999999999985 45565
No 265
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.24 E-value=8.7 Score=41.35 Aligned_cols=115 Identities=20% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeC-CC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~-~~ 492 (636)
.-+++.|.|.|+.|++-++.|.. ...+-|.|.|. +.++...+.+.-. ++. ......+ .+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------~~~~~~~~~~~~~------~~g---~~v~~~~~~~ 187 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------TPSTREKFALRAS------DYE---VPVRAATDPR 187 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------CHHHHHHHHHHHH------hhC---CcEEEeCCHH
Confidence 35789999999999987777755 33444666665 3333322222111 110 0112222 22
Q ss_pred CccccccceEecCCCcC--ccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEeccc
Q 006671 493 KPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAM 554 (636)
Q Consensus 493 eil~~~cDIliPcA~~n--~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~ 554 (636)
+.. .+|||++-|.... .++.+. ++-++.+++=|++.|-..|.+..+.++.- ++-|-
T Consensus 188 eav-~~aDiVitaT~s~~P~~~~~~----l~~g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD~ 245 (325)
T TIGR02371 188 EAV-EGCDILVTTTPSRKPVVKADW----VSEGTHINAIGADAPGKQELDPEILKNAK-IFVDD 245 (325)
T ss_pred HHh-ccCCEEEEecCCCCcEecHHH----cCCCCEEEecCCCCcccccCCHHHHhcCc-EEECC
Confidence 333 4899999877542 233332 35599999999999977676544444443 33454
No 266
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.16 E-value=6.6 Score=43.98 Aligned_cols=115 Identities=20% Similarity=0.319 Sum_probs=65.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC---------CCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCce
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA---------KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSK 487 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs---------~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~ 487 (636)
.|++|.|+|-||.-+|-.+...|.+|+++ |. +|..|=.+ .+.+++ +++. .+.|.| +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~--v~~~-v~~g~l----------r 74 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEV--VKEA-VESGKL----------R 74 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHH--HHHH-HhcCCc----------e
Confidence 79999999999999999999999999876 32 12221111 111111 1111 111212 1
Q ss_pred eeCCCCccccccceEecCCCcCccc---------hhhHHHh---hhcCceEEEeCCCCC-CCHHHHHHH-HHCC
Q 006671 488 YYDEAKPWNERCDVAFPCASQNEID---------QSDAINL---VNSGCRILVEGSNMP-CTPEAVDVL-KKAN 547 (636)
Q Consensus 488 ~i~~~eil~~~cDIliPcA~~n~It---------~enA~~l---~~~~akiVvEgAN~P-~T~eA~~iL-~~rG 547 (636)
..++-+-+. +||+++=|-..-.-. ...|+.| .+.|.-+|.|..=-| +|.+-..-| +++.
T Consensus 75 aTtd~~~l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~s 147 (436)
T COG0677 75 ATTDPEELK-ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERS 147 (436)
T ss_pred EecChhhcc-cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcC
Confidence 112212233 899997665432211 1122222 356899999999888 777765544 4434
No 267
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.99 E-value=8.6 Score=45.10 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=66.2
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~ 496 (636)
.+|+|.|+|.+|+.+++.|.+.|..++. .|. |.+.++.+. +. + ..-| |.++ +..+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvv-ID~----------d~~~v~~~~---~~-g-~~v~---~GDa---t~~~~L~ 458 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTV-LDH----------DPDHIETLR---KF-G-MKVF---YGDA---TRMDLLE 458 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEE-EEC----------CHHHHHHHH---hc-C-CeEE---EEeC---CCHHHHH
Confidence 6899999999999999999999998654 465 333332221 11 1 1111 1111 1122331
Q ss_pred ----cccceEecCCCcCccchhhHHHhh--hcCceEEEeCCCCCCCHHHHHHHHHCCceEe-cccc
Q 006671 497 ----ERCDVAFPCASQNEIDQSDAINLV--NSGCRILVEGSNMPCTPEAVDVLKKANVLIA-PAMA 555 (636)
Q Consensus 497 ----~~cDIliPcA~~n~It~enA~~l~--~~~akiVvEgAN~P~T~eA~~iL~~rGIlvi-PD~~ 555 (636)
.++|.++-|.-..+.|..-+..+. .-..++|+-.. +++..+.|++.|+..+ |...
T Consensus 459 ~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 459 SAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred hcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEEehhhH
Confidence 278888877755444443332221 12467887553 4577788999998754 4443
No 268
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=82.90 E-value=4.8 Score=41.34 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=26.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++++|.|.||+|..+|+.|...|..|+ |+.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecC
Confidence 578999999999999999999999965 4433
No 269
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=82.85 E-value=2 Score=49.12 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=27.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|.|.|.|.+|...|..|...|..| .+-|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V-~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTV-LLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 58999999999999999999999984 56776
No 270
>PRK12828 short chain dehydrogenase; Provisional
Probab=82.80 E-value=2.1 Score=41.76 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.++|+++.|.| .|-+|+.+++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence 47899999998 59999999999999999965553
No 271
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.74 E-value=3.1 Score=40.83 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=27.8
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+|.|.|.|-+|..+++.|...|..=+.+.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 5899999999999999999999876777776
No 272
>PLN02712 arogenate dehydrogenase
Probab=82.71 E-value=1.9 Score=50.97 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=32.3
Q ss_pred hCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 410 ~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+.++++++|.|+|+|++|+.+|+.|.+.|..|+++.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~d 399 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYS 399 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEE
Confidence 4567899999999999999999999999999876543
No 273
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.49 E-value=2.1 Score=42.84 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=30.4
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++||+++|.| .|.+|..+|+.|.+.|++|+. .+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~-~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVIL-NGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEE-EeC
Confidence 57899999998 599999999999999999654 454
No 274
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.37 E-value=1.7 Score=48.86 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+.|++|+|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~ 39 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLF 39 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcC
Confidence 5789999999999999999999999999 577886
No 275
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.37 E-value=1.8 Score=49.49 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|.|+|.|.+|...|..|...|..| .+-|.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V-~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQV-LLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 57999999999999999999999985 56675
No 276
>PLN02858 fructose-bisphosphate aldolase
Probab=82.25 E-value=4.6 Score=51.62 Aligned_cols=111 Identities=9% Similarity=0.061 Sum_probs=65.1
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCc
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (636)
..++|.++|+|++|...|+.|.+.|..| .+-|. +.++...+. +. ++...+.-.-
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v-~v~dr----------~~~~~~~l~---~~------------Ga~~~~s~~e 56 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKV-QAFEI----------STPLMEKFC---EL------------GGHRCDSPAE 56 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeE-EEEcC----------CHHHHHHHH---Hc------------CCeecCCHHH
Confidence 3578999999999999999999999985 45554 233332221 11 2222221111
Q ss_pred cccccceEecCCCcCccchhhH---HHhhh---cCceEEEeCCCCC-CCHHHHHHHHHCC--ceEe
Q 006671 495 WNERCDVAFPCASQNEIDQSDA---INLVN---SGCRILVEGSNMP-CTPEAVDVLKKAN--VLIA 551 (636)
Q Consensus 495 l~~~cDIliPcA~~n~It~enA---~~l~~---~~akiVvEgAN~P-~T~eA~~iL~~rG--Ilvi 551 (636)
+...||++|-|-.......+-. ..+.. .+.-+|-.+...| ++.+..+.+.++| +.|+
T Consensus 57 ~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l 122 (1378)
T PLN02858 57 AAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV 122 (1378)
T ss_pred HHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 2347999998876543322221 11211 2333444444566 5667778899999 8776
No 277
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=82.18 E-value=2.2 Score=42.36 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|++++|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999995 8999999999999999977664
No 278
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.16 E-value=2 Score=45.35 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=27.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|.+|...|..|...|.. |.+-|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~ 36 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFET 36 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEEC
Confidence 3899999999999999999999998 566665
No 279
>PRK06138 short chain dehydrogenase; Provisional
Probab=81.93 E-value=2.3 Score=42.11 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|++++|.| .|-+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 57899999998 59999999999999999976664
No 280
>PRK07060 short chain dehydrogenase; Provisional
Probab=81.92 E-value=2.4 Score=41.75 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
.++++++++|.|. |.+|.++++.|.+.|++|+.++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 4678999999996 8999999999999999976554
No 281
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.85 E-value=24 Score=36.98 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCE-EEEEe
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVS 446 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAk-VVaVS 446 (636)
..|.+|+|.|.|.||..+++.+...|++ |++++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~ 195 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVD 195 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 3589999999999999999999999999 76653
No 282
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.77 E-value=5.8 Score=45.53 Aligned_cols=108 Identities=13% Similarity=0.144 Sum_probs=59.4
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCcc-
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW- 495 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil- 495 (636)
-+++|.|+|++|+.+++.|.+.|..++ +.|. |.++++.+ ++. + ..-+ +.++ ++.+.|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~----------d~~~~~~~---~~~-g-~~~i---~GD~---~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIET----------SRTRVDEL---RER-G-IRAV---LGNA---ANEEIMQ 475 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEEC----------CHHHHHHH---HHC-C-CeEE---EcCC---CCHHHHH
Confidence 468999999999999999999999864 4454 33333222 211 1 1000 0111 112222
Q ss_pred ---ccccceEecCCCcCccch---hhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEe
Q 006671 496 ---NERCDVAFPCASQNEIDQ---SDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIA 551 (636)
Q Consensus 496 ---~~~cDIliPcA~~n~It~---enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlvi 551 (636)
-.+||.++=+...+.-+. ..+.+. ...+++|+-.. +++..+.|++.|+-++
T Consensus 476 ~a~i~~a~~viv~~~~~~~~~~iv~~~~~~-~~~~~iiar~~----~~~~~~~l~~~Gad~v 532 (558)
T PRK10669 476 LAHLDCARWLLLTIPNGYEAGEIVASAREK-RPDIEIIARAH----YDDEVAYITERGANQV 532 (558)
T ss_pred hcCccccCEEEEEcCChHHHHHHHHHHHHH-CCCCeEEEEEC----CHHHHHHHHHcCCCEE
Confidence 137787665544432221 112221 22578887643 4677888888886443
No 283
>PRK08328 hypothetical protein; Provisional
Probab=81.64 E-value=1.7 Score=44.45 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=66.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (636)
.|++++|+|.|.|-+|..+++.|...|..=+.+.|. |=++...|.+- ..-....+.. .+.++ ....
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~-------D~ve~sNL~Rq--~l~~~~dvG~----~~k~~-~a~~ 89 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE-------QTPELSNLNRQ--ILHWEEDLGK----NPKPL-SAKW 89 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------CccChhhhccc--cccChhhcCc----hHHHH-HHHH
Confidence 367889999999999999999999999876777764 22332222100 0000000000 00000 0000
Q ss_pred CccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHH-HHHHHHCCceEe
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEA-VDVLKKANVLIA 551 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA-~~iL~~rGIlvi 551 (636)
.+.....||-+-+- ...++++++..+++ ++.+|+.+.-.+.|... .+...+.||.++
T Consensus 90 ~l~~~np~v~v~~~-~~~~~~~~~~~~l~-~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 90 KLERFNSDIKIETF-VGRLSEENIDEVLK-GVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred HHHHhCCCCEEEEE-eccCCHHHHHHHHh-cCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 11222234444432 23456777766543 68888887755544433 345578888776
No 284
>PRK06841 short chain dehydrogenase; Provisional
Probab=81.39 E-value=2.6 Score=42.04 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.5
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++|++++|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 357899999998 69999999999999999976554
No 285
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.38 E-value=1.9 Score=43.27 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
.|+.++|.|.|.|-+|..+|+.|...|..-+.+.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4678899999999999999999999998657777763
No 286
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=81.35 E-value=2.1 Score=44.11 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=32.2
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..++|++|+|+|-|.||..=++.|.+.||+|.-||-.
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3577999999999999999999999999998766653
No 287
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=81.35 E-value=2.8 Score=42.53 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHH--HHCCCEEEEEeCC
Q 006671 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKL--IAYGAIPVSVSDA 448 (636)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L--~e~GAkVVaVSDs 448 (636)
-||-|-+-.+++.+.+|.+ +-..++|+|.||.|++++.+- .+.|.+|+++-|.
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv 118 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV 118 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecC
Confidence 4677777777776767755 345799999999999998543 4679999999998
No 288
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=81.18 E-value=3 Score=40.81 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=31.1
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++++++++|.| .|.+|+++++.|.+.|++|+.++..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 56789999998 5999999999999999998776654
No 289
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=80.91 E-value=17 Score=41.40 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 408 ~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++...-|.|||+++.|-..-...++++|.+.|++||.++..
T Consensus 306 ~d~~~~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~ 346 (457)
T CHL00073 306 KDYLDLVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIP 346 (457)
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeC
Confidence 33334579999999998789999999999999999999665
No 290
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.82 E-value=30 Score=36.39 Aligned_cols=119 Identities=10% Similarity=0.091 Sum_probs=65.8
Q ss_pred cEEEEecCccHHHHHHHHHHHCCC---EEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-C
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GA---kVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~ 492 (636)
++|.+.|+||+|+.+++-|.+.|. .-|.++|. +.+.++.+. +. | +.+..++ .
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------~~~~~~~l~---~~------~-----g~~~~~~~~ 58 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------NVSNLKNAS---DK------Y-----GITITTNNN 58 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------CHHHHHHHH---Hh------c-----CcEEeCCcH
Confidence 479999999999999999999884 12455554 223332221 11 1 1222222 2
Q ss_pred CccccccceEecCCCcCccchhhHHHhhh-cC-ceEEEeCCCCCCCHHHHHHHHH--CCceEecccccccccc
Q 006671 493 KPWNERCDVAFPCASQNEIDQSDAINLVN-SG-CRILVEGSNMPCTPEAVDVLKK--ANVLIAPAMAAGAGGV 561 (636)
Q Consensus 493 eil~~~cDIliPcA~~n~It~enA~~l~~-~~-akiVvEgAN~P~T~eA~~iL~~--rGIlviPD~~aNAGGV 561 (636)
++ -.+|||+|-|-....+. +-...|.. .+ -++|+--+-+-....-.+.|.. +=+.++|-..+-.|-=
T Consensus 59 e~-~~~aDiIiLavkP~~~~-~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g 129 (272)
T PRK12491 59 EV-ANSADILILSIKPDLYS-SVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEG 129 (272)
T ss_pred HH-HhhCCEEEEEeChHHHH-HHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCc
Confidence 22 24889999888753332 22233311 12 2466666655444455555532 2356788877655543
No 291
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.74 E-value=2.9 Score=41.32 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++++++++|.| .|.+|..+++.|.+.|++|+.+ +.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~-~r 37 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVT-DR 37 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 47889999998 5999999999999999996554 44
No 292
>PRK06523 short chain dehydrogenase; Provisional
Probab=80.60 E-value=2.8 Score=42.00 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=30.7
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++|++++|.| .|.+|+.+++.|.+.|++|+.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 468899999998 68999999999999999976654
No 293
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.59 E-value=1.8 Score=48.43 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.-+.+++|.|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~~-V~~~D~ 45 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGAK-VTAFDK 45 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCCE-EEEECC
Confidence 346689999999999999999999999998 678996
No 294
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=80.26 E-value=1.7 Score=45.60 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+..+|+|.|.|-||+|+++.|.+-|..=+++.|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 56779999999999999999999999765677664
No 295
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.26 E-value=27 Score=36.92 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=26.7
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|.|.|.|.+|...|..|.+.|.+| .+.|.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V-~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEV-RLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCee-EEEeC
Confidence 47999999999999999999999985 45554
No 296
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.25 E-value=2 Score=46.75 Aligned_cols=49 Identities=27% Similarity=0.255 Sum_probs=36.5
Q ss_pred CCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCC-EEEEE
Q 006671 390 LRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSV 445 (636)
Q Consensus 390 ~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GA-kVVaV 445 (636)
+-.-.||||.+.-+ .. --.|.+|+|-|+|.||..+++-....|| +|++|
T Consensus 174 gCGvsTG~GAa~~~------Ak-v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 174 GCGVSTGYGAAWNT------AK-VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred eccccccchhhhhh------cc-cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 44468999974321 11 2368999999999999999998888887 66655
No 297
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.23 E-value=3.1 Score=40.96 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|++|.|.|. |.+|+++++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 468899999985 8899999999999999977653
No 298
>PLN02858 fructose-bisphosphate aldolase
Probab=80.21 E-value=5.6 Score=50.88 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=62.4
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCc
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (636)
..++|.+.|+|++|...|+.|...|..| .+.|. +.+++..+. .. ++...+...-
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V-~v~dr----------~~~~~~~l~---~~------------Ga~~~~s~~e 376 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSV-CGYDV----------YKPTLVRFE---NA------------GGLAGNSPAE 376 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEE-EEEeC----------CHHHHHHHH---Hc------------CCeecCCHHH
Confidence 4578999999999999999999999985 45554 223322121 11 1221111111
Q ss_pred cccccceEecCCCcC-----ccchh--hHHHhhhcCceEEEeCCCCC-CCHHHHHHHHH--CCceEe
Q 006671 495 WNERCDVAFPCASQN-----EIDQS--DAINLVNSGCRILVEGSNMP-CTPEAVDVLKK--ANVLIA 551 (636)
Q Consensus 495 l~~~cDIliPcA~~n-----~It~e--nA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~--rGIlvi 551 (636)
+...|||++-|-... ++..+ -...+ ..+.-+|-.+...| ++.+..+.+++ +|+.|+
T Consensus 377 ~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l-~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l 442 (1378)
T PLN02858 377 VAKDVDVLVIMVANEVQAENVLFGDLGAVSAL-PAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV 442 (1378)
T ss_pred HHhcCCEEEEecCChHHHHHHHhchhhHHhcC-CCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE
Confidence 234799999776632 22111 11111 22444444444455 45566677888 898876
No 299
>PLN02240 UDP-glucose 4-epimerase
Probab=80.17 E-value=2.8 Score=44.08 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=31.1
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
++++++|+|.| .|.||.++++.|.+.|.+|++++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 57899999998 599999999999999999887753
No 300
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=80.12 E-value=3.1 Score=41.25 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++++++|.| .|.+|+.+|+.|.+.|++|+.+.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 4688999998 6999999999999999998776553
No 301
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.05 E-value=12 Score=39.81 Aligned_cols=33 Identities=21% Similarity=0.081 Sum_probs=26.1
Q ss_pred CCcEEEEecCccHHHHHHHHHHH-CC-CEEEEEeCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIA-YG-AIPVSVSDA 448 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e-~G-AkVVaVSDs 448 (636)
.|.+|+|.|.|.||..++..+.. .| ++|+ ++|.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi-~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLV-VFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEE-EEeC
Confidence 58999999999999999998876 55 4554 4454
No 302
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.05 E-value=2.3 Score=47.91 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
++.+++|.|.|+|..|..+|++|.+.|++ |.++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~-v~~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGAR-LRVADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEEcCC
Confidence 46789999999999999999999999998 5778874
No 303
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=79.96 E-value=3.1 Score=42.04 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=31.8
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++||+++|.| .+.+|.++|+.|.+.|++|+.++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999998 5899999999999999997766544
No 304
>PRK06823 ornithine cyclodeaminase; Validated
Probab=79.95 E-value=12 Score=40.24 Aligned_cols=149 Identities=15% Similarity=0.064 Sum_probs=81.4
Q ss_pred ccCcccc-c-CCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEecCccHHHHHHHHHHHC-CCEEEEEeCCCCceeC
Q 006671 378 FTGPRIF-W-SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVD 454 (636)
Q Consensus 378 vTGKp~~-~-GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~-GAkVVaVSDs~G~Iyd 454 (636)
-||.|.. + .|.....--||-.-..+++.+.+ -.-++++|.|.|..|++-++.+... ..+=|-| |+
T Consensus 93 ~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~-----~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v-------~~ 160 (315)
T PRK06823 93 KTGEPQALLLDEGWLTALRTALAGRIVARLLAP-----QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWV-------WG 160 (315)
T ss_pred CCCceEEEEcCCChHHHHHHHHHHHHHHHHhcC-----CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEE-------EC
Confidence 4777776 3 45443223344444444554432 1457999999999999999888763 3333444 44
Q ss_pred CCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccccccceEecCCC--cCccchhhHHHhhhcCceEEEeCCC
Q 006671 455 EDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS--QNEIDQSDAINLVNSGCRILVEGSN 532 (636)
Q Consensus 455 pdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPcA~--~n~It~enA~~l~~~~akiVvEgAN 532 (636)
.+ .++...+.+.....+ + .....+..+-.-.++||++-|+. +-.++.+. ++-++.+++=|++
T Consensus 161 r~---~~~a~~~~~~~~~~~----~-----~v~~~~~~~~av~~ADIV~taT~s~~P~~~~~~----l~~G~hi~~iGs~ 224 (315)
T PRK06823 161 RS---ETALEEYRQYAQALG----F-----AVNTTLDAAEVAHAANLIVTTTPSREPLLQAED----IQPGTHITAVGAD 224 (315)
T ss_pred CC---HHHHHHHHHHHHhcC----C-----cEEEECCHHHHhcCCCEEEEecCCCCceeCHHH----cCCCcEEEecCCC
Confidence 33 333332322211110 1 12222221112258999997654 33444443 2459999999999
Q ss_pred CCCCHHHHHHHHHCCceEeccc
Q 006671 533 MPCTPEAVDVLKKANVLIAPAM 554 (636)
Q Consensus 533 ~P~T~eA~~iL~~rGIlviPD~ 554 (636)
.|-..|.+..+-++.-.|+-|.
T Consensus 225 ~p~~~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 225 SPGKQELDAELVARADKILVDS 246 (315)
T ss_pred CcccccCCHHHHhhCCEEEECC
Confidence 9987777654544443233354
No 305
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=79.80 E-value=4.5 Score=44.05 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=30.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+.+.=|+|+|.|-||+|++-.|.+.|..=+-|.|
T Consensus 71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEec
Confidence 46788899999999999999999999985566666
No 306
>PRK06153 hypothetical protein; Provisional
Probab=79.70 E-value=1.3 Score=49.23 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|++++|+|+|.|-+|+++++.|.+.|..=+.+.|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 467889999999999999999999999866777774
No 307
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=79.63 E-value=5 Score=43.11 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
-.|.+|+|.|.|.||..+++.+..+|++|++++++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36899999999999999999999999998776554
No 308
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.63 E-value=7.2 Score=40.25 Aligned_cols=95 Identities=15% Similarity=0.248 Sum_probs=62.0
Q ss_pred ccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccccccceEec
Q 006671 425 GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFP 504 (636)
Q Consensus 425 GNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliP 504 (636)
-..+..+++.|.+.|.+++=|+=. .|+.++. +..++. .|.++|| |+++=
T Consensus 26 ~~~a~~~~~al~~gGi~~iEiT~~-----tp~a~~~-----i~~l~~------~~~~~~p---------------~~~vG 74 (222)
T PRK07114 26 VEVAKKVIKACYDGGARVFEFTNR-----GDFAHEV-----FAELVK------YAAKELP---------------GMILG 74 (222)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCC-----CCcHHHH-----HHHHHH------HHHhhCC---------------CeEEe
Confidence 455667788888888888888765 4555431 222111 1111122 33332
Q ss_pred CCCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCceEeccccc
Q 006671 505 CASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAA 556 (636)
Q Consensus 505 cA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGIlviPD~~a 556 (636)
-+.++|.+.++..++.||++|+ .| ++++-.+..+++||.++|+...
T Consensus 75 --aGTVl~~e~a~~a~~aGA~FiV----sP~~~~~v~~~~~~~~i~~iPG~~T 121 (222)
T PRK07114 75 --VGSIVDAATAALYIQLGANFIV----TPLFNPDIAKVCNRRKVPYSPGCGS 121 (222)
T ss_pred --eEeCcCHHHHHHHHHcCCCEEE----CCCCCHHHHHHHHHcCCCEeCCCCC
Confidence 2567888888888888999887 34 6778888888889999987653
No 309
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.63 E-value=2.5 Score=47.08 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|++|.|.|+|.-|..+|++|.++|++ |.++|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~-v~~~D~ 40 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAE-VIAWDD 40 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEECC
Confidence 6789999999999999999999999998 688996
No 310
>PRK08703 short chain dehydrogenase; Provisional
Probab=79.58 E-value=3.4 Score=40.94 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 59999999999999999966553
No 311
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=79.58 E-value=10 Score=43.00 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=31.6
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++.+++|+|.|+|.-|..+++.|.+.|++ |.++|.
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~-v~v~D~ 38 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAE-VTVSDD 38 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCe-EEEEcC
Confidence 34589999999999999999999999998 678886
No 312
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=79.40 E-value=2.3 Score=43.13 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|+.++|+|.|.|-+|..+|+.|...|..=+.+.|.
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~ 60 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDF 60 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 467889999999999999999999999876778775
No 313
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=79.35 E-value=2.3 Score=46.24 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|+.++|+|.|.|-+|..+|+.|...|..-+.+.|.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 467899999999999999999999999866788876
No 314
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.30 E-value=6.5 Score=37.55 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.7
Q ss_pred EEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 418 rVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+|+|.|.||.|..+|..|.+.|.. |.+-+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~ 30 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHE-VTLWGR 30 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEE-EEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCE-EEEEec
Confidence 589999999999999999999977 455544
No 315
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.27 E-value=2.5 Score=41.92 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.1
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaV 445 (636)
++|+|.|.|-||.-+|-.|++.|.+|+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE
Confidence 58999999999999999999999997665
No 316
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=79.17 E-value=2.2 Score=42.70 Aligned_cols=36 Identities=17% Similarity=0.482 Sum_probs=32.2
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
|+..+|.|.|.|.+|..+++.|...|..=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567899999999999999999999999878888753
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.13 E-value=32 Score=33.80 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 408 ~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.....-..|.+|+|.|.|.+|+.+++.+...|++|++++.+
T Consensus 127 ~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~ 167 (271)
T cd05188 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRS 167 (271)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence 33333347889999999889999999999999998776543
No 318
>PRK06172 short chain dehydrogenase; Provisional
Probab=79.12 E-value=3.5 Score=41.16 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.++++++++|.| .|.+|.++|+.|.+.|++|+.+ +.
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~-~r 39 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVA-DR 39 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 357899999998 6899999999999999996655 44
No 319
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.00 E-value=3.6 Score=40.61 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=30.0
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++|+++.|.|. |.+|..+++.|.+.|++|+.+ |.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~-~r 37 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALI-DL 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 478999999996 999999999999999996554 44
No 320
>PRK06125 short chain dehydrogenase; Provisional
Probab=78.99 E-value=3.6 Score=41.36 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++|++++|.|. |.+|..+|+.|.+.|++|+.++
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~ 38 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVA 38 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 4578999999985 7899999999999999866553
No 321
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.84 E-value=3.4 Score=41.18 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaV 445 (636)
+++|++++|.|. |.+|.++++.|.+.|+.|+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 467999999985 999999999999999997655
No 322
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.75 E-value=4 Score=40.47 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=30.0
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+++++++|.| .|.+|+++|+.|.+.|++|+.+.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 46788999988 799999999999999999876544
No 323
>PRK04148 hypothetical protein; Provisional
Probab=78.73 E-value=3.8 Score=39.22 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.++++|+++|.| -|..+|+.|.+.|..|+ ..|.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Vi-aIDi 47 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVI-VIDI 47 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEE-EEEC
Confidence 467899999999 88889999999999965 4565
No 324
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.69 E-value=3.6 Score=40.77 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=29.1
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaV 445 (636)
.++|++++|.|. |-+|.++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 468899999985 999999999999999997665
No 325
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.61 E-value=3.3 Score=43.26 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=26.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|.+|..+|..|.+.|..| .+.|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V-~l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDV-TIYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeE-EEEeC
Confidence 48999999999999999999999984 45554
No 326
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=78.55 E-value=3.7 Score=44.42 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=56.0
Q ss_pred cEEEEec-CccHHHHHHHHHHHCC-CEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCC-C
Q 006671 417 LRCVVSG-SGKIAMHVLEKLIAYG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA-K 493 (636)
Q Consensus 417 krVaIqG-fGNVG~~aAe~L~e~G-AkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~-e 493 (636)
.+|+|.| .|-+|+.+++.|.+.. ..++++.++... .|-++.++ ..+.. .+.+... +....+.+.+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~----~g~~~~~~---~~~~~-~~~~~~~---~~~~~~~~~~~~ 69 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRS----AGKRYGEA---VKWIE-PGDMPEY---VRDLPIVEPEPV 69 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhh----cCCcchhh---ccccc-cCCCccc---cceeEEEeCCHH
Confidence 3799999 5999999999998876 699999776321 22222111 00000 0000000 0011111111 1
Q ss_pred ccccccceEecCCCcCccchhhHHHhhhcCceEEEeC
Q 006671 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEG 530 (636)
Q Consensus 494 il~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEg 530 (636)
.+ .++|+++.|+..+ ++.+.+..+.+.||++|.=+
T Consensus 70 ~~-~~~DvVf~a~p~~-~s~~~~~~~~~~G~~VIDls 104 (341)
T TIGR00978 70 AS-KDVDIVFSALPSE-VAEEVEPKLAEAGKPVFSNA 104 (341)
T ss_pred Hh-ccCCEEEEeCCHH-HHHHHHHHHHHCCCEEEECC
Confidence 23 4789888877555 66666676666788877644
No 327
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.54 E-value=3.5 Score=40.87 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.9
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++++|+|.| .|.+|.++|+.|.+.|++|+.+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 5688999998 79999999999999999976653
No 328
>PRK12742 oxidoreductase; Provisional
Probab=78.51 E-value=3.9 Score=40.18 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.++|++++|.| .|.+|+.+|+.|.+.|++|+.+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 47899999998 59999999999999999976553
No 329
>PRK09072 short chain dehydrogenase; Provisional
Probab=78.35 E-value=3.8 Score=41.33 Aligned_cols=34 Identities=38% Similarity=0.488 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++++|.| .|-+|..+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 56789999998 69999999999999999976554
No 330
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=78.32 E-value=3.4 Score=41.56 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
+++|++++|.| .|.+|..+|+.|.+.|++|+.+
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 58899999998 5789999999999999998866
No 331
>PRK12829 short chain dehydrogenase; Provisional
Probab=78.17 E-value=3.6 Score=41.01 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=29.4
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.++++++.|.| .|.+|+++++.|.+.|++|+.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 47889999998 69999999999999999965544
No 332
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.08 E-value=3.3 Score=45.86 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++.++++.|.|.|..|..+|++|.+.|++| .++|.
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v-~~~d~ 36 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEV-AAYDA 36 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC
Confidence 367899999999999999999999999995 56775
No 333
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.01 E-value=3.8 Score=40.34 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|++++|.| .|.+|.++++.|.+.|++|+.+.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~ 36 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVD 36 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 68999999999999999976553
No 334
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=77.92 E-value=3.8 Score=41.32 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
++++++++|.| .|.+|..+|+.|.+.|++|+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 46889999998 5889999999999999997655
No 335
>PRK09186 flagellin modification protein A; Provisional
Probab=77.84 E-value=3.6 Score=40.93 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=28.6
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
++|++|+|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 5789999998 5899999999999999997666
No 336
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=77.48 E-value=3.5 Score=41.03 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~ 43 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLG 43 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEe
Confidence 46899999997 69999999999999999976543
No 337
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=77.41 E-value=4.1 Score=40.71 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++|++++|.| .|.+|+.+++.|.+.|++|+.++
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~ 42 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNG 42 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 458899999998 58999999999999999976553
No 338
>PRK06197 short chain dehydrogenase; Provisional
Probab=77.27 E-value=3.8 Score=42.58 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=31.5
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+++|++|+|.| .|-+|.++|+.|.+.|++|+.++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 367899999998 599999999999999999877654
No 339
>PRK10637 cysG siroheme synthase; Provisional
Probab=77.23 E-value=3 Score=46.96 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006671 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+|+|++|+|+|-|+||..=++.|.+.|++|+-||-
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 478999999999999999999999999999876654
No 340
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.13 E-value=4 Score=40.65 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++++++|.| .|.+|+.+|+.|.+.|++|+.+ +.
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~-~r 37 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLA-AR 37 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE-eC
Confidence 36789999998 5899999999999999996544 54
No 341
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.08 E-value=13 Score=41.15 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=30.0
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006671 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 412 ~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaV 445 (636)
..++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999985 999999999999999997765
No 342
>PRK06949 short chain dehydrogenase; Provisional
Probab=76.98 E-value=4.3 Score=40.46 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.++++++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 468899999998 59999999999999999976553
No 343
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.98 E-value=4.4 Score=39.62 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=29.0
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++.+++++|.| .|.+|..+++.|.+.|++|+.++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 46788999998 69999999999999999965444
No 344
>PLN02256 arogenate dehydrogenase
Probab=76.88 E-value=5 Score=42.97 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
+-++++|.|.|+|++|+.+|..|.+.|.+|+++..
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~ 67 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSR 67 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEEC
Confidence 34778999999999999999999999988765543
No 345
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=76.76 E-value=3.5 Score=44.78 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=47.3
Q ss_pred EEEEec-CccHHHHHHHHHHHCCCEEEE---E-eC-CCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC
Q 006671 418 RCVVSG-SGKIAMHVLEKLIAYGAIPVS---V-SD-AKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (636)
Q Consensus 418 rVaIqG-fGNVG~~aAe~L~e~GAkVVa---V-SD-s~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~ 491 (636)
+|+|.| .|.||+.++++|.+.+..++. + ++ +.|.-+.-.|.+ . ....++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~-------------------~-----~~~~~~~ 56 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKE-------------------L-----EVNEAKI 56 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCee-------------------E-----EEEeCCh
Confidence 478898 799999999999987664332 2 22 222222111100 0 0000111
Q ss_pred CCccccccceEecCCCcCccchhhHHHhhhcCceEE
Q 006671 492 AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRIL 527 (636)
Q Consensus 492 ~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiV 527 (636)
+.| .+||++|-|+. ...+.+-++++.+.||++|
T Consensus 57 -~~~-~~~D~v~~a~g-~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 57 -ESF-EGIDIALFSAG-GSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred -HHh-cCCCEEEECCC-HHHHHHHHHHHHHCCCEEE
Confidence 123 47888888774 4467777777777777655
No 346
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=76.71 E-value=4.9 Score=40.43 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+++|++++|.| .|.+|.++|+.|.+.|++||.++.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 358899999998 688999999999999999876654
No 347
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=76.64 E-value=5.4 Score=43.19 Aligned_cols=123 Identities=21% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHhCCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHH
Q 006671 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (636)
Q Consensus 386 GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~ 464 (636)
=|.+|-+.-|+|--++ + ....-+|+||.|+| +|.||+-+-++..-.|.+||+++-|+- +..
T Consensus 131 lg~lGm~glTAy~Gf~---e----i~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E-----------Kv~ 192 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAGFY---E----ICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE-----------KVD 192 (343)
T ss_pred hhccCCchhHHHHHHH---H----hcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh-----------hhh
Confidence 3566766777775444 3 33345789999999 699999999998889999999998721 211
Q ss_pred HHHHHHhhcCCccccccccCCceeeCC--CCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCC
Q 006671 465 FLRDIKSQQRSLRDYSKTYARSKYYDE--AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM 533 (636)
Q Consensus 465 ~L~~~k~~~g~l~~y~~~~p~a~~i~~--~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~ 533 (636)
.| +.+.|--..| .|..-..++. .+.+..-.||++.--.++.++.-- ...+...+|++.|+=.
T Consensus 193 ll---~~~~G~d~af--NYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl--~nM~~~gri~~CG~IS 256 (343)
T KOG1196|consen 193 LL---KTKFGFDDAF--NYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVL--LNMNLHGRIAVCGMIS 256 (343)
T ss_pred hh---HhccCCccce--eccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHH--HhhhhccceEeeeeeh
Confidence 11 1111111011 0100000000 113345679999987777665432 1134578999988743
No 348
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.63 E-value=4.5 Score=41.22 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=30.3
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++||+++|.|. |.+|..+|+.|.+.|++|+. .|.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~-~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVIL-LSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEE-EeC
Confidence 4688999999985 78999999999999999654 454
No 349
>PRK06398 aldose dehydrogenase; Validated
Probab=76.60 E-value=4.4 Score=41.02 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|++++|.| .|-+|..+|+.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 57899999998 58899999999999999987654
No 350
>PRK12939 short chain dehydrogenase; Provisional
Probab=76.54 E-value=4.5 Score=39.95 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
++++++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 46789999998 5999999999999999997766
No 351
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=76.51 E-value=7.6 Score=43.27 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCCCcEEEEecC-----------------ccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCC
Q 006671 401 FFAQLILADMNKELKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDG 457 (636)
Q Consensus 401 ~~~~~~l~~~g~~l~GkrVaIqGf-----------------GNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdG 457 (636)
..+...+. ..+++|++|+|.|- |.+|..+|+.|.+.|+.|+.++ ....+-.|.|
T Consensus 175 ~~~~~~~~--~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~-~~~~~~~~~~ 245 (399)
T PRK05579 175 AAAERALS--PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS-GPVNLPTPAG 245 (399)
T ss_pred HHHHHHhh--hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC-CCccccCCCC
Confidence 34444443 25789999999875 8899999999999999976554 3333334444
No 352
>PRK08264 short chain dehydrogenase; Validated
Probab=76.47 E-value=4.3 Score=40.03 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=29.0
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCC-EEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGA-IPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GA-kVVaVS 446 (636)
++.+++++|.| .|.+|.++|+.|.+.|+ +|+.++
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 46789999998 69999999999999999 765554
No 353
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=76.29 E-value=4.5 Score=42.99 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 411 g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
+.+.+++||+|.| .|-+|+++++.|.+.|.+|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567889999999 699999999999999999888765
No 354
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.28 E-value=4.6 Score=40.66 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006671 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 412 ~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaV 445 (636)
.+++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAIC 38 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 4688999999984 789999999999999997654
No 355
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.24 E-value=4.4 Score=40.36 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++++++.|.| .|.+|.++++.|.+.|++|+.++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 79999999999999999977664
No 356
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.19 E-value=3.8 Score=46.41 Aligned_cols=34 Identities=38% Similarity=0.615 Sum_probs=30.5
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+.|++|+|.|+|..|..++++|...|++| .++|.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v-~~~D~ 43 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARP-TVCDD 43 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEE-EEEcC
Confidence 47899999999999999999999999984 56885
No 357
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=76.16 E-value=17 Score=39.11 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=67.0
Q ss_pred CCcEEEEecCccHHHHHHHHHH-HCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCcee--eCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKY--YDE 491 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~-e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~--i~~ 491 (636)
..+++.|.|.|..|.+.++.|. ..+.+-|.|.+. +.++...+.+..... + +.+. .++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------~~~~a~~~a~~~~~~---------~-g~~v~~~~~ 187 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------DSAKAEALALQLSSL---------L-GIDVTAATD 187 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------CHHHHHHHHHHHHhh---------c-CceEEEeCC
Confidence 4679999999999999999987 477676778776 333333232211110 1 1111 111
Q ss_pred -CCccccccceEecCCCcC--ccchhhHHHhhhcCceEEEeCCCCCCCHHHH-HHHHHCCceEeccc
Q 006671 492 -AKPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMPCTPEAV-DVLKKANVLIAPAM 554 (636)
Q Consensus 492 -~eil~~~cDIliPcA~~n--~It~enA~~l~~~~akiVvEgAN~P~T~eA~-~iL~~rGIlviPD~ 554 (636)
++.+ .+|||++=|+... .|+.+. ++.++.+..=|++.|.-.|.+ ++|....+ |+-|.
T Consensus 188 ~~~av-~~aDiVvtaT~s~~p~i~~~~----l~~g~~i~~vg~~~p~~rEld~~~l~~a~~-~vvD~ 248 (326)
T TIGR02992 188 PRAAM-SGADIIVTTTPSETPILHAEW----LEPGQHVTAMGSDAEHKNEIDPAVIAKADH-YVADR 248 (326)
T ss_pred HHHHh-ccCCEEEEecCCCCcEecHHH----cCCCcEEEeeCCCCCCceecCHHHHhccCE-EEcCC
Confidence 1122 3799999887542 344332 355888888899988766654 34444433 44343
No 358
>PRK12937 short chain dehydrogenase; Provisional
Probab=76.14 E-value=5.1 Score=39.49 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++++++++|.| .|.+|+++|+.|.++|++++.+..+
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 56889999998 6999999999999999998766543
No 359
>PRK06057 short chain dehydrogenase; Provisional
Probab=76.11 E-value=4.4 Score=40.65 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=29.4
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaV 445 (636)
.++|++|+|.|. |.+|.++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 478999999995 999999999999999997655
No 360
>PRK07814 short chain dehydrogenase; Provisional
Probab=76.03 E-value=4.5 Score=40.91 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=29.2
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|++++|.| .|-+|.++++.|.+.|++|+.++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 47899999998 56899999999999999976553
No 361
>PRK08291 ectoine utilization protein EutC; Validated
Probab=75.80 E-value=35 Score=36.75 Aligned_cols=119 Identities=16% Similarity=0.089 Sum_probs=68.6
Q ss_pred CCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-C
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~ 492 (636)
..++++|.|.|..|.+.+..|.. .+.+.|.|.+. +.++++.+.+...+...+ .....++ +
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------~~~~a~~l~~~~~~~~g~--------~v~~~~d~~ 192 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------DAAKAEAYAADLRAELGI--------PVTVARDVH 192 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------CHHHHHHHHHHHhhccCc--------eEEEeCCHH
Confidence 45799999999999998888875 57777888776 334433333221111001 0111111 1
Q ss_pred CccccccceEecCCCc--CccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEeccccc
Q 006671 493 KPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAA 556 (636)
Q Consensus 493 eil~~~cDIliPcA~~--n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~a 556 (636)
+.+ .++||++-|+.. -.++.+. ++.++.+.+=|++.|...|.+.-+.++--.|+-|...
T Consensus 193 ~al-~~aDiVi~aT~s~~p~i~~~~----l~~g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~~ 253 (330)
T PRK08291 193 EAV-AGADIIVTTTPSEEPILKAEW----LHPGLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRLS 253 (330)
T ss_pred HHH-ccCCEEEEeeCCCCcEecHHH----cCCCceEEeeCCCCCCcccCCHHHHhhCCEEEeCCHH
Confidence 222 368999877653 3333332 2447788888899887777654444444334445543
No 362
>PRK09135 pteridine reductase; Provisional
Probab=75.73 E-value=4.8 Score=39.58 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=29.6
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
..+++++|.| .|.+|+++++.|.+.|++|+.++-
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 4678999998 699999999999999999877754
No 363
>PRK07806 short chain dehydrogenase; Provisional
Probab=75.51 E-value=5.7 Score=39.42 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
+++|++++|.| .|.+|.++++.|.+.|++|+.++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 47889999998 599999999999999999877654
No 364
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.51 E-value=5.1 Score=39.73 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+.|++++|.| .|.+|+.+++.|.+.|++|+.+.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678999998 5899999999999999998765443
No 365
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.37 E-value=4.3 Score=43.90 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=27.2
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|+|.|.+|...|..+...|..| .+-|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V-~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDV-VAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 58999999999999999999999995 45564
No 366
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=75.22 E-value=4.3 Score=43.06 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=29.4
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++|++|+|.| .|-+|+++++.|.+.|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 4689999998 59999999999999999988765
No 367
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.19 E-value=4 Score=45.92 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+.+++|.|.|+|..|..+|+.|.+.|++ |.++|.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~-V~~~D~ 46 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCD-VVVADD 46 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCE-EEEECC
Confidence 46788999999999999999999999996 778886
No 368
>PRK12746 short chain dehydrogenase; Provisional
Probab=75.15 E-value=5.5 Score=39.65 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
++++++++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 46789999998 7999999999999999997554
No 369
>PRK05875 short chain dehydrogenase; Provisional
Probab=75.10 E-value=5.1 Score=40.58 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++++|.|. |.+|.++++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 478899999995 8999999999999999976654
No 370
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=75.10 E-value=4.9 Score=40.26 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++++++|.| .|.+|.++|+.|.+.|++|+.+ |.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~-~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLV-DR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 57899999998 5899999999999999997644 44
No 371
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.99 E-value=5.9 Score=39.72 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
..++|++++|.| .|-+|..+|+.|.+.|++|+.+..
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 357899999998 699999999999999999876543
No 372
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.97 E-value=5.7 Score=39.31 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++++++++|.| .|-+|+++++.|.+.|++|+.+.++
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999998 6889999999999999997765543
No 373
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.70 E-value=5 Score=41.69 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
.+++|++++|.| .|.+|..+|+.|.+.|++|+.+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~ 39 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALV 39 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 468899999998 5899999999999999996554
No 374
>PRK07478 short chain dehydrogenase; Provisional
Probab=74.68 E-value=5.5 Score=39.85 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++++|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~ 37 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57889999998 58999999999999999976553
No 375
>PRK07576 short chain dehydrogenase; Provisional
Probab=74.67 E-value=5.2 Score=40.68 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++++|.|. |.+|..+++.|.+.|++|+.++
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578999999985 8999999999999999976664
No 376
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=74.61 E-value=59 Score=34.59 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=67.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCC---EEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GA---kVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (636)
+++.+.|+||+|+.++.-|.+.|. .-|.|++. +.+++..+ .. . |+.. ..++..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------~~e~~~~l---~~------~----~g~~-~~~~~~ 57 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------SEEKRAAL---AA------E----YGVV-TTTDNQ 57 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------CHHHHHHH---HH------H----cCCc-ccCcHH
Confidence 478999999999999999999993 45777776 23332111 11 2 2222 222233
Q ss_pred ccccccceEecCCCcCccchhhHHHhh-hcCceEEEeCCCCCCCHHHHHHHH-HCCceEecccccccccce
Q 006671 494 PWNERCDVAFPCASQNEIDQSDAINLV-NSGCRILVEGSNMPCTPEAVDVLK-KANVLIAPAMAAGAGGVV 562 (636)
Q Consensus 494 il~~~cDIliPcA~~n~It~enA~~l~-~~~akiVvEgAN~P~T~eA~~iL~-~rGIlviPD~~aNAGGVi 562 (636)
.+..++|++|-|--...+. +....|. ..+-++|+--|=+-....-.+.|- .+=+.++|...+-.|--.
T Consensus 58 ~~~~~advv~LavKPq~~~-~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~ 127 (266)
T COG0345 58 EAVEEADVVFLAVKPQDLE-EVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGV 127 (266)
T ss_pred HHHhhCCEEEEEeChHhHH-HHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcc
Confidence 4556799999877553332 2233331 123445544443333333444453 333578888777665433
No 377
>PRK07063 short chain dehydrogenase; Provisional
Probab=74.59 E-value=5.2 Score=40.17 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
.+++++++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALA 37 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 47899999998 5899999999999999997654
No 378
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.52 E-value=5.2 Score=40.18 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
+++|++++|.| .|.+|..+|+.|.+.|++|+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999998 5899999999999999997654
No 379
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=74.51 E-value=4.3 Score=42.02 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.3
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEE
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaV 445 (636)
++|+|.|.|+||..+|..|.+.|..|+.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~ 29 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLV 29 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 37999999999999999999999885444
No 380
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=74.48 E-value=8.1 Score=40.90 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=29.3
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..|.+|+|.|.|.||..+++.+...|++.|.++|.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 46899999999999999999999999954445554
No 381
>PRK05867 short chain dehydrogenase; Provisional
Probab=74.47 E-value=5.1 Score=40.15 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.0
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaV 445 (636)
+++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 39 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIA 39 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 578999999985 899999999999999996554
No 382
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=74.43 E-value=8.1 Score=42.17 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCcEEEEec-CccHHHHHHHHHHHCCC
Q 006671 415 KGLRCVVSG-SGKIAMHVLEKLIAYGA 440 (636)
Q Consensus 415 ~GkrVaIqG-fGNVG~~aAe~L~e~GA 440 (636)
...+|+|.| .|.||+.+.++|.+.+.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h 32 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF 32 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC
Confidence 457899998 69999999999998765
No 383
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=74.38 E-value=17 Score=37.57 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=32.1
Q ss_pred CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 411 g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..-..|.+|+|.|.|.+|..+++.+...|++|+.++++
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~ 200 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRS 200 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCC
Confidence 33346789999999999999999999999998877665
No 384
>PRK06196 oxidoreductase; Provisional
Probab=74.38 E-value=5.1 Score=41.93 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 411 g~~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
..+++|++|+|.|. |-+|.++|+.|.+.|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 35678999999985 8899999999999999977654
No 385
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.37 E-value=4.4 Score=42.86 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=28.7
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++|.|.|.|++|..+|..|.+.|..| .+.|+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V-~~~~r 35 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRV-RVWSR 35 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEE-EEEeC
Confidence 4679999999999999999999999986 45554
No 386
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=74.37 E-value=4.1 Score=45.45 Aligned_cols=34 Identities=35% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCCcEEEEecCccHHHH-HHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMH-VLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~-aAe~L~e~GAkVVaVSDs 448 (636)
.++++|.|.|.|..|.. +|++|.+.|++ |.++|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDL 39 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECC
Confidence 46789999999999999 69999999999 678997
No 387
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=74.36 E-value=8.6 Score=39.18 Aligned_cols=90 Identities=20% Similarity=0.291 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccccccceEec
Q 006671 425 GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFP 504 (636)
Q Consensus 425 GNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliP 504 (636)
-..+..+++.|.+.|.+++-|+=. .|+.++. +.++++ .|| |+.+
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~-----t~~a~~~-----i~~l~~----------~~~---------------~~~v- 62 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLR-----TPVALDA-----IRLLRK----------EVP---------------DALI- 62 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC-----CccHHHH-----HHHHHH----------HCC---------------CCEE-
Confidence 445667788888888888877754 4444321 222221 122 2222
Q ss_pred CCCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCceEecccc
Q 006671 505 CASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMA 555 (636)
Q Consensus 505 cA~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGIlviPD~~ 555 (636)
.-+.++|.+.+++.++.||++|+- | ++++..+..+++||.++|+..
T Consensus 63 -GAGTVl~~~~a~~a~~aGA~Fivs----P~~~~~v~~~~~~~~i~~iPG~~ 109 (204)
T TIGR01182 63 -GAGTVLNPEQLRQAVDAGAQFIVS----PGLTPELAKHAQDHGIPIIPGVA 109 (204)
T ss_pred -EEEeCCCHHHHHHHHHcCCCEEEC----CCCCHHHHHHHHHcCCcEECCCC
Confidence 236788999999999999999973 4 578888889999999999543
No 388
>PRK08226 short chain dehydrogenase; Provisional
Probab=74.31 E-value=5.3 Score=40.11 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++++++|.| .|.+|+++|+.|.+.|++|+.++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 36789999997 79999999999999999976553
No 389
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=74.26 E-value=4.8 Score=42.40 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
++++++|.|.| .|-+|+++++.|.+.|.+|+++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 67899999998 599999999999999999887754
No 390
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=74.25 E-value=5.4 Score=40.19 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++++|.| .|.+|..+++.|.+.|++|+.+.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~ 40 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNAD 40 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 69999999999999999976543
No 391
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.21 E-value=9.8 Score=38.73 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCccccccceEecC
Q 006671 426 KIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPC 505 (636)
Q Consensus 426 NVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIliPc 505 (636)
.-+..+++.|.+.|.+++=|+=. .|+.++. +.+++++ || |++|
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~-----tp~a~~~-----I~~l~~~----------~~---------------~~~v-- 58 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLR-----TPAALDA-----IRAVAAE----------VE---------------EAIV-- 58 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC-----CccHHHH-----HHHHHHH----------CC---------------CCEE--
Confidence 34557788888888888888765 4554421 2222111 12 2332
Q ss_pred CCcCccchhhHHHhhhcCceEEEeCCCCC-CCHHHHHHHHHCCceEeccccc
Q 006671 506 ASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAA 556 (636)
Q Consensus 506 A~~n~It~enA~~l~~~~akiVvEgAN~P-~T~eA~~iL~~rGIlviPD~~a 556 (636)
.-+.++|.+.+++.++.||++|+ .| ++++-.+..+++||.++|+...
T Consensus 59 GAGTVl~~e~a~~ai~aGA~Fiv----SP~~~~~vi~~a~~~~i~~iPG~~T 106 (201)
T PRK06015 59 GAGTILNAKQFEDAAKAGSRFIV----SPGTTQELLAAANDSDVPLLPGAAT 106 (201)
T ss_pred eeEeCcCHHHHHHHHHcCCCEEE----CCCCCHHHHHHHHHcCCCEeCCCCC
Confidence 22578889999999999999998 35 6788888999999999998754
No 392
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=74.21 E-value=5.3 Score=40.05 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|+++.|.| .|.+|.++|+.|.+.|++|+.+.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 69999999999999999965543
No 393
>PRK07411 hypothetical protein; Validated
Probab=74.12 E-value=3.6 Score=45.47 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|+..+|.|+|.|-+|..+|+.|...|..=+++.|.
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 356789999999999999999999999877888885
No 394
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=74.10 E-value=3.6 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGA 440 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GA 440 (636)
+..+|+|+|.|-+|.++++.|.+.|.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHH 35 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccc
Confidence 56899999999999999999999863
No 395
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.10 E-value=5.2 Score=40.15 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqGf---GNVG~~aAe~L~e~GAkVVaVS 446 (636)
+++|+++.|.|. |.+|..+|+.|.+.|++|+.++
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 578999999996 4799999999999999976653
No 396
>PRK09242 tropinone reductase; Provisional
Probab=74.06 E-value=5.3 Score=40.02 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.++||+++|.| .|.+|..+++.|.+.|++|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 58999999999999999976554
No 397
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.03 E-value=5.5 Score=40.28 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=29.0
Q ss_pred CCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGfG---NVG~~aAe~L~e~GAkVVaV 445 (636)
.++||+++|.|.+ .+|..+|+.|.+.|++|+.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 4789999999975 79999999999999997654
No 398
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.80 E-value=5.1 Score=40.37 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
+++||+++|.| .+.+|..+|+.|.+.|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 57899999998 6899999999999999998765
No 399
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=73.78 E-value=3.9 Score=44.18 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=28.0
Q ss_pred CcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 416 GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
-++|+|.|.|.+|...|..+...|.. |.+-|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeCC
Confidence 47899999999999999999886677 6777873
No 400
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.76 E-value=5.4 Score=39.40 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
.++|++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 36789999998 5999999999999999997654
No 401
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=73.67 E-value=13 Score=34.76 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCCCCcchhHHHHHHHHHHHHh-CCCCCCcEEEEec--------CccHHHHHHHHHHHCCCEEEEEeCCCCce
Q 006671 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGYL 452 (636)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIqG--------fGNVG~~aAe~L~e~GAkVVaVSDs~G~I 452 (636)
.++...|-|....+++.+.+.. ...++...|.|.| .|.-...+.+.|...|.+|+.|-|..-.-
T Consensus 38 kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiP 110 (114)
T TIGR03628 38 ADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIP 110 (114)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 4678899999988888877653 3567788999999 67878889999999999999999975433
No 402
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=73.54 E-value=5 Score=43.55 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=55.2
Q ss_pred cEEEEec-CccHHHHHHHHHHHCC-CEEEEE-eCCCCceeCCCCCCHHHHHHHHHHHh---hcCCccccccccCCceeeC
Q 006671 417 LRCVVSG-SGKIAMHVLEKLIAYG-AIPVSV-SDAKGYLVDEDGFDYMKISFLRDIKS---QQRSLRDYSKTYARSKYYD 490 (636)
Q Consensus 417 krVaIqG-fGNVG~~aAe~L~e~G-AkVVaV-SDs~G~IydpdGLDve~L~~L~~~k~---~~g~l~~y~~~~p~a~~i~ 490 (636)
.+|+|.| .|.+|+.+++.|.+.. .+++++ .+. ...|-++..+ ..+.. ..+.+.+. ..+..+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~-----~~~G~~~~~~---~~~~~~~~~~~~~~~~-----~v~~~~ 70 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASE-----RSAGKTYGEA---VRWQLDGPIPEEVADM-----EVVSTD 70 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh-----hhcCCccccc---ccccccccccccccce-----EEEeCC
Confidence 6899998 8999999999998864 488888 332 1122111110 00000 00000000 011111
Q ss_pred CCCccccccceEecCCCcCccchhhHHHhhhcCceEEEeCC
Q 006671 491 EAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (636)
Q Consensus 491 ~~eil~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgA 531 (636)
.+ .+ .++|+++.|...+ +..+.++.+.+.+|++|-=++
T Consensus 71 ~~-~~-~~~DvVf~a~p~~-~s~~~~~~~~~~G~~vIDls~ 108 (349)
T PRK08664 71 PE-AV-DDVDIVFSALPSD-VAGEVEEEFAKAGKPVFSNAS 108 (349)
T ss_pred HH-Hh-cCCCEEEEeCChh-HHHHHHHHHHHCCCEEEECCc
Confidence 12 23 3799998876554 567777777677888887665
No 403
>PRK07825 short chain dehydrogenase; Provisional
Probab=73.46 E-value=6 Score=40.11 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
+++|++++|.| .|.+|+.+++.|.+.|++|+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 57889999998 5999999999999999996544
No 404
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=73.43 E-value=5.3 Score=40.35 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=31.9
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
....+++|+|.| .|.+|+.+++.|.+.|++|++++..
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 356789999999 5999999999999999998887653
No 405
>PRK07577 short chain dehydrogenase; Provisional
Probab=73.32 E-value=6 Score=38.78 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=28.6
Q ss_pred CCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 415 ~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+++++|.| .|-+|.++++.|.+.|++|+.++-
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 578899988 599999999999999999877754
No 406
>PRK06194 hypothetical protein; Provisional
Probab=73.23 E-value=5.7 Score=40.51 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
++++++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~ 36 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLA 36 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEE
Confidence 46789999998 6899999999999999996654
No 407
>PRK05876 short chain dehydrogenase; Provisional
Probab=73.19 E-value=5.8 Score=40.86 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=30.0
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++|++++|.| .|.+|+++|+.|.+.|++|+ ++|.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r 38 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGDV 38 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 47899999998 78999999999999999965 4554
No 408
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=73.16 E-value=4.8 Score=43.84 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.1
Q ss_pred CCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 415 ~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+++|.|.| .|-+|+|+++.|++.|++|.|..-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR 38 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVR 38 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEc
Confidence 678999998 699999999999999999876554
No 409
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=73.09 E-value=17 Score=38.80 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=68.6
Q ss_pred EEEEec-CccHHHHHHHHHHHCCCEEEEE-eCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCcc
Q 006671 418 RCVVSG-SGKIAMHVLEKLIAYGAIPVSV-SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (636)
Q Consensus 418 rVaIqG-fGNVG~~aAe~L~e~GAkVVaV-SDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (636)
+|+|-| .|++|+.+++.+.+.+..+|+. -|. ...|-|..++. .. .+.-. -|+..+-+-++++
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~-----~~~~~~~~~~~---g~-----~v~v~---~~~~~~~~l~~~~ 65 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGG-----EEEAENEAEVA---GK-----EILLH---GPSEREARIGEVF 65 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccc-----cccccchhhhc---cc-----ceeee---ccccccccHHHHH
Confidence 789999 5999999999998899999986 443 22333433220 00 00000 0111111112244
Q ss_pred ccccc-eEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHH---CCceEecccc
Q 006671 496 NERCD-VAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK---ANVLIAPAMA 555 (636)
Q Consensus 496 ~~~cD-IliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~---rGIlviPD~~ 555 (636)
+..+| |+|--+.... ..+|+....++++.+|++-. ..|++-.+.|.+ -++++.|.+.
T Consensus 66 ~~~~d~VvIDFT~P~~-~~~n~~~~~~~gv~~ViGTT--G~~~~~~~~l~~~~~i~~l~apNfS 126 (275)
T TIGR02130 66 AKYPELICIDYTHPSA-VNDNAAFYGKHGIPFVMGTT--GGDREALAKLVADAKHPAVIAPNMA 126 (275)
T ss_pred hhcCCEEEEECCChHH-HHHHHHHHHHCCCCEEEcCC--CCCHHHHHHHHHhcCCCEEEECccc
Confidence 44488 8887765544 34567777788999998543 345554444433 3567777664
No 410
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=72.94 E-value=5.5 Score=42.80 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=28.5
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCE-EEEEeCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAk-VVaVSDs 448 (636)
.+++|+|.|.|+||+.+|-.|...|.. -+.+.|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 578999999999999999999888762 3667776
No 411
>PRK07856 short chain dehydrogenase; Provisional
Probab=72.77 E-value=6.6 Score=39.31 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=30.0
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++|++++|.| .|-+|+.+|+.|.+.|++|+.++
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~ 37 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCG 37 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 357899999998 58999999999999999976553
No 412
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=72.70 E-value=10 Score=38.93 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=29.0
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCE-EEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAk-VVaVSDs 448 (636)
..|.+|+|.|.|.||..+++.+..+|++ |+++ |.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC
Confidence 3789999999999999999999999997 5544 54
No 413
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.66 E-value=6.8 Score=38.24 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=29.9
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++.++|+|.| .|.+|+.+++.|.+.|++|+.++.+
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 5678999997 6999999999999999997666654
No 414
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=72.56 E-value=6.6 Score=40.96 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=30.8
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..|++|.|.| .|-+|+++++.|.+.|.+|+++.+.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4688999998 6999999999999999998877663
No 415
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=72.55 E-value=2.1 Score=48.63 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.4
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEE
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPV 443 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVV 443 (636)
.|+|++|+|.|+|+.|..-|.-|...|..|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 4899999999999999988888888898865
No 416
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=72.51 E-value=14 Score=35.33 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHh-CCCCCCcEEEEec--------CccHHHHHHHHHHHCCCEEEEEeCCCCcee
Q 006671 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (636)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIqG--------fGNVG~~aAe~L~e~GAkVVaVSDs~G~Iy 453 (636)
.|+...|-|....+++.+.+.. ...++...|.|-| .|.-...+.+.|...|.+|+.|.|.+-.-+
T Consensus 45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPh 118 (132)
T PRK09607 45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPH 118 (132)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 4677899999988888887653 3567888999999 778788899999999999999999754433
No 417
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.46 E-value=20 Score=36.72 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.5
Q ss_pred cEEEEecCccHHHHHHHHHHHCCC--EEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGA--IPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GA--kVVaVSDs 448 (636)
++|.|.|+|++|..++..|.+.|. ..|.+.|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 479999999999999999998882 22455554
No 418
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.34 E-value=5.6 Score=42.29 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeC
Q 006671 411 NKELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 411 g~~l~GkrVaIqGfG---NVG~~aAe~L~e~GAkVVaVSD 447 (636)
..+++||+++|-|.| -+|+.+|+.|.+.|++||. .|
T Consensus 3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv-~~ 41 (299)
T PRK06300 3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILV-GT 41 (299)
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEE-Ee
Confidence 357899999999996 7999999999999999654 54
No 419
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=72.33 E-value=12 Score=40.40 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=52.2
Q ss_pred CcEEEEec-CccHHHHHHHHHHHCCC---EEEEEeCC--CCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee
Q 006671 416 GLRCVVSG-SGKIAMHVLEKLIAYGA---IPVSVSDA--KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (636)
Q Consensus 416 GkrVaIqG-fGNVG~~aAe~L~e~GA---kVVaVSDs--~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i 489 (636)
+++|+|.| .|.||+.++++|.+.|. ++++++.. .|--+.-+|. .....
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~--------------------------~i~v~ 54 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGK--------------------------ELKVE 54 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCc--------------------------eeEEe
Confidence 46899998 69999999999999765 44555432 2221110000 01111
Q ss_pred CCC-CccccccceEecCCCcCccchhhHHHhhhcCceEE
Q 006671 490 DEA-KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRIL 527 (636)
Q Consensus 490 ~~~-eil~~~cDIliPcA~~n~It~enA~~l~~~~akiV 527 (636)
+.+ ..| .+||++|-|+ +...+.+-++++.+.||++|
T Consensus 55 d~~~~~~-~~vDvVf~A~-g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 55 DLTTFDF-SGVDIALFSA-GGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred eCCHHHH-cCCCEEEECC-ChHHHHHHHHHHHhCCCEEE
Confidence 111 134 3799999775 56678888888878888666
No 420
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=72.20 E-value=4.7 Score=38.79 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=26.5
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEE
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVS 444 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVa 444 (636)
+++|++|+|+|.|+-|.-+|..|.+.|.+|.-
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~ 195 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTL 195 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEE
Confidence 67899999999999999999999999977543
No 421
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=72.09 E-value=6.3 Score=39.43 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++|++++|.| .|.+|..+|+.|.+.|++|+. .+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl-~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIII-NDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEE-EcC
Confidence 57899999998 689999999999999999764 444
No 422
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=72.06 E-value=11 Score=40.38 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=34.0
Q ss_pred HHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 407 l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+...+....|.+|+|.|.|.||..+++.+...|++|+.++++
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334444457899999999999999999999999998777654
No 423
>PRK06198 short chain dehydrogenase; Provisional
Probab=72.05 E-value=6.7 Score=39.20 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++++++|.| .|.+|..+++.|.+.|++.|.+.++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence 47889999998 5899999999999999994455565
No 424
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=71.96 E-value=5.8 Score=47.27 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=27.7
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|.+|...|..+...|.. |.+-|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~ 344 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDI 344 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeC
Confidence 5899999999999999999999998 567776
No 425
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=71.94 E-value=6.3 Score=38.98 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
|++++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 5789999998 6999999999999999997654
No 426
>PLN02775 Probable dihydrodipicolinate reductase
Probab=71.86 E-value=24 Score=37.84 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=69.1
Q ss_pred cEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHH-HHHHHHHHHhhcCCccccccccCCceee--CC-
Q 006671 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM-KISFLRDIKSQQRSLRDYSKTYARSKYY--DE- 491 (636)
Q Consensus 417 krVaIqGf-GNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve-~L~~L~~~k~~~g~l~~y~~~~p~a~~i--~~- 491 (636)
.+|+|-|+ |++|+.+++.+.+.+..+|+..|.. ++|-|.. ++ ... +.... ++
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~-----~~~~~~~~~~-------------~g~-----~v~~~~~~dl 68 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTG-----PAGVGVTVEV-------------CGV-----EVRLVGPSER 68 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccc-----ccccccccee-------------ccc-----eeeeecCccH
Confidence 48999995 9999999999988999999999973 3343322 11 000 11111 00
Q ss_pred CCcc-cc---ccc-eEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHC---CceEecccc
Q 006671 492 AKPW-NE---RCD-VAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKA---NVLIAPAMA 555 (636)
Q Consensus 492 ~eil-~~---~cD-IliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~r---GIlviPD~~ 555 (636)
++.+ +. .+| |+|--+.... ..+|+...+++++.+|++-.- .|++-.+.+.+. ++++.|.+.
T Consensus 69 ~~~l~~~~~~~~~~VvIDFT~P~a-~~~~~~~~~~~g~~~VvGTTG--~~~e~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 69 EAVLSSVKAEYPNLIVVDYTLPDA-VNDNAELYCKNGLPFVMGTTG--GDRDRLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred HHHHHHhhccCCCEEEEECCChHH-HHHHHHHHHHCCCCEEEECCC--CCHHHHHHHHhcCCccEEEECccc
Confidence 1122 22 467 7777664443 445777777889999986542 455544444443 567777664
No 427
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=71.85 E-value=5.6 Score=42.39 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=31.1
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
-+++++|.|.| .|-+|+++++.|.+.|..|+++.-
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999 599999999999999999888854
No 428
>PLN02253 xanthoxin dehydrogenase
Probab=71.81 E-value=6.7 Score=39.92 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
.++|++++|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 57899999998 6899999999999999997654
No 429
>PRK12827 short chain dehydrogenase; Provisional
Probab=71.80 E-value=6.6 Score=38.64 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++++|.| .|-+|+++|+.|.+.|+.|+.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 46789999998 69999999999999999976654
No 430
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=71.65 E-value=26 Score=38.47 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.7
Q ss_pred CcEEEEec-CccHHHHHHHHHHHCC
Q 006671 416 GLRCVVSG-SGKIAMHVLEKLIAYG 439 (636)
Q Consensus 416 GkrVaIqG-fGNVG~~aAe~L~e~G 439 (636)
+++|+|.| -|.||+-+.+.|.+..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~ 25 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH 25 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC
Confidence 36899998 5999999999999854
No 431
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.64 E-value=25 Score=38.77 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=74.6
Q ss_pred cEEEEecCccHHHHHHHHHHH---CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCC-C
Q 006671 417 LRCVVSGSGKIAMHVLEKLIA---YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e---~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~-~ 492 (636)
.|+-|.|.|..++.+++.|+. .++.||+|+|. +.+.. ++.. ++..+ |+.+.++. +
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~----------s~~~A---~~fA-q~~~~-------~~~k~y~syE 65 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP----------SLERA---KEFA-QRHNI-------PNPKAYGSYE 65 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc----------cHHHH---HHHH-HhcCC-------CCCccccCHH
Confidence 477899999999999998875 48999999997 22221 1111 11112 22232332 4
Q ss_pred Ccc-ccccceEecCCCcCccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHH---HHCCceEe
Q 006671 493 KPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL---KKANVLIA 551 (636)
Q Consensus 493 eil-~~~cDIliPcA~~n~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL---~~rGIlvi 551 (636)
+++ +.+||+++- +++|..+-+-+-.+++.+-.+.||=.=.-.-+|+++++ ++||+.++
T Consensus 66 eLakd~~vDvVyi-~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 66 ELAKDPEVDVVYI-STPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFM 127 (351)
T ss_pred HHhcCCCcCEEEe-CCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEE
Confidence 444 557898654 55788888888888877778999975433446777777 57786655
No 432
>PRK07326 short chain dehydrogenase; Provisional
Probab=71.59 E-value=7.3 Score=38.26 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=28.0
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
+.+++++|.| .|.+|..+++.|.+.|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 5688999997 5999999999999999997665
No 433
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=71.53 E-value=51 Score=35.11 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=59.5
Q ss_pred hCCCCccHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEEcCCCCEEEEEEEEEEecCCCCCCCCCeEEe
Q 006671 203 RDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFH 282 (636)
Q Consensus 203 ~~p~~~ef~q~v~e~~~~~~~~l~~~p~y~~i~e~L~ePer~i~f~vp~~dd~G~v~v~rGyRVqhs~alGPakGGlRfh 282 (636)
.+|++.-.+--+.|.++++...+..+-. +++...+ ...-|.++. ..| +.||+||.
T Consensus 16 ~~p~~~~~l~~f~~~~~~aks~ised~~---i~~~~~~-----------~~~~g~~~t----------~~g-a~ggv~~~ 70 (268)
T TIGR01743 16 TNPNKLIPLNFFSERYESAKSSISEDIV---IIKETFE-----------KFGIGKLLT----------VPG-AAGGVKYI 70 (268)
T ss_pred hCCCceEcHHHHHHHhccccchhhhhHH---HHHHHHH-----------hcCCceEEE----------eCC-CCCCeEEE
Confidence 4788888888888888877666544432 3333222 123455532 234 78999999
Q ss_pred cCCCHHHHH-HHH-HHhhhhhccCCCCCCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006671 283 PSMNLSIAK-FLG-FEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEI 338 (636)
Q Consensus 283 p~v~~~evk-aLA-~~MT~KnAL~gLP~GGaKGGI~~DP~~~S~~El~r~~r~f~~eL 338 (636)
|.++.++.+ +|. ....++..-.=+| ||...--.-+++.++.+.+...+.+.
T Consensus 71 p~~~~~~~~~~~~~l~~~l~~~~rilp-----gg~~~~s~ll~~P~~l~~ig~~la~~ 123 (268)
T TIGR01743 71 PKMSQAEAEEFVEELCQSLSEPERILP-----GGYLYLTDILGKPSILSKIGKILASV 123 (268)
T ss_pred eCCCHHHHHHHHHHHHHHHHHCCCccc-----CCeEEechhhcCHHHHHHHHHHHHHH
Confidence 999998765 443 2355665544444 33333222344455555444444333
No 434
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=71.51 E-value=5.4 Score=41.29 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 415 ~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
+|++|.|.| .|-+|+++++.|.+.|.+|+++.-
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r 36 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVR 36 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEc
Confidence 468999999 699999999999999999877653
No 435
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=71.40 E-value=6 Score=42.00 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=26.8
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCE-EEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAk-VVaVSDs 448 (636)
++|+|.|.|+||+.+|..|...|.. =|.+.|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4799999999999999999999852 3667776
No 436
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=71.29 E-value=7.5 Score=38.58 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+++++++.|.| .|.+|+.+++.|.+.|++|+.+.-
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~ 40 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQ 40 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 458899999998 588999999999999999776643
No 437
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=71.26 E-value=10 Score=41.16 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|.+|+|.|.|.||..+++.+..+|++|+++.++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 6899999999999999999999999998777553
No 438
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.25 E-value=6.7 Score=40.35 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfG---NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.++||+++|.|.+ .+|..+|+.|.+.|++|+. .+.
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~-~~r 41 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAF-TYQ 41 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEE-ecC
Confidence 4789999999986 6999999999999999654 443
No 439
>PRK12744 short chain dehydrogenase; Provisional
Probab=71.25 E-value=7 Score=39.25 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=30.3
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
.+++++++|.| .|.+|.++|+.|.+.|++|+.+..
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 57889999987 789999999999999999776654
No 440
>PRK07589 ornithine cyclodeaminase; Validated
Probab=71.16 E-value=52 Score=36.11 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=65.9
Q ss_pred CCcEEEEecCccHHHHHHHHHHH-CCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCC
Q 006671 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (636)
Q Consensus 415 ~GkrVaIqGfGNVG~~aAe~L~e-~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (636)
.-+++.|.|.|..|.+-++.+.. ...+=|-|.+. +.+....+.+.-... .+ .....++-+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------~~~~a~~~~~~~~~~----~~-----~v~~~~~~~ 188 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------DPAATAKLARNLAGP----GL-----RIVACRSVA 188 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------CHHHHHHHHHHHHhc----CC-----cEEEeCCHH
Confidence 34789999999999988887766 33443444443 233322222111110 00 111222211
Q ss_pred ccccccceEecCCCcC----ccchhhHHHhhhcCceEEEeCCCCCCCHHHHHHHHHCCceEecccc
Q 006671 494 PWNERCDVAFPCASQN----EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMA 555 (636)
Q Consensus 494 il~~~cDIliPcA~~n----~It~enA~~l~~~~akiVvEgAN~P~T~eA~~iL~~rGIlviPD~~ 555 (636)
-.-.++||++=|.... .+..+. ++-|+.+++=|++.|-..|.+..+-.+.-+|+ |..
T Consensus 189 ~av~~ADIIvtaT~S~~~~Pvl~~~~----lkpG~hV~aIGs~~p~~~Eld~~~l~~a~v~v-D~~ 249 (346)
T PRK07589 189 EAVEGADIITTVTADKTNATILTDDM----VEPGMHINAVGGDCPGKTELHPDILRRARVFV-EYE 249 (346)
T ss_pred HHHhcCCEEEEecCCCCCCceecHHH----cCCCcEEEecCCCCCCcccCCHHHHhcCEEEE-CCH
Confidence 1124799999777432 244443 35599999999999988887654444443444 653
No 441
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=71.09 E-value=6.3 Score=37.35 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=27.1
Q ss_pred EEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 419 CVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 419 VaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+|.| .|.||+.+++.|.+.|.+|++++-+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 57888 5999999999999999999999875
No 442
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.08 E-value=7.1 Score=38.34 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=30.5
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++.+++++|.| .|.+|..+++.|.+.|++|+.+.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47789999998 5999999999999999997766344
No 443
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.99 E-value=6.3 Score=47.05 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|.+|...|..+...|.. |.+.|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe-EEEEeC
Confidence 5799999999999999999999998 567776
No 444
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.97 E-value=6.8 Score=39.56 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=29.1
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGf---GNVG~~aAe~L~e~GAkVVaV 445 (636)
.++|++++|.|. +.+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 588999999997 479999999999999997654
No 445
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.88 E-value=7.6 Score=38.38 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~ 38 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLA 38 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence 46788999998 68999999999999999976553
No 446
>PRK06114 short chain dehydrogenase; Provisional
Probab=70.74 E-value=7.3 Score=39.09 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++|++++|.| .|-+|.++|+.|.+.|++|+. .+.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~-~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVAL-FDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 57899999997 688999999999999999764 444
No 447
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.72 E-value=6.9 Score=39.83 Aligned_cols=33 Identities=33% Similarity=0.307 Sum_probs=29.0
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGf---GNVG~~aAe~L~e~GAkVVaV 445 (636)
+++||+++|.|. +.+|..+|+.|.+.|++|+.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 578999999996 589999999999999996544
No 448
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=70.71 E-value=7.4 Score=39.00 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=28.8
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
.+++++++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 36789999998 6999999999999999997654
No 449
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=70.66 E-value=12 Score=39.65 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=32.6
Q ss_pred HHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCC-EEEEEeC
Q 006671 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSD 447 (636)
Q Consensus 407 l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GA-kVVaVSD 447 (636)
+...+..-.|.+|.|.|.|.||+.+++.+...|+ +|++++.
T Consensus 169 l~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 169 LDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3444433378999999999999999999999999 7766644
No 450
>PRK06914 short chain dehydrogenase; Provisional
Probab=70.60 E-value=7.1 Score=39.66 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.6
Q ss_pred CCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 415 ~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
++++++|.| .|-+|.++++.|.+.|++|++++-
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r 35 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMR 35 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeC
Confidence 578888887 699999999999999999877653
No 451
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=70.40 E-value=17 Score=33.37 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCCCcchhHHHHHHHHHHHHh-CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCcee
Q 006671 390 LRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (636)
Q Consensus 390 ~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~Iy 453 (636)
+....|-|....+++.+.+.. ...++...|.+-|+|.=...+.+.|...|.+|+.|.|....-|
T Consensus 36 g~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iph 100 (108)
T TIGR03632 36 GSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPH 100 (108)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 456888888887777766543 3567788899999998677778888999999999999765544
No 452
>PRK08265 short chain dehydrogenase; Provisional
Probab=70.36 E-value=7.4 Score=39.40 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++++++++|.| .|-+|..+|+.|.+.|++|+. .|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAI-VDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 47899999998 599999999999999999654 454
No 453
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.35 E-value=7.5 Score=34.42 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=57.1
Q ss_pred EEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceee--CC--CCc
Q 006671 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--DE--AKP 494 (636)
Q Consensus 419 VaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i--~~--~ei 494 (636)
|+|.|+|.+|+.+++.|.+.+.+|+.|.. |.+....+ .+. + + ..+ +. .+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~-----------d~~~~~~~---~~~-~-~----------~~i~gd~~~~~~ 54 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR-----------DPERVEEL---REE-G-V----------EVIYGDATDPEV 54 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES-----------SHHHHHHH---HHT-T-S----------EEEES-TTSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC-----------CcHHHHHH---Hhc-c-c----------ccccccchhhhH
Confidence 68999999999999999997667655543 23332212 111 1 1 111 11 112
Q ss_pred c----ccccceEecCCCcCccchhhHHHhh--hcCceEEEeCCCCCCCHHHHHHHHHCCce
Q 006671 495 W----NERCDVAFPCASQNEIDQSDAINLV--NSGCRILVEGSNMPCTPEAVDVLKKANVL 549 (636)
Q Consensus 495 l----~~~cDIliPcA~~n~It~enA~~l~--~~~akiVvEgAN~P~T~eA~~iL~~rGIl 549 (636)
| -.++|.++=+......|-.-+..+- ....++|+..- +++..+.|++-|+-
T Consensus 55 l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 55 LERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGAD 111 (116)
T ss_dssp HHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-S
T ss_pred HhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcC
Confidence 2 1378877777665444443333332 22478888764 46677888888864
No 454
>PRK05854 short chain dehydrogenase; Provisional
Probab=70.34 E-value=7.3 Score=41.03 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=30.3
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++|++++|.| .+-+|..+|+.|.+.|++|+.++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 468899999998 58899999999999999976553
No 455
>PRK05866 short chain dehydrogenase; Provisional
Probab=70.32 E-value=7.7 Score=40.45 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 411 g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
+.++++++++|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~ 71 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVA 71 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3457889999998 59999999999999999976553
No 456
>PLN02206 UDP-glucuronate decarboxylase
Probab=70.26 E-value=6.4 Score=44.14 Aligned_cols=37 Identities=35% Similarity=0.634 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 411 g~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
|..-++++|.|.| .|-||+++++.|.+.|.+|+++..
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 4445679999999 699999999999999999887743
No 457
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.19 E-value=9.4 Score=42.01 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=29.8
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++..++++|.|+|.+|+.+++.|.+.|..|+ +.|.
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~ 262 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIER 262 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 4567899999999999999999999999964 4454
No 458
>PRK08589 short chain dehydrogenase; Validated
Probab=70.14 E-value=7.5 Score=39.67 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaV 445 (636)
.++|++++|.|. |-+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999984 889999999999999997665
No 459
>PRK08278 short chain dehydrogenase; Provisional
Probab=70.14 E-value=7.7 Score=39.69 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++++|.| .|-+|..+|+.|.+.|++|+.++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 37 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAA 37 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 46889999998 68999999999999999976664
No 460
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=69.79 E-value=35 Score=36.14 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=28.7
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEe
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVS 446 (636)
-.|.+|+|.|.|.+|..+++.+...|++|+++.
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~ 196 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMT 196 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Confidence 358999999999999999999999999976653
No 461
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=69.45 E-value=13 Score=39.75 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
-.|.+|+|.|. |.||..+++.+...|++|++++.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 46899999998 999999999999999998776543
No 462
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.26 E-value=8.3 Score=42.17 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHHHhCCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 406 ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 406 ~l~~~g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.|++.|.. .|+++.|.|.|-+|.-+.++...+|++|++||.+
T Consensus 173 pLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~ 214 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTS 214 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCC
Confidence 35566766 8999999999999999999999999999999887
No 463
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=69.24 E-value=7.5 Score=41.48 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.6
Q ss_pred CCCCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEE
Q 006671 411 NKELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVS 444 (636)
Q Consensus 411 g~~l~GkrVaIqGf---GNVG~~aAe~L~e~GAkVVa 444 (636)
+.+|+||+++|-|. .-.|..+|+.|.+.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 45799999999998 56999999999999999876
No 464
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=69.19 E-value=14 Score=38.79 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
-.|.+|.|.|. |.||..+++.+..+|++|++++.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999996 999999999999999998776654
No 465
>PRK12747 short chain dehydrogenase; Provisional
Probab=69.12 E-value=8.6 Score=38.38 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=28.3
Q ss_pred CCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 414 l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++|++++|.| .|-+|.++|+.|.+.|++|+.+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence 4688999998 68999999999999999976543
No 466
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=69.12 E-value=12 Score=39.57 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+.+++++|-| ++..|...|+.|.+.|..+|-|+=+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 46789999999 7999999999999999998888764
No 467
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=69.05 E-value=8.2 Score=38.70 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++++|+|.| .|.+|.++++.|.+.|++|+.++
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 46799999987 68999999999999999977553
No 468
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=69.04 E-value=6.6 Score=47.06 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=27.6
Q ss_pred cEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|+|.|.|.+|...|..+...|.. |.+-|.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~ 366 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDA 366 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCc-EEEecC
Confidence 5899999999999999999999998 557776
No 469
>PRK12359 flavodoxin FldB; Provisional
Probab=69.01 E-value=9.2 Score=37.83 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCCCCcEEEEecCccH-HH---------HHHHHHHHCCCEEEEEeCCCCceeCC
Q 006671 412 KELKGLRCVVSGSGKI-AM---------HVLEKLIAYGAIPVSVSDAKGYLVDE 455 (636)
Q Consensus 412 ~~l~GkrVaIqGfGNV-G~---------~aAe~L~e~GAkVVaVSDs~G~Iydp 455 (636)
.+|+||+|++-|+|+- |+ .+.+.|.+.|+++|+-....|+=|+.
T Consensus 75 ~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~ 128 (172)
T PRK12359 75 LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTS 128 (172)
T ss_pred CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCccccc
Confidence 4799999999999995 32 35566667899999988887776653
No 470
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=69.01 E-value=8.1 Score=39.06 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=30.3
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.++++++++|.| .|.+|..+|+.|.+.|++|+.+ +.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~-~~ 42 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFN-DI 42 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE-eC
Confidence 367899999987 6899999999999999997654 54
No 471
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=68.98 E-value=6.9 Score=42.38 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=29.0
Q ss_pred CCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 415 ~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++|+|.|. |.||+++++.|.+.|..|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5689999985 9999999999999999988875
No 472
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=68.96 E-value=8 Score=38.94 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.++|++++|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLE 37 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 36789999998 57899999999999999976553
No 473
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.91 E-value=8.6 Score=38.98 Aligned_cols=36 Identities=31% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCCCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqGfG---NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++||+++|.|.+ .+|..+|+.|.+.|++|+ +.+.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r 44 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYL 44 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 46789999999965 699999999999999954 4454
No 474
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.86 E-value=7.8 Score=40.61 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=30.5
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.+++|++++|.| .|.+|..+|+.|.+.|++||. .|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~-~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVV-NDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-ecC
Confidence 578999999998 588999999999999999654 443
No 475
>PLN00198 anthocyanidin reductase; Provisional
Probab=68.74 E-value=7.4 Score=40.97 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++++|.|.| .|-+|+++++.|.+.|++|++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 45689999998 89999999999999999987654
No 476
>PRK09620 hypothetical protein; Provisional
Probab=68.68 E-value=8.3 Score=39.71 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=29.0
Q ss_pred CCCcEEEEecC-----------------ccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGf-----------------GNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+|++|.|.+- |-+|+++|+.|.+.|+.|+.|...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46888888732 999999999999999998877653
No 477
>PRK08017 oxidoreductase; Provisional
Probab=68.63 E-value=7.6 Score=38.61 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=27.1
Q ss_pred cEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006671 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 417 krVaIqGf-GNVG~~aAe~L~e~GAkVVaVSD 447 (636)
++++|.|. |.+|+.+++.|.+.|++|+.++-
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 58999996 99999999999999999776643
No 478
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=68.59 E-value=20 Score=34.91 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCcE-EEEecCccHHH---HHHHHHHHCCCEEEE
Q 006671 394 ATGYGLVFFAQLILADMNKELKGLR-CVVSGSGKIAM---HVLEKLIAYGAIPVS 444 (636)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~Gkr-VaIqGfGNVG~---~aAe~L~e~GAkVVa 444 (636)
..|++++..++..+. ....++ +++.|.||=|. .+|++|.+.|.+|..
T Consensus 7 ~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 7 NAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 456777766665543 334545 46679988765 788999999999554
No 479
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=68.50 E-value=7.5 Score=46.31 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=26.8
Q ss_pred cEEEEecCccHHHHHHHHHH-HCCCEEEEEeCC
Q 006671 417 LRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~-e~GAkVVaVSDs 448 (636)
++|+|.|.|.+|...|..+. ..|.. |.+.|.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~ 341 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDI 341 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeC
Confidence 68999999999999999988 77887 566776
No 480
>PRK12743 oxidoreductase; Provisional
Probab=68.37 E-value=9.1 Score=38.48 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=27.9
Q ss_pred CcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 416 GLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 416 GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
+++|+|.| .|.+|..+|+.|.+.|++|+.+..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 57888887 5889999999999999998766543
No 481
>CHL00041 rps11 ribosomal protein S11
Probab=68.36 E-value=20 Score=33.39 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=50.2
Q ss_pred CCCCcchhHHHHHHHHHHHHh-CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCceeC
Q 006671 390 LRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVD 454 (636)
Q Consensus 390 ~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~Iyd 454 (636)
+....|-|....+++.+++.. ...++...|.|-|+|.=...+.+.|.+.|.+|+.|.|....-||
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~TpiphN 114 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPHN 114 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 455788888877777776543 35678889999999986677778899999999999997654443
No 482
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=68.36 E-value=9.8 Score=37.71 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeC
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSD 447 (636)
+++++++.|.| .|-+|.++|+.|.+.|++|+.+..
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~ 38 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYN 38 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence 36789999998 799999999999999999875544
No 483
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.24 E-value=8.9 Score=39.40 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=29.1
Q ss_pred CCCcEEEEecCc---cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfG---NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|++++|.|.+ .+|..+|+.|.+.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 789999999976 699999999999999975 4443
No 484
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=68.03 E-value=6.6 Score=45.14 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.0
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
..|++|+|+|.|..|..+|..|.+.|++ |.|.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence 4689999999999999999999999999 556664
No 485
>PLN02427 UDP-apiose/xylose synthase
Probab=68.03 E-value=8.2 Score=41.66 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEec-CccHHHHHHHHHHHC-CCEEEEEeC
Q 006671 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAY-GAIPVSVSD 447 (636)
Q Consensus 411 g~~l~GkrVaIqG-fGNVG~~aAe~L~e~-GAkVVaVSD 447 (636)
|..++.++|.|.| .|-+|+++++.|.+. |.+|+++..
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 4667778999998 699999999999998 589888753
No 486
>PRK06182 short chain dehydrogenase; Validated
Probab=67.94 E-value=8.8 Score=38.96 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCcEEEEec-CccHHHHHHHHHHHCCCEEEEEe
Q 006671 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 415 ~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVS 446 (636)
++++++|.| .|.+|..+|+.|.+.|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578999998 58999999999999999987654
No 487
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=67.89 E-value=8.5 Score=35.73 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.2
Q ss_pred EEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 419 VaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+|.|.|.+|...|-.|++.|..|..++-+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999997666654
No 488
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=67.86 E-value=8.5 Score=39.10 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=28.5
Q ss_pred CCCCcEEEEecC---ccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqGf---GNVG~~aAe~L~e~GAkVVaV 445 (636)
+++||+++|.|. +-+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~ 38 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGIT 38 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 478999999996 479999999999999996543
No 489
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=67.81 E-value=8.8 Score=38.98 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 412 ~~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.++++++++|.| .|.+|+.+++.|.+.|++|+. .+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~-~~r 42 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAI-LDR 42 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 467899999998 589999999999999999654 444
No 490
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.76 E-value=7.9 Score=42.78 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=31.6
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCC
Q 006671 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (636)
Q Consensus 413 ~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~ 449 (636)
++.+++|.|.|+|.-|..++++|.+.|++ |.++|..
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~-v~~~D~~ 38 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVT-PRVIDTR 38 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCe-EEEEcCC
Confidence 35688999999999999999999999998 5779963
No 491
>PLN02214 cinnamoyl-CoA reductase
Probab=67.70 E-value=8 Score=41.25 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.2
Q ss_pred CCCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEeC
Q 006671 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (636)
Q Consensus 414 l~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVSD 447 (636)
+++++|+|.|. |-+|+++++.|.+.|.+|++++-
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57889999995 99999999999999999887754
No 492
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=67.65 E-value=8.5 Score=42.02 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=29.8
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
....+|+|.|-|-||.++|+...-+||+ |+|-|.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~ 199 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDL 199 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCe-eEEEec
Confidence 3456899999999999999999999999 688885
No 493
>PRK07831 short chain dehydrogenase; Provisional
Probab=67.65 E-value=9 Score=38.58 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=29.0
Q ss_pred CCCCcEEEEecC-c-cHHHHHHHHHHHCCCEEEEEeCC
Q 006671 413 ELKGLRCVVSGS-G-KIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 413 ~l~GkrVaIqGf-G-NVG~~aAe~L~e~GAkVVaVSDs 448 (636)
.++|++++|.|. | .+|..+++.|.+.|++|+ +.|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 357899999996 6 699999999999999955 4454
No 494
>PRK05309 30S ribosomal protein S11; Validated
Probab=67.62 E-value=21 Score=33.90 Aligned_cols=64 Identities=19% Similarity=0.142 Sum_probs=49.4
Q ss_pred CCCCcchhHHHHHHHHHHHHh-CCCCCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCCCCcee
Q 006671 390 LRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (636)
Q Consensus 390 ~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs~G~Iy 453 (636)
+....|-|....+++.+.+.. ...+....|.|-|+|.=...+.+.|...|.+|+.|.|..-.-|
T Consensus 53 g~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~Tpiph 117 (128)
T PRK05309 53 GSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPH 117 (128)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 456788888877777766542 3557788899999998677777888889999999999754433
No 495
>PRK05993 short chain dehydrogenase; Provisional
Probab=67.42 E-value=8.5 Score=39.39 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=27.6
Q ss_pred CCcEEEEecC-ccHHHHHHHHHHHCCCEEEEEe
Q 006671 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (636)
Q Consensus 415 ~GkrVaIqGf-GNVG~~aAe~L~e~GAkVVaVS 446 (636)
.+++|+|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3678999985 9999999999999999977654
No 496
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=67.41 E-value=6.5 Score=41.99 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=32.0
Q ss_pred CCCcEEEEecCccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 414 l~GkrVaIqGfGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|...+|.|+|.|-+|..+|+.|...|.+=|++.|.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~ 51 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDT 51 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 56789999999999999999999999988888885
No 497
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=67.32 E-value=8.2 Score=38.79 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.1
Q ss_pred cEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
++|.|.| .|++|+.++..|.+.|..|+ +.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEc
Confidence 3799997 99999999999999998864 4454
No 498
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=67.24 E-value=9.2 Score=35.38 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=26.9
Q ss_pred cEEEEec-CccHHHHHHHHHHHCCCEEEEEeCC
Q 006671 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (636)
Q Consensus 417 krVaIqG-fGNVG~~aAe~L~e~GAkVVaVSDs 448 (636)
|+++|.| .+.+|..+++.|.+.|+++|.+.+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r 33 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSR 33 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeee
Confidence 6788887 7999999999999998866666665
No 499
>PRK07985 oxidoreductase; Provisional
Probab=67.21 E-value=8.7 Score=40.04 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCCcEEEEec-CccHHHHHHHHHHHCCCEEEEE
Q 006671 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (636)
Q Consensus 413 ~l~GkrVaIqG-fGNVG~~aAe~L~e~GAkVVaV 445 (636)
.++|++++|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAIS 79 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 47899999998 5999999999999999997643
No 500
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=67.03 E-value=15 Score=43.43 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=60.2
Q ss_pred cEEEEecCccHHHHHHHHHHHCCC--EEEEEeCCCCceeCCCCCCHHHHHHHHHHHhhcCCccccccccCCceeeCCCCc
Q 006671 417 LRCVVSGSGKIAMHVLEKLIAYGA--IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (636)
Q Consensus 417 krVaIqGfGNVG~~aAe~L~e~GA--kVVaVSDs~G~IydpdGLDve~L~~L~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (636)
++|.|.|+|++|..+++.|.+.|. + |.+.|. ++ +++.... +.+-... ..-+..+.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~-V~~~d~-----~~-----~~~~~a~----~~g~~~~--------~~~~~~~~ 60 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLARE-VVAVDR-----RA-----KSLELAV----SLGVIDR--------GEEDLAEA 60 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCE-EEEEEC-----Ch-----hHHHHHH----HCCCCCc--------ccCCHHHH
Confidence 689999999999999999999983 5 444554 22 2221111 1111100 00011111
Q ss_pred cccccceEecCCCcCccchhhHHHhhh--cCceEEEeCCCCC--CCHHHHHHHHHCCceEeccccc
Q 006671 495 WNERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNMP--CTPEAVDVLKKANVLIAPAMAA 556 (636)
Q Consensus 495 l~~~cDIliPcA~~n~It~enA~~l~~--~~akiVvEgAN~P--~T~eA~~iL~~rGIlviPD~~a 556 (636)
+ .+||++|-|.....+ .+-...+.+ ..-.+|..-+... +..+..+.+....+.++|+--.
T Consensus 61 ~-~~aDvVilavp~~~~-~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm 124 (735)
T PRK14806 61 V-SGADVIVLAVPVLAM-EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPI 124 (735)
T ss_pred h-cCCCEEEECCCHHHH-HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCc
Confidence 2 378999998875533 333333321 1223555554432 2334444554456677776553
Done!